Psyllid ID: psy985

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MCGHSFNVSNPFSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTEDIDFKNS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEEEccEEEEEEEccccccEEEEccccccccccccccccccEEEEEEcccHHHHHHHHHccHHHHHHHHHcccEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccHccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEEEcccEEEEEEEcccccccEEEcHHHccccccccccccccEEEEEEcccHHHHHHHHcccHHHHHHHHHccEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccc
Coil and Loop (DISEMBL)
mcghsfnvsnpfsllrwqpeskfqfsmvrlppretinsgfvenqevevfskategescgWWKVIVKMIKGDFHVVEYlgcqstfteivppermrqkntnppidaktfhkfdievpLDVQEFAKMEGAHKDFQKAIAAAIVRYipdkgalsvISRDEACQKRASMIKDMHFRNLNQKVVLLKrtedidfkns
Flexible Loop (DISEMBL)
mcghsfnvsnpfsllrwQPESKFQFSMVRLPPRETINSGFVENQEVEVfskategescgWWKVIVKMIKGDFHVVEYLGCQSTfteivppermrqkNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASmikdmhfrnlnqkvvllkrtedidfkns
Low Complexity Region (SEG)
MCGHSFNVSNPFSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTEDIDFKNS
Disordered region (IsUnstruct)
***********FSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIV***************AKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKR*********
Disordered Region (DISOPRED)
*******VSNPFSLLRWQPESKFQFSMVRLPPRE*I**GFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQK***************
Disordered Region (DISEMBL)
MCGHSFNVSNPFSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTEDIDFKNS
Disordered Region (DISPRO)
*CGHSFNVSNPFSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGHSFNVSNPFSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTEDIDFKNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q9NFU0	684	Fragile X mental retardat	yes	N/A	0.874	0.244	0.520	1e-44
Q80WE1	593	Fragile X mental retardat	yes	N/A	0.884	0.284	0.467	4e-40
P35922	614	Fragile X mental retardat	yes	N/A	0.884	0.275	0.467	4e-40
Q06787	632	Fragile X mental retardat	no	N/A	0.884	0.267	0.455	2e-39
Q5R9B4	594	Fragile X mental retardat	yes	N/A	0.884	0.284	0.455	2e-39
P51114	621	Fragile X mental retardat	no	N/A	0.884	0.272	0.431	4e-38
Q5XI81	568	Fragile X mental retardat	no	N/A	0.884	0.297	0.431	5e-38
O70523	621	Fragile X mental retardat	no	N/A	0.884	0.272	0.431	5e-38
Q61584	677	Fragile X mental retardat	no	N/A	0.884	0.249	0.431	5e-38
P51113	564	Fragile X mental retardat	N/A	N/A	0.884	0.299	0.443	6e-38

>sp|Q9NFU0|FMR1_DROME Fragile X mental retardation syndrome-related protein 1 OS=Drosophila melanogaster GN=Fmr1 PE=1 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 4/171 (2%)

Query: 19  PES-KFQFSMVRLPPRETINSG---FVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHV 74
           PES K+ F  VRLPP ET+      F E  EVEVF++  + E+CGWW  I+KM K + + 
Sbjct: 36  PESMKYPFVNVRLPPEETVEVAAPIFEEGMEVEVFTRTNDRETCGWWVGIIKMRKAEIYA 95

Query: 75  VEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKA 134
           V Y+G ++++TEI    R+R KN+NPPI AKTF++F + VP +++E A+ +G HK+FQ+ 
Sbjct: 96  VAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFTLPVPEELREEAQKDGIHKEFQRT 155

Query: 135 IAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           I A +  Y  D  AL VIS+ E  QKRASM+KDMHFRNL+QKV+LLKRTE+
Sbjct: 156 IDAGVCNYSRDLDALIVISKFEHTQKRASMLKDMHFRNLSQKVMLLKRTEE 206

RNA-binding protein that associates with translating ribosomes and acts as a negative translational regulator of specific mRNAs. Represses translation of futsch to regulate microtubule-dependent synaptic growth and function. Part of the RNA interference (RNAi)-related apparatus; double-stranded RNA induces potent and specific gene silencing. Regulates photoreceptor structure and neurotransmission in the eye. Required for stability of the central pair of microtubules in the spermatid axoneme.
Drosophila melanogaster (taxid: 7227)

>sp|Q80WE1|FMR1_RAT Fragile X mental retardation protein 1 homolog OS=Rattus norvegicus GN=Fmr1 PE=2 SV=2

 Score =  164 bits (414), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 105/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct: 36  WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N P    TFHK  +EVP D+++    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct: 156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression. RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. Involved in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C).

Rattus norvegicus (taxid: 10116)

>sp|P35922|FMR1_MOUSE Fragile X mental retardation protein 1 homolog OS=Mus musculus GN=Fmr1 PE=1 SV=1

 Score =  164 bits (414), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 105/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct: 36  WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N P    TFHK  +EVP D+++    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct: 156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. May play a role in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C) (By similarity). Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression.

Mus musculus (taxid: 10090)

>sp|Q06787|FMR1_HUMAN Fragile X mental retardation protein 1 OS=Homo sapiens GN=FMR1 PE=1 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 105/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQP+ +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct: 36  WQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N P    TFHK  ++VP D+++    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct: 156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEE 204

Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression (By similarity). RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. May play a role in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C).

Homo sapiens (taxid: 9606)

>sp|Q5R9B4|FMR1_PONAB Fragile X mental retardation protein 1 homolog OS=Pongo abelii GN=FMR1 PE=2 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 105/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQP+ +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct: 36  WQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N P    TFHK  ++VP D+++    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKESAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct: 156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEE 204

Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression. RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. May play a role in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C).

Pongo abelii (taxid: 9601)

>sp|P51114|FXR1_HUMAN Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=1 SV=3

 Score =  157 bits (397), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F+ VRLPP   I     E  EVEV+S+A + E CGWW   V+M+KG+F+V+E
Sbjct: 36  WQPERQVPFNEVRLPPPPDIKKEISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N  +   TF K  ++VP D++E    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  + Y P+   L ++S  EA  KR +++ DMH R++  K++L+ R E+
Sbjct: 156 ACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEE 204

RNA-binding protein required for embryonic and postnatal development of muscle tissue. May regulate intracellular transport and local translation of certain mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q5XI81|FXR1_RAT Fragile X mental retardation syndrome-related protein 1 OS=Rattus norvegicus GN=Fxr1 PE=2 SV=1

 Score =  157 bits (396), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F+ VRLPP   I     E  EVEV+S+A + E CGWW   V+M+KG+F+V+E
Sbjct: 36  WQPERQVPFNEVRLPPPPDIKKEISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N  +   TF K  ++VP D++E    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  + Y P+   L ++S  EA  KR +++ DMH R++  K++L+ R E+
Sbjct: 156 ACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEE 204

RNA-binding protein required for embryonic and postnatal development of muscle tissue. May regulate intracellular transport and local translation of certain mRNAs.

Rattus norvegicus (taxid: 10116)

>sp|O70523|FXR1_CRIGR Fragile X mental retardation syndrome-related protein 1 OS=Cricetulus griseus GN=FXR1 PE=2 SV=1

 Score =  157 bits (396), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F+ VRLPP   I     E  EVEV+S+A + E CGWW   V+M+KG+F+V+E
Sbjct: 36  WQPERQVPFNEVRLPPPPDIKKEISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N  +   TF K  ++VP D++E    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  + Y P+   L ++S  EA  KR +++ DMH R++  K++L+ R E+
Sbjct: 156 ACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEE 204

RNA-binding protein required for embryonic and postnatal development of muscle tissue. May regulate intracellular transport and local translation of certain mRNAs.

Cricetulus griseus (taxid: 10029)

>sp|Q61584|FXR1_MOUSE Fragile X mental retardation syndrome-related protein 1 OS=Mus musculus GN=Fxr1 PE=1 SV=2

 Score =  157 bits (396), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F+ VRLPP   I     E  EVEV+S+A + E CGWW   V+M+KG+F+V+E
Sbjct: 36  WQPERQVPFNEVRLPPPPDIKKEISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N  +   TF K  ++VP D++E    E AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  + Y P+   L ++S  EA  KR +++ DMH R++  K++L+ R E+
Sbjct: 156 ACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEE 204

RNA-binding protein required for embryonic and postnatal development of muscle tissue. May regulate intracellular transport and local translation of certain mRNAs.

Mus musculus (taxid: 10090)

>sp|P51113|FMR1A_XENLA Fragile X mental retardation protein 1 homolog A OS=Xenopus laevis GN=fmr1-a PE=1 SV=1

 Score =  156 bits (395), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 103/169 (60%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQ E +  F  VR PP    N    E  EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct: 36  WQQERQIPFHDVRFPPPSGYNKDINERDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y  C +T+ EIV  ER+R  N N P    +FHK  ++VP D+++    + AHKDF+KA+ 
Sbjct: 96  YAACDATYNEIVTIERLRSVNPNKPATKSSFHKVKLDVPEDLRQMCAKDSAHKDFKKAVG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           A  V Y  +   L ++S +E   KRASM+ DMHFR+L  K+ L+ R E+
Sbjct: 156 AFSVSYDSENYQLVILSVNEVSIKRASMLSDMHFRSLRTKLSLMLRNEE 204

Translation repressor. RNA-binding protein. Associated with polysomes and might be involved in the transport of mRNA from the nucleus to the cytoplasm (By similarity). Binds poly(G) and poly(U), and to a lower extent poly(C).

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
206725166	577	fmr [Gryllus bimaculatus]	0.884	0.292	0.641	1e-61
350404195	599	PREDICTED: fragile X mental retardation	0.884	0.282	0.615	3e-58
340725692	600	PREDICTED: fragile X mental retardation	0.884	0.281	0.615	3e-58
340725688	605	PREDICTED: fragile X mental retardation	0.884	0.279	0.615	4e-58
157122825	717	fragile X mental retardation syndrome-re	0.879	0.234	0.609	5e-58
328783510	597	PREDICTED: fragile X mental retardation	0.884	0.283	0.609	7e-58
332023074	599	Fragile X mental retardation syndrome-re	0.884	0.282	0.603	9e-58
307203416	603	Fragile X mental retardation syndrome-re	0.884	0.280	0.603	9e-58
328783508	602	PREDICTED: fragile X mental retardation	0.884	0.280	0.609	9e-58
383859712	597	PREDICTED: fragile X mental retardation	0.884	0.283	0.609	1e-57

>gi|206725166|dbj|BAG71783.1| fmr [Gryllus bimaculatus]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 142/170 (83%), Gaps = 1/170 (0%)

Query: 17  WQPESKFQFSMVRLPPRETIN-SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVV 75
           WQPESKF FS VRLPP  ++  + F E+QE+EVFS+A + E+CGWWK I+KMIKGDFHVV
Sbjct: 48  WQPESKFPFSQVRLPPDASLGKTDFTEHQEIEVFSRANDQEACGWWKAIIKMIKGDFHVV 107

Query: 76  EYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAI 135
           EYLG ++T+TEIVP +R+R KN NPPI+  TF KF+IEVP +++E+AK+E AHK+FQKAI
Sbjct: 108 EYLGWENTYTEIVPSDRLRPKNPNPPINKSTFFKFEIEVPEELREYAKVETAHKEFQKAI 167

Query: 136 AAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
            AAI RY+P++G LS ISR E  +KR++M+++MHFRNL QKV+LLKRTE+
Sbjct: 168 EAAICRYVPERGVLSCISRCETSKKRSAMLQEMHFRNLTQKVLLLKRTEE 217

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404195|ref|XP_003487031.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like [Bombus impatiens]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 130/169 (76%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP +     F EN E+EVFS++ E E+CGWWK I+KM KG F VVE
Sbjct: 36  WQPESKFPFAQVRLPPTDVQKPEFSENMEIEVFSRSNEHEACGWWKAIIKMSKGGFQVVE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y G +  +TEIV  ER+R KN NPPID  TFHK +IEVP D++EFAKME AHK+FQKAI 
Sbjct: 96  YSGWECAYTEIVASERLRAKNPNPPIDKNTFHKIEIEVPEDLREFAKMENAHKEFQKAIG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + +SM+++MHFRNL+QKV+LLKRTE+
Sbjct: 156 AAVCRYVPERGVLLAISRHENLHRHSSMLQEMHFRNLSQKVLLLKRTEE 204

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725692|ref|XP_003401200.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like isoform 3 [Bombus terrestris]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 130/169 (76%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP +     F EN E+EVFS++ E E+CGWWK I+KM KG F VVE
Sbjct: 36  WQPESKFPFAQVRLPPTDVQKPEFSENMEIEVFSRSNEHEACGWWKAIIKMSKGGFQVVE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y G +  +TEIV  ER+R KN NPPID  TFHK +IEVP D++EFAKME AHK+FQKAI 
Sbjct: 96  YSGWECAYTEIVASERLRAKNPNPPIDKNTFHKIEIEVPEDLREFAKMENAHKEFQKAIG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + +SM+++MHFRNL+QKV+LLKRTE+
Sbjct: 156 AAVCRYVPERGVLLAISRHENLHRHSSMLQEMHFRNLSQKVLLLKRTEE 204

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725688|ref|XP_003401198.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like isoform 1 [Bombus terrestris] gi|340725690|ref|XP_003401199.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like isoform 2 [Bombus terrestris]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 130/169 (76%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP +     F EN E+EVFS++ E E+CGWWK I+KM KG F VVE
Sbjct: 74  WQPESKFPFAQVRLPPTDVQKPEFSENMEIEVFSRSNEHEACGWWKAIIKMSKGGFQVVE 133

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y G +  +TEIV  ER+R KN NPPID  TFHK +IEVP D++EFAKME AHK+FQKAI 
Sbjct: 134 YSGWECAYTEIVASERLRAKNPNPPIDKNTFHKIEIEVPEDLREFAKMENAHKEFQKAIG 193

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + +SM+++MHFRNL+QKV+LLKRTE+
Sbjct: 194 AAVCRYVPERGVLLAISRHENLHRHSSMLQEMHFRNLSQKVLLLKRTEE 242

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157122825|ref|XP_001659932.1| fragile X mental retardation syndrome-related protein 1, putative [Aedes aegypti] gi|108874593|gb|EAT38818.1| AAEL009326-PA [Aedes aegypti]

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 139/169 (82%), Gaps = 1/169 (0%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQ ESKF FS VRLPP ET  + F E+ EVEV+S++ + E+CGWW+ ++KM+KG+F VVE
Sbjct: 31  WQEESKFLFSQVRLPPTETPTT-FCEHMEVEVYSRSNDNEACGWWRAVIKMMKGEFFVVE 89

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           YLG  +++TEIV  +R+R KNTNPPI+ KTF +F+IEVP D++E+AK++G H++FQKAI 
Sbjct: 90  YLGWDNSYTEIVSADRLRAKNTNPPINEKTFFRFEIEVPEDIREYAKIDGVHREFQKAIG 149

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA  RY+PD+G L VISR EA Q+RA+MI++M FRNL+QKV+LLKRTE+
Sbjct: 150 AAECRYLPDRGTLLVISRSEATQRRANMIQEMCFRNLSQKVMLLKRTEE 198

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783510|ref|XP_394058.4| PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform 2 [Apis mellifera]

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 130/169 (76%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP +     F EN E+EVFS++ E E+CGWWK I+KM KG F VVE
Sbjct: 36  WQPESKFPFAQVRLPPTDGQKPEFSENMEIEVFSRSNEHEACGWWKAIIKMSKGGFQVVE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y G +  +TEIV  ER+R KN NPPID  TFHK +IEVP D++EFAKME AHK+FQKAI 
Sbjct: 96  YSGWECAYTEIVASERLRAKNPNPPIDKNTFHKIEIEVPEDLREFAKMENAHKEFQKAIG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + ++M+++MHFRNL+QKV+LLKRTE+
Sbjct: 156 AAVCRYVPERGVLLAISRHENLHRHSTMLQEMHFRNLSQKVLLLKRTEE 204

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023074|gb|EGI63339.1| Fragile X mental retardation syndrome-related protein 1 [Acromyrmex echinatior]

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 102/169 (60%), Positives = 134/169 (79%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP++   + F ENQE+EVFS++ + E+ GWWK ++KM KG F VVE
Sbjct: 36  WQPESKFPFAQVRLPPKDGSKTEFQENQEIEVFSRSNDQEAWGWWKALIKMSKGGFQVVE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           YLG + T+TEIV  ER+R KN NPPID  TFHK +IEVP +++EFAKM+ AHK+FQKAI 
Sbjct: 96  YLGWEYTYTEIVASERLRAKNPNPPIDKNTFHKIEIEVPEELREFAKMDNAHKEFQKAIG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + +SM+++MHFRNL+QKV+LLKRTE+
Sbjct: 156 AAVCRYVPERGVLLAISRHENIHRHSSMLQEMHFRNLSQKVLLLKRTEE 204

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203416|gb|EFN82491.1| Fragile X mental retardation syndrome-related protein 1 [Harpegnathos saltator]

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 102/169 (60%), Positives = 134/169 (79%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP++   + F ENQE+EVFS++ + E+ GWWK ++KM KG F VVE
Sbjct: 74  WQPESKFPFAQVRLPPKDGSKAEFQENQEIEVFSRSNDQEAWGWWKALIKMSKGGFQVVE 133

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           YLG + T+TEIV  ER+R KN NPPID  TFHK +IEVP +++EFAKM+ AHK+FQKAI 
Sbjct: 134 YLGWEYTYTEIVASERLRAKNPNPPIDKNTFHKIEIEVPEELREFAKMDNAHKEFQKAIG 193

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + +SM+++MHFRNL+QKV+LLKRTE+
Sbjct: 194 AAVCRYVPERGVLLAISRHENIHRHSSMLQEMHFRNLSQKVLLLKRTEE 242

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783508|ref|XP_003250305.1| PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform 1 [Apis mellifera]

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 130/169 (76%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP +     F EN E+EVFS++ E E+CGWWK I+KM KG F VVE
Sbjct: 74  WQPESKFPFAQVRLPPTDGQKPEFSENMEIEVFSRSNEHEACGWWKAIIKMSKGGFQVVE 133

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y G +  +TEIV  ER+R KN NPPID  TFHK +IEVP D++EFAKME AHK+FQKAI 
Sbjct: 134 YSGWECAYTEIVASERLRAKNPNPPIDKNTFHKIEIEVPEDLREFAKMENAHKEFQKAIG 193

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + ++M+++MHFRNL+QKV+LLKRTE+
Sbjct: 194 AAVCRYVPERGVLLAISRHENLHRHSTMLQEMHFRNLSQKVLLLKRTEE 242

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859712|ref|XP_003705336.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like [Megachile rotundata]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 133/169 (78%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPESKF F+ VRLPP++   S F ENQE+EVFS++ E E+ GWWK ++KM KG F VVE
Sbjct: 36  WQPESKFPFAQVRLPPKDGQKSEFQENQEIEVFSRSNEHEAWGWWKAVIKMSKGGFQVVE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
           Y G +  +TEIV  ER+R KN+NPPID  TF+K +IEVP D++EFAKME AHK+FQKAI 
Sbjct: 96  YSGWECAYTEIVASERLRAKNSNPPIDKNTFYKIEIEVPEDLREFAKMENAHKEFQKAIG 155

Query: 137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
           AA+ RY+P++G L  ISR E   + +SM+++MHFRNL+QKV+LLKRTE+
Sbjct: 156 AAVCRYVPERGVLLAISRHENLHRHSSMLQEMHFRNLSQKVLLLKRTEE 204

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
FB|FBgn0028734	684	Fmr1 "Fmr1" [Drosophila melano	0.874	0.244	0.520	3.4e-42
UNIPROTKB|E9PSS6	519	Fmr1 "Fragile X mental retarda	0.884	0.325	0.467	1.6e-38
UNIPROTKB|E9PTH3	448	Fmr1 "Fragile X mental retarda	0.884	0.377	0.467	1.6e-38
RGD|2623	593	Fmr1 "fragile X mental retarda	0.884	0.284	0.467	1.7e-38
MGI|MGI:95564	614	Fmr1 "fragile X mental retarda	0.884	0.275	0.467	2.7e-38
UNIPROTKB|E9PSS4	614	Fmr1 "Fragile X mental retarda	0.884	0.275	0.467	2.7e-38
UNIPROTKB|A8MQB8	582	FMR1 "Fragile X mental retarda	0.884	0.290	0.455	5.5e-38
UNIPROTKB|G8JLE9	537	FMR1 "Fragile X mental retarda	0.884	0.314	0.455	5.5e-38
UNIPROTKB|Q8IXW7	297	FMR1 "FMR1 protein" [Homo sapi	0.884	0.569	0.455	5.5e-38
UNIPROTKB|K7GQ00	569	FMR1 "Uncharacterized protein"	0.884	0.297	0.461	5.5e-38

FB|FBgn0028734 Fmr1 "Fmr1" [Drosophila melanogaster (taxid:7227)]

 Score = 450 (163.5 bits), Expect = 3.4e-42, P = 3.4e-42
 Identities = 89/171 (52%), Positives = 121/171 (70%)

Query:    19 PES-KFQFSMVRLPPRETINSG---FVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHV 74
             PES K+ F  VRLPP ET+      F E  EVEVF++  + E+CGWW  I+KM K + + 
Sbjct:    36 PESMKYPFVNVRLPPEETVEVAAPIFEEGMEVEVFTRTNDRETCGWWVGIIKMRKAEIYA 95

Query:    75 VEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKA 134
             V Y+G ++++TEI    R+R KN+NPPI AKTF++F + VP +++E A+ +G HK+FQ+ 
Sbjct:    96 VAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFTLPVPEELREEAQKDGIHKEFQRT 155

Query:   135 IAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             I A +  Y  D  AL VIS+ E  QKRASM+KDMHFRNL+QKV+LLKRTE+
Sbjct:   156 IDAGVCNYSRDLDALIVISKFEHTQKRASMLKDMHFRNLSQKVMLLKRTEE 206

GO:0003729 "mRNA binding" evidence=ISS;IDA;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=IEP;IDA

GO:0007269 "neurotransmitter secretion" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0007268 "synaptic transmission" evidence=IMP

GO:0007411 "axon guidance" evidence=IGI;IMP

GO:0042331 "phototaxis" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0045475 "locomotor rhythm" evidence=IMP

GO:0016442 "RNA-induced silencing complex" evidence=TAS;IPI

GO:0003723 "RNA binding" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0006417 "regulation of translation" evidence=IMP;NAS

GO:0007416 "synapse assembly" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP;TAS

GO:0040011 "locomotion" evidence=TAS

GO:0050807 "regulation of synapse organization" evidence=IGI;IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0035068 "micro-ribonucleoprotein complex" evidence=TAS

GO:0007288 "sperm axoneme assembly" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0050774 "negative regulation of dendrite morphogenesis" evidence=IMP

GO:0007281 "germ cell development" evidence=IGI;IMP

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IGI

GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP

GO:0051964 "negative regulation of synapse assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0007279 "pole cell formation" evidence=IMP

GO:0045448 "mitotic cell cycle, embryonic" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0031507 "heterochromatin assembly" evidence=IMP

GO:0007349 "cellularization" evidence=IGI;IDA

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0050802 "circadian sleep/wake cycle, sleep" evidence=IMP

GO:0051028 "mRNA transport" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IGI;IMP

GO:0048134 "germ-line cyst formation" evidence=IGI;IMP

GO:0007614 "short-term memory" evidence=IMP

GO:0009794 "regulation of mitotic cell cycle, embryonic" evidence=IGI

UNIPROTKB|E9PSS6 Fmr1 "Fragile X mental retardation protein 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 79/169 (46%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  +EVP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E9PTH3 Fmr1 "Fragile X mental retardation protein 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 79/169 (46%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  +EVP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

GO:0003723 "RNA binding" evidence=IEA

RGD|2623 Fmr1 "fragile X mental retardation 1" [Rattus norvegicus (taxid:10116)]

 Score = 412 (150.1 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 79/169 (46%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  +EVP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

GO:0003723 "RNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISO;ISS

GO:0006417 "regulation of translation" evidence=TAS

GO:0007417 "central nervous system development" evidence=IEA;ISO

GO:0010494 "cytoplasmic stress granule" evidence=IEA;ISO

GO:0030425 "dendrite" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0045947 "negative regulation of translational initiation" evidence=ISO;ISS

GO:0051028 "mRNA transport" evidence=IEA

GO:0071598 "neuronal ribonucleoprotein granule" evidence=IEA;ISO

GO:0005844 "polysome" evidence=IDA

MGI|MGI:95564 Fmr1 "fragile X mental retardation syndrome 1" [Mus musculus (taxid:10090)]

 Score = 412 (150.1 bits), Expect = 2.7e-38, P = 2.7e-38
 Identities = 79/169 (46%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  +EVP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

GO:0003723 "RNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005844 "polysome" evidence=ISO

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0007417 "central nervous system development" evidence=IMP

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045947 "negative regulation of translational initiation" evidence=IDA

GO:0051028 "mRNA transport" evidence=IEA

GO:0071598 "neuronal ribonucleoprotein granule" evidence=IDA

UNIPROTKB|E9PSS4 Fmr1 "Fragile X mental retardation protein 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 412 (150.1 bits), Expect = 2.7e-38, P = 2.7e-38
 Identities = 79/169 (46%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  +EVP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0071598 "neuronal ribonucleoprotein granule" evidence=IEA

UNIPROTKB|A8MQB8 FMR1 "Fragile X mental retardation protein 1" [Homo sapiens (taxid:9606)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 77/169 (45%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQP+ +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  ++VP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEE 204

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G8JLE9 FMR1 "Fragile X mental retardation protein 1" [Homo sapiens (taxid:9606)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 77/169 (45%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQP+ +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  ++VP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEE 204

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q8IXW7 FMR1 "FMR1 protein" [Homo sapiens (taxid:9606)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 77/169 (45%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQP+ +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  ++VP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEE 204

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|K7GQ00 FMR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 78/169 (46%), Positives = 105/169 (62%)

Query:    17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
             WQPE +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct:    36 WQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query:    77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIA 136
             Y  C +T+ EIV  ER+R  N N P    TFHK  ++VP D+++    E AHKDF+KA+ 
Sbjct:    96 YAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKESAHKDFKKAVG 155

Query:   137 AAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQKVVLLKRTED 185
             A  V Y P+   L ++S +E   KRA M+ DMHFR+L  K+ L+ R E+
Sbjct:   156 AFSVTYDPEGYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEE 204

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NFU0	FMR1_DROME	No assigned EC number	0.5204	0.8743	0.2441	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
pfam05641	66	pfam05641, Agenet, Agenet domain	8e-04

>gnl|CDD|218672 pfam05641, Agenet, Agenet domain

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 40 FVENQEVEVFSKATEGESCGWWKVIV-KMIKGDFHVVEYL------GCQSTFTEIVPPER 92
          F +  EVEV S+    E   W++  V K +  D + VEY       G  +   E V   R
Sbjct: 1  FSKGSEVEVSSEEEGFEGA-WFRAKVLKELGEDKYKVEYDDLSLEDGGSAPLNETVDLRR 59

Query: 93 MR 94
          +R
Sbjct: 60 IR 61

This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family currently only matches one of the two Agenet domains in the FMR proteins. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	98.97
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.77
smart00561	96	MBT Present in Drosophila Scm, l(3)mbt, and verteb	97.46
PF11717	55	Tudor-knot: RNA binding activity-knot of a chromod	97.41
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	96.33
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	96.03
cd05162	87	PWWP The PWWP domain, named for a conserved Pro-Tr	95.16
PF00855	86	PWWP: PWWP domain; InterPro: IPR000313 Upon charac	94.79
PF02820	73	MBT: mbt repeat; InterPro: IPR004092 The function	94.75
cd05835	87	Dnmt3b_related The PWWP domain is an essential com	94.1
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	93.98
cd05836	86	N_Pac_NP60 The PWWP domain is an essential part of	93.25
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	92.47
cd05834	83	HDGF_related The PWWP domain is an essential part	91.22
PLN00104	450	MYST -like histone acetyltransferase; Provisional	91.04
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	90.99
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	90.7
smart00293	63	PWWP domain with conserved PWWP motif. conservatio	90.61
PF15057	124	DUF4537: Domain of unknown function (DUF4537)	90.37
KOG0162|consensus	1106		90.19
cd05840	93	SPBC215_ISWI_like The PWWP domain is a component o	90.06
PF00567	121	TUDOR: Tudor domain; InterPro: IPR008191 There are	89.12
cd05837	110	MSH6_like The PWWP domain is present in MSH6, a mi	87.59
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	87.27
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	86.53
COG2139	98	RPL21A Ribosomal protein L21E [Translation, riboso	83.95
cd05841	83	BS69_related The PWWP domain is part of BS69 prote	81.61
cd06080	80	MUM1_like Mutated melanoma-associated antigen 1 (M	81.17

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=98.97  E-value=1.2e-09  Score=77.40  Aligned_cols=59  Identities=31%  Similarity=0.392  Sum_probs=41.2

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEecc-EEEEEEeccCCc------ceeeecCCCcccCCCC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIKGD-FHVVEYLGCQST------FTEIVPPERMRQKNTN   99 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iKGd-f~vVey~~~d~~------~teIV~~erLR~~n~n   99 (191)
                      |..|+.|||++..+ +-.++|++|+|..+.++ .|.|+|......      .+|+|+..+|||..|.
T Consensus         1 F~~G~~VEV~s~e~-g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~   66 (68)
T PF05641_consen    1 FKKGDEVEVSSDED-GFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP   66 (68)
T ss_dssp             --TT-EEEEEE-SB-TT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred             CCCCCEEEEEEcCC-CCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence            67999999998554 44899999999999999 999999766433      7999999999998753

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.77  E-value=2e-08  Score=68.76  Aligned_cols=56  Identities=30%  Similarity=0.532  Sum_probs=49.3

Q ss_pred             CccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           39 GFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        39 ~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      .|.+|+.|||+++.    -.+||+|+|.++.| +.|.|.|.+.....++.|+..+|||..+
T Consensus         2 ~~~~G~~Ve~~~~~----~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~   58 (61)
T smart00743        2 DFKKGDRVEVFSKE----EDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPHPP   58 (61)
T ss_pred             CcCCCCEEEEEECC----CCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccCCC
Confidence            58899999999975    58999999999999 7999999974466899999999999764

Domain in plant sequences with possible chromatin-associated functions.

>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

Probab=97.46  E-value=0.00074  Score=51.13  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=49.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      ..-.|.+|+.+|+--+.   .|..+|.|+|..+.|....|.|.|||..|..++..+  .|+|++
T Consensus        24 ~~~~F~vGmkLEavD~~---~~~~i~vAtV~~v~g~~l~v~~dg~~~~~D~W~~~~S~~I~PvG   84 (96)
T smart00561       24 PPNGFKVGMKLEAVDPR---NPSLICVATVVEVKGYRLLLHFDGWDDKYDFWCDADSPDIHPVG   84 (96)
T ss_pred             ccCcccCCCEEEEECCC---CCceEEEEEEEEEECCEEEEEEccCCCcCCEEEECCCCCcccCc
Confidence            35679999999997654   688999999999999999999999999988887654  566654

Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F

Probab=97.41  E-value=0.00055  Score=46.58  Aligned_cols=50  Identities=24%  Similarity=0.387  Sum_probs=41.9

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEecc----EEEEEEeccCCcceeeecCCCcc
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIKGD----FHVVEYLGCQSTFTEIVPPERMR   94 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iKGd----f~vVey~~~d~~~teIV~~erLR   94 (191)
                      |.+|+.|-++.     .---|.+|+|..++.+    -|.|-|.|||..+.|.|+.++|+
T Consensus         1 ~~vG~~v~~~~-----~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i~   54 (55)
T PF11717_consen    1 FEVGEKVLCKY-----KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRIR   54 (55)
T ss_dssp             --TTEEEEEEE-----TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred             CCcCCEEEEEE-----CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence            57899999987     3456999999999876    79999999999999999999987

...

>smart00333 TUDOR Tudor domain

Probab=96.33  E-value=0.016  Score=38.41  Aligned_cols=53  Identities=19%  Similarity=0.369  Sum_probs=43.8

Q ss_pred             CccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           39 GFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        39 ~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      .+.+|+.|.|.. .+    -.|++|+|..+.+ ..+.|.|.+.  ...+.|+.+.||+..+
T Consensus         2 ~~~~G~~~~a~~-~d----~~wyra~I~~~~~~~~~~V~f~D~--G~~~~v~~~~l~~l~~   55 (57)
T smart00333        2 TFKVGDKVAARW-ED----GEWYRARIIKVDGEQLYEVFFIDY--GNEEVVPPSDLRPLPE   55 (57)
T ss_pred             CCCCCCEEEEEe-CC----CCEEEEEEEEECCCCEEEEEEECC--CccEEEeHHHeecCCC
Confidence            578999999976 32    3699999999999 7899999853  4578999999999754

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=96.03  E-value=0.02  Score=36.71  Aligned_cols=47  Identities=17%  Similarity=0.218  Sum_probs=36.2

Q ss_pred             CCeEEEEeecCCCCccceeeEEEEEEe-ccEEEEEEeccCCcceeeecCCCccc
Q psy985           43 NQEVEVFSKATEGESCGWWKVIVKMIK-GDFHVVEYLGCQSTFTEIVPPERMRQ   95 (191)
Q Consensus        43 gdeVEV~sran~~ep~gWW~a~V~~iK-Gdf~vVey~~~d~~~teIV~~erLR~   95 (191)
                      |+.+-+....    -..|++|+|..+. ++.+.|.|.+..  ..++|+.+.||+
T Consensus         1 G~~c~a~~~~----d~~wyra~V~~~~~~~~~~V~f~DyG--~~~~v~~~~l~~   48 (48)
T cd04508           1 GDLCLAKYSD----DGKWYRAKITSILSDGKVEVFFVDYG--NTEVVPLSDLRP   48 (48)
T ss_pred             CCEEEEEECC----CCeEEEEEEEEECCCCcEEEEEEcCC--CcEEEeHHHcCC
Confidence            5556665432    3579999999999 678999998654  578999999986

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids

Probab=95.16  E-value=0.045  Score=39.72  Aligned_cols=53  Identities=25%  Similarity=0.365  Sum_probs=41.4

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEec-----------cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIKG-----------DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iKG-----------df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      |..||-|-+-.+.     ..||||+|.....           ..|.|.|.| +.+| -.|..++|+|-..+
T Consensus         1 f~~GdlVwaK~~g-----~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg-~~~~-~wv~~~~l~pf~~~   64 (87)
T cd05162           1 FRPGDLVWAKMKG-----YPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG-DKTF-AWVGAERLKPFTEH   64 (87)
T ss_pred             CCCCCEEEEeCCC-----CCCCCEEEccccccchhhhccCCCCEEEEEEeC-CCcE-EEeCccceeeccch
Confidence            5789999987753     3699999987663           589999998 4445 78888889887654

The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.

>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []

Probab=94.79  E-value=0.059  Score=38.38  Aligned_cols=51  Identities=22%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEE--------eccEEEEEEeccCCcceeeecCCCcccCC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMI--------KGDFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~i--------KGdf~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      |.+||-|-+-.+     -..||||+|...        +++.+.|.|.|.+ +| ..|..++|+|-.
T Consensus         1 f~~GdlVWaK~~-----g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~-~~-~wv~~~~i~~f~   59 (86)
T PF00855_consen    1 FRPGDLVWAKLK-----GYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN-DY-AWVKPSNIKPFS   59 (86)
T ss_dssp             -STTEEEEEEET-----TSEEEEEEEEECCHCTSCSSSSTEEEEEETTTT-EE-EEEEGGGEEECC
T ss_pred             CCCCCEEEEEeC-----CCCCCceEEeecccccccCCCCCEEEEEecCCC-CE-EEECHHHhhChh
Confidence            578999999763     345999999988        3568999999876 55 566677777653

The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....

>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression

Probab=94.75  E-value=0.12  Score=36.78  Aligned_cols=51  Identities=14%  Similarity=0.111  Sum_probs=39.2

Q ss_pred             CeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           44 QEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        44 deVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      +.+|+..+.   +|...|.|.|..+.|+-..|.|.|++..+..++..+  +|.|++
T Consensus         1 MkLEa~d~~---~~~~~~vAtV~~v~g~~l~v~~dg~~~~~d~w~~~~S~~i~PvG   53 (73)
T PF02820_consen    1 MKLEAVDPR---NPSLICVATVVKVCGGRLLVRYDGWDDDYDFWCHIDSPRIFPVG   53 (73)
T ss_dssp             EEEEEEETT---ECCEEEEEEEEEEETTEEEEEETTSTGGGEEEEETTSTTEEETT
T ss_pred             CeEEEECCC---CCCeEEEEEEEEEeCCEEEEEEcCCCCCccEEEECCCCCeeecc
Confidence            356777654   467899999999999999999999998876666543  455543

The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....

>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis

Probab=94.10  E-value=0.059  Score=39.81  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEecc--------EEEEEEeccCCcceeeecCCCcccC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIKGD--------FHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iKGd--------f~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      |.+||-|-+-.+.     ..||||+|.....+        .+-|.|-|. .+ ...|+.+.|-|-
T Consensus         1 f~vGDlVWaK~kg-----~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs-~~-~a~v~~~~l~pf   58 (87)
T cd05835           1 FNVGDLVWGKIKG-----FPWWPGRVVSITVTSKRPPVVGMRWVTWFGS-GT-FSEVSVDKLSPF   58 (87)
T ss_pred             CCCCCEEEEecCC-----CCCCCeEEechhhcccccCCCCeEEEEEeCC-CC-EeEECHHHCcCh
Confidence            5689999887754     45999999887443        588999883 33 466677776664

In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.98  E-value=0.067  Score=34.65  Aligned_cols=28  Identities=32%  Similarity=0.692  Sum_probs=23.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      +....|..||.++|..+.++    +||.|+..
T Consensus        11 ~~eLs~~~Gd~i~v~~~~~~----~Ww~~~~~   38 (48)
T PF00018_consen   11 PDELSFKKGDIIEVLEKSDD----GWWKVRNE   38 (48)
T ss_dssp             TTBSEB-TTEEEEEEEESSS----SEEEEEET
T ss_pred             CCEEeEECCCEEEEEEecCC----CEEEEEEC
Confidence            35688999999999998887    99999865

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha

Probab=93.25  E-value=0.34  Score=35.80  Aligned_cols=51  Identities=14%  Similarity=0.115  Sum_probs=37.1

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEE---------EeccEEEEEEeccCCcceeeecCCCcccCC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKM---------IKGDFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~---------iKGdf~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      |+.||-|-+-.+.     ..||||+|..         -++..|.|.|-|-. +| -.|..+.|.|-.
T Consensus         1 f~~GDlVwaK~~g-----~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~-~~-~wv~~~~l~pF~   60 (86)
T cd05836           1 LKLGDLVWAKMKG-----FPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSE-NH-AWIKEENIKPYH   60 (86)
T ss_pred             CCCCCEEEEeCCC-----CCCCCEEEechhhhcccccCCCCeEEEEEeCCC-CE-EEECHHhCeech
Confidence            5689998887753     7799999965         23568999998854 34 667777777654

In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.47  E-value=0.13  Score=34.24  Aligned_cols=26  Identities=27%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             CCCCccCCCeEEEE-eecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVF-SKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~-sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+ .+.++    |||.|+.
T Consensus        14 ~~Ls~~~Gd~i~v~~~~~~~----~ww~~~~   40 (55)
T PF07653_consen   14 DELSFKKGDVIEVLGEKDDD----GWWLGEN   40 (55)
T ss_dssp             TB-EB-TTEEEEEEEEECST----SEEEEEE
T ss_pred             CceEEecCCEEEEEEeecCC----CEEEEEE
Confidence            35889999999999 44333    9999988

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF

Probab=91.22  E-value=0.43  Score=35.12  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=40.3

Q ss_pred             CccCCCeEEEEeecCCCCccceeeEEEEEEe-----ccEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           39 GFVENQEVEVFSKATEGESCGWWKVIVKMIK-----GDFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        39 ~~~egdeVEV~sran~~ep~gWW~a~V~~iK-----Gdf~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      +|+.||-|-+-.+.     .-||||+|....     +.-|.|.|.|.. +| -.|+...|-|-..
T Consensus         2 ~f~~GdlVwaK~kG-----yp~WPa~I~~~~~~~~~~~~~~V~FfGt~-~~-a~v~~~~l~pf~~   59 (83)
T cd05834           2 QFKAGDLVFAKVKG-----YPAWPARVDEPEDWKPPGKKYPVYFFGTH-ET-AFLKPEDLFPYTE   59 (83)
T ss_pred             CCCCCCEEEEecCC-----CCCCCEEEecccccCCCCCEEEEEEeCCC-CE-eEECHHHceeccc
Confidence            68899999987754     569999998887     468999999853 33 5577777766544

This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.

>PLN00104 MYST -like histone acetyltransferase; Provisional

Probab=91.04  E-value=0.84  Score=43.54  Aligned_cols=57  Identities=16%  Similarity=0.043  Sum_probs=47.4

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec-------c-EEEEEEeccCCcceeeecCCCcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG-------D-FHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-------d-f~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ...|.+|+.|-||...+.    .|..|+|..++-       + -|+|-|.|||....|+|+.+||+..+
T Consensus        51 ~~~~~VGekVla~~~~Dg----~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLdls~  115 (450)
T PLN00104         51 MLPLEVGTRVMCRWRFDG----KYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLDLDT  115 (450)
T ss_pred             cceeccCCEEEEEECCCC----CEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhccccc
Confidence            456899999999985444    477899998884       2 49999999999999999999998755

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=90.99  E-value=0.27  Score=32.41  Aligned_cols=30  Identities=20%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             CCCCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           32 PRETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        32 P~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      |..+....|..||.|.|..+.    ..|||.|+.
T Consensus         7 ~~~~dELs~~~Gd~i~v~~~~----~~~W~~g~~   36 (49)
T PF14604_consen    7 AQDPDELSFKKGDVITVLEKS----DDGWWYGRN   36 (49)
T ss_dssp             SSSTTB-EB-TTEEEEEEEES----STSEEEEEE
T ss_pred             CCCcCEeeEcCCCEEEEEEeC----CCCEEEEEE
Confidence            333457889999999999774    469999984

...

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=90.70  E-value=0.61  Score=41.16  Aligned_cols=57  Identities=14%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEecc--EEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD--FHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd--f~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      .....+||...+.. +.|+   .|+.|+|..|.++  -++|.|.|.++  +|+|.+..|+|...+
T Consensus        66 ~~~WkvGd~C~A~~-s~Dg---~~Y~A~I~~i~~~~~~~~V~f~gYgn--~e~v~l~dL~~~~~~  124 (264)
T PF06003_consen   66 NKKWKVGDKCMAVY-SEDG---QYYPATIESIDEEDGTCVVVFTGYGN--EEEVNLSDLKPSEGD  124 (264)
T ss_dssp             TT---TT-EEEEE--TTTS---SEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGEEETT--
T ss_pred             ccCCCCCCEEEEEE-CCCC---CEEEEEEEEEcCCCCEEEEEEcccCC--eEeeehhhhcccccc
Confidence            46889999999965 3444   3999999999975  89999999975  799999999998754

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>smart00293 PWWP domain with conserved PWWP motif

Probab=90.61  E-value=0.69  Score=31.93  Aligned_cols=50  Identities=18%  Similarity=0.286  Sum_probs=37.2

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEe------------ccEEEEEEeccCCcceeeecCCCcccC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIK------------GDFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iK------------Gdf~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      |..||-|-+-++     -..||+|+|..-.            ...|.|.|.|-. +| -.|+.++|.|.
T Consensus         1 f~~GdlVwaK~~-----G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~-~~-awv~~~~l~p~   62 (63)
T smart00293        1 FKPGDLVWAKMK-----GFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDK-DT-AWISSSKLFPL   62 (63)
T ss_pred             CCCCCEEEEECC-----CCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCC-CE-EEECccceeeC
Confidence            467899888775     3559999997553            237888998754 35 88999888874

conservation of Pro-Trp-Trp-Pro residues

>PF15057 DUF4537: Domain of unknown function (DUF4537)

Probab=90.37  E-value=0.88  Score=35.80  Aligned_cols=81  Identities=12%  Similarity=0.004  Sum_probs=53.4

Q ss_pred             eEEEEeecCCCCcccccccCcccccCCCCCCCCCccCCCeEEEEeecCCCCccceeeEEEE------EEeccEEEEEEec
Q psy985            6 FNVSNPFSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVK------MIKGDFHVVEYLG   79 (191)
Q Consensus         6 ~~v~V~f~eN~Wqpe~~vPf~~VRlPP~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~------~iKGdf~vVey~~   79 (191)
                      -...|.| ++...  +.+|.+++-.=-.. ....+.+||.|-+-   .+...+.|-||+|.      ..++++|.|.|- 
T Consensus        26 ~~~lV~f-~~~~~--~~v~~~~iI~~~~~-~~~~L~~GD~VLA~---~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~-   97 (124)
T PF15057_consen   26 GQFLVEF-DDGDT--QEVPISDIIALSDA-MRHSLQVGDKVLAP---WEPDDCRYGPGTVIAGPERRASEDKEYTVRFY-   97 (124)
T ss_pred             CEEEEEE-CCCCE--EEeChHHeEEccCc-ccCcCCCCCEEEEe---cCcCCCEEeCEEEEECccccccCCceEEEEEE-
Confidence            3567788 44433  35666666322222 26788999999998   44445669999999      668889999995 


Q ss_pred             cCCcceeeecCCCcccC
Q psy985           80 CQSTFTEIVPPERMRQK   96 (191)
Q Consensus        80 ~d~~~teIV~~erLR~~   96 (191)
                       |.+ +.-|+++.++..
T Consensus        98 -ng~-~~~vp~~~~~~I  112 (124)
T PF15057_consen   98 -NGK-TAKVPRGEVIWI  112 (124)
T ss_pred             -CCC-CCccchhhEEEC
Confidence             443 455666655543

>KOG0162|consensus

Probab=90.19  E-value=0.27  Score=49.78  Aligned_cols=26  Identities=19%  Similarity=0.560  Sum_probs=19.0

Q ss_pred             CccCCCeEEEEeecCCCCccceeeEEEEEE
Q psy985           39 GFVENQEVEVFSKATEGESCGWWKVIVKMI   68 (191)
Q Consensus        39 ~~~egdeVEV~sran~~ep~gWW~a~V~~i   68 (191)
                      .|+.||+||+-.    .+|.|||+|++..-
T Consensus      1069 s~~~~diIei~~----edpSGWw~gk~~~k 1094 (1106)
T KOG0162|consen 1069 SFKKGDIIEIMR----EDPSGWWLGKLNGK 1094 (1106)
T ss_pred             cccCCCEEEEec----cCCCcchhhccCCc
Confidence            456678877743    57999999995443

>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S

Probab=90.06  E-value=0.52  Score=35.42  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=36.2

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEE--------------EeccEEEEEEeccCCcceeeecCCCcccCC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKM--------------IKGDFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~--------------iKGdf~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      |..||-|-+-.+.     +-||+|+|..              .++..|-|.|.|. .+| -.|....|.|..
T Consensus         1 f~~GDlVwaK~~G-----yPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~-~~~-~Wv~~~~l~pl~   65 (93)
T cd05840           1 FQPGDRVLAKVKG-----FPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPD-GDY-YWVPNKDLKPLT   65 (93)
T ss_pred             CCCCCEEEEeCCC-----CCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCC-CcE-EEEChhhcccCC
Confidence            5679999998864     5699999953              1234788898874 344 566777777653

pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.

>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []

Probab=89.12  E-value=1.3  Score=31.83  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=39.9

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEE-EEEeccEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIV-KMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V-~~iKGdf~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      .....|+-+-++...++    +|.+|+| ....++.+.|.|.  |-..++.|+...||+..+
T Consensus        50 ~~~~~~~~~~~~~~~~~----~w~Ra~I~~~~~~~~~~V~~i--D~G~~~~v~~~~l~~l~~  105 (121)
T PF00567_consen   50 PESNPGEGCLCVVSEDG----RWYRAVITVDIDENQYKVFLI--DYGNTEKVSASDLRPLPP  105 (121)
T ss_dssp             ST--TTEEEEEEETTTS----EEEEEEEEEEECTTEEEEEET--TTTEEEEEEGGGEEE--H
T ss_pred             cccccCCEEEEEEecCC----ceeeEEEEEecccceeEEEEE--ecCceEEEcHHHhhhhCH
Confidence            34556666655554444    9999999 7777779999998  667789999999999874

Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....

>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS

Probab=87.59  E-value=0.82  Score=35.16  Aligned_cols=55  Identities=13%  Similarity=0.198  Sum_probs=41.1

Q ss_pred             CccCCCeEEEEeecCCCCccceeeEEEEE--------------EeccEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           39 GFVENQEVEVFSKATEGESCGWWKVIVKM--------------IKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        39 ~~~egdeVEV~sran~~ep~gWW~a~V~~--------------iKGdf~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      +|..||-|-+-.+.     .-||||.|..              -+...|-|+|.|-..+| -.|..+.|.|-...
T Consensus         2 ~~~~GdlVWaK~~g-----~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~-aWv~~~~l~pf~~~   70 (110)
T cd05837           2 KYQVGDLVWAKVSG-----YPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPER-AWISEKSLKPFKGS   70 (110)
T ss_pred             CCCCCCEEEEeCCC-----CCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCE-EEecHHHccccCCc
Confidence            57889999987754     5699999983              12248999999876555 58888888886644

The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro

>smart00326 SH3 Src homology 3 domains

Probab=87.27  E-value=1.4  Score=27.56  Aligned_cols=27  Identities=26%  Similarity=0.543  Sum_probs=22.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....+..||.|+|..+.    ..|||.++..
T Consensus        17 ~~l~~~~Gd~v~v~~~~----~~~w~~~~~~   43 (58)
T smart00326       17 DELSFKKGDIITVLEKS----DDGWWKGRLG   43 (58)
T ss_pred             CCCCCCCCCEEEEEEcC----CCCeEEEEeC
Confidence            45788999999999876    4699999765

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=86.53  E-value=1.6  Score=27.07  Aligned_cols=27  Identities=26%  Similarity=0.540  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....+..||.|.|...    ...|||.++..
T Consensus        14 ~~l~~~~Gd~v~v~~~----~~~~w~~~~~~   40 (54)
T cd00174          14 DELSFKKGDIIEVLEK----SDDGWWEGRLL   40 (54)
T ss_pred             CCCCCCCCCEEEEEEc----CCCCeEEEEEC
Confidence            4678899999999987    34689999754

>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]

Probab=83.95  E-value=2.8  Score=32.35  Aligned_cols=62  Identities=18%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             CCCCccCCCeEEEEeecC--CCCcc---ceeeEEEEEEeccEEEEEEeccCCcceeeecCCCcccCC
Q psy985           36 INSGFVENQEVEVFSKAT--EGESC---GWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran--~~ep~---gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      +-.+|.+||.|.+-.-..  ..-|.   -=-.|+|.-++|+-|+|+-...+..-+-||..+.|||..
T Consensus        29 ~l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k~K~liv~peHLk~~~   95 (98)
T COG2139          29 YLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNKEKTLIVRPEHLKPQK   95 (98)
T ss_pred             HHhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCceEEEEeCHHHccccc
Confidence            556899999999966432  22332   334679999999999999998888899999999999864

>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions

Probab=81.61  E-value=2.7  Score=31.30  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...||-|-+-.+.     ..||+|+|....+.-|-|.|-|... -.-.|+...|.|-+.+
T Consensus         7 ~~p~dLVwAK~kG-----yp~WPAkV~~~~~~~~~V~FFG~t~-~~a~v~~~~i~~~~~~   60 (83)
T cd05841           7 RPPHELVWAKLKG-----FPYWPAKVMRVEDNQVDVRFFGGQH-DRAWIPSNNIQPISTE   60 (83)
T ss_pred             CCCCCEEEEeCCC-----CCCCCEEEeecCCCeEEEEEcCCCC-CeEEEehHHeeehhhh
Confidence            4567777665543     6799999999999999999998443 3467777777765543

BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.

>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA)

Probab=81.17  E-value=4.4  Score=29.95  Aligned_cols=51  Identities=20%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEec--cEEEEEEeccCCcceeeecCCCcccC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iKG--df~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      |..||-|-.-.+     -+-||||+|..+..  .-|-|.|.|.+.+ ...+..+.|-|-
T Consensus         1 f~~gdlVWaK~~-----g~P~WPa~I~~~~~~~~k~~V~FfG~~~~-~a~~~~~~l~p~   53 (80)
T cd06080           1 FEKNDLVWAKIQ-----GYPWWPAVIKSISRKKQKARVNFIGDNMQ-SEKKGIRVVKRW   53 (80)
T ss_pred             CCCCCEEEEeCC-----CCCCCCEEEeeecCCCCEEEEEEeCCCCc-eeccchhhcccc
Confidence            467787777554     36699999988853  4788999988632 333444444443

MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
2bkd_N	134	Structure Of The N-Terminal Domain Of Fragile X Men		7e-22
3kuf_A	131	The Crystal Structure Of The Tudor Domains From Fxr		1e-20
3h8z_A	128	The Crystal Structure Of The Tudor Domains From Fxr		2e-19

>pdb|2BKD|N Chain N, Structure Of The N-Terminal Domain Of Fragile X Mental Retardation Protein Length = 134

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 60/99 (60%)
Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQP+ +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct: 36  WQPDRQIPFXDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95
Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVP 115
           Y  C +T+ EIV  ER+R  N N P    TF K  ++VP
Sbjct: 96  YAACDATYNEIVTIERLRSVNPNKPATKDTFXKIKLDVP 134

>pdb|3KUF|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr1 Length = 131

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 60/97 (61%)
Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F+ VRLPP   I     E  EVEV+S+A + E CGWW   V+M+KG+F+V+E
Sbjct: 35  WQPERQVPFNEVRLPPPPDIKKEISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIE 94
Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIE 113
           Y  C +T+ EIV  ER+R  N N  +   TF K  ++
Sbjct: 95  YAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVD 131

>pdb|3H8Z|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr2 Length = 128

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 53/91 (58%)
Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQ E +  F  VRLPP    N    E  EVEV+S+A E E CGWW   V+  KGDF+V+E
Sbjct: 38  WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRXXKGDFYVIE 97
Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTF 107
           Y  C +T+ EIV  ER+R  N NP     +F
Sbjct: 98  YAACDATYNEIVTLERLRPVNPNPLATKGSF 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	4e-35

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Length = 128

 Score =  119 bits (298), Expect = 4e-35
 Identities = 44/91 (48%), Positives = 55/91 (60%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQ E +  F  VRLPP    N    E  EVEV+S+A E E CGWW   V+M+KGDF+V+E
Sbjct: 38  WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIE 97

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTF 107
           Y  C +T+ EIV  ER+R  N NP     +F
Sbjct: 98  YAACDATYNEIVTLERLRPVNPNPLATKGSF 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	100.0
3sd4_A	69	PHD finger protein 20; tudor domain, transcription	98.18
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	98.04
2f5k_A	102	MORF-related gene 15 isoform 1; beta barrel, gene	98.0
3m9q_A	101	Protein MALE-specific lethal-3; chromodomain, MSL3	97.72
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	97.63
3m9p_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	97.61
3oa6_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	97.36
2k3y_A	136	Chromatin modification-related protein EAF3; dimet	97.33
2lrq_A	85	Protein MRG15, NUA4 complex subunit EAF3 homolog;	96.42
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	97.28
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	97.27
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	97.26
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	97.17
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	97.01
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	97.0
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	96.82
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	96.77
2d9t_A	78	Tudor domain-containing protein 3; structural geno	96.75
1wjq_A	107	KIAA1798 protein; MBT domain, structural genomics,	96.71
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	96.62
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	96.51
2biv_A	243	SCML2 protein, sex COMB on midleg-like protein 2;	96.24
2r58_A	265	Polycomb protein SCM; MBT repeat, sex COMB on midl	96.16
2r58_A	265	Polycomb protein SCM; MBT repeat, sex COMB on midl	96.07
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	95.99
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	95.96
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	95.86
2biv_A	243	SCML2 protein, sex COMB on midleg-like protein 2;	95.69
2eqk_A	85	Tudor domain-containing protein 4; structural geno	95.67
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	95.63
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	95.01
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	94.9
1oz2_A	331	Lethal(3)malignant brain tumor-like protein; prope	94.7
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	93.69
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	94.64
3ut1_A	324	Lethal(3)malignant brain tumor-like protein 3; chr	94.51
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	94.49
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	94.43
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	94.41
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	94.39
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	94.27
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	94.22
2bud_A	92	Males-absent on the first protein; transferase, MO	94.06
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	94.0
1wjr_A	127	KIAA1617 protein; MBT domain, structural genomics,	93.98
3bdl_A	570	Staphylococcal nuclease domain-containing protein	93.91
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	93.9
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	93.88
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	93.82
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	93.8
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	93.77
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	93.61
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	93.57
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	93.54
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	93.52
1oz2_A	331	Lethal(3)malignant brain tumor-like protein; prope	93.47
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	93.44
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	93.43
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	93.37
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	93.36
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	93.28
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	93.27
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	93.23
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	93.16
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	93.14
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	93.13
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	93.01
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	92.98
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	92.93
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	92.81
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	92.8
3ut1_A	324	Lethal(3)malignant brain tumor-like protein 3; chr	92.74
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	92.73
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	92.65
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	92.65
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	92.64
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	92.59
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	92.51
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	92.48
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	92.46
3e9g_A	130	Chromatin modification-related protein EAF3; chrom	92.44
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	92.44
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	92.41
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	92.36
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	92.28
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	92.21
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	92.18
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	92.08
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	92.08
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	92.06
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	91.98
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	91.95
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	91.95
3feo_A	437	MBT domain-containing protein 1; MBTL1, structural	91.94
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	91.89
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	91.81
2gfu_A	134	DNA mismatch repair protein MSH6; PWWP domain, tud	91.8
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	91.79
2daq_A	110	WHSC1L1 protein, isoform long; PWWP domain, struct	91.78
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	91.78
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	91.76
2hqx_A	246	P100 CO-activator tudor domain; human P100 tudor d	91.76
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	91.69
3u23_A	65	CD2-associated protein; structural genomics, struc	91.67
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	91.63
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	91.61
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	91.6
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	91.56
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	91.5
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	91.45
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	91.43
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	91.4
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	91.39
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	91.39
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	91.37
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	91.37
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	91.3
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	91.25
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	91.24
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	91.2
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	91.15
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	91.12
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	91.12
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	91.07
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	91.03
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	90.95
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	90.91
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	90.9
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	90.86
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	90.85
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	90.84
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	90.8
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	90.73
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	90.73
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	90.72
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	90.64
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	90.63
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	90.62
4fu6_A	153	PC4 and SFRS1-interacting protein; structural geno	90.6
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	90.6
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	90.55
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	90.47
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	90.43
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	90.43
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	90.33
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	90.3
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	90.13
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	90.13
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	90.11
3feo_A	437	MBT domain-containing protein 1; MBTL1, structural	89.96
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	89.94
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	89.9
1ri0_A	110	Hepatoma-derived growth factor; HDGF, HATH domain,	89.83
4b9w_A	201	TDRD1, tudor domain-containing protein 1; replicat	89.78
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	89.75
3h6z_A	447	Polycomb protein SFMBT; MBT, MBR repeat, aromatic	89.73
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	89.68
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	89.64
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	89.54
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	89.47
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	89.46
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	89.4
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	89.4
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	89.37
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	89.35
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	89.33
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	89.32
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	89.27
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	89.25
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	89.17
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	89.14
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	89.08
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	89.05
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	88.92
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	88.9
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	88.87
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	88.82
3f70_A	456	Lethal(3)malignant brain tumor-like 2 protein; MBT	88.7
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	88.65
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	88.57
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	88.52
1i07_A	60	Epidermal growth factor receptor kinase substrate	88.44
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	88.35
4b9x_A	226	TDRD1, tudor domain-containing protein 1; replicat	88.3
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	88.29
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	88.29
3f70_A	456	Lethal(3)malignant brain tumor-like 2 protein; MBT	88.29
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	88.26
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	88.25
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	88.15
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	88.13
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	88.11
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	88.05
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	88.01
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	87.84
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	87.83
1wxb_A	68	Epidermal growth factor receptor pathway substrate	87.72
2l89_A	108	PWWP domain-containing protein 1; histone binding,	87.68
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	87.67
2qnd_A	144	FMR1 protein; KH domain, eukaryotic KH domains, ta	87.67
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	87.39
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	87.36
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	87.23
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	87.22
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	87.1
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	87.07
1h3z_A	109	Hypothetical 62.8 kDa protein C215.07C; nuclear pr	87.02
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	86.97
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	86.97
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	86.94
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	86.89
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	86.81
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	86.4
3pfs_A	158	Bromodomain and PHD finger-containing protein 3; s	86.35
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	86.25
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	86.14
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	85.97
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	85.66
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	85.47
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	85.02
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	84.86
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	84.79
1khc_A	147	DNA cytosine-5 methyltransferase 3B2; five beta-sh	84.75
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	84.59
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	84.52
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	84.1
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	84.06
3h6z_A	447	Polycomb protein SFMBT; MBT, MBR repeat, aromatic	83.61
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	83.55
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	83.48
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	82.81
3llr_A	154	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	82.67
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	81.8
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	81.52
3qby_A	94	Hepatoma-derived growth factor-related protein 2;	81.41
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	81.3
1awj_A	77	ITK; transferase, regulatory intramolecular comple	81.06
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	80.98
1u3o_A	82	Huntingtin-associated protein-interacting protein;	80.65

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=100.00  E-value=4.3e-44  Score=282.57  Aligned_cols=100  Identities=46%  Similarity=0.837  Sum_probs=82.8

Q ss_pred             EEEEeecCCCCcccccccCcccccCCCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCccee
Q psy985            7 NVSNPFSLLRWQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTE   86 (191)
Q Consensus         7 ~v~V~f~eN~Wqpe~~vPf~~VRlPP~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~te   86 (191)
                      +++|+| +|+|||+++|||++|||||+++.+.+|.+||+||||+++|++||||||+|+|+|+||+||+|+|+|||++|||
T Consensus        29 ~~~V~f-~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~f~~V~y~~~~~~~~E  107 (128)
T 3h8z_A           29 SVTIFF-ENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNE  107 (128)
T ss_dssp             EEEEEE-TTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEETTEEEEEETTC----CE
T ss_pred             cEEEEE-ccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeCCEEEEEEcCCCCCcce
Confidence            689999 9999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCcccCCCCCCCCcCce
Q psy985           87 IVPPERMRQKNTNPPIDAKTF  107 (191)
Q Consensus        87 IV~~erLR~~n~n~pi~~~~f  107 (191)
                      ||+++||||+|+|+||+++||
T Consensus       108 iV~~~rlR~~n~~~p~~~~~f  128 (128)
T 3h8z_A          108 IVTLERLRPVNPNPLATKGSF  128 (128)
T ss_dssp             EECGGGEEECCCCCCC-----
T ss_pred             EEehhheEeCCCCCCcccCCC
Confidence            999999999999999999998

>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A

Probab=98.18  E-value=6.4e-06  Score=57.55  Aligned_cols=60  Identities=12%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             CCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEE--eccEEEEEEeccCCcceeeecCCC--cccC
Q psy985           32 PRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMI--KGDFHVVEYLGCQSTFTEIVPPER--MRQK   96 (191)
Q Consensus        32 P~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~i--KGdf~vVey~~~d~~~teIV~~er--LR~~   96 (191)
                      |+......|++|+.+|+..+.+.     |+.|+|..+  .|..+.|.|.||+..|.++|..+.  |+|+
T Consensus         5 p~~~~~~~F~vGmkLEa~d~~~p-----~~~AtV~~v~~~~~~~~VhfdGw~~~~D~W~~~dS~~i~Pv   68 (69)
T 3sd4_A            5 PPNRRGISFEVGAQLEARDRLKN-----WYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYLRPL   68 (69)
T ss_dssp             CCCCTTCCCSTTCEEEEECTTSC-----EEEEEEEEEETTTTEEEEEETTSCGGGCEEEETTCTTEECC
T ss_pred             CCCCCCCCcCCCCEEEEEECCCC-----ccccEEEEEeccCCEEEEEeCCCCCCCCEEEcCCCCCeeEC
Confidence            34344678999999999976654     489999998  788999999999999999998764  5553

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=98.04  E-value=2e-05  Score=57.96  Aligned_cols=58  Identities=14%  Similarity=0.238  Sum_probs=50.3

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEe--ccEEEEEEeccCCcceeeecCC--CcccCCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPE--RMRQKNT   98 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK--Gdf~vVey~~~d~~~teIV~~e--rLR~~n~   98 (191)
                      ....|.+|+.||+.-+.+.     |..|+|..+.  |.-+.|.|.||+..|.++|..+  +|+|...
T Consensus        16 ~~~~F~vGmkLEA~D~~~~-----~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g~   77 (88)
T 2eqm_A           16 PGITFEIGARLEALDYLQK-----WYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER   77 (88)
T ss_dssp             SSCCCCSSCEEEEECTTSC-----EEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECCCC
T ss_pred             CcCcCCCCCEEEEEcCCCC-----eeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEecccc
Confidence            3578999999999976653     8899988776  7799999999999999999988  9999873

>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A

Probab=98.00  E-value=1e-05  Score=61.25  Aligned_cols=60  Identities=18%  Similarity=0.267  Sum_probs=49.9

Q ss_pred             CCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEe----ccEEEEEEeccCCcceeeecCCCcccCC
Q psy985           32 PRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIK----GDFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        32 P~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK----Gdf~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      |+.+....|.+|+.|.||.      -.-|+.|+|..++    +..|.|-|.||+..+.|+|+.+||+..|
T Consensus        15 ~~~~~~~~f~vGekVl~~~------~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t   78 (102)
T 2f5k_A           15 PKQDPKPKFQEGERVLCFH------GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYV   78 (102)
T ss_dssp             ---CCSCSCCTTCEEEEES------SSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESS
T ss_pred             cCCCCCcccCCCCEEEEEE------CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCC
Confidence            3333467899999999997      1369999999988    3389999999999999999999999886

>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0

Probab=97.72  E-value=8.7e-05  Score=56.09  Aligned_cols=61  Identities=8%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEec---------cEEEEEEeccCCcceeeecCCCcccCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG---------DFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG---------df~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ....|.+|+.|-+|.... ....-|+.|+|..++.         ..|.|-|.||++++.|.|+.+||+..|
T Consensus        16 ~~~~f~~GEkVLc~h~d~-~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~   85 (101)
T 3m9q_A           16 ETPLFHKGEIVLCYEPDK-SKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDT   85 (101)
T ss_dssp             CCCCCCTTCEEEEECCCT-TSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECC
T ss_pred             CCCcccCCCEEEEEecCC-CCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCC
Confidence            457899999999998422 2234599999999864         389999999999999999999999886

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=97.63  E-value=0.00011  Score=52.59  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=49.4

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEecc----EEEEEEeccCCcceeeecCCCcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD----FHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd----f~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ..|.+|+.|.|+...  ....-|.+|+|..++..    -|.|-|.||+..+.|.|+.+||+..+
T Consensus         4 ~~~~vGekV~~~~~d--~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~   65 (76)
T 2lcc_A            4 EPCLTGTKVKVKYGR--GKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPL   65 (76)
T ss_dssp             CCSSTTCEEEEEEEE--TTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSS
T ss_pred             cccCCCCEEEEEeCC--CCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccc
Confidence            478999999999863  22346999999988754    79999999999999999999998765

>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*

Probab=97.36  E-value=0.00038  Score=53.34  Aligned_cols=66  Identities=8%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             CCCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEe---cc------EEEEEEeccCCcceeeecCCCcccCC
Q psy985           31 PPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIK---GD------FHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        31 PP~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK---Gd------f~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      .|+.+....|.+|+.|-+|..-. ....-+|-|+|..+.   ++      -|.|-|.||..++.|.|+.+||+..|
T Consensus        11 ~~~~~~k~~F~~gEkVLc~h~d~-~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~n   85 (110)
T 3oa6_A           11 SASEGMKFKFHSGEKVLCFEPDP-TKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDT   85 (110)
T ss_dssp             -------CCSCTTCEEEEECSCT-TSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECC
T ss_pred             CCCCCCCcccCCCCEEEEEecCC-CCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCC
Confidence            34455678999999999998432 234567899998773   32      59999999999999999999999876

>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0003  Score=55.69  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec------------------------------c------------EEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG------------------------------D------------FHV   74 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG------------------------------d------------f~v   74 (191)
                      +..|.+|+.|-+|.      -..||.|+|.+++.                              +            -|.
T Consensus         7 ~~~f~~gekvl~~h------g~llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~   80 (136)
T 2k3y_A            7 EQEFALGGRVLAFH------GPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFF   80 (136)
T ss_dssp             GGSCCTTSEEEEEC------SSCEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHHTSCEEE
T ss_pred             ccccCCCCEEEEEE------CCeeEEEEEEEEEeccccccccccccccccccccccccccccccccccCcccccccceEE
Confidence            45789999999999      24599999998872                              2            799


Q ss_pred             EEEeccCCcceeeecCCCcccCC
Q psy985           75 VEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        75 Vey~~~d~~~teIV~~erLR~~n   97 (191)
                      |-|.||.+++.|+|+.+|||..|
T Consensus        81 VHY~GWn~rwDEWV~~dRil~~~  103 (136)
T 2k3y_A           81 IHYQGWKSSWDEWVGYDRIRAYN  103 (136)
T ss_dssp             ECCTTSCGGGCEEEETTTEEESC
T ss_pred             EEeCCcCCcceeeecHhhhhhCC
Confidence            99999999999999999999987

>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}

Probab=96.42  E-value=3.3e-05  Score=56.47  Aligned_cols=57  Identities=25%  Similarity=0.279  Sum_probs=49.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEec----cEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG----DFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG----df~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ....|.+|+.|.||..      ..|+.|+|..++-    .-|.|-|.||+..+.|+|+.+||+..|.
T Consensus         9 ~~~~~~~Gekv~~~~~------~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~   69 (85)
T 2lrq_A            9 ANTLFVDGERVLCFHG------PLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYND   69 (85)
Confidence            3578999999999982      2789999998872    3899999999999999999999999873

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=97.28  E-value=0.00087  Score=45.03  Aligned_cols=55  Identities=11%  Similarity=0.028  Sum_probs=44.7

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEec--cEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG--df~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ..+.+||.+-+....+.    .|++|+|..+.+  +-+.|.|.+..  .+|.|+...|||.++
T Consensus         2 ~~~~~G~~c~A~~s~Dg----~wYrA~I~~i~~~~~~~~V~f~DYG--n~e~v~~~~Lr~~~~   58 (59)
T 1mhn_A            2 QQWKVGDKCSAIWSEDG----CIYPATIASIDFKRETCVVVYTGYG--NREEQNLSDLLSPIC   58 (59)
T ss_dssp             CCCCTTCEEEEECTTTS----CEEEEEEEEEETTTTEEEEEETTTT--EEEEEEGGGCBCTTC
T ss_pred             CcCCcCCEEEEEECCCC----CEEEEEEEEEcCCCCEEEEEEEcCC--CEEEEcHHHeeCCCC
Confidence            35789999988653332    599999999985  68999998765  489999999999864

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=97.27  E-value=0.00088  Score=52.45  Aligned_cols=57  Identities=16%  Similarity=0.197  Sum_probs=48.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEe-----cc-EEEEEEeccCCcceeeecCCCcccCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIK-----GD-FHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK-----Gd-f~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ....|.+|+.|.||..  +   .-|+.|+|..++     |. -|+|-|.||+..+.|+|+.+||+-..
T Consensus         9 ~~~~~~vGe~v~~~~~--d---~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~~~~   71 (133)
T 1wgs_A            9 PEVTVEIGETYLCRRP--D---STWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTK   71 (133)
T ss_dssp             CCCCCCTTSEEEEEET--T---TEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCCTT
T ss_pred             cccccCCCCEEEEEeC--C---CCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhccccc
Confidence            3557999999999984  2   379999999987     33 79999999999999999999997543

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=97.26  E-value=0.00088  Score=45.84  Aligned_cols=55  Identities=7%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec--cEEEEEEeccCCcceeeecCCCcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG--df~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ...+.+||.+-+....|.    .|++|+|..+.+  +.+.|.|.+..+  +|.|+..+|||..
T Consensus         6 ~~~~~vGd~c~A~~s~Dg----~wYrA~I~~v~~~~~~~~V~fvdYGn--~e~V~~~~Lrpl~   62 (64)
T 4a4f_A            6 THSWKVGDKCMAVWSEDG----QCYEAEIEEIDEENGTAAITFAGYGN--AEVTPLLNLKPVE   62 (64)
T ss_dssp             SSCCCTTCEEEEECTTTS----SEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGEECCS
T ss_pred             CCCCCCCCEEEEEECCCC----CEEEEEEEEEcCCCCEEEEEEEecCC--EEEEeHHHcEeCC
Confidence            478999999999663333    599999999997  489999997754  8999999999974

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.17  E-value=0.0014  Score=48.18  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=50.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEecc----EEEEEEeccCCcceeeecCCCcccCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD----FHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd----f~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ....|.+|+.|.|+....+. -.-|..|+|..++..    -|+|-|.||+..+.|.|+.+||+-..
T Consensus         6 ~~~~~~vG~kv~v~~~~~~~-~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~~~~   70 (87)
T 2eko_A            6 SGGEIIEGCRLPVLRRNQDN-EDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLDLKK   70 (87)
T ss_dssp             SSCSCCTTCEEEBCEECTTC-CEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBCGGG
T ss_pred             ccccccCCCEEEEEEcccCC-CCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHccccc
Confidence            45689999999998853222 237999999998863    79999999999999999999997644

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0032  Score=46.93  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             ccCCCCC--CCCCccCCCeEEEEeecCCCCccceeeEEEEEEec----cEEEEEEeccCCcceeeecCCCcccCC
Q psy985           29 RLPPRET--INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG----DFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        29 RlPP~~~--~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG----df~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      -||.+.+  ....|.+|+.|-|+.   +   .-|..|+|..++.    --|+|-|.||+..+.|+|+.+||.-..
T Consensus        13 ~~~~~~~~~~~~~~~vG~kv~v~~---~---~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~l~~   81 (94)
T 2rnz_A           13 GLVPRGSHMSVDDIIIKCQCWVQK---N---DEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRINLDK   81 (94)
T ss_dssp             CSSCSSCSSCGGGCCTTEEEEEEC---S---SCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBCSSS
T ss_pred             CCccCCCccccccccCCCEEEEEE---C---CEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHccccc
Confidence            3565544  345689999999994   2   2699999999884    279999999999999999999997543

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=97.00  E-value=0.002  Score=47.24  Aligned_cols=56  Identities=11%  Similarity=0.057  Sum_probs=45.1

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEec--cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG--df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ..+.+||.+-+....|.    .|++|+|..+.+  +-|.|.|.+..+  +|.|++.+|||..+.
T Consensus         9 ~~~kvGd~C~A~ys~Dg----~wYrA~I~~i~~~~~~~~V~fiDYGN--~E~V~~~~Lrp~~~~   66 (88)
T 1g5v_A            9 QQWKVGDKCSAIWSEDG----CIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPICE   66 (88)
T ss_dssp             CCCCSSCEEEEECTTTC----CEEEEEEEEEETTTTEEEEEETTTCC--EEEEEGGGCBCCC--
T ss_pred             CCCCCCCEEEEEECCCC----CEEEEEEEEecCCCCEEEEEEecCCC--EEEEcHHHcccCChh
Confidence            47899999999663333    599999999986  689999987754  899999999997643

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.82  E-value=0.0025  Score=45.33  Aligned_cols=55  Identities=9%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+.+||.|.+...  |+   .|++|+|..+.+ +.|.|.|.+.   ..|.|+..+|||...+
T Consensus         7 ~~~~kvGd~clA~ws--Dg---~~Y~A~I~~v~~~~~~~V~f~Dy---n~e~v~~~~lrplp~~   62 (74)
T 2equ_A            7 GFDFKAGEEVLARWT--DC---RYYPAKIEAINKEGTFTVQFYDG---VIRCLKRMHIKAMPED   62 (74)
T ss_dssp             CCCCCTTCEEEEECS--SS---SEEEEEEEEESTTSSEEEEETTS---CEEEECGGGEECCCGG
T ss_pred             CCCCCCCCEEEEECC--CC---CEEEEEEEEECCCCEEEEEEecC---CeEEecHHHCeeCChh
Confidence            578999999999654  33   599999999987 5899999855   6899999999998643

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=96.77  E-value=0.0029  Score=41.56  Aligned_cols=51  Identities=14%  Similarity=0.206  Sum_probs=40.5

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEe--ccEEEEEEeccCCcceeeecCCCcccC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iK--Gdf~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      +++||.+-+....+.    .|++|+|..+.  ++.+.|.|.+..+  +|.|+...|||.
T Consensus         2 wk~G~~c~A~~s~Dg----~wYrA~I~~i~~~~~~~~V~fvDYGn--~e~v~~~~lrpi   54 (54)
T 3s6w_A            2 WKPGDECFALYWEDN----KFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPI   54 (54)
T ss_dssp             CCTTCEEEEEETTTT----EEEEEEEEEC--CCSEEEEEETTTCC--EEEEEGGGEECC
T ss_pred             CCCCCEEEEEECCCC----CEEEEEEEEEeCCCCEEEEEEEccCC--eEEEeHHHEEEC
Confidence            578999999653333    59999999985  4689999997754  899999999984

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=96.75  E-value=0.004  Score=44.21  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=46.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec--cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG--df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+.+||.+-+....+.    .|++|+|..+.+  +-+.|.|.+.  -.+|.|+...|||..+.
T Consensus         7 ~~~~~~G~~c~A~~s~Dg----~wYRA~I~~i~~~~~~~~V~fiDY--GN~e~V~~~~Lr~l~~~   65 (78)
T 2d9t_A            7 GKVWKPGDECFALYWEDN----KFYRAEVEALHSSGMTAVVKFTDY--GNYEEVLLSNIKPVQTE   65 (78)
T ss_dssp             CCCCCTTCEEEEECTTTC----CEEEEEEEEECSSSSEEEEEETTT--TEEEEEEGGGEEECCCC
T ss_pred             ccCCCcCCEEEEEECCCC----CEEEEEEEEEeCCCCEEEEEEEcC--CCeEEEcHHHeEeCCHH
Confidence            467899999999664333    599999999986  6899999855  45899999999998754

>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3

Probab=96.71  E-value=0.0053  Score=46.63  Aligned_cols=57  Identities=14%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      -.|.+|+.+||--+   ..|.-+|.|+|..+.|....|.|.|||..|..++..+  .|.|+.
T Consensus        12 ~~F~~GMKLEAvD~---~~p~~icvATV~~v~g~rl~v~fDGw~~~~D~W~~~dSpdIhPVG   70 (107)
T 1wjq_A           12 HGFQKKMKLEVVDK---RNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVG   70 (107)
T ss_dssp             SSCCSSCEEEEECT---TCTTCEEEEEEEEECSSCEEEECSSSCGGGCEEECTTCSSCEETT
T ss_pred             ccCCCCCEEEEEcC---CCCCcEEeEEEEEecCCEEEEEeCCCCCcCCEEEECCCCCcccCc
Confidence            46999999999854   4567799999999999999999999999998886554  455554

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=96.62  E-value=0.005  Score=43.74  Aligned_cols=57  Identities=12%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec--cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG--df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+.+||.+-+....+.    .|++|+|..+.+  +.+.|.|.+..+  +|.|+...|||..++
T Consensus        15 ~~~~kvGd~C~A~ys~Dg----~wYRA~I~~i~~~~~~~~V~fvDYGN--~e~V~~~~Lr~l~~~   73 (77)
T 3pnw_C           15 AKMWKPGDECFALYWEDN----KFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPIQTE   73 (77)
T ss_dssp             HTTCCTTCEEEEEETTTT----EEEEEEEEEECTTSSEEEEEETTTCC--EEEEEGGGEECC---
T ss_pred             cCCCCcCCEEEEEECCCC----CEEEEEEEEEeCCCCEEEEEEEcCCC--eEEEeHHHeEECChh
Confidence            567899999999653333    699999999964  589999997754  899999999997643

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0055  Score=45.29  Aligned_cols=55  Identities=11%  Similarity=0.056  Sum_probs=46.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEec----cEEEEEEeccCCcceeeecCCCcccC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG----DFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG----df~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      ....|.+|+.|-|+.  +    --|..|+|..++-    --|+|-|.||+..+.|.|+.+||.-.
T Consensus        20 ~~~~~~vG~kv~v~~--~----~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~l~   78 (92)
T 2ro0_A           20 SVDDIIIKCQCWVQK--N----DEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRINLD   78 (92)
T ss_dssp             CTTSCCTTCEEEEEE--T----TEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEETT
T ss_pred             ccccccCCCEEEEEE--C----CEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcccc
Confidence            345789999999995  2    2799999999884    27999999999999999999999754

>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A

Probab=96.24  E-value=0.012  Score=50.23  Aligned_cols=58  Identities=10%  Similarity=-0.019  Sum_probs=47.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeec--CCCcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVP--PERMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~--~erLR~~n   97 (191)
                      .-.|.+|+.+||--+   ..|..+|.|+|..+.|..+.|.|.|+|++|.-.+.  ...|.|++
T Consensus        60 ~~~f~vGmKLEa~D~---~~~~~~~vATV~~v~g~~l~l~~dG~d~~~DfW~~~~S~~I~PvG  119 (243)
T 2biv_A           60 VNDFKVGMKLEARDP---RNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVG  119 (243)
T ss_dssp             CCCCCTTCEEEEEET---TEEEEEEEEEEEEEETTEEEEEETTSCSSSCEEEETTCTTEECTT
T ss_pred             cccccCCCEEEEecC---CCCCcEEEEEEEEEeCCEEEEEECCCCCCCCEeecCCCCccccCh
Confidence            356999999999864   45789999999999999999999999988776654  34566664

>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*

Probab=96.16  E-value=0.013  Score=50.70  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=46.4

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecC--CCcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPP--ERMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~--erLR~~n   97 (191)
                      .-.|.+|+.+||--+   ..+..+|.|+|.++.|+.+.|.|-|+|..|.-.+..  ..|.|++
T Consensus        32 ~~~F~vGMKLEavDp---~~~~~icvATV~~v~g~~l~l~~DG~d~~~DfW~~~~S~~I~PvG   91 (265)
T 2r58_A           32 NNDFKIGMKLEALDP---RNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIG   91 (265)
T ss_dssp             CCCCCTTCEEEEEET---TEEEEEEEEEEEEEETTEEEEEETTSCSSCCEEEETTCTTEECTT
T ss_pred             ccccccCCEeEEecC---CCCCCEEEEEEEEEeCCEEEEEeCCCCCcCCEeEeCCCCCeeccc
Confidence            356999999999865   458899999999999999999999999877665443  3455553

>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*

Probab=96.07  E-value=0.022  Score=49.16  Aligned_cols=57  Identities=18%  Similarity=0.101  Sum_probs=48.2

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      -.|.+|+.+|+-   |...|+-+|.|+|..+.|+.+.|.|.|||..|..++..+  .|.|++
T Consensus       142 ~~F~vGMKLEav---D~~np~~icvATV~~v~g~rl~v~fDGw~~~~D~W~~~~Sp~I~PvG  200 (265)
T 2r58_A          142 NLFKVGQKLEAV---DKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAG  200 (265)
T ss_dssp             CCCCTTCEEEEE---CTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEEETTCTTEECTT
T ss_pred             cccccCcEEEec---cCCCCCCEEEEEEEEecCCEEEEEeCCCCCcCCEEEECCCCCeecCc
Confidence            469999999985   455678899999999999999999999999998888765  355554

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=95.99  E-value=0.015  Score=42.68  Aligned_cols=57  Identities=16%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEecc-EEEEEEeccCCcceeeecCCCcccCCCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNTNPP  101 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd-f~vVey~~~d~~~teIV~~erLR~~n~n~p  101 (191)
                      ...|.+||+|.+--     .-|.|++|+|..+.|+ .|.|.|-+   ..++.|....|||...+..
T Consensus        19 ~~~f~vGd~VlArW-----~D~~yYPAkI~sV~~~~~YtV~F~D---G~~etvk~~~IKp~~~~~~   76 (85)
T 3qii_A           19 SSEFQINEQVLACW-----SDCRFYPAKVTAVNKDGTYTVKFYD---GVVQTVKHIHVKAFSKDQN   76 (85)
T ss_dssp             --CCCTTCEEEEEC-----TTSCEEEEEEEEECTTSEEEEEETT---SCEEEEEGGGEEECC----
T ss_pred             CcccccCCEEEEEe-----CCCCEeeEEEEEECCCCeEEEEEeC---CCeEEecHHHcccCChhhc
Confidence            57899999999966     3589999999999996 99999974   5799999999999876543

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=95.96  E-value=0.14  Score=40.78  Aligned_cols=144  Identities=14%  Similarity=0.144  Sum_probs=83.7

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCCCcccCCCC---CCCCcCceeEEeec
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN---PPIDAKTFHKFDIE  113 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~erLR~~n~n---~pi~~~~f~k~~i~  113 (191)
                      ...+.+|+.+-+....+    -.|++|+|..+.++-+.|.|...  ..++.|+..+||+..+.   -|.-...+.-.-|+
T Consensus        49 ~~~~~~g~~c~a~~~~d----~~wyRa~V~~v~~~~~~V~~vDy--G~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~  122 (218)
T 2wac_A           49 SYTPKRGDLVAAQFTLD----NQWYRAKVERVQGSNATVLYIDY--GNKETLPTNRLAALPPAFSSEKPYATEYALALVA  122 (218)
T ss_dssp             SCCCCTTCEEEEECTTT----CCEEEEEEEEEETTEEEEEETTT--CCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEE
T ss_pred             CccCCcCCEEEEEECCC----CeEEEEEEEEecCCeEEEEEEec--CCeEEEchHHcccCChhhccCCcceeEEEECCEE
Confidence            35788999999976433    37999999999999999999844  45899999999998753   12222222222355


Q ss_pred             CChhHHHHHHhhhchHHHHHhhhc--cEEEEc-CCCCe-e-EEEeCc--hhhHhhhhhhhhhhhh-------hHHHHHHH
Q psy985          114 VPLDVQEFAKMEGAHKDFQKAIAA--AIVRYI-PDKGA-L-SVISRD--EACQKRASMIKDMHFR-------NLNQKVVL  179 (191)
Q Consensus       114 VPedLre~~~~~~~h~dF~kaiga--~~v~y~-pe~~~-L-vvls~~--e~~~kRA~mL~dmHfr-------~LrqK~~l  179 (191)
                      .|++ .+|  ...+..-|++.+..  +.+... .+.|. + +.|...  ...+ .+.|+..-+-+       .+..-+.-
T Consensus       123 ~p~~-~~w--~~eA~~~l~~lv~~k~v~~~v~~~d~g~~~~V~L~~~~~~~~i-n~~Lv~~G~A~~~~~~~~~~~~~~~~  198 (218)
T 2wac_A          123 LPTD-NED--KEEALRAFSEDVLNHKVQLNVELKVTGSPNLATLRDPTTKVDF-GKQLVAEGLVLAEQRGERKLKELVDQ  198 (218)
T ss_dssp             CCSS-HHH--HHHHHHHHHHHHBTCEEEEEEEECCTTSCEEEEEECTTTCCBH-HHHHHHTTSSEECCCCCGGGHHHHHH
T ss_pred             CCCC-cch--HHHHHHHHHHHhcCCEEEEEEEEEcCCceEEEEEEeCCCCccH-HHHHHHCCCcccccccchhHHHHHHH
Confidence            6762 233  23456678887742  333332 22455 4 434321  1122 33455544322       12222334


Q ss_pred             hhhhhhhhhcC
Q psy985          180 LKRTEDIDFKN  190 (191)
Q Consensus       180 ~~r~eea~~~~  190 (191)
                      +.+.|+.||+.
T Consensus       199 ~~~~e~~Ar~~  209 (218)
T 2wac_A          199 YKAAQEAARVA  209 (218)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            55677777764

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=95.86  E-value=0.021  Score=40.03  Aligned_cols=57  Identities=18%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEecc-EEEEEEeccCCcceeeecCCCcccCCCCCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNTNPPI  102 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd-f~vVey~~~d~~~teIV~~erLR~~n~n~pi  102 (191)
                      ..+.+||+|.+--     .-+.|++|+|..+.|+ .|.|.|-+   ..++.|....|||...+..+
T Consensus         5 ~~~~vGd~vmArW-----~D~~yYpA~I~si~~~~~Y~V~F~d---G~~etvk~~~ikp~~~~~~~   62 (67)
T 3p8d_A            5 SEFQINEQVLACW-----SDCRFYPAKVTAVNKDGTYTVKFYD---GVVQTVKHIHVKAFSKDQNI   62 (67)
T ss_dssp             CCCCTTCEEEEEC-----TTSCEEEEEEEEECTTSEEEEEETT---SCEEEEEGGGEEECC-----
T ss_pred             cccccCCEEEEEc-----CCCCEeeEEEEEECCCCeEEEEEeC---CceEEEeHHHcccCCccccc
Confidence            4789999999976     3578999999999997 99999974   57899999999998765433

>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A

Probab=95.69  E-value=0.036  Score=47.16  Aligned_cols=51  Identities=16%  Similarity=0.185  Sum_probs=45.1

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE   91 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e   91 (191)
                      -.|.+|+.+|+--+   ..|+-+|.|+|..+.|+.+.|.|-|||..|..++..+
T Consensus       170 ~~F~~GmKLEavD~---~~p~~icvATV~~v~g~rl~v~fDgw~~~~D~W~~~d  220 (243)
T 2biv_A          170 NNFKVGMKLEAIDK---KNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYD  220 (243)
T ss_dssp             CCCCTTCEEEEECT---TSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEEETT
T ss_pred             ccccCCCEEEEEcc---CCCCeEEEEEEEEecCCEEEEEECCCCCcCCEEEeCC
Confidence            47999999999865   4578899999999999999999999999998888765

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.67  E-value=0.026  Score=41.39  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+..||-|-|.+..+.    .|.+|+|..+.++=- ++-.=.|---.+.|+.++|||..++
T Consensus        19 ~~~~k~g~~vaak~~d~n----~WyRakV~~v~~~~~-veVl~~DyGn~~~V~~~~LR~L~~~   76 (85)
T 2eqk_A           19 PVKWENDMHCAVKIQDKN----QWRRGQIIRMVTDTL-VEVLLYDVGVELVVNVDCLRKLEEN   76 (85)
T ss_dssp             CCCCCSSCEEEEECSSSC----CEEEEEEEEECSSSE-EEEECTTTCCEEEEETTTEEECCHH
T ss_pred             ccCccCCCEEEEEeCCCC----eEEEEEEEEecCCCe-EEEEEEccCCEEEEEccccccCCHH
Confidence            578899999999876443    899999999999833 5555568778999999999998754

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=95.63  E-value=0.027  Score=40.40  Aligned_cols=57  Identities=9%  Similarity=0.053  Sum_probs=45.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEecc-EEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd-f~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+.+||.+-|....+    -.|++|+|..+.++ -+.|.|.+.  -.+|.|+...||+..+.
T Consensus        25 ~~~~~~G~~c~a~~~~d----~~wyRA~I~~~~~~~~~~V~fvDy--Gn~e~v~~~~lr~l~~~   82 (94)
T 3fdr_A           25 DLTVHVGDIVAAPLPTN----GSWYRARVLGTLENGNLDLYFVDF--GDNGDCPLKDLRALRSD   82 (94)
T ss_dssp             CCCCCTTCEEEEEETTT----TEEEEEEEEEECTTSCEEEEETTT--CCEEEECGGGCEECCGG
T ss_pred             CCCCCCCCEEEEEECCC----CeEEEEEEEEECCCCeEEEEEEcC--CCeEEEEHHHhhhcCHH
Confidence            36789999999865333    36999999999874 788999855  56899999999998643

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=95.01  E-value=0.054  Score=37.49  Aligned_cols=44  Identities=20%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPE   91 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~e   91 (191)
                      ....|..||.|+|+.+.++   -|||.|+.   .|..      |+ -++|-+++...
T Consensus        25 ~eLsf~~Gd~i~v~~~~~~---~gWw~g~~---~g~~------G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           25 SLLPFKRNDIITITFKDQE---NKWFMGQL---NGKE------GSFPVDHVEILLSD   69 (80)
T ss_dssp             SSCCBCSSEEEEEEEESSS---SSEEEEEE---TTEE------EEEEGGGEEEESSC
T ss_pred             CCcCCCCCCEEEEEEecCC---CCEEEEEE---CCcE------EEechHHEEECCCC
Confidence            5678999999999998754   24999974   3431      22 45677776544

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.90  E-value=0.053  Score=38.28  Aligned_cols=51  Identities=18%  Similarity=0.371  Sum_probs=35.3

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcccCCC
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR~~n~   98 (191)
                      +....|..||.|+|..+.+    .|||.|+.   .|..      |+ -++|-+.+...-.+..++
T Consensus        31 ~~eLs~~~Gd~i~v~~~~~----~gWw~g~~---~g~~------G~~P~~yv~~~~~~~~~~~~~   82 (88)
T 2cub_A           31 EDELSLIKGTKVIVMEKCS----DGWWRGSY---NGQV------GWFPSNYVTEEGDSPLGDHVG   82 (88)
T ss_dssp             TTBCCCCTTEEEEEEEECT----TSEEEEEE---TTEE------EEEEGGGEEECCCCCSSSCCC
T ss_pred             CCCcCCCCCCEEEEEEccC----CCeEEEEE---CCcE------EEEehHHEEECCCcccccCCC
Confidence            3568899999999999874    38999987   4431      21 456777776665555543

>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*

Probab=94.70  E-value=0.12  Score=45.65  Aligned_cols=58  Identities=12%  Similarity=0.112  Sum_probs=47.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCCC--cccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPER--MRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~er--LR~~n   97 (191)
                      .-.|.+|+.+|+--   ..+|..+|.|+|..+.|+-+.|.|-|||..|.-++..+.  |.|++
T Consensus       146 ~~~F~vGmKLEavD---~~np~~icvATV~~v~g~r~~v~~Dg~~~~~D~w~~~~S~~I~PVG  205 (331)
T 1oz2_A          146 PLGFQVGMKLEAVD---RMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVG  205 (331)
T ss_dssp             CTTCCTTCEEEEEC---TTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEECTTCTTEECTT
T ss_pred             ccccccccEEEecc---CCCCCcEEEEEEEEeeCCEEEEEeCCCCCccCEEEecCCCCccCCc
Confidence            34699999999984   456788999999999999888999999998888876643  44554

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=93.69  E-value=0.0056  Score=44.45  Aligned_cols=53  Identities=13%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ..+..||.|-+.-.  |   ..|++|+|..+.+ +.|.|.|.+   -..|.|+.++|||...
T Consensus         5 ~~~kvGd~clAkws--D---g~wY~A~I~~v~~~~~y~V~F~D---Gn~E~V~~s~LrPl~~   58 (81)
T 2ldm_A            5 SEFQINEQVLASWS--D---SRFYPAKVTAVNKDGTYTVKFYD---GVVQTVKHIHVKAFSK   58 (81)
Confidence            46889999999443  3   2699999999966 489999985   4689999999999854

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.64  E-value=0.033  Score=39.41  Aligned_cols=55  Identities=15%  Similarity=0.376  Sum_probs=38.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE--EEeccEEEEEEeccCCcceeeecCCCcccCCCCCCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK--MIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPI  102 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~--~iKGdf~vVey~~~d~~~teIV~~erLR~~n~n~pi  102 (191)
                      ....|..||.|+|+.+.+    -|||.|+..  ...|=|        -++|-+++.....|.....+|-
T Consensus        32 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~~~~g~~G~f--------P~~yv~~~~~~~~~~~~~~~p~   88 (90)
T 2yup_A           32 VELSFRKGEHICLIRKVN----ENWYEGRITGTGRQGIF--------PASYVQVSREPRLRLCDDSGPS   88 (90)
T ss_dssp             SBCCCCTTCEEEESSCCC----SSEEEEECTTTCCEEEE--------EGGGEEEEECCCCCCCCCSSCC
T ss_pred             CcCCCCCCCEEEEEEEcC----CCeEEEEECCCCCEEEE--------ehHHeEEcCCCccccccCCCCC
Confidence            467899999999998644    589999875  222222        4568888887777776655543

>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A

Probab=94.51  E-value=0.089  Score=46.45  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             CcccccCCCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeee
Q psy985           25 FSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIV   88 (191)
Q Consensus        25 f~~VRlPP~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV   88 (191)
                      |.+++..|..  .-.|.+||.+||--+   ..|...|.|.|.++-|....|.|.|+++++.=.+
T Consensus        24 Fk~~~~~~~~--~~~F~~GMKLE~~D~---~~~~~~~vAtV~~v~G~rl~l~~dg~~~~~dFW~   82 (324)
T 3ut1_A           24 FKEHQSFPYN--KNGFKVGMKLEGVDP---EHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWV   82 (324)
T ss_dssp             SCTTTSCCSS--CCCCCTTCEEEEEET---TEEEEEEEEEEEEEETTEEEEEETTSCGGGCEEE
T ss_pred             ccCcccCCCc--CCcccCCCEEEEecC---CCCCcEEEEEEEEEECCEEEEEECCCCCCCCEEE
Confidence            7787665532  356999999999854   4578899999999999988999999876554333

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=94.49  E-value=0.036  Score=40.92  Aligned_cols=55  Identities=9%  Similarity=0.022  Sum_probs=44.0

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ..+.+|+.+-+....+.    .|++|+|..+.+ +-+.|.|..+  -.+|.|+...||+..+
T Consensus        31 ~~~~~G~~c~a~~~~d~----~wyRA~V~~~~~~~~~~V~fvDy--Gn~e~v~~~~Lr~l~~   86 (110)
T 2diq_A           31 LTVHVGDIVAAPLPTNG----SWYRARVLGTLENGNLDLYFVDF--GDNGDCPLKDLRALRS   86 (110)
T ss_dssp             CCCCTTCEEEECCTTTC----SCEEEEECCCCSSSCEEEEETTT--CCEEEECGGGCEECCH
T ss_pred             CCCCCCCEEEEEECCCC----eEEEEEEEEECCCCeEEEEEEeC--CCeEEEehHHhhcCcH
Confidence            56789999988553332    699999999987 5788999855  5689999999999864

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=94.43  E-value=0.058  Score=36.65  Aligned_cols=27  Identities=19%  Similarity=0.417  Sum_probs=22.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|.+||.|+|..+.++    |||.|++.
T Consensus        21 ~ELs~~~Gd~i~v~~~~~~----gWw~g~~~   47 (65)
T 2lj0_A           21 DELELRDGDIVDVMEKCDD----GWFVGTSR   47 (65)
T ss_dssp             TBCCBCTTCEEEEEEECTT----SEEEEEET
T ss_pred             CCcCCCCCCEEEEeEeCCC----CEEEEEEC
Confidence            4688999999999987664    89999863

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=94.41  E-value=0.07  Score=41.54  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             cCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEec-cCCcceeeecCCCcccCCCC
Q psy985           41 VENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLG-CQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        41 ~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~-~d~~~teIV~~erLR~~n~n   99 (191)
                      -+|+.|||....     -+|++|.|+.+..|=+.|.|.. |..  .+.|+...+|++.+.
T Consensus         3 ~~~~~VEV~~~~-----G~~y~a~V~~v~~d~~~V~f~n~w~~--~~~vp~~~vRlpP~~   55 (128)
T 3h8z_A            3 FQGLPVEVRGSN-----GAFYKGFVKDVHEDSVTIFFENNWQS--ERQIPFGDVRLPPPA   55 (128)
T ss_dssp             TTTCEEEEECTT-----SCEEEEEEEEECSSEEEEEETTCTTC--CEEEEGGGEECCCCC
T ss_pred             ccccEEEEecCC-----CCEEEEEEEEEeCCcEEEEEccccCc--ceEechhhEEcCCCc
Confidence            478999999822     4899999999999999999952 322  589999999997643

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=94.39  E-value=0.048  Score=35.54  Aligned_cols=29  Identities=17%  Similarity=0.323  Sum_probs=23.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMI   68 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~i   68 (191)
                      ....|..||.|.|..+.++    |||.|+...-
T Consensus        18 ~eLs~~~Gd~i~v~~~~~~----~W~~g~~~g~   46 (61)
T 1y0m_A           18 DELTFTKSAIIQNVEKQDG----GWWRGDYGGK   46 (61)
T ss_dssp             TBCCBCTTCEEEEEECCSS----SEEEEEETTE
T ss_pred             CCcCCcCCCEEEEEEecCC----CEEEEEECCe
Confidence            4678999999999998543    8999987433

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=94.27  E-value=0.085  Score=35.14  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=23.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKM   67 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~   67 (191)
                      ....|..||.|+|..+.+    .|||.|+...
T Consensus        22 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~~~   49 (68)
T 1tg0_A           22 DDLNFEKDQEIIVTSVED----AEWYFGEYQD   49 (68)
T ss_dssp             TBCCBCTTCEEEEEEECS----SSEEEEEEEC
T ss_pred             CCCCCCCCCEEEEEEecC----CCeEEEEECC
Confidence            467899999999998754    4899999875

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.22  E-value=0.079  Score=36.59  Aligned_cols=27  Identities=15%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.+    .|||.|+..
T Consensus        25 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~~   51 (81)
T 2ysq_A           25 RELAFKAGDVIKVLDASN----KDWWWGQID   51 (81)
T ss_dssp             SSCCCCTTCEEEEEECCS----SSEEEEECS
T ss_pred             CcCCCCCCCEEEEEEEcC----cCEEEEEEC
Confidence            467899999999998754    589999863

>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3

Probab=94.06  E-value=0.16  Score=37.64  Aligned_cols=51  Identities=12%  Similarity=0.072  Sum_probs=42.1

Q ss_pred             CCeEEEEeecCCCCccceeeEEEEEEec------c-EEEEEEeccCCcceeeecCCCcccCCC
Q psy985           43 NQEVEVFSKATEGESCGWWKVIVKMIKG------D-FHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        43 gdeVEV~sran~~ep~gWW~a~V~~iKG------d-f~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      |..|-|+.+  +   --|..|+|..++-      . -|+|-|.||+..+.|+|+.+||+..+.
T Consensus        18 ~e~vlc~~~--d---g~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~   75 (92)
T 2bud_A           18 DKIYFIRRE--D---GTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNAD   75 (92)
T ss_dssp             TSCEEEECT--T---SCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHH
T ss_pred             CCEEEEEeC--C---CCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhcc
Confidence            667777763  2   2699999999872      3 799999999999999999999998764

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=94.00  E-value=0.14  Score=34.89  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=29.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPP   90 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~   90 (191)
                      ....|..||.|+|..+.+    -+||.|+.   .|.      .|+ .++|-+++..
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~---~g~------~G~~P~~yv~~~~~   64 (78)
T 2yuo_A           22 DELGFRKNDIITIISQKD----EHCWVGEL---NGL------RGWFPAKFVEVLDE   64 (78)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEE---TTE------EEEEEGGGEEEECC
T ss_pred             CCccCCCCCEEEEEEecC----CCEEEEEE---CCC------EEEEehHHEEECCC
Confidence            467899999999998654    48999974   343      122 4456666654

>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3

Probab=93.98  E-value=0.059  Score=41.70  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCC--cceeeecC--CCcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQS--TFTEIVPP--ERMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~--~~teIV~~--erLR~~n   97 (191)
                      -.|.+|+.+|+--+.|   |..-|.|.|..+.|....|.|.|||.  .|.-.+..  ..|.|+.
T Consensus        10 ~~f~~GmKLEa~D~~~---p~~~~vAtV~~v~g~rl~l~~dG~~~~~~~D~W~~~~s~~I~PvG   70 (127)
T 1wjr_A           10 DLITVGSLIELQDSQN---PFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVG   70 (127)
T ss_dssp             HHCCTTCEEEEECSSC---SSCEEEEECCCEETTEEEECBTTCSSCCSSCEEEETTCSSCBCTT
T ss_pred             hhccCCCEeEEecCCC---CCcEEEEEEeeeeCCEEEEEecCCCCCCCCCEeEeCCCCCccccC
Confidence            3689999999986654   68899999999999999999999997  56555543  3455553

>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}

Probab=93.91  E-value=0.56  Score=43.53  Aligned_cols=143  Identities=12%  Similarity=0.126  Sum_probs=82.2

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCCCC-----CCCcCceeEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNTNP-----PIDAKTFHKF  110 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~n~-----pi~~~~f~k~  110 (191)
                      ...+..|+.+-+... +.    .|++|+|..+.+ +-+.|.|..+  -.++.|+...||+..+.=     |.-...+.-.
T Consensus       409 ~~~~~~G~~c~a~~~-d~----~wyRa~I~~v~~~~~~~V~fvDy--Gn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La  481 (570)
T 3bdl_A          409 SYAPRRGEFCIAKFV-DG----EWYRARVEKVESPAKIHVFYIDY--GNREVLPSTRLGTLSPAFSTRVLPAQATEYAFA  481 (570)
T ss_dssp             CCCCCTTCEEEEECT-TS----CEEEEEEEEEEETTEEEEEETTT--CCEEEECGGGEECCCGGGSTTTSCCCCEEEEET
T ss_pred             CcCCCcCCEEEEEEC-CC----CEEEEEEEEEcCCCeEEEEEEeC--CCeEEEEHHHCccCCHHHhcCCCCcceEEEEEC
Confidence            367889999999664 32    599999999998 7889999844  568999999999987531     2222222222


Q ss_pred             eecCChhHHHHHHhhhchHHHHHhhhc----cEEEEcCCCCeeEEEeCchhhH-hhhhhhhhhhh-------hhHHHHHH
Q psy985          111 DIEVPLDVQEFAKMEGAHKDFQKAIAA----AIVRYIPDKGALSVISRDEACQ-KRASMIKDMHF-------RNLNQKVV  178 (191)
Q Consensus       111 ~i~VPedLre~~~~~~~h~dF~kaiga----~~v~y~pe~~~Lvvls~~e~~~-kRA~mL~dmHf-------r~LrqK~~  178 (191)
                      -|..|.+ .+|  .+.+..-|+..+..    +.|.+.-+....|.|......+ =...|+..-|-       +.|..-+.
T Consensus       482 ~v~pp~~-~~w--~~ea~~~f~~lv~~k~l~~~V~~~~~~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~~~~~~~~~~~~  558 (570)
T 3bdl_A          482 FIQVPQD-DDA--RTDAVDSVVRDIQNTQCLLNVEHLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVIT  558 (570)
T ss_dssp             TEECCSS-HHH--HHHHHHHHHHHHTTEEEEEEEEECCSSSCEEEEEETTTCCBHHHHHHHTTSSEECCCCSGGGHHHHH
T ss_pred             CeEcCCC-CCC--cHHHHHHHHHHhCCCEEEEEEEEEeCCcEEEEEEECCCCccHHHHHHHCCCeEcchhhhhhHHHHHH
Confidence            2334542 233  34456677777632    3343333333444443321111 13344444432       33444455


Q ss_pred             Hhhhhhhhhhc
Q psy985          179 LLKRTEDIDFK  189 (191)
Q Consensus       179 l~~r~eea~~~  189 (191)
                      -|...+|.||+
T Consensus       559 ~l~~~q~~Ak~  569 (570)
T 3bdl_A          559 EYLNAQESAKS  569 (570)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHHhc
Confidence            56666777775

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.90  E-value=0.17  Score=34.93  Aligned_cols=26  Identities=35%  Similarity=0.681  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        23 ~eLs~~~Gd~i~vl~~~~----~gWw~g~~   48 (80)
T 2ekh_A           23 SEISFPAGVEVQVLEKQE----SGWWYVRF   48 (80)
T ss_dssp             TSCCBCTTCEEEEEEECT----TSEEEEEE
T ss_pred             CccCcCCCCEEEEEEeCC----CCeEEEEE
Confidence            467899999999998764    48999985

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=93.88  E-value=0.4  Score=37.66  Aligned_cols=104  Identities=10%  Similarity=0.074  Sum_probs=71.3

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEecc-EEEEEEeccCCcceeeecCCCcccCCCC---CCCCcCceeEEeec
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNTN---PPIDAKTFHKFDIE  113 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd-f~vVey~~~d~~~teIV~~erLR~~n~n---~pi~~~~f~k~~i~  113 (191)
                      ..+.+|+-+-+....++    .|++|+|..+.++ .+.|.|.++-+  +++|  .+||+..+.   -|.=+....-.-|.
T Consensus        46 ~~~~~G~~c~A~~~~d~----~wyRa~I~~~~~~~~~~V~fvDyGn--~~~v--~~lr~l~~~f~~lP~qA~~c~L~~v~  117 (169)
T 3ntk_A           46 SDLKEGALCVAQFPEDE----VFYRAQIRKVLDDGKCEVHFIDFGN--NAVT--QQFRQLPEELAKPARYSRHCELDAST  117 (169)
T ss_dssp             CCCCTTCEEEEEETTTT----EEEEEEEEEECSTTCEEEEETTTTE--EEEE--SCEECCCHHHHSSCCSSEEEEECGGG
T ss_pred             CCCCCCCEEEEEECCCC----cEEEEEEEEECCCCEEEEEEEecCC--eEEh--hhhhccCHHHhhCCceeEEEEECCcC
Confidence            47899999998653332    6999999999875 68899986654  4555  799998754   34444344444467


Q ss_pred             CChhHHHHHHhhhchHHHHHhhh----ccEEEEcCCCCee-EEEeCc
Q psy985          114 VPLDVQEFAKMEGAHKDFQKAIA----AAIVRYIPDKGAL-SVISRD  155 (191)
Q Consensus       114 VPedLre~~~~~~~h~dF~kaig----a~~v~y~pe~~~L-vvls~~  155 (191)
                      .|.+      ..++-..|++.+-    .+.|.|..+.... |.|-..
T Consensus       118 ~~~~------~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~~V~L~~~  158 (169)
T 3ntk_A          118 ISKC------DAALLQSFIDTRFSETFQVEILATKGTGTHVVRLFYQ  158 (169)
T ss_dssp             SCHH------HHHHHHHHHHTTTTSEEEEEEEEECTTSCEEEEEEET
T ss_pred             CCCC------hHHHHHHHHHHhCCCeEEEEEEEecCCCCEEEEEEEC
Confidence            7877      5566677888774    3567787666666 656543

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.82  E-value=0.096  Score=36.84  Aligned_cols=46  Identities=22%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcc
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMR   94 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR   94 (191)
                      ....|..||.|.|..+.+    -|||.|.+   .|..      |+ -++|-+++..+..+
T Consensus        33 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~---~g~~------G~fP~~yv~~~~~~~~~   79 (88)
T 2dbk_A           33 TALALEVGDIVKVTRMNI----NGQWEGEV---NGRK------GLFPFTHVKIFDPQNPD   79 (88)
T ss_dssp             SBCCBCTTCEEEEEEECT----TSCEEEEC---SSCE------EEECTTTEEECCSSCCT
T ss_pred             CcccCCCCCEEEEEEecC----CCEEEEEe---CCCE------EEEehHHeEECCCCCcc
Confidence            457899999999998853    58999965   3431      22 56677777655433

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=93.80  E-value=0.078  Score=34.07  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        16 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   41 (58)
T 1uti_A           16 DELGFRSGEVVEVLDSSN----PSWWTGRL   41 (58)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEE
T ss_pred             CCCCCCCCCEEEEEEECC----CCEEEEEE
Confidence            467899999999998743    58999986

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.77  E-value=0.059  Score=36.90  Aligned_cols=28  Identities=18%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .....|..||.|+|+.+.++   -|||.|++
T Consensus        28 ~~eLsf~~Gd~i~v~~~~~~---~gWw~g~~   55 (76)
T 2csi_A           28 EAELTFCTGDIITVFGEIDE---DGFYYGEL   55 (76)
T ss_dssp             TTSCCCCTTCEEEEESSCCS---SSEEEEEE
T ss_pred             CCcccCCCCCEEEEeEecCC---CCeEEEEE
Confidence            45788999999999997653   48999986

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=93.61  E-value=0.17  Score=34.61  Aligned_cols=27  Identities=22%  Similarity=0.532  Sum_probs=22.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+    .|||.|+..
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~gWw~g~~~   48 (80)
T 1ue9_A           22 EQLSLAPGQLILILKKNT----SGWWQGELQ   48 (80)
T ss_dssp             TBCCCCTTCEEEEEEECS----SSEEEEEEC
T ss_pred             CCCCCCCCCEEEEEEecC----CCcEEEEEC
Confidence            467899999999999854    589999876

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=93.57  E-value=0.057  Score=38.36  Aligned_cols=54  Identities=17%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcccCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR~~n   97 (191)
                      ....|..||.|.|+.+.++..-.|||.|++.   |.     -.|+ .++|-+++....-+..+
T Consensus        32 ~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~---~~-----~~G~~P~~yv~~~~~~~~~~~~   86 (93)
T 1wxu_A           32 EEISFRAGDMLNLALKEQQPKVRGWLLASLD---GQ-----TTGLIPANYVKILGKRRGRKTI   86 (93)
T ss_dssp             SBCCBCSSCBCEECCTTTSCSCSSCEEEESS---SS-----SCEEECSTTEEECCCBCCSTTT
T ss_pred             CccCcCCCCEEEEEECCCCCCCCCcEEEEeC---Cc-----CEEEEehHHEEEcCCccccCCC
Confidence            4678999999999998765444799999743   32     0122 56677777666555444

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.54  E-value=0.091  Score=35.07  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   47 (68)
T 2dmo_A           22 EELQVMPGNIVFVLKKGN----DNWATVMF   47 (68)
T ss_dssp             SSCCCCTTCEEEECEECS----SSCEEEEE
T ss_pred             CCCCCCCCCEEEEEEeCC----CCEEEEEe
Confidence            468899999999998755    48999964

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=93.52  E-value=0.079  Score=35.29  Aligned_cols=27  Identities=19%  Similarity=0.166  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+    .|||.|+..
T Consensus        18 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~~   44 (67)
T 2bzy_A           18 TALALEVGDIVKVTRMNI----NGQWEGEVN   44 (67)
T ss_dssp             TBCCBCTTCEEEEEEECS----SSEEEEEET
T ss_pred             CccccCCCCEEEEEEecC----CCeEEEEeC
Confidence            467899999999998853    489999653

>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*

Probab=93.47  E-value=0.14  Score=45.16  Aligned_cols=52  Identities=10%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPER   92 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~er   92 (191)
                      ..|.+|+.+|+--+   .+|.....|+|..++|+.+-|.|-||+..|..+|..+.
T Consensus       251 ~~F~~gmKLEavD~---~~p~~ic~AtV~~v~~~~l~v~fDgw~~~~d~w~~~dS  302 (331)
T 1oz2_A          251 HSFLVNMKLEAVDR---RNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADH  302 (331)
T ss_dssp             CCCCTTCEEEEECS---SSTTCEEEEEEEEECSSEEEEEETTBCGGGCEEEETTC
T ss_pred             cccccCceeEeecc---cCCCcEEeeEEEEEcCCEEEEEeCCCCCcCCEEEECCC
Confidence            46899999999866   45677889999999999999999999999988886553

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.44  E-value=0.16  Score=34.70  Aligned_cols=49  Identities=18%  Similarity=0.353  Sum_probs=34.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcccCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR~~n   97 (191)
                      ....|..||.|+|+.+.+    .|||.|+.   .|.-      |+ .++|-+++....-++..
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~---~g~~------G~~P~~yv~~~~~~~~~~~~   71 (79)
T 2yun_A           22 DELNLEKGDIVIIHEKKE----EGWWFGSL---NGKK------GHFPAAYVEELPSNAGNTAT   71 (79)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSCEEEES---SSCE------EEECSTTEEEESSCSSCCCC
T ss_pred             CCcCCCCCCEEEEEEcCC----CCEEEEEE---CCCE------EEEEhHHeEECCCCCCCCCC
Confidence            467899999999998654    48999984   4431      22 55677777766555544

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.37  E-value=0.22  Score=34.92  Aligned_cols=27  Identities=19%  Similarity=0.406  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|+.+.+    .|||.|+..
T Consensus        32 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~~   58 (88)
T 1x2q_A           32 NELTFKHGEIIIVLDDSD----ANWWKGENH   58 (88)
T ss_dssp             SCCCCCSSCEEEEEECSC----SSSEEEEET
T ss_pred             CccCCCCCCEEEEEEeCC----CCEEEEEEC
Confidence            467899999999998643    489999864

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=93.36  E-value=0.083  Score=34.02  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=22.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.+    .|||.|+..
T Consensus        15 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~~   41 (58)
T 1jo8_A           15 NELTFVENDKIINIEFVD----DDWWLGELE   41 (58)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEET
T ss_pred             CCcccCCCCEEEEEEecC----CCcEEEEEC
Confidence            467899999999999754    489999875

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=93.28  E-value=0.087  Score=37.07  Aligned_cols=57  Identities=18%  Similarity=0.388  Sum_probs=38.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcccCCCCCCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMRQKNTNPPI  102 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR~~n~n~pi  102 (191)
                      ....|..||.|+|+.+.+  .-.|||.|+.  ..|..      |+ -.+|-+++....-++..+..|.
T Consensus        32 ~eLs~~~Gd~i~v~~~~~--~~~~Ww~g~~--~~g~~------G~~P~~yv~~~~~~~~~~~~~~~~s   89 (91)
T 1wx6_A           32 EELNFEKGETMEVIEKPE--NDPEWWKCKN--ARGQV------GLVPKNYVVVLSDGPALHPAHSGPS   89 (91)
T ss_dssp             SBCCCCTTCEEEEEECCS--SCTTEEEEEC--TTCCE------EEEEGGGEEEEEESSSCSCCCSCSC
T ss_pred             CcccCCCCCEEEEEECCC--CCCCcEEEEe--CCCCE------EEEchHHEEECCCcCCCCCCCCCCC
Confidence            467899999999999742  2458999972  23432      22 4567888887777766655443

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=93.27  E-value=0.11  Score=33.75  Aligned_cols=26  Identities=15%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        19 ~eLs~~~Gd~i~v~~~~~----~~W~~g~~   44 (60)
T 1w70_A           19 LELNFKAGDVIFLLSRIN----KDWLEGTV   44 (60)
T ss_dssp             TBCCBCTTCEEEEEEECS----SSEEEEEE
T ss_pred             CCccCCCCCEEEEEEeCC----CCeEEEEE
Confidence            467899999999999864    58999985

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=93.23  E-value=0.2  Score=32.63  Aligned_cols=27  Identities=22%  Similarity=0.494  Sum_probs=23.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.+    .|||.|+..
T Consensus        16 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~~   42 (65)
T 2oaw_A           16 REVTMKKGDILTLLNSTN----KDWWKVEVK   42 (65)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEcCC----CCEEEEEEc
Confidence            467899999999999754    589999887

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=93.16  E-value=0.13  Score=36.28  Aligned_cols=25  Identities=16%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|.
T Consensus        32 ~eLsf~~Gd~i~Vl~~~~----~gWw~g~   56 (83)
T 1neg_A           32 REVTMKKGDILTLLNSTN----KDWWKVE   56 (83)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEE
T ss_pred             CccccCCCCEEEEEEecC----CCEEEEE
Confidence            467899999999999754    3899994

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.14  E-value=0.14  Score=36.75  Aligned_cols=47  Identities=13%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcc
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMR   94 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR   94 (191)
                      ....|..||.|+|+.+.++   -|||.|++   .|..      |+ -++|-+.+..+.-.
T Consensus        40 ~eLsf~~Gd~i~vl~~~~~---~gWw~g~~---~g~~------G~~P~~yv~~~~~~~~~   87 (97)
T 2csq_A           40 EELPFKEGQIIKVYGDKDA---DGFYRGET---CARL------GLIPCNMVSEIQADDEE   87 (97)
T ss_dssp             TBCCBCTTCEEEEEEEECT---TCEEEEEE---TTEE------EEEETTTSEECCCCSCC
T ss_pred             CccCCCCCCEEEEEEecCC---CCeEEEEE---CCcE------EEEehHHeEECCCCchh
Confidence            4678999999999987653   57999987   3431      22 44566666544333

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=93.13  E-value=0.061  Score=36.16  Aligned_cols=25  Identities=16%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ...|.+||.|+|..+.++    |||.|+.
T Consensus        20 ~Ls~~~Gd~i~v~~~~~~----~Ww~g~~   44 (60)
T 2lx7_A           20 GLRFAAGELITLLQVPDG----GWWEGEK   44 (60)
T ss_dssp             CCCCCTTCEEEBSCCCTT----SCEEEEC
T ss_pred             CccCCCCCEEEEeEecCC----CeEEEEe
Confidence            478999999999876654    8999975

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=93.01  E-value=0.074  Score=34.74  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        20 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   45 (62)
T 1k4u_S           20 EDLEFQEGDIILVLSKVN----EEWLEGES   45 (62)
T ss_dssp             SBCCBCSSCEEEEEEESS----SSCEEEEC
T ss_pred             CCccCCCCCEEEEEEeCC----CCEEEEEE
Confidence            467899999999999854    38999983

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=92.98  E-value=0.15  Score=33.94  Aligned_cols=29  Identities=10%  Similarity=0.124  Sum_probs=23.4

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      .+....|..||.|+|..+.+    .|||.|+..
T Consensus        16 ~~~eLs~~~Gd~i~v~~~~~----~~W~~g~~~   44 (69)
T 1ruw_A           16 SSSELPLKKGDIVFISRDEP----SGWSLAKLL   44 (69)
T ss_dssp             CTTBCCBCTTCEEEEEEECT----TSEEEEEET
T ss_pred             CCCcccCCCCCEEEEEEecC----CCeEEEEEC
Confidence            34578899999999998764    489999765

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=92.93  E-value=0.11  Score=35.01  Aligned_cols=26  Identities=19%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++    |||.|+.
T Consensus        18 ~eLsf~~Gd~i~v~~~~~~----~Ww~g~~   43 (68)
T 2ew3_A           18 GELGFKEGDIITLTNQIDE----NWYEGMI   43 (68)
T ss_dssp             TBCCBCTTCEEEEEEESSS----SEEEEEE
T ss_pred             CccCCCCCCEEEEEEecCC----CEEEEEE
Confidence            4678999999999997643    8999986

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=92.81  E-value=0.088  Score=34.21  Aligned_cols=26  Identities=19%  Similarity=0.534  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.++    |||.|+.
T Consensus        21 ~eLs~~~Gd~i~v~~~~~~----~Ww~g~~   46 (60)
T 2gnc_A           21 RELSFKKGASLLLYHRASE----DWWEGRH   46 (60)
T ss_dssp             TBCCBCTTCEEEEEEEEET----TEEEEEE
T ss_pred             CCcCCCCCCEEEEEEecCC----CEEEEEE
Confidence            4678999999999998653    8999987

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=92.80  E-value=0.12  Score=33.81  Aligned_cols=27  Identities=15%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+    .|||.|+..
T Consensus        20 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~~   46 (62)
T 1uj0_A           20 NELTFKHGELITVLDDSD----ANWWQGENH   46 (62)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEET
T ss_pred             CCcCCCCCCEEEEEEeCC----CCEEEEEEC
Confidence            467899999999998643    589999864

>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A

Probab=92.74  E-value=0.29  Score=43.16  Aligned_cols=52  Identities=15%  Similarity=0.170  Sum_probs=44.4

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPER   92 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~er   92 (191)
                      ..|.+|+.+|+--+-|   |.--+.|+|..++|....|.|-||+.+|..++..+.
T Consensus       246 ~~F~~gmkLEAvD~~~---p~licvATV~~v~g~~l~v~fDgw~~~~d~w~~~~S  297 (324)
T 3ut1_A          246 HGFQKKMKLEVVDKRN---PMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADS  297 (324)
T ss_dssp             CCCCTTCEEEEECSSS---TTCEEEEEEEEECSSEEEEEETTSCGGGCEEEETTC
T ss_pred             ccCCCCCeeeccCCCC---CCceeEEEEEEecCCEEEEEeCCCCCCCCEEEeCCC
Confidence            4689999999987655   556669999999999999999999999988887654

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=92.73  E-value=0.12  Score=33.74  Aligned_cols=26  Identities=15%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        24 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   49 (65)
T 3ulr_B           24 DEISFDPDDIITNIEMID----DGWWRGVC   49 (65)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEE
T ss_pred             CEeeEecCCEEEEEEecC----CCEEEEEE
Confidence            467899999999998764    38999984

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=92.65  E-value=0.14  Score=33.85  Aligned_cols=28  Identities=11%  Similarity=0.438  Sum_probs=22.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKM   67 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~   67 (191)
                      ....|..||.|+|..+.++    |||.|+...
T Consensus        21 ~eLs~~~Gd~i~v~~~~~~----~Ww~g~~~~   48 (67)
T 2o9s_A           21 VEMSFRKGERITLLRQVDE----NWYEGRIPG   48 (67)
T ss_dssp             TBCCBCTTCEEEEEEECSS----SEEEEECTT
T ss_pred             CccCCCCCCEEEEEEecCC----CEEEEEECC
Confidence            4678999999999987543    899998764

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.65  E-value=0.15  Score=34.35  Aligned_cols=26  Identities=15%  Similarity=0.528  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++    |||.|+.
T Consensus        24 ~eLs~~~Gd~i~v~~~~~~----~Ww~g~~   49 (72)
T 2dl8_A           24 RELSFKKGASLLLYQRASD----DWWEGRH   49 (72)
T ss_dssp             SBCCBCTTCEEEEEEEEET----TEEEEEE
T ss_pred             CEeccCCCCEEEEEeecCC----CEEEEEE
Confidence            4678999999999998643    8999987

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=92.64  E-value=0.12  Score=35.39  Aligned_cols=29  Identities=24%  Similarity=0.597  Sum_probs=23.8

Q ss_pred             CCCccCCCeEEEEeecCC-CCccceeeEEE
Q psy985           37 NSGFVENQEVEVFSKATE-GESCGWWKVIV   65 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~-~ep~gWW~a~V   65 (191)
                      ...|..||.|+|..+.++ ....|||.|+.
T Consensus        24 ELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~   53 (69)
T 1nm7_A           24 EVALKKGDLMAILSKKDPLGRDSDWWKVRT   53 (69)
T ss_dssp             CCCCCTTCEEEECCSSSSSCCSSSCEEEEE
T ss_pred             ccCCCCCCEEEEEecCCCCCCCCCeeEEEe
Confidence            678999999999998763 33569999986

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=92.59  E-value=0.16  Score=32.40  Aligned_cols=25  Identities=16%  Similarity=0.395  Sum_probs=21.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|+
T Consensus        16 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~   40 (57)
T 1cka_A           16 EDLPFKKGDILRIRDKPE----EQWWNAE   40 (57)
T ss_dssp             TBCCBCTTCEEEEEECSS----SSEEEEE
T ss_pred             CCCCCCCCCEEEEEEecC----CCcEEEE
Confidence            467899999999999754    5899997

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=92.51  E-value=0.035  Score=39.54  Aligned_cols=49  Identities=22%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CCCCccCCCeEEEEeecC---------CCCcc--ceeeEEEE--EEeccEEEEEEeccCCcceeeecCCC
Q psy985           36 INSGFVENQEVEVFSKAT---------EGESC--GWWKVIVK--MIKGDFHVVEYLGCQSTFTEIVPPER   92 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran---------~~ep~--gWW~a~V~--~iKGdf~vVey~~~d~~~teIV~~er   92 (191)
                      ....|.+||.|+|..+..         +....  |||.|+..  .-.|-|        .++|.++++...
T Consensus        26 ~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~f--------P~nyVe~i~~~~   87 (90)
T 3o5z_A           26 EDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF--------PGTYVEFLGPVA   87 (90)
T ss_dssp             TBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEE--------EGGGEEEEEEEC
T ss_pred             CccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEe--------ehHHEEEecccc
Confidence            468899999999986521         33344  89999852  222322        456777776543

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=92.48  E-value=0.18  Score=32.92  Aligned_cols=26  Identities=19%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .+||.|++
T Consensus        36 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~   61 (62)
T 1g2b_A           36 REVTMKKGDILTLLNSTN----KDWWKVEV   61 (62)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEE
T ss_pred             CccCCCCCCEEEEEEecC----CCEEEEEe
Confidence            456789999999999754    58999975

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=92.46  E-value=0.11  Score=34.62  Aligned_cols=27  Identities=15%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.+    .|||.|+..
T Consensus        23 ~eLs~~~Gd~i~v~~~~~----~gWw~g~~~   49 (67)
T 2eyx_A           23 TALALEVGELVKVTKINV----SGQWEGECN   49 (67)
T ss_dssp             SBCCBCSSEEEEEEEECT----TSEEEEEET
T ss_pred             CccccCCCCEEEEEEecC----CCEEEEEEC
Confidence            467899999999998753    589999653

>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*

Probab=92.44  E-value=0.35  Score=37.88  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=43.7

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec------------------------------------------cEEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG------------------------------------------DFHV   74 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG------------------------------------------df~v   74 (191)
                      ...|.+|..|-.|..     |. =+.|||..|+.                                          -.|.
T Consensus         5 ~p~f~~gE~VlcfHg-----~~-~YeAKIl~i~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~   78 (130)
T 3e9g_A            5 EQEFALGGRCLAFHG-----PL-MYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFF   78 (130)
T ss_dssp             --CCCTTCEEEEEET-----TE-EEEEEEEEEEETTTTEEEECC--------------CCBCCCTTCCCCTTTTTSCEEE
T ss_pred             cccccCCCEEEEEeC-----Cc-ceeeEEEEeeCCCcceeecccccccccccccccccccccccccccCchhhccCceEE
Confidence            357889999999884     22 37888887731                                          1599


Q ss_pred             EEEeccCCcceeeecCCCcccCC
Q psy985           75 VEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        75 Vey~~~d~~~teIV~~erLR~~n   97 (191)
                      |-|.||..++.|.|+.+||+..|
T Consensus        79 VHY~GWn~~WDEWV~e~rvlk~~  101 (130)
T 3e9g_A           79 IHYQGWKSSWDEWVGYDRIRAYN  101 (130)
T ss_dssp             EEETTSCGGGCEEEETTTEECSS
T ss_pred             EEeCCCCCChhhccCHhhhhccC
Confidence            99999999999999999999876

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=92.44  E-value=0.18  Score=32.91  Aligned_cols=27  Identities=11%  Similarity=0.104  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+..   ..|||.|+.
T Consensus        16 ~eLs~~~Gd~i~v~~~~~---~~~Ww~g~~   42 (62)
T 2j6f_A           16 DELTIRVGEIIRNVKKLQ---EEGWLEGEL   42 (62)
T ss_dssp             TBCCBCTTCEEEEEEECS---STTEEEEEE
T ss_pred             CCcCCcCCCEEEEEEecC---CCCEEEEEE
Confidence            467899999999999832   358999985

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=92.41  E-value=0.14  Score=32.98  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        17 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   42 (58)
T 1zx6_A           17 GDLGLKPGDKVQLLEKLS----PEWYKGSC   42 (58)
T ss_dssp             TBCCBCTTCEEEEEEECS----SSEEEEEE
T ss_pred             CCccCCCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999998754    58999986

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=92.36  E-value=0.13  Score=33.06  Aligned_cols=26  Identities=15%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        16 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   41 (58)
T 2bz8_A           16 DELTISVGEIITNIRKED----GGWWEGQI   41 (58)
T ss_dssp             TBCCBCTTCEEEEEECCT----TTEEEEEE
T ss_pred             CEeeECCCCEEEEEEeCC----CCEEEEEE
Confidence            467899999999999753    58999986

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=92.21  E-value=0.21  Score=31.94  Aligned_cols=27  Identities=15%  Similarity=0.326  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++   .|||.|+.
T Consensus        16 ~eLs~~~Gd~i~v~~~~~~---~~W~~g~~   42 (58)
T 1zuu_A           16 DEITITPGDKISLVARDTG---SGWTKINN   42 (58)
T ss_dssp             TBCCBCTTCCEEEEECCSS---SSEEEEEE
T ss_pred             CcccCCCCCEEEEeEcCCC---CCCEEEEE
Confidence            4678999999999987652   58999986

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=92.18  E-value=0.17  Score=31.99  Aligned_cols=27  Identities=11%  Similarity=0.094  Sum_probs=22.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+   ..|||.|+.
T Consensus        15 ~eLs~~~Gd~i~v~~~~~---~~~W~~g~~   41 (54)
T 2a28_A           15 DEISIDPGDIITVIRGDD---GSGWTYGEC   41 (54)
T ss_dssp             TBCCBCTTCEEEEEECCC---SSSEEEEEE
T ss_pred             CCccCCCCCEEEEEEecC---CCCEEEEEE
Confidence            467899999999999764   268999987

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=92.08  E-value=0.19  Score=33.42  Aligned_cols=25  Identities=16%  Similarity=0.395  Sum_probs=21.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|+
T Consensus        18 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~   42 (65)
T 1b07_A           18 EDLPFKKGDILRIRDKPE----EQWWNAE   42 (65)
T ss_dssp             TBCCBCTTCEEEEEECSS----SSEEEEE
T ss_pred             CccCCcCCCEEEEEEecC----CCeEEEE
Confidence            467899999999999754    5899997

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=92.08  E-value=0.22  Score=32.79  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.++    |||.|+.
T Consensus        21 ~eLs~~~Gd~i~v~~~~~~----gW~~g~~   46 (65)
T 2j05_A           21 DEISFLKGDMFIVHNELED----GWMWVTN   46 (65)
T ss_dssp             SBCCBCTTCEEEEEEECTT----SEEEEEE
T ss_pred             CcCcCCCCCEEEEeEecCC----CEEEEEE
Confidence            4678999999999987543    8999973

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=92.06  E-value=0.12  Score=35.42  Aligned_cols=29  Identities=14%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.++..-.|||.|+
T Consensus        28 ~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~   56 (79)
T 1uhc_A           28 NELSVSANQKLKILEFKDVTGNTEWWLAE   56 (79)
T ss_dssp             SBCCBCTTCEEEEEESCCTTSCTTEEEEE
T ss_pred             CccCCCCCCEEEEEECCCCCCCCCeEEEE
Confidence            46789999999999987754457999996

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=91.98  E-value=0.13  Score=34.26  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.++    |||.|+..
T Consensus        22 ~eLs~~~Gd~i~v~~~~~~----~Ww~g~~~   48 (69)
T 2eqi_A           22 DELTFCRGALIHNVSKEPG----GWWKGDYG   48 (69)
T ss_dssp             SCCCBCTTCEEESCCCCSS----SCEEEEET
T ss_pred             CccCCCCCCEEEEEEcCCC----CeEEEEEC
Confidence            4678999999999987543    99999865

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=91.95  E-value=0.18  Score=32.51  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        19 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   44 (59)
T 2g6f_X           19 DELSFSKGDVIHVTRVEE----GGWWEGTH   44 (59)
T ss_dssp             TBCCBCTTCEEEEEEECT----TSEEEEEE
T ss_pred             CCcCCCCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999998754    58999985

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=91.95  E-value=0.17  Score=32.25  Aligned_cols=28  Identities=7%  Similarity=0.105  Sum_probs=23.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      +....|..||.|+|..+.+    .|||.|+..
T Consensus        15 ~~eLs~~~Gd~i~v~~~~~----~gW~~g~~~   42 (58)
T 1zuy_A           15 PSELPLKKGDVIYITREEP----SGWSLGKLL   42 (58)
T ss_dssp             TTBCCBCTTCEEEEEEECT----TSEEEEEES
T ss_pred             CCcCCCCCCCEEEEEEecC----CCeEEEEEC
Confidence            3468899999999999863    589999875

>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}

Probab=91.94  E-value=0.33  Score=44.43  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=41.0

Q ss_pred             CcccccCCCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccC
Q psy985           25 FSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQ   81 (191)
Q Consensus        25 f~~VRlPP~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d   81 (191)
                      |.+|.+++   ..-.|.+|+.|||-.+.++..+-..|.|.|.++-|-.....|.|.+
T Consensus        31 F~h~~~~~---~~~~~~~GmklEv~~~~~~~~~~~yWvA~V~~~~G~rllLry~G~~   84 (437)
T 3feo_A           31 FKHAPMGT---CWGDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFE   84 (437)
T ss_dssp             CTTSTTTT---SCTTCCTTCEEEEECSCC----CCEEEEEEEEEETTEEEEEETTCT
T ss_pred             hcCCCccc---cccccCCCCEEEEecCCCCCCcCceEEEEEeeecceEEEEEecccC
Confidence            44555554   3357899999999987665444689999999999999999999984

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=91.89  E-value=0.25  Score=35.37  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcccC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMRQK   96 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR~~   96 (191)
                      ....|..||.|+|+....   .-|||.|++.  .|.      .|+ -++|-+.+.....|..
T Consensus        38 ~eLsf~~Gd~i~v~~~~~---~~gWw~g~~~--~g~------~G~~Psnyv~~~~~~~~~~~   88 (96)
T 1wie_A           38 AELPLTAGKYLYVYGDMD---EDGFYEGELL--DGQ------RGLVPSNFVDFVQDNESRLA   88 (96)
T ss_dssp             TBCCCCTTCEEEEESSCC---SSSCCEEEET--TCC------BCBCCTTSEECCCSCCCCSC
T ss_pred             CeeeECCCCEEEEeEecC---CCCEEEEEEC--CCC------EEEEchHHEEEcCCCCcccc
Confidence            467899999999994322   2589999852  232      233 4567776665544443

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=91.81  E-value=0.2  Score=32.30  Aligned_cols=28  Identities=18%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+  ...|||.|+.
T Consensus        18 ~eLs~~~Gd~i~v~~~~~--~~~~Ww~g~~   45 (60)
T 1oot_A           18 GDLPFRKGDVITILKKSD--SQNDWWTGRV   45 (60)
T ss_dssp             TBCCBCTTCEEEEEECCS--CTTSEEEEEE
T ss_pred             CEeeEcCCCEEEEEEeCC--CCCCeEEEEE
Confidence            467899999999999763  2458999986

>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}

Probab=91.80  E-value=0.19  Score=38.50  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=43.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEE---------ec--cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMI---------KG--DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~i---------KG--df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ....+..||-|-+-.+     -..||||+|...         +|  ..|.|.|.|...+| -.|...+|.|-..+
T Consensus        19 ~~~~~~~GdlVwaK~~-----g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~-aWv~~~~l~pf~~~   87 (134)
T 2gfu_A           19 TSSDFSPGDLVWAKME-----GYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTR-GWVSKRLLKPYTGS   87 (134)
T ss_dssp             SSCCCCTTSEEEECCT-----TSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEE-EEECGGGEEESCCT
T ss_pred             cCCCCCCCCEEEEeec-----CCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCce-EEECHHHcccCcch
Confidence            3478999999988765     347999999764         34  47999998764344 57888899887755

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=91.79  E-value=0.13  Score=34.06  Aligned_cols=26  Identities=8%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~W~~g~~   47 (68)
T 2dl3_A           22 KELPLQKGDIVYIYKQID----QNWYEGEH   47 (68)
T ss_dssp             TBCCBCTTCEEEEEECCS----TTEEEEEC
T ss_pred             CCccCCCCCEEEEeEecC----CCEEEEEE
Confidence            467899999999998644    38999983

>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2

Probab=91.78  E-value=0.2  Score=37.05  Aligned_cols=57  Identities=16%  Similarity=0.097  Sum_probs=43.1

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEE------------eccEEEEEEeccCCcceeeecCCCcccCCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMI------------KGDFHVVEYLGCQSTFTEIVPPERMRQKNTNP  100 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~i------------KGdf~vVey~~~d~~~teIV~~erLR~~n~n~  100 (191)
                      -+.+..||-|-+-.+.     +.||||+|...            +..-|.|.|.|. .+| -.|...+|.|-..+.
T Consensus         6 g~~~~~GdlVwaK~~g-----~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~-~~~-awv~~~~l~p~~~~~   74 (110)
T 2daq_A            6 SGKLHYKQIVWVKLGN-----YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGS-HDY-YWVHQGRVFPYVEGD   74 (110)
T ss_dssp             CCSCCSSEEEEEECSS-----SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTT-TEE-EEECSSSSEECCSSC
T ss_pred             CCCCCCCCEEEEEeCC-----CCCCceeeCChhhCCHHHhhccCCCCcEEEEEecC-CCE-EEEcHHHCcCcchhh
Confidence            4678899999998764     57999999765            223588999884 333 678999999877553

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=91.78  E-value=0.18  Score=34.34  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.++    |||.|+..
T Consensus        20 ~eLs~~~Gd~i~v~~~~~~----gWw~g~~~   46 (73)
T 2lcs_A           20 NELRLAEGDIVFISYKHGQ----GWLVAENE   46 (73)
T ss_dssp             TBCCBCTTCEEEEEEEETT----TEEEEECT
T ss_pred             CccCCcCCCEEEEEEEcCC----CEEEEEEC
Confidence            4678999999999987544    89999753

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=91.76  E-value=0.18  Score=34.31  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=22.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|+|+.+.    ..|||.|++
T Consensus        25 ~~eLs~~~Gd~i~v~~~~----~~gWw~g~~   51 (73)
T 2ebp_A           25 TDSLKLKKGDIIDIISKP----PMGTWMGLL   51 (73)
T ss_dssp             CSBCCBCSSCEEEEEECC----SSSCEEEEC
T ss_pred             CCccCCCCCCEEEEEEeC----CCCeEEEEE
Confidence            356889999999999984    358999965

>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B

Probab=91.76  E-value=0.44  Score=39.10  Aligned_cols=74  Identities=18%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEe-ccEEEEEEeccCCcceeeecCCCcccCCCCC-----CCCcCceeEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIK-GDFHVVEYLGCQSTFTEIVPPERMRQKNTNP-----PIDAKTFHKF  110 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK-Gdf~vVey~~~d~~~teIV~~erLR~~n~n~-----pi~~~~f~k~  110 (191)
                      ...+..|+.+-+... +    -.|++|+|..+. ++-+.|.|...  -.++.|+..+||+..+.-     |.-...+.-.
T Consensus        63 ~~~~~~G~~c~a~~~-d----~~wyRa~V~~~~~~~~~~V~~vDy--Gn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~  135 (246)
T 2hqx_A           63 SYAPRRGEFCIAKFV-D----GEWYRARVEKVESPAKIHVFYIDY--GNREVLPSTRLGTLSPAFSTRVLPAQATEYAFA  135 (246)
T ss_dssp             TCCCCTTCEEEEECT-T----SCEEEEEEEEEEETTEEEEEETTT--CCEEEECGGGEECCCGGGSTTTSCCCC------
T ss_pred             CCCCCCCCEEEEEcC-C----CCEEEEEEEEEcCCCeEEEEEEeC--CCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhh
Confidence            467889999999654 3    269999999987 57888999844  568999999999986431     3333333334


Q ss_pred             eecCChh
Q psy985          111 DIEVPLD  117 (191)
Q Consensus       111 ~i~VPed  117 (191)
                      -|..|++
T Consensus       136 ~v~~p~~  142 (246)
T 2hqx_A          136 FIQVPQD  142 (246)
T ss_dssp             -------
T ss_pred             ceecCCC
Confidence            4555654

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=91.69  E-value=0.19  Score=33.35  Aligned_cols=26  Identities=12%  Similarity=0.323  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        28 ~eLs~~~Gd~i~v~~~~~----~~W~~g~~   53 (72)
T 4glm_A           28 NELDFEVGDKIRILATLE----DGWLEGSL   53 (72)
T ss_dssp             TBCCBCTTCEEEEEEECS----TTEEEEEE
T ss_pred             CcCCCCCCCEEEEEEccC----CCEEEEEE
Confidence            467899999999998764    57999994

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=91.67  E-value=0.15  Score=33.16  Aligned_cols=26  Identities=12%  Similarity=0.366  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~W~~g~~   47 (65)
T 3u23_A           22 DELELKVGDIIDINEEVE----EGWWSGTL   47 (65)
T ss_dssp             TBCCBCTTCEEEEEEEEE----TTEEEEEE
T ss_pred             CCcCCCCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999998753    58999994

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.63  E-value=0.16  Score=34.64  Aligned_cols=26  Identities=15%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+.+    .|||.|+.
T Consensus        25 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   50 (76)
T 2epd_A           25 QELSFRRGDVLRLHERAS----SDWWRGEH   50 (76)
T ss_dssp             TBCEECTTCEEEEEEEEE----TTEEEEEE
T ss_pred             CccCCCCCCEEEEEEeCC----CCEEEEEE
Confidence            467889999999999864    58999986

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.61  E-value=0.33  Score=32.59  Aligned_cols=29  Identities=17%  Similarity=0.387  Sum_probs=22.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+ ....|||.|+.
T Consensus        23 ~eLsf~~Gd~i~v~~~~~-~~~~~Ww~g~~   51 (73)
T 2dl7_A           23 DELSFPEGAIIRILNKEN-QDDDGFWEGEF   51 (73)
T ss_dssp             TBCCBCTTCEEEEEECCC-SSSSSCEEEEE
T ss_pred             CcCCCCCCCEEEEEECCC-CCCCCcEEEEE
Confidence            468899999999999742 12458999983

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=91.60  E-value=0.21  Score=31.74  Aligned_cols=26  Identities=23%  Similarity=0.532  Sum_probs=21.3

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      +....|..||.|.|..+.+    .|||.|.
T Consensus        15 ~~eLs~~~Gd~i~v~~~~~----~~W~~g~   40 (58)
T 4e6r_A           15 EDELSLVXGSRVTVMEXCS----DGWWRGS   40 (58)
T ss_dssp             TTBCCBCTTCEEEEEEECT----TSEEEEE
T ss_pred             CCEeeEeCCCEEEEeEcCC----CCEEEEE
Confidence            3468899999999998763    5899994

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=91.56  E-value=0.26  Score=32.03  Aligned_cols=25  Identities=12%  Similarity=0.094  Sum_probs=20.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|+
T Consensus        18 ~eLs~~~Gd~i~v~~~~~----~~W~~g~   42 (62)
T 2fpe_A           18 DELELEVDDPLLVELQAE----DYWYEAY   42 (62)
T ss_dssp             TBCCBCTTCEEEEEEECT----TSEEEEE
T ss_pred             CcCcCCCCCEEEEEEecC----CCEEEEE
Confidence            467899999999986644    6899997

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=91.50  E-value=0.19  Score=33.57  Aligned_cols=26  Identities=8%  Similarity=0.070  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        16 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   41 (65)
T 2nwm_A           16 KELTLQKGDIVYIHKEVD----KNWLEGEH   41 (65)
T ss_dssp             TBCCBCTTCEEEEEECCT----TTCEEEEE
T ss_pred             CccCCcCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999998743    58999984

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=91.45  E-value=0.27  Score=38.02  Aligned_cols=45  Identities=22%  Similarity=0.445  Sum_probs=30.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPER   92 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~er   92 (191)
                      ....|..||.|+|..+.+   ..|||.|+.   .|.-      |+ .++|-+++..+-
T Consensus        20 ~ELsf~~Gd~i~Vl~~~~---~~gWw~g~~---~g~~------G~fP~~yv~~~~~~~   65 (142)
T 2kbt_A           20 SELSLKEGDIIKILNKKG---QQGWWRGEI---YGRI------GWFPSNYVEEDYSEY   65 (142)
T ss_dssp             SBCCCCTTCEEEEEECCC---SSSEEEEEE---TTEE------EEEETTSEEESSCCC
T ss_pred             CcCCCCCCCEEEEEEecC---CCCeEEEEE---CCee------EEechHHEEEccccc
Confidence            467899999999998752   358999986   3431      22 455666665544

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=91.43  E-value=0.21  Score=31.88  Aligned_cols=26  Identities=15%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        17 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   42 (58)
T 1sem_A           17 GELAFKRGDVITLINKDD----PNWWEGQL   42 (58)
T ss_dssp             TBCCBCTTCEEEEEECSS----SSEEEEEE
T ss_pred             CCcCCCCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999999743    58999987

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=91.40  E-value=0.11  Score=33.42  Aligned_cols=28  Identities=18%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.++   .|||.|+..
T Consensus        18 ~eLs~~~Gd~i~v~~~~~~---~~W~~g~~~   45 (60)
T 2x3w_D           18 DELSFKAGDELTKLGEEDE---QGWCRGRLD   45 (60)
T ss_dssp             SBCCBCTTCEEEECSCCCS---SSEEEEECS
T ss_pred             CcccCCCCCEEEEEEccCC---CCceEEEeC
Confidence            4678999999999986533   489999854

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=91.39  E-value=0.21  Score=34.52  Aligned_cols=26  Identities=12%  Similarity=0.507  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        20 ~eLs~~~Gd~i~vl~~~~----~~Ww~g~~   45 (79)
T 3cqt_A           20 DDLSFHKGEKFQILNSSE----GDWWEARS   45 (79)
T ss_dssp             TBCCBCTTCEEEEEECTT----SSEEEEEE
T ss_pred             CcCCCCCCCEEEEEEecC----CCeEEEEE
Confidence            467899999999998654    58999987

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.39  E-value=0.15  Score=33.95  Aligned_cols=26  Identities=12%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   47 (68)
T 2dl4_A           22 EDLEMRPGDIITLLEDSN----EDWWKGKI   47 (68)
T ss_dssp             TBCCCCTTCEEEEEECCC----SSEEEEEC
T ss_pred             CCcCCCCCCEEEEEEeCC----CCEEEEEE
Confidence            467899999999998644    48999984

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.37  E-value=0.31  Score=32.40  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+   .-|||.|+..
T Consensus        22 ~eLs~~~Gd~i~vl~~~~---~~gW~~~~~~   49 (70)
T 2ct4_A           22 GTISMAEGEDLSLMEEDK---GDGWTRVRRK   49 (70)
T ss_dssp             TCCCBCTTCEEEEEECCS---SSCEEEEECS
T ss_pred             CcCCCCCCCEEEEEeccC---CCCeEEEEeC
Confidence            467899999999998654   3489999854

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.37  E-value=0.2  Score=34.27  Aligned_cols=26  Identities=15%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.++    |||.|+.
T Consensus        32 ~eLs~~~Gd~i~v~~~~~~----~Ww~g~~   57 (79)
T 1x69_A           32 DEISFDPDDIITNIEMIDD----GWWRGVC   57 (79)
T ss_dssp             SBCCCCTTCEEEEEEECSS----SEEEEEE
T ss_pred             CCcCcCCCCEEEEeEecCC----CeEEEEE
Confidence            4678999999999987643    8999984

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=91.30  E-value=0.16  Score=35.64  Aligned_cols=27  Identities=15%  Similarity=0.342  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.++    |||.|++.
T Consensus        34 ~eLsf~~GDiI~V~~~~~~----gWw~G~~~   60 (83)
T 2ke9_A           34 TALNVRAGDVITVLEQHPD----GRWKGHIH   60 (83)
T ss_dssp             TBCCBCTTCEEEESCSSCS----SCEEEEEC
T ss_pred             CcccccCCCEEEEEEecCC----CeEEEEEC
Confidence            4678999999999887553    79999865

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=91.25  E-value=0.34  Score=31.26  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        21 ~eLs~~~Gd~i~v~~~~~----~~W~~g~~   46 (64)
T 4f14_A           21 DEVSFRDGDYIVNVQPID----DGWMYGTV   46 (64)
T ss_dssp             TBCCBCTTCEEEEEEECS----SSEEEEEE
T ss_pred             CcCCCCCCCEEEEEEeCC----CCeEEEEE
Confidence            468899999999998764    48999987

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=91.24  E-value=0.28  Score=31.90  Aligned_cols=25  Identities=20%  Similarity=0.646  Sum_probs=20.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.     .|||.|+-
T Consensus        21 ~eLs~~~Gd~i~v~~~~-----~~Ww~g~~   45 (62)
T 2iim_A           21 GDLGFEKGEQLRILEQS-----GEWWKAQS   45 (62)
T ss_dssp             TBCCBCTTCEEEEEECC-----SSEEEEEE
T ss_pred             CCcCCCCCCEEEEEEcC-----CCEEEEEE
Confidence            46789999999999972     28999974

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=91.20  E-value=0.24  Score=32.00  Aligned_cols=26  Identities=19%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        20 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   45 (60)
T 2xmf_A           20 DELSFNANDIIDIIKEDP----SGWWTGRL   45 (60)
T ss_dssp             TBCCBCTTCEEEEEEECT----TSEEEEEE
T ss_pred             CCcCCCCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999999764    58999987

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.15  E-value=0.31  Score=33.70  Aligned_cols=27  Identities=15%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++   .|||.|+.
T Consensus        32 ~eLsf~~Gd~i~v~~~~~~---~~Ww~g~~   58 (81)
T 1x6g_A           32 GELAFRKGDVVTILEACEN---KSWYRVKH   58 (81)
T ss_dssp             TCCCBCTTCEEEEEECCCS---SSEEEEEE
T ss_pred             CCCCCCCCCEEEEEeccCC---CCeEEEEe
Confidence            4678999999999997554   58999973

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=91.12  E-value=0.45  Score=33.62  Aligned_cols=47  Identities=21%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCc
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERM   93 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erL   93 (191)
                      ....|..||.|+|..+.++  -.|||.|+..   |..      |+ -++|-+++.....
T Consensus        20 ~eLsf~~Gd~i~v~~~~~~--~~gWw~g~~~---g~~------G~~P~~yv~~~~~~~~   67 (93)
T 1uff_A           20 DEMSFNSGDIIQVDEKTVG--EPGWLYGSFQ---GNF------GWFPCNYVEKMPSSEN   67 (93)
T ss_dssp             SCCCBCTTCEEEECSSCCC--SSSEEEEEET---TEE------EEEETTTEEECCSSSS
T ss_pred             CCcCCCCCCEEEEeEccCC--CCCEEEEEEC---CCE------EEechHHeEEcCCccc
Confidence            4688999999999886421  3589999943   431      22 4456666665533

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=91.12  E-value=0.24  Score=31.90  Aligned_cols=27  Identities=15%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|.|..+.+    .|||.|+.
T Consensus        20 ~~eLs~~~Gd~i~v~~~~~----~~Ww~~~~   46 (62)
T 3ngp_A           20 PRELTVKKGDILTLLNSTN----KDWWKIEV   46 (62)
T ss_dssp             TTBCCBCTTCEEEEEECCS----SSEEEEEE
T ss_pred             CCCccCCCCCEEEEeEecC----CCeEEEEE
Confidence            3467899999999999764    57999984

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=91.07  E-value=0.24  Score=31.78  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.    ..|||.|+.
T Consensus        18 ~eLs~~~Gd~i~v~~~~----~~~Ww~g~~   43 (58)
T 1zlm_A           18 DELYFEEGDIIYITDMS----DTNWWKGTS   43 (58)
T ss_dssp             TBCCBCTTCEEEEEECC----SSSEEEEEE
T ss_pred             CCccCCCCCEEEEEEeC----CCCEEEEEE
Confidence            46789999999999873    358999985

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=91.03  E-value=0.29  Score=32.36  Aligned_cols=25  Identities=20%  Similarity=0.460  Sum_probs=21.3

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|.|..+.+    .|||.|+
T Consensus        17 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~   41 (67)
T 1gl5_A           17 HDLRLERGQEYIILEKND----LHWWRAR   41 (67)
T ss_dssp             SBCCBCTTCEEEEEECSS----SSEEEEE
T ss_pred             CeecCCcCCEEEEEEccC----CCcEEEE
Confidence            467899999999999844    5899997

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=90.95  E-value=0.25  Score=32.71  Aligned_cols=26  Identities=8%  Similarity=0.171  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   47 (68)
T 2djq_A           22 GDLKFNKGDVILLRRQLD----ENWYQGEI   47 (68)
T ss_dssp             TCCCCCTTCEEEEEECCC----SSEEEEEE
T ss_pred             CCccCCCCCEEEEEEecC----CCEEEEEE
Confidence            468899999999988643    58999984

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=90.91  E-value=0.19  Score=33.19  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=21.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        25 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   50 (68)
T 1s1n_A           25 GDLTFKKGEILLVIEKKP----DGWWIAKD   50 (68)
T ss_dssp             SCCCBCSSEEEEECSCCS----SSEEEEEC
T ss_pred             CcCCCCCCCEEEEEEcCC----CCeEEEEE
Confidence            467899999999998743    38999983

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.90  E-value=0.25  Score=33.85  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+.+    .|||.|+.
T Consensus        32 ~eLsf~~Gd~i~v~~~~~----~gWw~g~~   57 (78)
T 2ed0_A           32 DELSFQEGAIIYVIKKND----DGWYEGVM   57 (78)
T ss_dssp             TBCCBCSSCEEEEEEECS----SSEEEEEE
T ss_pred             CcccccCCCEEEEEEeCC----CCEEEEEE
Confidence            467899999999999754    48999984

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=90.86  E-value=0.087  Score=35.30  Aligned_cols=26  Identities=12%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.    ..|||.|+.
T Consensus        16 ~eLs~~~Gd~i~v~~~~----~~gWw~g~~   41 (65)
T 2fei_A           16 DELELKVGDIIDINEEV----EEGWWSGTL   41 (65)
T ss_dssp             TBCCCCTTCEEECCCCS----SSSEEEEES
T ss_pred             CccCCCCCCEEEEEEec----CCCEEEEEE
Confidence            46789999999998764    358999974

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=90.85  E-value=0.24  Score=31.65  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        17 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   42 (58)
T 2vwf_A           17 GELGFRRGDFIHVMDNSD----PNWWKGAC   42 (58)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEE
T ss_pred             CCcCCCCCCEEEEEEcCC----CCEEEEEE
Confidence            467899999999998743    58999987

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.84  E-value=0.2  Score=34.16  Aligned_cols=27  Identities=11%  Similarity=0.110  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+..   ..|||.|++
T Consensus        29 ~eLsf~~Gd~i~v~~~~~---~~gWw~g~~   55 (75)
T 2ege_A           29 GRLALRAGDVVMVYGPMD---DQGFYYGEL   55 (75)
T ss_dssp             CBCCBCTTCEEEEESCCC---TTCEEEEES
T ss_pred             CcceECCCCEEEEeEccC---CCCEEEEEE
Confidence            467899999999997533   458999986

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=90.80  E-value=0.27  Score=32.04  Aligned_cols=28  Identities=32%  Similarity=0.596  Sum_probs=22.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+  ...|||.|+.
T Consensus        21 ~eLs~~~Gd~i~v~~~~~--~~~~W~~g~~   48 (64)
T 2jte_A           21 DELTFREGEIIHLISKET--GEAGWWKGEL   48 (64)
T ss_dssp             SBCCBCTTCEEEEEESCS--SSTTEEEEEE
T ss_pred             CccCCCCCCEEEEEECCC--CCCCEEEEEE
Confidence            467899999999998753  2358999985

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=90.73  E-value=0.26  Score=31.46  Aligned_cols=26  Identities=27%  Similarity=0.561  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.    ..|||.|+.
T Consensus        18 ~eLs~~~Gd~i~v~~~~----~~~W~~g~~   43 (58)
T 2drm_A           18 DELTFKEGDTIIVHQKD----PAGWWEGEL   43 (58)
T ss_dssp             TBCCBCTTCEEEEEECC----TTSEEEEEE
T ss_pred             CCcCCCCCCEEEEEEec----CCCEEEEEE
Confidence            46789999999999874    358999986

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=90.72  E-value=0.26  Score=33.29  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+ +    -|||.|+.
T Consensus        25 ~eLs~~~Gd~i~v~~~-~----~~Ww~g~~   49 (74)
T 1j3t_A           25 NHLNFSKHDIITVLEQ-Q----ENWWFGEV   49 (74)
T ss_dssp             TBCCBCTTCEEEEEEE-C----SSEEEEES
T ss_pred             CccCCCCCCEEEEEec-C----CCEEEEEE
Confidence            4678999999999998 2    38999985

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=90.64  E-value=0.25  Score=33.35  Aligned_cols=26  Identities=15%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        28 ~eLs~~~Gd~i~v~~~~~----~~W~~g~~   53 (73)
T 3c0c_A           28 GELGFREGDLITLTNQID----ENWYEGML   53 (73)
T ss_dssp             TBCCBCTTCEEEEEEECS----SSEEEEEE
T ss_pred             CCccCcCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999999764    48999986

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=90.63  E-value=0.36  Score=32.17  Aligned_cols=26  Identities=12%  Similarity=0.507  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        30 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   55 (73)
T 3h0h_A           30 DDLSFHKGEKFQILNSSE----GDWWEARS   55 (73)
T ss_dssp             TBCCBCTTCEEEEEECSS----SSEEEEEE
T ss_pred             CcceEeCCCEEEEEEecC----CCeEEEEE
Confidence            467899999999998764    47999987

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=90.62  E-value=0.34  Score=32.34  Aligned_cols=25  Identities=12%  Similarity=0.094  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|+
T Consensus        21 ~eLs~~~Gd~i~v~~~~~----~gW~~g~   45 (71)
T 2fpf_A           21 DELELEVDDPLLVELQAE----DYWYEAY   45 (71)
T ss_dssp             TBCCBCTTCEEEEEEECT----TSEEEEE
T ss_pred             CcccCcCCcEEEEeEecC----CCEEEEE
Confidence            467899999999986644    6899997

>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A

Probab=90.60  E-value=0.15  Score=39.99  Aligned_cols=54  Identities=11%  Similarity=0.183  Sum_probs=38.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEE-------eccEEEEEEeccCCcceeeecCCCcccC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMI-------KGDFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~i-------KGdf~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      -..+|..||-|-+-.+.     .-||||+|...       ...-|.|.|.|.. +| -.|...+|.|-
T Consensus        19 ~~~~f~~GdlVwaK~~g-----~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~-~~-awv~~~~l~~f   79 (153)
T 4fu6_A           19 MTRDFKPGDLIFAKMKG-----YPHWPARVDEVPDGAVKPPTNKLPIFFFGTH-ET-AFLGPKDIFPY   79 (153)
T ss_dssp             SGGGCCTTCEEEECCTT-----SCCEEEEECCCC---CCCCTTCEEEEETTTC-CE-EEECGGGEEEH
T ss_pred             cccCCCCCCEEEEeCCC-----CCCCCEEEeEchhhccCCCCCEEEEEecCCC-Ce-EEeCHHHccCh
Confidence            35789999999887643     45999999543       2346899998753 33 57777777764

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=90.60  E-value=0.14  Score=35.24  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        32 ~eLsf~~Gd~i~Vl~~~~----~gWw~g~~   57 (72)
T 2l0a_A           32 NELTFKAGEIITVLDDSD----PNWWKGET   57 (72)
T ss_dssp             TBCCBCTTCEEEEEEEEE----TTEEEEEC
T ss_pred             CccCCCCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999998743    58999985

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=90.55  E-value=0.29  Score=31.94  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        21 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   46 (64)
T 2ak5_A           21 DELSFSKGDVIHVTRVEE----GGWWEGTH   46 (64)
T ss_dssp             TBCCBCTTCEEEEEECCT----TSEEEEEE
T ss_pred             CcccCCCCCEEEEeEecC----CCEEEEEE
Confidence            467899999999998654    58999985

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.47  E-value=0.28  Score=34.10  Aligned_cols=29  Identities=14%  Similarity=0.100  Sum_probs=22.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|+.+.  ..-.|||.|+..
T Consensus        23 ~eLsf~~Gd~i~v~~~~--~~~~~Ww~g~~~   51 (85)
T 2dlp_A           23 SLLSFHRGDLIKLLPVA--TLEPGWQFGSAG   51 (85)
T ss_dssp             SBCCBCTTCEEEECCCS--CCCTTEEEEESS
T ss_pred             CCccCcCCCEEEEEEcc--CCCCCeEEEEEC
Confidence            46789999999999872  223589999863

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=90.43  E-value=0.28  Score=32.45  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|+
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~   46 (70)
T 2cuc_A           22 EELDLQKGEGIRVLGKYQ----DGWLKGL   46 (70)
T ss_dssp             TBCCBCTTCEEEEEEEEE----TTEEEEE
T ss_pred             CcCCCCCCCEEEEEEecC----CCeEEEE
Confidence            467899999999998764    4899997

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=90.43  E-value=0.18  Score=33.95  Aligned_cols=26  Identities=15%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    -|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   47 (73)
T 2dbm_A           22 GELGFKEGDIITLTNQID----ENWYEGML   47 (73)
T ss_dssp             TCCCBCTTCEEECCBCSS----SSEEEEEE
T ss_pred             CCccCCCCCEEEEEEecC----CCEEEEEE
Confidence            468899999999998654    38999985

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=90.33  E-value=0.27  Score=32.74  Aligned_cols=27  Identities=26%  Similarity=0.556  Sum_probs=21.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+  ...|||.|+
T Consensus        21 ~eLs~~~Gd~i~v~~~~~--~~~~Ww~g~   47 (71)
T 1u5s_A           21 EELNFEKGETMEVIEKPE--NDPEWWKCK   47 (71)
T ss_dssp             SBCCCCSSCCEEEEECCC--TTTCEEEEE
T ss_pred             CcccCCCCCEEEEEECCC--CCCCCEEEE
Confidence            467899999999999742  245899997

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=90.30  E-value=0.37  Score=32.80  Aligned_cols=29  Identities=24%  Similarity=0.597  Sum_probs=23.8

Q ss_pred             CCCccCCCeEEEEeecCC-CCccceeeEEE
Q psy985           37 NSGFVENQEVEVFSKATE-GESCGWWKVIV   65 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~-~ep~gWW~a~V   65 (191)
                      ...|..||.|.|..+.++ ....|||.|+.
T Consensus        31 eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~   60 (80)
T 2v1r_A           31 EVALKKGDLMAILSKKDPLGRDSDWWKVRT   60 (80)
T ss_dssp             BCCBCTTCEEEEEEEECTTSCEEEEEEEEC
T ss_pred             EecCCCCCEEEEEECCCCCCCCCCcEEEEe
Confidence            677999999999998765 23469999986

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=90.13  E-value=0.18  Score=33.58  Aligned_cols=28  Identities=11%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKM   67 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~   67 (191)
                      ....|..||.|+|..+.++    +||.|+...
T Consensus        22 ~eLs~~~Gd~i~v~~~~~~----~Ww~g~~~~   49 (70)
T 2ecz_A           22 VEMSFRKGERITLLRQVDE----NWYEGRIPG   49 (70)
T ss_dssp             TBCCCCTTCBCEEEEEEET----TEEEEEETT
T ss_pred             CCcCCCCCCEEEEEEecCC----CeEEEEECC
Confidence            4678999999999987543    899998754

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=90.13  E-value=0.43  Score=31.96  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+..  ...|||.|+.
T Consensus        24 ~eLs~~~Gd~i~v~~~~~--~~~~W~~g~~   51 (73)
T 2k9g_A           24 DELTIKEGDIVTLINKDC--IDVGWWEGEL   51 (73)
T ss_dssp             TBCCBCTTCEEEEEECCS--SSTTEEEEEE
T ss_pred             CeeeECCCCEEEEEECCC--CCCCEEEEEE
Confidence            467899999999998751  2358999985

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=90.11  E-value=0.31  Score=32.50  Aligned_cols=26  Identities=19%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        20 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   45 (73)
T 3thk_A           20 REVTMKKGDILTLLNSTN----KDWWKVEV   45 (73)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEE
T ss_pred             CccCCCCCCEEEEEECCC----CCeEEEEE
Confidence            467899999999998764    57999973

>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}

Probab=89.96  E-value=0.56  Score=42.91  Aligned_cols=51  Identities=16%  Similarity=0.150  Sum_probs=42.9

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE   91 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e   91 (191)
                      -.|++|+.+|+--+-|..   .-..|+|..+.|..+.|.|-||+..|..++.-+
T Consensus       361 ~~F~~GMKLEAvD~~np~---~IcvATV~~v~~~~l~v~fDgw~~~~d~w~~~~  411 (437)
T 3feo_A          361 HGFRVGMKLEAVDLMEPR---LICVATVTRIIHRLLRIHFDGWEEEYDQWVDCE  411 (437)
T ss_dssp             CCCCTTCEEEEECTTSTT---CEEEEEEEEEETTEEEEEETTSCGGGCEEEETT
T ss_pred             ccCccCCEEEeecCCCCC---cEEEEEEeEEcCCEEEEEECCCCCcCCeEEeCC
Confidence            459999999998766655   455999999999999999999999898876543

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=89.94  E-value=0.29  Score=36.32  Aligned_cols=29  Identities=31%  Similarity=0.325  Sum_probs=22.9

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccc--eeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCG--WWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~g--WW~a~V~   66 (191)
                      .....|..||.|.|+.+.+   ..|  ||.|++.
T Consensus        36 ~~ELsf~~GDiI~Vl~k~~---~~g~dWW~G~~~   66 (108)
T 1i1j_A           36 CRFLTIHRGQVVYVFSKLK---GRGRLFWGGSVQ   66 (108)
T ss_dssp             TTBCCBCTTCEEEEEEEEC---GGGTTEEEEEEB
T ss_pred             CCccccCCCCEEEEEEecC---CCCCCEEEEEEC
Confidence            3467899999999999843   235  9999976

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=89.90  E-value=0.45  Score=31.70  Aligned_cols=26  Identities=12%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+..+   .|||.|+
T Consensus        26 ~eLs~~~Gd~i~v~~~~~~---~~Ww~g~   51 (71)
T 1csk_A           26 QDLPFCKGDVLTIVAVTKD---PNWYKAK   51 (71)
T ss_dssp             TBCCBCTTCEEEEEEECSS---TTEEEEE
T ss_pred             CcCCCCCCCEEEEeECCCC---CCCEEEE
Confidence            4678899999999984332   5899998

>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A

Probab=89.83  E-value=0.84  Score=34.05  Aligned_cols=55  Identities=11%  Similarity=0.136  Sum_probs=41.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEe-------ccEEEEEEeccCCcceeeecCCCcccCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIK-------GDFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK-------Gdf~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ...++..||-|-+-.+     -..||||+|..+-       ..-|.|.|.|.. +| -.|...+|.|-.
T Consensus        16 ~~~~~~~GdlVwaK~k-----GyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~-~~-awv~~~~l~pf~   77 (110)
T 1ri0_A           16 RQKEYKCGDLVFAKMK-----GYPHWPARIDEMPEAAVKSTANKYQVFFFGTH-ET-AFLGPKDLFPYE   77 (110)
T ss_dssp             CSSSCCTTCEEEEEET-----TEEEEEEEEECCCSSSSCCCSSCEEEEETTTT-EE-EEECSTTEECHH
T ss_pred             ccCCCCCCCEEEEEeC-----CCCCCCEEEecccHhhcCCCCCEEEEEEecCC-CE-EEECHHHccchh
Confidence            3568999999999774     4679999998642       347899999754 33 478888888764

>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}

Probab=89.78  E-value=0.66  Score=37.23  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+.+|+-+-+....+.    .|++|+|..+.+ +-+-|.|.  |--.++.|+..+||+..+.
T Consensus        63 ~~~~~~G~~c~a~~~~d~----~wyRa~V~~~~~~~~~~V~~v--DyG~~~~v~~~~l~~l~~~  120 (201)
T 4b9w_A           63 GFKAEIGRPCCAFFSGDG----NWYRALVKEILPSGNVKVHFV--DYGNVEEVTTDQLQAILPQ  120 (201)
T ss_dssp             CCCCCTTCEEEEEETTTT----EEEEEEEEEECTTSCEEEEET--TTCCEEEECGGGEEECCGG
T ss_pred             CCCCCCCCEEEEEECCCC----eEEEEEEEEECCCCeEEEEEE--ccCCEEEEEHHHhccChHh
Confidence            356789999988764443    599999999864 46788887  5456899999999998754

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=89.75  E-value=0.35  Score=32.92  Aligned_cols=27  Identities=15%  Similarity=0.188  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+..   -.|||.|+.
T Consensus        33 ~eLsf~~Gd~i~v~~~~~---~~gWw~g~~   59 (78)
T 1k1z_A           33 GFLRLNPGDIVELTKAEA---EHNWWEGRN   59 (78)
T ss_dssp             CCCCBCTTCEEEEEECCS---SCSCEEEEE
T ss_pred             CccCCCCCCEEEEEEcCC---CCCeEEEEE
Confidence            467899999999999742   348999985

>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}

Probab=89.73  E-value=0.96  Score=41.55  Aligned_cols=52  Identities=15%  Similarity=0.147  Sum_probs=44.7

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPER   92 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~er   92 (191)
                      ..|.+|+..|+--+-|   |.-.+.|+|..++|+..-|.|-||+..|.+++..+.
T Consensus       375 ~~F~~gmkLEAvD~~n---p~~icvATV~~v~~~~~~i~fDgw~~~~d~w~~~~S  426 (447)
T 3h6z_A          375 HGFEVGMSLECADLMD---PRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCES  426 (447)
T ss_dssp             CCCCTTCEEEEECTTS---TTCEEEEEEEEEETTEEEEECTTSCGGGCEEEETTC
T ss_pred             CccccCCEEEeecCCC---CCcEEEEEEeEecCCEEEEEeCCCCCcCCEEEecCC
Confidence            4799999999976555   566679999999999999999999999999986553

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.68  E-value=0.4  Score=31.69  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=22.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+    .|||.|+..
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~gW~~g~~~   48 (70)
T 2ct3_A           22 DELELREGDRVDVMQQCD----DGWFVGVSR   48 (70)
T ss_dssp             TBCCBCTTEEEEEEEECS----SSCEEEEES
T ss_pred             CCccCCCCCEEEEEEECC----CCEEEEEEC
Confidence            467899999999998764    589999764

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.64  E-value=0.38  Score=32.86  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=22.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+   ..|||.|+..
T Consensus        28 ~eLs~~~Gd~i~v~~~~~---~~~Ww~g~~~   55 (78)
T 2dl5_A           28 DELTIEEHEVLEVIEDGD---MEDWVKARNK   55 (78)
T ss_dssp             TBCCBCSSEEEEEEECCS---SSSEEEEECT
T ss_pred             CCCCCCCCCEEEEEeccC---CCCcEEEEeC
Confidence            467899999999999764   3589999764

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=89.54  E-value=0.12  Score=36.24  Aligned_cols=26  Identities=15%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|++
T Consensus        33 ~eLsf~~Gd~I~Vl~~~~----~gWw~g~~   58 (79)
T 1z9q_A           33 LELNFKAGDVIFLLSRIN----KDWLEGTV   58 (79)
T ss_dssp             TBCCCCTTCCBCCCEESS----SSEEEEEE
T ss_pred             CcccccCCCEEEEeEecC----CCEEEEEE
Confidence            467889999999998854    58999985

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.47  E-value=0.23  Score=33.10  Aligned_cols=27  Identities=26%  Similarity=0.558  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+    .|||.|+..
T Consensus        23 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~~   49 (70)
T 2ega_A           23 SELSLQAGEVVDVIEKNE----SGWWFVSTS   49 (70)
T ss_dssp             SSCCCCTTCBCEEEEECT----TSEEEEECS
T ss_pred             CcccCCCCCEEEEEEccC----CCeEEEEEC
Confidence            467899999999999754    689999743

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=89.46  E-value=0.34  Score=32.16  Aligned_cols=26  Identities=15%  Similarity=0.253  Sum_probs=21.1

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ...|..||.|+|..+..   -.|||.|+.
T Consensus        26 eLsf~~Gd~i~v~~~~~---~~~Ww~g~~   51 (70)
T 1gcq_C           26 FLRLNPGDIVELTKAEA---EHNWWEGRN   51 (70)
T ss_dssp             BCCBCTTCEEEEEECCT---TCSEEEEEE
T ss_pred             cCCcCCCCEEEEEeCCC---CCCCeEEEe
Confidence            67899999999999742   248999974

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=89.40  E-value=0.6  Score=29.79  Aligned_cols=27  Identities=15%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+   ..|||.|+.
T Consensus        17 ~eLs~~~Gd~i~v~~~~~---~~~Ww~g~~   43 (60)
T 2v1q_A           17 DELTIKSGDKVYILDDKK---SKDWWMCQL   43 (60)
T ss_dssp             TBCCBCTTCEEEEEESSS---CSSEEEEEE
T ss_pred             CCccCCCCCEEEEEeCCC---CCCCEEEEE
Confidence            467899999999998642   358999986

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=89.40  E-value=0.46  Score=31.99  Aligned_cols=27  Identities=19%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.+    .|||.|+..
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~~   48 (77)
T 2d8j_A           22 EDLSFRAGDKLQVLDTSH----EGWWLARHL   48 (77)
T ss_dssp             SBCCBCTTCCEEEEECCS----SSEEEEEEC
T ss_pred             CccCCCCCCEEEEEECCC----CCeEEEEEC
Confidence            467899999999999753    589999876

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.37  E-value=0.48  Score=31.86  Aligned_cols=28  Identities=25%  Similarity=0.528  Sum_probs=22.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++  -.|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~~--~~~Ww~g~~   49 (73)
T 2dm1_A           22 RELSLREGDVVRIYSRIGG--DQGWWKGET   49 (73)
T ss_dssp             TBCCBCTTCEEECCBSSSS--SSSCEEEEE
T ss_pred             CcCCCCCCCEEEEEEecCC--CCCeEEEEE
Confidence            4678999999999987542  348999985

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=89.35  E-value=0.076  Score=35.69  Aligned_cols=27  Identities=19%  Similarity=0.453  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.++    |||.|+..
T Consensus        21 ~eLs~~~Gd~i~v~~~~~~----~Ww~g~~~   47 (71)
T 1hsq_A           21 DELTFIKSAIIQNVEKQEG----GWWRGDYG   47 (71)
T ss_dssp             SSCCCCTTCCCBSCCCBTT----TEECCBCS
T ss_pred             CccCCCCCCEEEEEEecCC----CEEEEEEC
Confidence            4678999999999987543    89999863

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.33  E-value=0.49  Score=31.28  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=21.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.    ..|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~----~~~Ww~g~~   47 (68)
T 1x2k_A           22 DELYFEEGDIIYITDMS----DTNWWKGTS   47 (68)
T ss_dssp             TBCCCCSSCEEEEEECS----CSSEEEEES
T ss_pred             CcccCCCCCEEEEEEcC----CCCEEEEEE
Confidence            46789999999999873    368999985

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=89.32  E-value=0.41  Score=32.28  Aligned_cols=24  Identities=17%  Similarity=0.493  Sum_probs=20.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+ +    .|||.|+
T Consensus        19 ~ELsf~~Gd~i~vl~~-~----~~Ww~~~   42 (67)
T 2b86_A           19 QELDIKKNERLWLLDD-S----KTWWRVR   42 (67)
T ss_dssp             TSCCBCTTCEEEEEEC-S----SSSCEEE
T ss_pred             CccccCCCCEEEEEec-C----CCeEEEE
Confidence            4678999999999987 2    4999997

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=89.27  E-value=0.44  Score=31.47  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=22.3

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|.|..+.+    .|||.|+.
T Consensus        20 ~~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   46 (69)
T 4esr_A           20 SDELTIHRGDIIRVFFKDN----EDWWYGSI   46 (69)
T ss_dssp             TTBCCBCTTCEEEEEEECS----SSEEEEEE
T ss_pred             cCcCCCCCCCEEEEEEecC----CCeEEEEe
Confidence            3467899999999998764    47999976

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=89.25  E-value=0.27  Score=32.65  Aligned_cols=29  Identities=21%  Similarity=0.455  Sum_probs=22.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.++ ...|||.|+.
T Consensus        18 ~eLs~~~Gd~i~v~~~~~~-~~~~Ww~g~~   46 (69)
T 1wyx_A           18 DELSFRKGDIMTVLEQDTQ-GLDGWWLCSL   46 (69)
T ss_dssp             TBCCBCTTCEEEEEETTGG-GCTTEEEEEE
T ss_pred             CccCCcCCCEEEEeECCCC-CCCCcEEEEE
Confidence            4678999999999997632 1358999984

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=89.17  E-value=0.2  Score=34.12  Aligned_cols=27  Identities=19%  Similarity=0.407  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+    .|||.|+..
T Consensus        25 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~~   51 (76)
T 2ed1_A           25 DELTFIEGEVIIVTGEED----QEWWIGHIE   51 (76)
T ss_dssp             SBCCCCSSCEEEESSCCS----SSEEEEEET
T ss_pred             CCcCcCCCCEEEEEEecC----CCEEEEEEC
Confidence            467899999999987533    579999864

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=89.14  E-value=0.41  Score=33.00  Aligned_cols=25  Identities=20%  Similarity=0.542  Sum_probs=21.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.     .|||.|+.
T Consensus        40 ~eLs~~~Gd~i~v~~~~-----~~Ww~g~~   64 (86)
T 2oi3_A           40 EDLSFQKGDQMVVLEES-----GEWWKARS   64 (86)
T ss_dssp             SCCCCCTTCEEEEEEES-----SSEEEEEE
T ss_pred             CcCcCCCCCEEEEEEcC-----CCeEEEEE
Confidence            45778999999999976     28999987

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=89.08  E-value=0.2  Score=35.97  Aligned_cols=27  Identities=19%  Similarity=0.471  Sum_probs=22.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|+|..+.    ..|||.|+.
T Consensus        32 ~~eLsf~~Gd~i~V~~~~----~~gWw~g~~   58 (92)
T 2o2o_A           32 DDELELKVGDIIEVVGEV----EEGWWEGVL   58 (92)
T ss_dssp             SSCCCBCSSCEEECCCGG----GSSCBCCEE
T ss_pred             CccccccCCCEEEEeEec----CCCEEEEEE
Confidence            357889999999999764    358999985

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=89.05  E-value=0.46  Score=32.00  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+..  ...|||.|+.
T Consensus        17 ~eLs~~~Gd~i~vl~~~~--~~~gWw~g~~   44 (69)
T 2ydl_A           17 DELTIKEGDIVTLINKDC--IDVGWWEGEL   44 (69)
T ss_dssp             TBCCBCTTCEEEEEESCC--SSTTEEEEEE
T ss_pred             CccccCCCCEEEEEEcCC--CCCCEEEEEE
Confidence            468899999999998752  1358999985

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=88.92  E-value=0.48  Score=30.16  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|..+.    ..|||.|+..
T Consensus        16 ~eLs~~~Gd~i~v~~~~----~~gW~~g~~~   42 (59)
T 1yn8_A           16 NELRLAEGDIVFISYKH----GQGWLVAENE   42 (59)
T ss_dssp             TBCCBCTTCEEEEEEEE----ETTEEEEECT
T ss_pred             CCcCCCCCCEEEEEEcC----CCCeEEEEEC
Confidence            46789999999998874    3589999754

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=88.90  E-value=0.41  Score=31.43  Aligned_cols=25  Identities=16%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|.|..+.+    .|||.|+
T Consensus         4 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~   28 (63)
T 1tuc_A            4 REVTMKKGDILTLLNSTN----KDWWKVE   28 (63)
T ss_dssp             CCCCBCTTCEEEEEECCS----SSEEEEE
T ss_pred             cccCCCCCCEEEEEEecC----CCEEEEE
Confidence            357889999999999764    5799996

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=88.87  E-value=0.52  Score=31.67  Aligned_cols=25  Identities=16%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+  +   .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~--~---~~Ww~g~~   46 (72)
T 2jw4_A           22 QELDIKKNERLWLLDD--S---KSWWRVRN   46 (72)
T ss_dssp             TSCCCCTTCEEEEEEC--S---SSSEEEEC
T ss_pred             CcccCCCCCEEEEEEC--C---CCEEEEEE
Confidence            4678999999999985  2   38999974

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=88.82  E-value=0.48  Score=31.35  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.    ..|||.|+..
T Consensus        23 ~eLs~~~Gd~i~v~~~~----~~~Ww~g~~~   49 (69)
T 2dil_A           23 DELDLSAGDILEVILEG----EDGWWTVERN   49 (69)
T ss_dssp             SSCCBCTTCEEEEEECC----SSSEEEEEET
T ss_pred             CccCCCCCCEEEEEECC----CCCEEEEEEC
Confidence            46789999999999873    3589999863

>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A

Probab=88.70  E-value=0.61  Score=42.95  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=49.0

Q ss_pred             CcccccCCCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccC--Ccceee--ecCCCcccCC
Q psy985           25 FSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQ--STFTEI--VPPERMRQKN   97 (191)
Q Consensus        25 f~~VRlPP~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d--~~~teI--V~~erLR~~n   97 (191)
                      |.++.+++   ..-.|.+|+.+||--..+...+...|.|.|.++-|--....|.|.+  ..+.=.  +...+|+|+.
T Consensus        29 F~~~~~~~---~~~~~~~GmklEv~d~~~~~~~~~~WvAtV~~~~G~rL~Lry~G~~~d~~~DFW~~~~s~~ihPvG  102 (456)
T 3f70_A           29 FKHVPLYD---QWEDVMKGMKVEVLNSDAVLPSRVYWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIG  102 (456)
T ss_dssp             CTTSTTGG---GGGGCCTTCEEEEECCSCCC--CCEEEEEEEEEETTEEEEEETTCTTCCTTCEEEETTSTTEECTT
T ss_pred             hhcccccC---ccccccCCCEEEEecCCCCCCccceEEEEEeeecceeEEEEecccCCCCcCCcceeCCCCceeecc
Confidence            44554443   2246999999999987665556789999999999999999999985  233322  3344666654

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=88.65  E-value=0.56  Score=31.07  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+  +   .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~--~---~~Ww~~~~   46 (68)
T 1wxt_A           22 RELTVVQGEKLEVLDH--S---KRWWLVKN   46 (68)
T ss_dssp             SBCCBCTTCEEEEEEC--S---SSEEEEEC
T ss_pred             CcCCCCCCCEEEEEEc--C---CCEEEEEE
Confidence            4678999999999987  2   68999974

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=88.57  E-value=0.5  Score=31.79  Aligned_cols=25  Identities=16%  Similarity=0.445  Sum_probs=21.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|.|..+.+    .|||.|+
T Consensus        14 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~   38 (73)
T 2kxd_A           14 REVTMKKGDILTLLNSTN----KDWWKVE   38 (73)
T ss_dssp             CCCCBCTTCEEEEEECCS----SSEEEEE
T ss_pred             CEeeEcCCCEEEEEEecC----CCEEEEE
Confidence            468899999999999764    5899997

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.52  E-value=0.27  Score=32.49  Aligned_cols=26  Identities=15%  Similarity=0.491  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   47 (68)
T 1x2p_A           22 TQLSFLRGEKILILRQTT----ADWWWGER   47 (68)
T ss_dssp             TBCCCCTTCEEEEEECCS----SSEEEEEC
T ss_pred             CCcCCCCCCEEEEEEcCC----CCEEEEEE
Confidence            467889999999999763    58999974

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=88.44  E-value=0.38  Score=31.03  Aligned_cols=24  Identities=21%  Similarity=0.587  Sum_probs=20.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+     ..|||.|+
T Consensus        16 ~eLs~~~Gd~i~v~~~-----~~~Ww~~~   39 (60)
T 1i07_A           16 SELSVMKDDVLEILDD-----RRQWWKVR   39 (60)
T ss_dssp             TBCCBCTTCEEEECGG-----GCCEEEEE
T ss_pred             CcccCCCCCEEEEEEc-----CCCeEEEE
Confidence            4678999999999987     35899996

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=88.35  E-value=0.61  Score=30.97  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+.     .+||.|+.
T Consensus        23 ~eLs~~~Gd~i~v~~~~-----~~Ww~~~~   47 (68)
T 2k2m_A           23 SELSVKQRDVLEVLDDS-----RKWWKVRD   47 (68)
T ss_dssp             SBCCBCTTCEEEEEECS-----SSEEEEEC
T ss_pred             CcccCCCCCEEEEEEcC-----CCeEEEEe
Confidence            46789999999999962     58999975

>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}

Probab=88.30  E-value=1  Score=36.83  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEecc-EEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd-f~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+..|+-+-+....+.    .|++|+|..+.++ -+-|.|.  |--.++.|+...||+..+.
T Consensus        63 ~~~~~~G~~c~a~~~~d~----~WyRa~V~~~~~~~~~~V~~v--DyGn~~~v~~~~l~~l~~~  120 (226)
T 4b9x_A           63 GFKAEIGRPCCAFFSGDG----NWYRALVKEILPSGNVKVHFV--DYGNVEEVTTDQLQAILPQ  120 (226)
T ss_dssp             -CCCCTTCEEEEEETTTT----EEEEEEEEEECSSSEEEEECT--TTCCEEEEEGGGEECCCGG
T ss_pred             CCCCCCCCEEEEEECCCC----eEEEEEEEEECCCCeEEEEEE--ecCCEEEEEHHHhccChHH
Confidence            356788999988664443    5999999998644 7788887  5556899999999998754

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=88.29  E-value=0.5  Score=33.00  Aligned_cols=25  Identities=16%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+ +    .|||.|+.
T Consensus        46 ~eLs~~~Gd~i~v~~~-~----~~Ww~g~~   70 (86)
T 2jxb_A           46 QELDIKKNERLWLLDD-S----KTWWRVRN   70 (86)
T ss_dssp             SBCCCCTTEEEEEEEC-C----SSEEEEEC
T ss_pred             CEeccCCCCEEEEEec-C----CCeEEEEE
Confidence            4567899999999986 2    39999973

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.29  E-value=0.58  Score=31.75  Aligned_cols=27  Identities=30%  Similarity=0.710  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.    ..|||.|+..
T Consensus        24 ~eLs~~~Gd~i~vl~~~----~~gWw~g~~~   50 (75)
T 2egc_A           24 ETAGFQEGVSMEVLERN----PNGWWYCQIL   50 (75)
T ss_dssp             SSCCBCTTCEEEECEEC----TTSEEEEEEC
T ss_pred             CcCCCCCCCEEEEEEcC----CCCeEEEEeC
Confidence            36789999999999875    4589999874

>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A

Probab=88.29  E-value=1.3  Score=40.67  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=43.0

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPP   90 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~   90 (191)
                      ..|.+|+..|+--+-|   |.-.+.|.|..+.|....|.|-||+..|.+++.-
T Consensus       365 ~~F~~GMKLEAvD~~n---p~~icvATV~~v~~~~l~i~fDgw~~~~d~w~~~  414 (456)
T 3f70_A          365 HGFKVGMKLEAVDLME---PRLICVATVKRVVHRLLSIHFDGWDSEYDQWVDC  414 (456)
T ss_dssp             CCCCTTCEEEEECTTS---TTCEEEEEEEEEETTEEEEEETTSCGGGCEEEET
T ss_pred             cccccCCEEEeecCCC---CCcEEEEEEEEecCCEEEEEeCCCCCCCCeEeec
Confidence            4599999999975555   5566799999999999999999999999988764

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=88.26  E-value=0.3  Score=32.19  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.   ...|||.|+..
T Consensus        22 ~eLs~~~Gd~i~v~~~~---~~~~Ww~g~~~   49 (67)
T 2kxc_A           22 TLLSFAQGDVITLLIPE---EKDGWLYGEHD   49 (67)
T ss_dssp             SBCCBCTTCEEEESSSS---CBTTEEEEEES
T ss_pred             CCCcCCCCCEEEEeECC---CCCCcEEEEEC
Confidence            46889999999998753   24589999865

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=88.25  E-value=0.61  Score=29.99  Aligned_cols=28  Identities=7%  Similarity=0.210  Sum_probs=22.3

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|.|..+.++   .+||.|+.
T Consensus        19 ~~eLs~~~Gd~i~v~~~~~~---~~W~~~~~   46 (63)
T 3eg3_A           19 DNTLSITKGEKLRVLGYNHN---GEWCEAQT   46 (63)
T ss_dssp             SSBCCBCTTCEEEEEEECTT---SSEEEEEE
T ss_pred             CCccCCCCCCEEEEEEeCCC---CCeEEEEE
Confidence            34688999999999997433   46999987

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=88.15  E-value=0.62  Score=32.61  Aligned_cols=29  Identities=21%  Similarity=0.471  Sum_probs=23.5

Q ss_pred             CCCccCCCeEEEEeecCCC-CccceeeEEE
Q psy985           37 NSGFVENQEVEVFSKATEG-ESCGWWKVIV   65 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~-ep~gWW~a~V   65 (191)
                      ...|..||.|.|..+.++. .-.|||.|+.
T Consensus        31 eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~   60 (92)
T 1jqq_A           31 EVALKKGDLMAILSKKDPLGRDSDWWKVRT   60 (92)
T ss_dssp             BCCBCTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CcCCCCCCEEEEEECCCCCCCCCCCeEEEe
Confidence            6778999999999987652 2469999986

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.13  E-value=0.24  Score=33.23  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|+
T Consensus        23 ~eLsf~~Gd~i~v~~~~~----~~W~~g~   47 (71)
T 2gqi_A           23 DEISFLKGDMFIVHNELE----DGWMWVT   47 (71)
T ss_dssp             SCCCCCTTCBCCCCEECS----SSCEEEE
T ss_pred             CCCCCCCCCEEEEEEecC----CCEEEEE
Confidence            467899999999998754    3899997

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=88.11  E-value=0.62  Score=32.49  Aligned_cols=26  Identities=12%  Similarity=0.491  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus        21 ~eLsf~~Gd~i~vl~~~~----~~Ww~g~~   46 (84)
T 4ag1_C           21 TDLSFHKGEKFQILEFGP----GDWWEARS   46 (84)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEE
T ss_pred             CcccccCCCEEEEEEecC----CCeEEEEE
Confidence            468899999999999764    57999987

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=88.05  E-value=0.72  Score=36.82  Aligned_cols=26  Identities=8%  Similarity=0.221  Sum_probs=21.7

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|.|+.+.+     |||.|+.
T Consensus        31 ~~eLs~~~Gd~i~v~~~~~-----~W~~g~~   56 (184)
T 3a98_A           31 APQLSLQIGDVVRIQETCG-----DWYRGYL   56 (184)
T ss_dssp             TTBCCBCTTCEEEEEEEET-----TEEEEEE
T ss_pred             CCCCCcCCCCEEEEEecCC-----CEEEEEE
Confidence            3567899999999998743     6999998

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=88.01  E-value=0.37  Score=34.33  Aligned_cols=30  Identities=20%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             CCCCccCCCeEEEEeecCCC-CccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEG-ESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~-ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++. .-.|||.|+.
T Consensus        44 ~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~   74 (89)
T 2rf0_A           44 EELTLRRGDRVQVLSQDCAVSGDEGWWTGQL   74 (89)
T ss_dssp             TBCCBCTTCEEEEEECCHHHHSSTTEEEEEC
T ss_pred             CccccCCCCEEEEEeccCCcccCCCEEEEEE
Confidence            46788999999999975210 1358999986

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.84  E-value=0.34  Score=32.15  Aligned_cols=29  Identities=24%  Similarity=0.613  Sum_probs=22.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++ ...|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~~-~~~~Ww~g~~   50 (71)
T 2cre_A           22 DELAFSRGDILTILEQHVP-ESEGWWKCLL   50 (71)
T ss_dssp             SBCCCCSSCCEEEEESCCT-TSTTEEEEES
T ss_pred             CCCCCCCCCEEEEeEcCCC-CCCCcEEEEE
Confidence            4678999999999997522 2468999983

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=87.83  E-value=0.43  Score=39.24  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        17 ~el~~~~gd~i~v~~~~~----~~w~~~~~   42 (283)
T 3jv3_A           17 DELAFSKGQIINVLNKED----PDWWKGEV   42 (283)
T ss_dssp             TBCCBCTTCEEEEEECCS----TTEEEEEE
T ss_pred             CcCCCCCCCEEEEEecCC----CCEEEEEE
Confidence            468899999999999864    47999974

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.72  E-value=0.69  Score=30.63  Aligned_cols=25  Identities=20%  Similarity=0.521  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|+.+  +   .+||.|+-
T Consensus        22 ~eLs~~~Gd~i~v~~~--~---~~Ww~~~~   46 (68)
T 1wxb_A           22 NELSVLKDEVLEVLED--G---RQWWKLRS   46 (68)
T ss_dssp             SBCCBCTTCEEEEEEC--S---SSEEEEEC
T ss_pred             CccCCCCCCEEEEEEc--C---CCEEEEEE
Confidence            4678999999999986  1   68999974

>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}

Probab=87.68  E-value=0.84  Score=33.83  Aligned_cols=55  Identities=11%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEE---E--------e-ccEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKM---I--------K-GDFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~---i--------K-Gdf~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ..++..||-|-+-.+     -..||||+|..   +        + +..|.|.|.|. .+| -.|...+|.|-..
T Consensus         3 ~~~~~~GdlVwaK~~-----gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~-~~~-aWv~~~~l~p~~~   69 (108)
T 2l89_A            3 DDRLNFGDRILVKAP-----GYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPD-FNF-AWVKRNSVKPLLD   69 (108)
T ss_dssp             SCCCCTTEEEEEECS-----SSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTT-TEE-EEECGGGEEECCH
T ss_pred             CCcccCCCEEEEEeC-----CcCCCceEecCcccCcHHHhhccCCCCeEEEEECCC-CCE-EEEchhhceeCCH
Confidence            468899999988775     46799999943   2        2 34799999884 334 7788888887653

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=87.67  E-value=0.31  Score=33.03  Aligned_cols=26  Identities=15%  Similarity=0.348  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        25 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   50 (76)
T 1ujy_A           25 DELSVCKGDIIYVTRVEE----GGWWEGTL   50 (76)
T ss_dssp             TSCCBCSSCCEEESSCCS----SSCEEEEE
T ss_pred             CcccCCCCCEEEEEEecC----CCEEEEEE
Confidence            468899999999987643    58999985

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A

Probab=87.67  E-value=0.66  Score=35.78  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             EEeecCChhHHHHHHhh--hchHHHHHhhhccEEEEcC--CCC-------eeEEEeCchhhHhhhhhhhhhhhhhHH
Q psy985          109 KFDIEVPLDVQEFAKME--GAHKDFQKAIAAAIVRYIP--DKG-------ALSVISRDEACQKRASMIKDMHFRNLN  174 (191)
Q Consensus       109 k~~i~VPedLre~~~~~--~~h~dF~kaiga~~v~y~p--e~~-------~Lvvls~~e~~~kRA~mL~dmHfr~Lr  174 (191)
                      ..++.||++..-.+==-  ..-++.++..|+..+...+  +.+       .-+.|+++...+.+|..|.++|+.+|+
T Consensus        68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l~  144 (144)
T 2qnd_A           68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYLK  144 (144)
T ss_dssp             EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTCC
T ss_pred             eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhcC
Confidence            37899999988876443  3445889999986554443  222       236788999999999999999999874

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=87.39  E-value=0.39  Score=32.10  Aligned_cols=28  Identities=14%  Similarity=0.204  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.   ...|||.|+..
T Consensus        23 ~eLs~~~Gd~i~v~~~~---~~~gWw~g~~~   50 (72)
T 1spk_A           23 TLLSFAQGDVLTLLIPE---EKDGWLYGEHD   50 (72)
T ss_dssp             SBCCBCTTCEEEECCSS---CBTTEEEEEET
T ss_pred             CCCcCCCCCEEEEeEcc---CCCCcEEEEEC
Confidence            46889999999998752   34589999865

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=87.36  E-value=0.58  Score=31.13  Aligned_cols=26  Identities=15%  Similarity=0.363  Sum_probs=20.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+| .+.+    .|||.|+..
T Consensus        25 ~eLs~~~Gd~i~v-~~~~----~~Ww~g~~~   50 (72)
T 2kgt_A           25 EELSFRAGDVFHV-ARKE----EQWWWATLL   50 (72)
T ss_dssp             TSCBCCTTCCEEE-EEEC----SSCEEEEEE
T ss_pred             CCcCCCCCCEEEE-eeCC----CCEEEEEEc
Confidence            4678899999999 7643    589999864

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.23  E-value=0.39  Score=31.94  Aligned_cols=27  Identities=33%  Similarity=0.583  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+    .|||.|+..
T Consensus        23 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~~   49 (71)
T 2dnu_A           23 DEIGFEKGVTVEVIRKNL----EGWWYIRYL   49 (71)
T ss_dssp             TBCCBCTTCEEEECCCCS----SSEEEEEET
T ss_pred             CCCcCCCCCEEEEeECCC----CCeEEEEEC
Confidence            467899999999987643    589999876

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=87.22  E-value=0.43  Score=35.68  Aligned_cols=25  Identities=8%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|.+||.|.|..+.     -|||.|+.
T Consensus        74 ~eLsf~~Gd~i~vl~~~-----~gWw~g~~   98 (119)
T 2rqr_A           74 PQLSLQIGDVVRIQETC-----GDWYRGYL   98 (119)
T ss_dssp             TBCCBCTTCEEEEEEEE-----TTEEEEEE
T ss_pred             CcccCcCCCEEEEEEcC-----CCEEEEEE
Confidence            46778999999999973     28999987

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=87.10  E-value=0.72  Score=31.13  Aligned_cols=26  Identities=15%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+..   ..|||.|+
T Consensus        25 ~eLs~~~Gd~i~v~~~~~---~~gW~~g~   50 (77)
T 2enm_A           25 NELTVTEGEIITVTNPNV---GGGWLEGK   50 (77)
T ss_dssp             SBCCCCTTCEEEEEESCC---SSSEEEEE
T ss_pred             CeecCCCCCEEEEeEccC---CCCeEEEE
Confidence            467899999999999742   25899998

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=87.07  E-value=0.53  Score=30.95  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ...|..||.|.|..+.   ...|||.|+.
T Consensus        24 ~Lsf~~Gd~i~v~~~~---~~~gW~~g~~   49 (67)
T 3rnj_A           24 LLSFKEGDLITLLVPE---ARDGWHYGES   49 (67)
T ss_dssp             BCCBCTTCEEEECSSS---CBTTEEEEEE
T ss_pred             CccCCCCCEEEEeecc---CCCCCEEEEE
Confidence            3789999999998642   3349999983

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=86.97  E-value=0.64  Score=30.75  Aligned_cols=27  Identities=15%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+   ..|||.|+.
T Consensus        21 ~eLs~~~Gd~i~v~~~~~---~~~Ww~g~~   47 (71)
T 2jt4_A           21 DELTIKSGDKVYILDDKK---SKDWWMCQL   47 (71)
T ss_dssp             TBCCBCTTCEEEEEESSS---CSSEEEEEE
T ss_pred             CcccCCCCCEEEEEECCC---CCCCEEEEE
Confidence            467899999999999652   358999986

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.97  E-value=0.5  Score=32.27  Aligned_cols=28  Identities=21%  Similarity=0.500  Sum_probs=22.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+.+.  -.|||.|+.
T Consensus        32 ~eLsf~~Gd~i~v~~~~~~--~~~Ww~g~~   59 (80)
T 2d8h_A           32 GDLNFQAGDRITVISKTDS--HFDWWEGKL   59 (80)
T ss_dssp             TBCEECTTCEEEEEECCSC--SSSEEEEEE
T ss_pred             CeeeEcCCCEEEEeECcCC--CCCeEEEEE
Confidence            3567899999999997652  358999987

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=86.94  E-value=0.25  Score=33.76  Aligned_cols=26  Identities=19%  Similarity=0.472  Sum_probs=21.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+    .|||.|+.
T Consensus         6 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   31 (77)
T 2jmc_A            6 REVTMKKGDILTLLNSTN----KDWWKVEV   31 (77)
T ss_dssp             CCCCCCTTCEEECCCCCC----SSCCCEEE
T ss_pred             CccCCCCCCEEEEEEecC----CCEEEEEE
Confidence            467899999999998764    57999973

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=86.89  E-value=0.36  Score=32.68  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.++   .|||.|+.
T Consensus        24 ~eLs~~~Gd~i~v~~~~~~---~~Ww~g~~   50 (74)
T 1gbq_A           24 DELSFKRGDILKVLNEECD---QNWYKAEL   50 (74)
T ss_dssp             TBCCBCTTCEEECCBCSSC---SSEEEEEE
T ss_pred             CeeeEcCCCEEEEeEecCC---CCEEEEEE
Confidence            4678999999999986633   47999984

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=86.81  E-value=0.38  Score=33.16  Aligned_cols=30  Identities=13%  Similarity=0.139  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeec---------CCCCcc--ceeeEEE
Q psy985           36 INSGFVENQEVEVFSKA---------TEGESC--GWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sra---------n~~ep~--gWW~a~V   65 (191)
                      ....|..||.|+|..+.         +++.+.  |||.|+.
T Consensus        20 ~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~   60 (83)
T 3i5r_A           20 EDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYN   60 (83)
T ss_dssp             TBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEE
T ss_pred             CccccCCCCEEEEeeccccccccccccccCCCCCccEEEEe
Confidence            46889999999999652         233334  9999964

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.40  E-value=0.49  Score=32.39  Aligned_cols=25  Identities=16%  Similarity=0.144  Sum_probs=21.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+     ..|||.|+.
T Consensus        32 ~eLs~~~Gd~i~v~~~-----~~gW~~g~~   56 (79)
T 1x6b_A           32 DEVTLQQADVVLVLQQ-----EDGWLYGER   56 (79)
T ss_dssp             SBCCCCTTEEEEEEEE-----ETTEEEEEE
T ss_pred             CCcCCCCCCEEEEEEe-----CCCEEEEEE
Confidence            4577899999999997     358999986

>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*

Probab=86.35  E-value=1.4  Score=35.40  Aligned_cols=57  Identities=7%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEE--E------------------------------eccEEEEEEeccCCcc
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKM--I------------------------------KGDFHVVEYLGCQSTF   84 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~--i------------------------------KGdf~vVey~~~d~~~   84 (191)
                      ...|..||-|.+-.+     -.=||+|.|.-  +                              +...|.|.|.|-+.+|
T Consensus        34 ~~~~~pgdlVWAK~~-----GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~  108 (158)
T 3pfs_A           34 RGDLEPLELVWAKCR-----GYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTW  108 (158)
T ss_dssp             CSCCCTTCEEEEECT-----TSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCE
T ss_pred             CCCCCCCCEEEEecC-----CCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCce
Confidence            478999999999883     45599999975  2                              2348999999876677


Q ss_pred             eeeecCCCcccCCCC
Q psy985           85 TEIVPPERMRQKNTN   99 (191)
Q Consensus        85 teIV~~erLR~~n~n   99 (191)
                       -.|..++|+|...+
T Consensus       109 -aWV~~~~L~Pl~~d  122 (158)
T 3pfs_A          109 -QWLPRDKVLPLGVE  122 (158)
T ss_dssp             -EEEEGGGEEECSSC
T ss_pred             -EeeccccEeecCCc
Confidence             78888999987643

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.25  E-value=0.39  Score=33.91  Aligned_cols=29  Identities=14%  Similarity=0.070  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|.+||.|+|..+.....-.|||.|+
T Consensus        31 ~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~   59 (94)
T 2e5k_A           31 DELELVPGDFIFMSPMEQTSTSEGWIYGT   59 (94)
T ss_dssp             SBCCBCTTCEEEECGGGCCSTTTTEEEEE
T ss_pred             CCcCCCCCCEEEEEECcCCCCCCCcEEEE
Confidence            46789999999999875322236899998

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=86.14  E-value=0.64  Score=36.98  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=21.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus       173 ~eL~~~~Gd~i~v~~~~~----~~W~~g~~  198 (217)
T 1gri_A          173 GELGFRRGDFIHVMDNSD----PNWWKGAC  198 (217)
T ss_dssp             TBCCCCTTCEEEEEECCS----SSEEEEEC
T ss_pred             CcCCCCCCCEEEEEEeCC----CCeEEEEE
Confidence            356788999999999854    48999987

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=85.97  E-value=1  Score=32.24  Aligned_cols=26  Identities=12%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        42 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   67 (109)
T 2yt6_A           42 EDLSFKKGERFQIINNTE----GDWWEARS   67 (109)
T ss_dssp             TSCCCCTTCEEEEEECSC----TTCEEEEE
T ss_pred             CccCCCCCCEEEEEEccC----CCcEEEEE
Confidence            456789999999998764    58999985

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=85.66  E-value=0.85  Score=33.96  Aligned_cols=31  Identities=13%  Similarity=0.131  Sum_probs=22.9

Q ss_pred             CCCCccCCCeEEEEeecCC-CCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATE-GESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~-~ep~gWW~a~V~   66 (191)
                      ....|..||.|+|..+.+. ....|||.|+..
T Consensus        59 dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~   90 (115)
T 1bb9_A           59 DELQLKAGDVVLVIPFQNPEEQDEGWLMGVKE   90 (115)
T ss_dssp             TBCCBCTTCEEEEECCSCGGGCCTTEEEEEEH
T ss_pred             CccCcCCCCEEEEeeccCCcccCCCeEEEEeC
Confidence            3567899999999995321 334699999764

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.47  E-value=0.86  Score=31.54  Aligned_cols=26  Identities=19%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+.+    .|||.|+.
T Consensus        34 ~eLs~~~Gd~i~v~~~~~----~~Ww~~~~   59 (85)
T 2yuq_A           34 QELALRRNEEYCLLDSSE----IHWWRVQD   59 (85)
T ss_dssp             SBCCCCBTEEEEEEECCS----SSEEEEEC
T ss_pred             CcCCCCCCCEEEEEEecC----CCeEEEEE
Confidence            356789999999998764    48999964

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=85.02  E-value=0.82  Score=30.45  Aligned_cols=27  Identities=11%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      +....|..||.|.|..+.     .|||.|+..
T Consensus        25 ~~eLs~~~Gd~i~v~~~~-----~~W~~g~~~   51 (74)
T 2m0y_A           25 ADELSLQIGDTVHILETY-----EGWYRGYTL   51 (74)
T ss_dssp             SSBCCEETTEEEEEEEBS-----SSCEEEEES
T ss_pred             cCcccCCCCCEEEEEEcC-----CCeEEEEEC
Confidence            356889999999999872     479999874

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=84.86  E-value=0.98  Score=35.09  Aligned_cols=26  Identities=23%  Similarity=0.603  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus       133 ~eLsf~~Gd~i~v~~~~~----~~Ww~g~~  158 (174)
T 3qwx_X          133 TDLPFEQGERLEILSKTN----QDWWEARN  158 (174)
T ss_dssp             TBCCBCTTCEEEEEECCS----SSEEEEEC
T ss_pred             CccccccCCEEEEEEccC----CCeEEEEE
Confidence            456789999999998763    49999985

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=84.79  E-value=0.25  Score=33.03  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=20.7

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+ +    .|||.|+.
T Consensus        23 ~eLs~~~Gd~i~v~~~-~----~~Ww~g~~   47 (69)
T 1uhf_A           23 GDLTFTEGEEILVTQK-D----GEWWTGSI   47 (69)
T ss_dssp             SBCCBCTTCEEEECEE-E----TTEEEECS
T ss_pred             CccCCCCCCEEEEEEe-C----CCEEEEEe
Confidence            4678999999999887 2    58999973

>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*

Probab=84.75  E-value=1.3  Score=34.74  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=40.3

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEec--------cEEEEEEeccCCcceeeecCCCcccC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG--------DFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG--------df~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      ....+..||-|-+-.+     -..||+|+|.....        ..|.|.|.|.. +| -.|..++|.|-
T Consensus         8 ~~~~~~~GDlVWaKvk-----GyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~-~~-awv~~~~L~p~   69 (147)
T 1khc_A            8 DDKEFGIGDLVWGKIK-----GFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDG-KF-SEISADKLVAL   69 (147)
T ss_dssp             SSSSCCTTCEEEEEET-----TTEEEEEEEECGGGTTSCCCCTTEEEEEETTTC-CE-EEEEGGGCEET
T ss_pred             CCccCcCCCEEEEecC-----CcCCCCEEeccchhhhcccCCCCeEEEEEecCC-CE-EEEcHHHCccc
Confidence            3568999999999885     45899999985322        46889998754 34 66777888875

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=84.59  E-value=0.95  Score=30.94  Aligned_cols=28  Identities=14%  Similarity=0.241  Sum_probs=21.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+..  .-.|||.|+.
T Consensus        32 ~eLs~~~Gd~i~v~~~~~--~~~~Ww~g~~   59 (81)
T 1x43_A           32 TELSLLADEVITVFSVVG--MDSDWLMGER   59 (81)
T ss_dssp             TBCCCCTTCEEEEECCTT--CCTTEEEEEE
T ss_pred             CcCCCCCCCEEEEEEcCC--CCCCcEEEEE
Confidence            356789999999998743  1248999974

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=84.52  E-value=0.36  Score=31.89  Aligned_cols=26  Identities=19%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|..+.+    .|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   47 (68)
T 1wi7_A           22 DELELKVGDIIEVVGEVE----EGWWEGVL   47 (68)
T ss_dssp             TBCCBCTTCEECCCEEEE----TTEEEECS
T ss_pred             CCccCcCCCEEEEEEcCC----CCeEEEEE
Confidence            467899999999998743    58999973

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=84.10  E-value=1.2  Score=30.90  Aligned_cols=25  Identities=20%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+ +    .|||.|+.
T Consensus        18 ~eLs~~~Gd~i~v~~~-~----~~Ww~g~~   42 (90)
T 3reb_B           18 DDLSFQKGDQMVVLEE-S----GEWWKARS   42 (90)
T ss_dssp             TBCCBCTTCEEEEEEC-S----SSEEEEEE
T ss_pred             CcCCCCCCCEEEEEEe-C----CCEEEEEE
Confidence            4688999999999986 2    37999986

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=84.06  E-value=0.67  Score=34.49  Aligned_cols=28  Identities=14%  Similarity=0.289  Sum_probs=23.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .+.-|..|+.+||-...+  .|.|||+|+=
T Consensus        42 ~dLp~~~GE~LeII~~~e--~p~g~Wl~RN   69 (96)
T 2gtj_A           42 NELSFKQGEQIEIIRITD--NPEGKWLGRT   69 (96)
T ss_dssp             SCCEECTTCCEEEEECTT--CSSSCCEEEC
T ss_pred             ccCCcCCCCEEEEEEccC--CCCCeEEEEC
Confidence            577889999999988554  4899999974

>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}

Probab=83.61  E-value=0.74  Score=42.28  Aligned_cols=60  Identities=15%  Similarity=0.209  Sum_probs=40.9

Q ss_pred             CCccCCCeEEEEeec--------CCCCccceeeEEEEEEeccEEEEEEeccCC-cceee--ecCCCcccCC
Q psy985           38 SGFVENQEVEVFSKA--------TEGESCGWWKVIVKMIKGDFHVVEYLGCQS-TFTEI--VPPERMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sra--------n~~ep~gWW~a~V~~iKGdf~vVey~~~d~-~~teI--V~~erLR~~n   97 (191)
                      -.|.+|+.+||-.+.        ..+.|-..|.|.|.++-|--....|.|.+. .+.=.  +....|+|+.
T Consensus        35 ~~~~~GMklEv~~~~~~~~~~~~~~~~p~~~WvAtV~~~~G~rLlLry~G~~~d~~DFW~~~~S~~ihPvG  105 (447)
T 3h6z_A           35 DNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDSHDFWVNLCNAEVHSVG  105 (447)
T ss_dssp             TTCCTTCEEEEC----------------CCBEEEEEEEEETTEEEEEETTCSSGGGCEEEETTTSSCBCTT
T ss_pred             hhcCCCCEEEEecCCcccccccccccCCCcEEEEEEhhhcccEEEEEEccCCCCCCCccccCCCCceecCc
Confidence            579999999996532        235678999999999999999999999863 23222  2334567765

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=83.55  E-value=0.9  Score=30.08  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+..  ...|||.|+.
T Consensus        22 ~eLs~~~Gd~i~v~~~~~--~~~~W~~g~~   49 (70)
T 2da9_A           22 DELTIKEGDIVTLINKDC--IDVGWWEGEL   49 (70)
T ss_dssp             TBCCCCTTEEEEEEECCC--SSTTEEEEEC
T ss_pred             CEeeEcCCCEEEEEECCC--CCCCeEEEEE
Confidence            467899999999998742  2358999984

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=83.48  E-value=0.51  Score=31.06  Aligned_cols=25  Identities=12%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|..+.+    .|||.|+
T Consensus        23 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~   47 (67)
T 1aww_A           23 NDLQLRKGDEYFILEESN----LPWWRAR   47 (67)
T ss_dssp             SSCCCCSSCEEECCCCCS----SSEECCB
T ss_pred             CCccCCCCCEEEEEEccC----CCcEEEE
Confidence            467899999999998744    4799997

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=82.81  E-value=1.6  Score=32.55  Aligned_cols=31  Identities=6%  Similarity=0.098  Sum_probs=24.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEec
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG   70 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG   70 (191)
                      ....|..||.|+|..+.+    .|||.|+.....|
T Consensus        18 ~ELsf~~Gd~i~vl~~~~----~~Ww~g~~~~~~g   48 (120)
T 2kym_A           18 DELDVSPGENLSICAHYD----YEWFIAKPINRLG   48 (120)
T ss_dssp             TCCCBCTTCEEEEEEEET----TTEEEEEESSSCS
T ss_pred             CccCCCCCCEEEEEEecC----CCEEEEEECCCCC
Confidence            468899999999999843    4899998643343

>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0

Probab=82.67  E-value=1.1  Score=35.57  Aligned_cols=55  Identities=16%  Similarity=0.180  Sum_probs=41.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEe--------ccEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIK--------GDFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK--------Gdf~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ...|..||-|-+-.+.     ..||+|+|....        ...|-|.|-|...  .-.|..++|.|-..
T Consensus        14 g~~f~~GDLVWaKvkG-----~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~--~awv~~~~L~pf~e   76 (154)
T 3llr_A           14 GRGFGIGELVWGKLRG-----FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGK--FSVVCVEKLMPLSS   76 (154)
T ss_dssp             SCCCCTTCEEEECCTT-----SCCEEEEEECGGGTTSCCCCTTEEEEEETTTCC--EEEEEGGGEEEGGG
T ss_pred             CCCCccCCEEEEecCC-----CCCCCEEEecccccccccCCCCEEEEEEeCCCC--EEEEcHHHCcchhh
Confidence            4689999999987744     579999998753        3478899987752  46778888877643

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=81.80  E-value=1.6  Score=32.77  Aligned_cols=26  Identities=8%  Similarity=-0.043  Sum_probs=21.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .+.-|..|+.+||-...++    +||+|+=
T Consensus        56 ~DLpfkkGE~LeVI~~~e~----~wwLcRN   81 (102)
T 1ri9_A           56 RDLQVKPGESLEVIQTTDD----TKVLCRN   81 (102)
T ss_dssp             TBCCCCTTCBCEEEEESSS----SEEEEEE
T ss_pred             ccCCcCCCCEEEEEEeCCC----CEEEEEC
Confidence            6788999999999877663    9999964

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=81.52  E-value=1.1  Score=38.24  Aligned_cols=26  Identities=15%  Similarity=0.173  Sum_probs=21.1

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ...|.+||.|.|+.+.+    -|||.|++.
T Consensus       255 eL~~~~Gd~i~v~~~~~----~gWw~g~~~  280 (304)
T 2eyz_A          255 ALALEVGELVKVTKINV----SGQWEGECN  280 (304)
T ss_dssp             CCCBCTTSCCEEEEECT----TSCEEEEET
T ss_pred             eecccCCCEEEEEEecC----CCeEEEEEC
Confidence            45688999999998755    489999864

>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A

Probab=81.41  E-value=1.4  Score=31.94  Aligned_cols=52  Identities=15%  Similarity=0.202  Sum_probs=36.9

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEe-------ccEEEEEEeccCCcceeeecCCCcccC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIK-------GDFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iK-------Gdf~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      .+|..||-|-+-.+     -+.||+|+|..+.       ..-|.|.|.|...  .-.|..++|.|-
T Consensus         4 ~~f~~GdlVwaK~~-----g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~--~awv~~~~l~pf   62 (94)
T 3qby_A            4 HAFKPGDLVFAKMK-----GYPHWPARIDDIADGAVKPPPNKYPIFFFGTHE--TAFLGPKDLFPY   62 (94)
T ss_dssp             CCCCTTCEEEECCT-----TSCCEEEEECCCCTTSBCCCTTCEEEEETTTCC--EEEECGGGEEEH
T ss_pred             CcCccCCEEEEecC-----CCCCCCEEEeecccccccCCCCEEEEEEEcCCC--cceEchhHeeEH
Confidence            57899999988774     3569999998763       2357888887532  356666666654

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=81.30  E-value=0.55  Score=33.41  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=20.8

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+.+    .|||.|+.
T Consensus        49 ~eLs~~~Gd~i~v~~~~~----~~Ww~g~~   74 (98)
T 1udl_A           49 DELSFSKGQLINVMNKDD----PDWWQGEI   74 (98)
T ss_dssp             TSCCCCTTCEEEECBCCS----SSEEBCBS
T ss_pred             CccCCcCCCEEEEEEecC----CCEEEEEE
Confidence            356789999999998744    48999973

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=81.06  E-value=0.25  Score=33.62  Aligned_cols=26  Identities=15%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|..||.|+|+.+.+    .|||.|+.
T Consensus        35 ~eLs~~~Gd~i~v~~~~~----~~Ww~~~~   60 (77)
T 1awj_A           35 QELALRCDEEYYLLDSSE----IHWWRVQD   60 (77)
T ss_dssp             TSCCBCSSSCCSCCCTTS----SSBCCCCC
T ss_pred             CCcCCCCCCEEEEEEecC----CCCEEEEE
Confidence            456789999999997653    48999975

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=80.98  E-value=1.3  Score=35.19  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ....|..||.|+|+.+.+    .|||.|+
T Consensus        26 ~eLs~~~Gd~i~vl~~~~----~gWw~g~   50 (193)
T 1ng2_A           26 SEMALSTGDVVEVVEKSE----SGWWFCQ   50 (193)
T ss_dssp             TCCCBCTTCEEEEEECCT----TSCCEEE
T ss_pred             CcCCCCCCCEEEEEEecC----CCeEEEE
Confidence            567899999999999743    6899998

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=80.65  E-value=1.6  Score=31.53  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=23.4

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .+....|..||.|||.-+..  +-.+||+++.
T Consensus        30 ~~~ELS~~kGd~vevle~~~--~~peW~lvr~   59 (82)
T 1u3o_A           30 HSSELSIQVGQTVELLERPS--ERPGWCLVRT   59 (82)
T ss_dssp             STTCCCBCTTCEEEESSCTT--SSTTEEEEEE
T ss_pred             CCCeeeEcCCCEEEEEecCC--CCCCEEEEEE
Confidence            34678899999999997543  3678999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d2f5ka1	83	Mortality factor 4-like protein 1, MRG15 {Human (H	97.72
d1wjqa_	107	Lethal(3)malignant brain tumor-like 3 protein, L3M	97.49
d1oz2a3	106	Lethal(3)malignant brain tumor-like protein {Human	97.46
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	97.28
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	97.16
d1oi1a2	104	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	97.15
d1oi1a1	103	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1oz2a2	108	Lethal(3)malignant brain tumor-like protein {Human	96.88
d1oz2a1	110	Lethal(3)malignant brain tumor-like protein {Human	96.81
d2buda1	88	Putative histone acetyltransferase MOF {Fruit fly	96.79
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.19
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	95.9
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	95.25
d1wjsa_	127	Lethal(3)malignant brain tumor-like 3 protein, L3M	95.13
d2nlua1	100	Hepatoma-derived growth factor, HDGF {Human (Homo	95.11
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	94.95
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1wjra_	127	Scm-like with four MBT domains protein 2, SFMBT2 (	94.68
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	94.65
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	94.54
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	94.52
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	94.48
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	94.35
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.29
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	94.2
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	94.2
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	94.05
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	93.99
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	93.91
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	93.9
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	93.65
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	93.62
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	93.43
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	93.32
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	93.31
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	93.26
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	93.19
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	93.15
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	93.12
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	92.89
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	92.87
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	92.72
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	92.71
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	92.58
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	92.39
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	92.37
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	92.35
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	92.25
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	92.14
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	92.07
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	91.96
d1h3za_	108	Hypothetical protein SPBC215.07c {Fission yeast (S	91.92
d2daqa1	97	Histone-lysine N-methyltransferase NSD3 {Human (Ho	91.76
d1khca_	137	DNA methyltransferase DNMT3B {Mouse (Mus musculus)	91.58
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	91.21
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	90.98
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	89.38
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	89.18
d2cpqa1	78	Fragile X mental retardation syndrome related prot	89.17
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	89.02
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	88.78
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	88.53
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	87.52
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	87.51
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	86.44
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	85.9
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	85.9
d1j4wa1	74	Far upstream binding element, FBP {Human (Homo sap	83.84
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	83.36
d1we8a_	104	Tudor and KH domain containing protein, Tdrkh {Mou	82.96

>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Mortality factor 4-like protein 1, MRG15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.6e-05  Score=54.52  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=48.9

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEe---cc-EEEEEEeccCCcceeeecCCCcccCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIK---GD-FHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK---Gd-f~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ...|.+|+.|-+|.      ...+|.|+|..++   |+ .|.|-|.||++.+.|.|+.+||+..|+
T Consensus         3 ~~~f~~ge~Vlc~~------~~~lYeAkil~~~~~~~~~~Y~VHy~GWn~~~DeWv~~~ril~~~~   62 (83)
T d2f5ka1           3 KPKFQEGERVLCFH------GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVD   62 (83)
T ss_dssp             SCSCCTTCEEEEES------SSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESSH
T ss_pred             CCccCCCCEEEEEE------CCeeEEeEEEEEEEcCCceEEEEEecccCCccccccChhhcccCCH
Confidence            46789999999985      4589999999885   44 899999999999999999999998874

>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=8.9e-05  Score=54.44  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeee--cCCCcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIV--PPERMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV--~~erLR~~n   97 (191)
                      -.|..|+.+||-   |...|.-+|.|+|..+.|+.+.|.|.|||..|..++  ...+|+|++
T Consensus        12 ~~F~vGmKLEav---D~~~~~~i~vAtV~~v~g~~l~v~~DG~~~~~d~w~~~~S~~I~PVG   70 (107)
T d1wjqa_          12 HGFQKKMKLEVV---DKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVG   70 (107)
T ss_dssp             SSCCSSCEEEEE---CTTCTTCEEEEEEEEECSSCEEEECSSSCGGGCEEECTTCSSCEETT
T ss_pred             ccCcCCCEEEEE---cCCCCeeEEEEEEEEEECCEEEEEECCCCCCCCEEEECCCCCEecCC
Confidence            469999999996   456688899999999999999999999999998885  456777765

>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00012  Score=53.39  Aligned_cols=57  Identities=9%  Similarity=0.137  Sum_probs=46.6

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      -.|.+|+.+||-.   ...|..+|.|+|..+.|....|.|.|||..|+.++..+  .|.|++
T Consensus        26 ~~F~~GmklEavd---~~~~~~i~vAtV~~v~g~~l~v~~DG~~~~~dfw~~~~S~~I~PvG   84 (106)
T d1oz2a3          26 HSFLVNMKLEAVD---RRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAG   84 (106)
T ss_dssp             CCCCTTCEEEEEC---SSSTTCEEEEEEEEECSSEEEEEETTBCGGGCEEEETTCTTEECTT
T ss_pred             cccccCCEEEEEc---CCCCceEEEEEEEEEECCEEEEEECCCCCCCCEEEECCCCCeeCCC
Confidence            3689999999964   45688999999999999999999999998887776544  455544

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00031  Score=45.85  Aligned_cols=55  Identities=11%  Similarity=0.053  Sum_probs=43.9

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEe--ccEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iK--Gdf~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ++.++||.+-+....|.    .|++|+|..+.  ++.+.|.|.+..  .+|.|+.+.|||++.
T Consensus         2 ~~wkvG~~C~A~~s~Dg----~wYRA~I~~v~~~~~~~~V~fvDYG--n~e~V~~~~l~~~~~   58 (59)
T d1mhna_           2 QQWKVGDKCSAIWSEDG----CIYPATIASIDFKRETCVVVYTGYG--NREEQNLSDLLSPIC   58 (59)
T ss_dssp             CCCCTTCEEEEECTTTS----CEEEEEEEEEETTTTEEEEEETTTT--EEEEEEGGGCBCTTC
T ss_pred             CcCCcCCEEEEEECCCC----CEEEEEEEEEcCCCCEEEEEEEeCC--CEEEEEHHHCcCCCC
Confidence            36789999999653333    49999999884  568999998664  589999999999864

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00086  Score=50.76  Aligned_cols=55  Identities=16%  Similarity=0.234  Sum_probs=45.5

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEe-----c-cEEEEEEeccCCcceeeecCCCcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIK-----G-DFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iK-----G-df~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ..|.+|+.|.|+-+  ++   .|++|+|..++     | .-|+|-|.||+..+.|+|+.+||+...
T Consensus        11 ~~~~vG~~~~v~~~--dg---~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r~DEWV~~~ri~~~~   71 (133)
T d1wgsa_          11 VTVEIGETYLCRRP--DS---TWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTK   71 (133)
T ss_dssp             CCCCTTSEEEEEET--TT---EEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCCTT
T ss_pred             ccEecCCEEEEEeC--CC---CEeEEEEEEEEecccCCCeEEEEEccCCccccceecCHHHccccc
Confidence            46899999999853  22   49999999986     2 258899999999999999999998643

>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0011  Score=47.99  Aligned_cols=58  Identities=12%  Similarity=0.124  Sum_probs=47.1

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      .-.|..|+.+||-   |...|...|.|+|..+.|..+.|.|.|+|..|.-++..+  .|.|++
T Consensus        30 ~~~F~~GmkLEav---D~~~~~~i~vAtV~~v~g~~l~v~~dg~~~~~dfw~~~~S~~I~PvG   89 (104)
T d1oi1a2          30 LNNFKVGMKLEAI---DKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAG   89 (104)
T ss_dssp             SCCCCTTCEEEEE---CTTSTTCEEEEEEEEEETTEEEEEETTSCSTTCEEEETTCTTEECTT
T ss_pred             cCCCCCCCEEEEE---CCCCCCeEEEEEEEEEECCEEEEEeCCCCCccCEEEECCCCCeecCc
Confidence            4579999999995   566688999999999999999999999998877666543  344443

>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00088  Score=48.37  Aligned_cols=57  Identities=11%  Similarity=0.000  Sum_probs=47.3

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      -.|..|+.+||-.   ...|...|.|+|..+.|....|.|.|+|..++-++..+  .|.|++
T Consensus        29 ~~f~~GmklEavd---~~~~~~~~vAtV~~v~g~~~~l~~dG~~~~~dfw~~~~S~~i~PvG   87 (103)
T d1oi1a1          29 NDFKVGMKLEARD---PRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVG   87 (103)
T ss_dssp             CCCCTTCEEEEEE---TTEEEEEEEEEEEEEETTEEEEEETTSCTTCCEEEETTCTTEECTT
T ss_pred             cCcccCCEEEeEc---CCCCCeEEEEEEEEeeCCEEEEEECCCCCcCCEEEECCCCCeecCC
Confidence            4699999999975   45589999999999999999999999998877776544  456654

>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0023  Score=46.45  Aligned_cols=58  Identities=12%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      ...|..|+.+||-   |..+|..=|.|+|..+.|..+.|.|-|+|..|+.++..+  .|.|++
T Consensus        29 ~~~F~~GmkLEav---d~~~~~~i~vAtV~~v~g~~~~l~~dg~~~~~d~w~~~~S~~i~PvG   88 (108)
T d1oz2a2          29 PLGFQVGMKLEAV---DRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVG   88 (108)
T ss_dssp             CTTCCTTCEEEEE---CTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEECTTCTTEECTT
T ss_pred             CCCCCCCCEEEEE---cCCCCeEEEEEEEEEEECCEEEEEECCCCCccCEEEECCCCCeecCc
Confidence            4579999999996   455677789999999999999999999999888877554  344443

>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.001  Score=48.38  Aligned_cols=58  Identities=12%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecCC--CcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE--RMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~e--rLR~~n   97 (191)
                      .-.|..|+.+||-.+   ..|...|.|+|..+.|....|.|.|++..|..++..+  .|.|++
T Consensus        32 ~~~f~~GmklEavd~---~~~~~i~vAtV~~v~g~~l~v~~dg~~~~~dfw~~~~S~~I~PvG   91 (110)
T d1oz2a1          32 KNGFKLGMKLEGIDP---QHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAG   91 (110)
T ss_dssp             CCCCCTTCEEEEEET---TEEEEEEEEEEEEEETTEEEEEETTSCGGGCEEEETTCTTEECTT
T ss_pred             CCcccCCCEEEEEcC---CCCCeEEEEEEEEEECCEEEEEECCCCCCCCEEEECCCCCeecCC
Confidence            467999999999854   5688999999999999999999999998887776543  445543

>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Putative histone acetyltransferase MOF
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.79  E-value=0.0006  Score=48.64  Aligned_cols=58  Identities=12%  Similarity=0.095  Sum_probs=43.2

Q ss_pred             CccCCCeE-EEEeecCCCCccceeeEEEEEEe------cc-EEEEEEeccCCcceeeecCCCcccCCC
Q psy985           39 GFVENQEV-EVFSKATEGESCGWWKVIVKMIK------GD-FHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        39 ~~~egdeV-EV~sran~~ep~gWW~a~V~~iK------Gd-f~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      .+.+|..+ +||.-.-..  -.|.+|+|..++      |+ -|.|-|.||+..+.|.|+.+|||..+.
T Consensus         6 ~~~v~~~~~kVy~~~r~D--g~~~~AkIi~~R~~~~~~g~~eYyVHY~g~n~r~DEWV~~~ri~~~~d   71 (88)
T d2buda1           6 KIDISENPDKIYFIRRED--GTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNAD   71 (88)
T ss_dssp             SCCSTTCTTSCEEEECTT--SCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHH
T ss_pred             ceeeccccCeEEEEECCC--CCEeeEEEEEEEecCCCCCceEEEEEecCccchhhhccCHhHhhhhhh
Confidence            34455554 565433211  279999999996      22 799999999999999999999997653

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0064  Score=39.23  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             ccCCCeEEEEeecCCCCccceeeEEEEEEe--ccEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           40 FVENQEVEVFSKATEGESCGWWKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        40 ~~egdeVEV~sran~~ep~gWW~a~V~~iK--Gdf~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      .++|+.+-+....+.    .|.+|+|..+.  |+.+.|.|.+..  .+|.|+.+.|||..+.
T Consensus         3 wkvG~~c~A~~~~D~----~wYRA~I~~i~~~~~~~~V~fvDYG--n~e~v~~~~lr~l~~e   58 (60)
T d2d9ta1           3 WKPGDECFALYWEDN----KFYRAEVEALHSSGMTAVVKFTDYG--NYEEVLLSNIKPVQTE   58 (60)
T ss_dssp             CCTTCEEEEECTTTC----CEEEEEEEEECSSSSEEEEEETTTT--EEEEEEGGGEEECCCC
T ss_pred             cCcCCEEEEEECCCC----CEEEEEEEEEcCCCCEEEEEEECCC--CEEEEcHHHcCcCCCC
Confidence            578999998653222    49999999987  558999998654  4899999999998653

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0078  Score=40.47  Aligned_cols=29  Identities=21%  Similarity=0.506  Sum_probs=24.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVKM   67 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~   67 (191)
                      +.+..|.+||.|.|+.+.++    |||.|++..
T Consensus        21 ~~eLs~~~Gd~i~Vl~~~~~----~Ww~g~~~~   49 (80)
T d1ue9a_          21 SEQLSLAPGQLILILKKNTS----GWWQGELQA   49 (80)
T ss_dssp             TTBCCCCTTCEEEEEEECSS----SEEEEEECS
T ss_pred             CCEeeEcCCCEEEEEEEeCC----CeEEEEEcc
Confidence            35789999999999987654    899999754

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.034  Score=38.22  Aligned_cols=56  Identities=14%  Similarity=0.223  Sum_probs=43.9

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEec-cEEEEEEeccCCcceeeecCCCcccCCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNTN   99 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG-df~vVey~~~d~~~teIV~~erLR~~n~n   99 (191)
                      ...+..|+-+-+.. . |+   .|.+|+|..+.+ +-+.|.|.  |-..++.|+...||+..+.
T Consensus        23 ~~~p~~G~~c~a~~-~-D~---~wyRa~V~~~~~~~~~~V~~v--DyG~~~~v~~~~l~~l~~~   79 (90)
T d2hqxa1          23 SYAPRRGEFCIAKF-V-DG---EWYRARVEKVESPAKIHVFYI--DYGNREVLPSTRLGTLSPA   79 (90)
T ss_dssp             TCCCCTTCEEEEEC-T-TS---CEEEEEEEEEEETTEEEEEET--TTCCEEEECGGGEECCCGG
T ss_pred             ccCCCCCCEEEEEE-c-CC---CEEEEEEEEeCCCCeEEEEEE--eCCCCEEEEHHHeeECCHH
Confidence            46678999998865 2 33   399999999875 47888887  5567999999999997643

>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.028  Score=41.75  Aligned_cols=57  Identities=12%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             CCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecC--CCcccCC
Q psy985           38 SGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPP--ERMRQKN   97 (191)
Q Consensus        38 ~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~--erLR~~n   97 (191)
                      -.|.+|+.+||-.+   ..|..=|.|+|..+.|..+.|.|-|||..|..++..  ..|+|++
T Consensus        12 ~~F~~GmKLEavd~---~~~~~i~vAtV~~v~g~~l~v~~DG~~~~~dfw~~~~S~~I~PvG   70 (127)
T d1wjsa_          12 NGFKVGMKLEGVDP---EHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVG   70 (127)
T ss_dssp             CSCCTTCEEEEEET---TEEEEEEEEEEEEEETTEEEEEETTSCGGGCEEEETTCSSCBCSS
T ss_pred             CCCccCCEEEEEcC---CCCceEEEEEEEEEECCEEEEEeCCCCCCCCEEEECCCCCeecCc
Confidence            46999999999754   457788999999999999999999999887666554  4566655

>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Hepatoma-derived growth factor, HDGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.016  Score=40.89  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=41.4

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEe-------ccEEEEEEeccCCcceeeecCCCcccC
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIK-------GDFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iK-------Gdf~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      .....+|.+||-|-+-.+.     ..||||+|....       +..|.|.|.|. .+|. .|..++|.+-
T Consensus         4 ~~~~~~f~~GdlVWaK~~g-----ypwWPa~V~~~~~~~~~~~~~~~~V~Ffg~-~~~~-wv~~~~l~~f   66 (100)
T d2nlua1           4 SNRQKEYKCGDLVFAKMKG-----YPHWPARIDEMPEAAVKSTANKYQVFFFGT-HETA-FLGPKDLFPY   66 (100)
T ss_dssp             CCCCCCCSTTCEEEEEETT-----EEEEEEEEECCTTSSCSCCCSCEEEEETTT-TEEE-EECGGGEECH
T ss_pred             ccCCCcCCcCCEEEEecCC-----CCCCCEEEecchhhcccCCCCEEEEEEcCC-CCEE-EEcHHHccCh
Confidence            3457899999999998844     569999998643       34688899875 3554 6777777653

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.95  E-value=0.012  Score=39.18  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|.+||.|+|+....+   .|||.|++.
T Consensus        25 ~eLsf~~GD~i~Vl~~~~~---~gWw~G~~~   52 (69)
T d1gcqc_          25 PFLRLNPGDIVELTKAEAE---HNWWEGRNT   52 (69)
T ss_dssp             CBCCBCTTCEEEEEECCTT---CSEEEEEET
T ss_pred             CEeeEcCCCEEEEEEEecC---CCEEEEEEC
Confidence            4688999999999965433   489999873

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.01  Score=38.67  Aligned_cols=30  Identities=13%  Similarity=0.332  Sum_probs=24.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|.+||.|+|..+.++. ..|||.|+.
T Consensus        18 ~~ELs~~~Gd~i~vl~~~~~~-~~gW~~g~~   47 (63)
T d1ycsb2          18 DDELPMKEGDCMTIIHREDED-EIEWWWARL   47 (63)
T ss_dssp             TTBCCBCSSCEEEECCCCTTS-CSSEEEEEE
T ss_pred             CCCcCCCCCCEEEEEEecCCC-CCCEEEEEE
Confidence            357899999999999876653 359999975

>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.019  Score=42.57  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=43.0

Q ss_pred             CccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCC--cceeee--cCCCcccCC
Q psy985           39 GFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQS--TFTEIV--PPERMRQKN   97 (191)
Q Consensus        39 ~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~--~~teIV--~~erLR~~n   97 (191)
                      .|.+|+.+||--   ..+|..=|.|+|.++.|..+.|.|.|+|.  .|.-++  ....|.|++
T Consensus        11 ~f~vGmkLEavd---p~~~~~i~vAtV~~v~g~~l~v~~DG~~~~~~~dfw~~~~S~~I~PvG   70 (127)
T d1wjra_          11 LITVGSLIELQD---SQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVG   70 (127)
T ss_dssp             HCCTTCEEEEEC---SSCSSCEEEEECCCEETTEEEECBTTCSSCCSSCEEEETTCSSCBCTT
T ss_pred             ccCCCCEEEEEc---CCCCCeEEEEEEEEEECCEEEEEEecCCCCCCCCEEEECCCCCeeeCc
Confidence            589999999964   45577889999999999999999999964  233333  445566664

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.015  Score=37.29  Aligned_cols=27  Identities=15%  Similarity=0.403  Sum_probs=22.6

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|.+||.|+|+.+.++    |||.|+.
T Consensus        16 ~~eLsf~~Gd~i~v~~~~~~----~W~~g~~   42 (58)
T d1uj0a_          16 DNELTFKHGELITVLDDSDA----NWWQGEN   42 (58)
T ss_dssp             TTBCCBCTTCEEEEEECCSS----SEEEEEE
T ss_pred             cCCcCCCCCCEEEEeEEeCC----CEEEEEE
Confidence            35789999999999987654    8999985

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0099  Score=37.54  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=21.9

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      +....|.+||.|+|..+.++    |||.|+
T Consensus        14 ~~eLs~~~Gd~v~vl~~~~~----gWw~g~   39 (53)
T d1wlpb1          14 GDEVSLLEGEAVEVIHKLLD----GWWVIR   39 (53)
T ss_dssp             SSBCCBCTTCEEEEEECCTT----SSEEEE
T ss_pred             CCEecCCCCCEEEEEeecCC----ceEEEE
Confidence            35789999999999987555    799997

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.022  Score=38.87  Aligned_cols=56  Identities=9%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEEecc-EEEEEEeccCCcceeeecCCCcccCCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd-f~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ...+.+|+-+-++...++    -|++|+|..+.++ -+.|.|.  |--.++.|+.+.||+..+
T Consensus        23 ~~~~~~G~~~~a~~~~d~----~wyRa~V~~~~~~~~~~V~~v--DyG~~~~v~~~~l~~l~~   79 (97)
T d2diqa1          23 DLTVHVGDIVAAPLPTNG----SWYRARVLGTLENGNLDLYFV--DFGDNGDCPLKDLRALRS   79 (97)
T ss_dssp             CCCCCTTCEEEECCTTTC----SCEEEEECCCCSSSCEEEEET--TTCCEEEECGGGCEECCH
T ss_pred             cCCCCCCCEEEEEECCCC----eEEEEEEEEECCCCEEEEEEE--eeCCEEEEeHHHhhccCH
Confidence            356889999998653333    3999999999766 7899998  556789999999998754

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=94.48  E-value=0.018  Score=36.84  Aligned_cols=28  Identities=14%  Similarity=0.421  Sum_probs=23.3

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      +....|..||.|+|..+.+    .|||.|++.
T Consensus        16 ~~eLsf~~Gd~i~v~~~~~----~~W~~g~~~   43 (58)
T d1sema_          16 SGELAFKRGDVITLINKDD----PNWWEGQLN   43 (58)
T ss_dssp             TTBCCBCTTCEEEEEECSS----SSEEEEEET
T ss_pred             cCCcCCCCCCEEEEeEEcC----CCEEEEEEC
Confidence            3578899999999999875    489999863

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0094  Score=41.54  Aligned_cols=43  Identities=21%  Similarity=0.490  Sum_probs=29.4

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeecC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPP   90 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~~   90 (191)
                      ....|.+||.|+|+.+.++    |||.|+..-.+|=|        -++|-+|++.
T Consensus        49 ~ELsf~~Gd~i~Vl~~~~~----gWw~g~~~g~~G~~--------P~nyVe~~~~   91 (98)
T d1udla_          49 DELSFSKGQLINVMNKDDP----DWWQGEINGVTGLF--------PSNYVKMTTD   91 (98)
T ss_dssp             TSCCCCTTCEEEECBCCSS----SEEBCBSSSCBCCE--------ETTSEEECCC
T ss_pred             CEeeEcCCCEEEEeEecCC----CeEEEEECCeEEEE--------chHHEEECCC
Confidence            4578899999999977653    89999753222222        4567777664

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.024  Score=39.14  Aligned_cols=27  Identities=19%  Similarity=0.378  Sum_probs=23.3

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|..||.++|+.+.++    +||.|++.
T Consensus        21 ~eLsf~kGdil~V~~~~d~----~WW~~~~~   47 (96)
T d1kjwa1          21 QALSFRFGDVLHVIDAGDE----EWWQARRV   47 (96)
T ss_dssp             SBCCBCTTCEEEEEECCSS----SEEEEEEC
T ss_pred             ccceEcCCCEEEEeeeccC----ceEEEEEc
Confidence            4689999999999998655    89999874

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0041  Score=43.10  Aligned_cols=54  Identities=17%  Similarity=0.285  Sum_probs=37.9

Q ss_pred             CCCCCccCCCeEEEEeecCCC-----------CccceeeEEEEE--EeccEEEEEEeccCCcceeeecCCCcccC
Q psy985           35 TINSGFVENQEVEVFSKATEG-----------ESCGWWKVIVKM--IKGDFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~-----------ep~gWW~a~V~~--iKGdf~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      +.+..|..||.|.|..+.+..           .--|||.|+..+  -+|=|        .++|.|++...++.|+
T Consensus        17 ~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~F--------P~nYVe~i~~~~~~~P   83 (83)
T d1phta_          17 EEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF--------PGTYVEYIGRKKISPP   83 (83)
T ss_dssp             TTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEE--------EGGGEEEEEEEECCCC
T ss_pred             CCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeE--------ehhhEEEcCCcCCCCC
Confidence            347899999999999865311           125899998532  34433        6779999887776553

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.20  E-value=0.022  Score=36.02  Aligned_cols=28  Identities=18%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .+....|.+||.|.|..+.++    |||.|++
T Consensus        13 ~~~eLs~~~Gd~v~v~~~~~~----~Ww~g~~   40 (55)
T d1u06a1          13 SPREVTMKKGDILTLLNSTNK----DWWKVEV   40 (55)
T ss_dssp             STTBCCBCTTCEEEEEECCSS----SEEEEEE
T ss_pred             CcCCccCCCCCEEEEeEEcCC----CEEEEEE
Confidence            335788999999999987644    8999985

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.05  E-value=0.027  Score=40.00  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=25.2

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEec
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKG   70 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKG   70 (191)
                      ....|..||.++|..+.|+    +||.|++..-.|
T Consensus        43 ~~LsF~~GDii~v~~~~d~----~WW~gr~~~~~g   73 (96)
T d1t0ha_          43 MAISFEAKDFLHVKEKFNN----DWWIGRLVKEGC   73 (96)
T ss_dssp             CBCCBCTTCEEEEEEECSS----SEEEEEESSTTC
T ss_pred             ccccCCCCCEEEEeeeeCC----CceEEEEcCCCC
Confidence            4578999999999999886    699999854333

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.018  Score=38.92  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             CCCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEecc
Q psy985           33 RETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD   71 (191)
Q Consensus        33 ~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd   71 (191)
                      ..+....|.+||.|+|+.+.++..-.|||.|+.   +|.
T Consensus        25 ~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~---~g~   60 (79)
T d1uhca_          25 RNPNELSVSANQKLKILEFKDVTGNTEWWLAEV---NGK   60 (79)
T ss_dssp             CSSSBCCBCTTCEEEEEESCCTTSCTTEEEEES---SSC
T ss_pred             CCCCCccCCCCCEEEEEEeecCCCCCCEEEEEE---CCC
Confidence            334578999999999999877777899999973   555

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.91  E-value=0.029  Score=41.80  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=26.5

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEEEEecc
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD   71 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd   71 (191)
                      +....|..||.++|+++.|+    +||.|+..--.|.
T Consensus        44 ~~~LsF~kGDii~V~~~~d~----~WW~gr~~~~~g~   76 (145)
T d1vyva1          44 SSAVSFDAKDFLHIKEKYNN----DWWIGRLVKEGCE   76 (145)
T ss_dssp             TCBCCBCTTCEEEEEEEEET----TEEEEEESSTTCC
T ss_pred             cccccCcCCCEEEEeeccCC----CcEEEEEcCCCCc
Confidence            35688999999999999876    8999987543454

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.053  Score=37.56  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=26.6

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +.+..|.+||.|+|+.+.+...-.|||+++.
T Consensus        31 ~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~   61 (92)
T d1ug1a_          31 DLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN   61 (92)
T ss_dssp             SSCCCCCTTCEEEEEESCCTTSCSSEEEEEC
T ss_pred             CCeEEEecccEEEEEEcccccccCCceEEEe
Confidence            3578999999999999988777789999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.65  E-value=0.052  Score=35.88  Aligned_cols=28  Identities=11%  Similarity=0.043  Sum_probs=23.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      +....|.+||.|+|+.+.++    +||.++..
T Consensus        21 ~~eLs~~~Gd~i~vl~~~~~----~Ww~v~~~   48 (74)
T d1wfwa_          21 ENEICVSQGEVVQVLAVNQQ----NMCLVYQP   48 (74)
T ss_dssp             SSCCCBCTTCEEEEEEECTT----SEEEEEEC
T ss_pred             CCCccCccCCEEEEEEEcCC----CCEEEEeC
Confidence            45799999999999987654    89998753

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.031  Score=35.56  Aligned_cols=27  Identities=26%  Similarity=0.569  Sum_probs=22.3

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|.|..+.++    |||.|++
T Consensus        15 ~~eLs~~~Gd~i~v~~~~~~----~Ww~g~~   41 (57)
T d1utia_          15 EDELGFRSGEVVEVLDSSNP----SWWTGRL   41 (57)
T ss_dssp             TTBCCBCTTCEEEEEECCSS----SEEEEEE
T ss_pred             cCCcCCCCCCEEEEeEEcCC----CEEEEEE
Confidence            35788999999999986653    8999986

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.045  Score=36.08  Aligned_cols=34  Identities=24%  Similarity=0.511  Sum_probs=25.8

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEecc
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD   71 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGd   71 (191)
                      .+.+..|.+||.|+|+.+.++  ..|||.++.  ..|.
T Consensus        19 ~~~eLs~~~Gd~i~vl~~~~~--~~~Ww~~~~--~~G~   52 (71)
T d1u5sa1          19 TEEELNFEKGETMEVIEKPEN--DPEWWKCKN--ARGQ   52 (71)
T ss_dssp             SSSBCCCCSSCCEEEEECCCT--TTCEEEEEE--TTTE
T ss_pred             CCCEeeECCCCEEEEEEcccC--CCCeEEEEE--CCCC
Confidence            345789999999999987665  468999863  3454

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.32  E-value=0.046  Score=34.75  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|.+||.|+|+.+.+..  -|||.|+.
T Consensus        15 ~~ELs~~~Gd~v~vl~~~~~~--~~W~~~~~   43 (58)
T d1oota_          15 SGDLPFRKGDVITILKKSDSQ--NDWWTGRV   43 (58)
T ss_dssp             TTBCCBCTTCEEEEEECCSCT--TSEEEEEE
T ss_pred             CCCccCCCCCEEEEEEeecCC--CCEEEEEE
Confidence            356899999999999877653  47999975

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.036  Score=39.44  Aligned_cols=26  Identities=31%  Similarity=0.679  Sum_probs=22.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|.+||.|+|+.+.++    |||.|+.
T Consensus        29 dELs~~~Gd~i~Vl~~~~~----gWw~g~~   54 (118)
T d1ng2a2          29 DEVSLLEGEAVEVIHKLLD----GWWVIRK   54 (118)
T ss_dssp             TBCCBCTTCEEEEEECCTT----SEEEEEE
T ss_pred             CEecCCCCCEEEEeEecCC----CeEEEEE
Confidence            4689999999999987654    8999975

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.048  Score=34.54  Aligned_cols=28  Identities=25%  Similarity=0.525  Sum_probs=22.8

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .+....|..||.|+|+.+.+    -|||.|+.
T Consensus        15 ~~~eLs~~~Gd~i~vl~~~~----~~Ww~~~~   42 (58)
T d1ng2a1          15 SGSEMALSTGDVVEVVEKSE----SGWWFCQM   42 (58)
T ss_dssp             STTCCCBCTTCEEEEEECCT----TSCCEEEE
T ss_pred             CCCCcCCCCCCEEEEEEecC----CCeEEEEE
Confidence            34578999999999998765    46999985

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.056  Score=37.92  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=39.0

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecCCCcccCCCCCCC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPPERMRQKNTNPPI  102 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~erLR~~n~n~pi  102 (191)
                      ....|.+||.|+|+.+.++.   |||.+...  .|.      .|+ .++|-+.+.....|...+..|.
T Consensus        38 ~ELsf~~Gd~i~v~~~~~~~---gW~~~~~~--~G~------~G~~P~nyve~~~~~~~~~~~~s~pS   94 (96)
T d1wiea_          38 AELPLTAGKYLYVYGDMDED---GFYEGELL--DGQ------RGLVPSNFVDFVQDNESRLASTSGPS   94 (96)
T ss_dssp             TBCCCCTTCEEEEESSCCSS---SCCEEEET--TCC------BCBCCTTSEECCCSCCCCSCCCSCCC
T ss_pred             cEeeEcCCCEEEEEEeeCCC---ceEEEEeC--CCC------EEEEehHHeEECCCcccccccCCCCC
Confidence            46899999999999876543   89887553  232      133 6678888877777766655554

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.15  E-value=0.064  Score=33.86  Aligned_cols=28  Identities=21%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      +.+..|.+||.|.|..+.++    |||.|++.
T Consensus        14 ~~eLs~~~Gd~i~v~~~~~~----~Ww~~~~~   41 (58)
T d1jo8a_          14 DNELTFVENDKIINIEFVDD----DWWLGELE   41 (58)
T ss_dssp             TTBCCBCTTCEEEEEECCSS----SEEEEEET
T ss_pred             cCCcCCCCCCEEEEEEEcCC----CEEEEEEC
Confidence            35789999999999986654    89999963

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.029  Score=36.27  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=22.8

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|+|+.+.++    |||.|+.
T Consensus        19 ~~eLsf~~Gd~i~vl~~~~~----~Ww~g~~   45 (62)
T d1k4us_          19 PEDLEFQEGDIILVLSKVNE----EWLEGES   45 (62)
T ss_dssp             SSBCCBCSSCEEEEEEESSS----SCEEEEC
T ss_pred             cCCcCCCCCCEEEEeEEcCC----CEEEEEE
Confidence            35789999999999988864    7999976

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.89  E-value=0.061  Score=34.99  Aligned_cols=28  Identities=21%  Similarity=0.443  Sum_probs=22.5

Q ss_pred             CCCCCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           33 RETINSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        33 ~~~~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      ..+....|.+||.|.|+.+.++    +||.|+
T Consensus        14 ~~~~eLs~~~Gd~i~v~~~~~~----~Ww~~~   41 (67)
T d1gl5a_          14 TEAHDLRLERGQEYIILEKNDL----HWWRAR   41 (67)
T ss_dssp             SSSSBCCBCTTCEEEEEECSSS----SEEEEE
T ss_pred             CCcCCcCCCCCCEEEEEEecCC----CcEEEE
Confidence            3445789999999999987543    799986

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.036  Score=37.04  Aligned_cols=27  Identities=15%  Similarity=0.334  Sum_probs=22.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|.+||.|.|+.+.+    .+||.|+.
T Consensus        24 ~~eLs~~~Gd~i~v~~~~~----~~W~~g~~   50 (76)
T d1ujya_          24 EDELSVCKGDIIYVTRVEE----GGWWEGTL   50 (76)
T ss_dssp             TTSCCBCSSCCEEESSCCS----SSCEEEEE
T ss_pred             CCCccCCCCCEEEEeEEcC----CCEEEEEE
Confidence            3578999999999987654    48999975

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.052  Score=36.13  Aligned_cols=41  Identities=24%  Similarity=0.571  Sum_probs=27.9

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecC
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPP   90 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~   90 (191)
                      ....|.+||.|+|+.+. +    +||.+++   .|..      |+ .++|-++++.
T Consensus        25 ~ELs~~~Gd~i~vl~~~-~----~ww~g~~---~g~~------G~fP~~yve~i~~   66 (74)
T d1j3ta_          25 NHLNFSKHDIITVLEQQ-E----NWWFGEV---HGGR------GWFPKSYVKIIPG   66 (74)
T ss_dssp             TBCCBCTTCEEEEEEEC-S----SEEEEES---TTCC------CEEEGGGEEECCC
T ss_pred             CEecCCCCCEEEEEEcc-C----CeEEEEE---CCcE------EEEchhhEEECCC
Confidence            47899999999999863 2    7998864   4541      22 3456666543

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.052  Score=36.90  Aligned_cols=45  Identities=22%  Similarity=0.408  Sum_probs=31.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEecc-CCcceeeecC
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGC-QSTFTEIVPP   90 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~-d~~~teIV~~   90 (191)
                      +....|.+||.|+|+.+.++.  -+||.++.   .|..      |+ -++|-++++.
T Consensus        19 ~~ELs~~~Gd~v~Vl~~~~~~--~~w~~~~~---~g~~------G~~P~~Yve~~~~   64 (93)
T d1uffa_          19 HDEMSFNSGDIIQVDEKTVGE--PGWLYGSF---QGNF------GWFPCNYVEKMPS   64 (93)
T ss_dssp             SSCCCBCTTCEEEECSSCCCS--SSEEEEEE---TTEE------EEEETTTEEECCS
T ss_pred             CCCccCcCCCEEEEEEeccCC--CCEEEEEe---CCcE------EEEchHHEEECCC
Confidence            357899999999999766542  67998864   4542      22 4567776643

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.075  Score=34.65  Aligned_cols=30  Identities=23%  Similarity=0.605  Sum_probs=24.6

Q ss_pred             CCCCccCCCeEEEEeecCC-CCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATE-GESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~-~ep~gWW~a~V   65 (191)
                      ....|..||.|.|..+.+. ...-|||.|+.
T Consensus        21 ~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~   51 (67)
T d2v1ra1          21 MEVALKKGDLMAILSKKDPLGRDSDWWKVRT   51 (67)
T ss_dssp             TBCCBCTTCEEEEEEEECTTSCEEEEEEEEC
T ss_pred             CEeCCCCCCEEEEEEeecCCCcCCCeEEEEe
Confidence            3689999999999998874 44679999963

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.39  E-value=0.067  Score=36.20  Aligned_cols=31  Identities=13%  Similarity=0.131  Sum_probs=25.9

Q ss_pred             CCCCccCCCeEEEEeecCC-CCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATE-GESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~-~ep~gWW~a~V~   66 (191)
                      ....|..||.|.|+++.+. ...-|||.|.+.
T Consensus        27 ~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~   58 (83)
T d1bb9a_          27 DELQLKAGDVVLVIPFQNPEEQDEGWLMGVKE   58 (83)
T ss_dssp             TBCCBCTTCEEEEECCSCGGGCCTTEEEEEEH
T ss_pred             CEecCcCCCEEEEEEccCCCcccCCEeEEEec
Confidence            4788999999999999874 456799999874

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=92.37  E-value=0.055  Score=33.79  Aligned_cols=26  Identities=15%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      +....|.+||.++|+.+.+    .+||.++
T Consensus        12 ~~eLs~~~Gd~~~vl~~~~----~~Ww~~~   37 (53)
T d2rn8a1          12 PQELALRCDEEYYLLDSSE----IHWWRVQ   37 (53)
T ss_dssp             TTBCCCCTTCEEEECCCSC----SSCEEEE
T ss_pred             CCeeeECCCCEEEEeEEcC----CCeEEEE
Confidence            3578999999999997665    4799986

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.069  Score=33.65  Aligned_cols=27  Identities=22%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|.|..+.++    |||.|++
T Consensus        15 ~~eLs~~~Gd~i~v~~~~~~----~W~~g~~   41 (56)
T d1gcqa_          15 DGELGFRRGDFIHVMDNSDP----NWWKGAC   41 (56)
T ss_dssp             TTBCCBCTTCEEEEEECCSS----SEEEEEE
T ss_pred             cCCcCCCCCCEEEEEEecCC----CEEEEEE
Confidence            35788999999999987654    8999976

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.25  E-value=0.079  Score=33.49  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|.+||.|.|..+.++    |||.|+.
T Consensus        15 ~~eLs~~~Gd~i~v~~~~~~----~Ww~~~~   41 (57)
T d1ckaa_          15 EEDLPFKKGDILRIRDKPEE----QWWNAED   41 (57)
T ss_dssp             TTBCCBCTTCEEEEEECSSS----SEEEEEC
T ss_pred             cCCcCCCCCCEEEEEEEcCC----CeEEEEE
Confidence            34678999999999987653    8999974

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.066  Score=38.12  Aligned_cols=35  Identities=23%  Similarity=0.135  Sum_probs=26.5

Q ss_pred             CCCCCCCCccCCCeEEEEeecCCCCccceeeEEEEE
Q psy985           32 PRETINSGFVENQEVEVFSKATEGESCGWWKVIVKM   67 (191)
Q Consensus        32 P~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~   67 (191)
                      |.......|..||.|.|+++..+. -.+||.|.+.-
T Consensus        32 ~~~~~eL~f~~Gd~i~Vl~k~~~~-~~~WW~g~~~g   66 (106)
T d1i1ja_          32 APDCRFLTIHRGQVVYVFSKLKGR-GRLFWGGSVQG   66 (106)
T ss_dssp             CSSTTBCCBCTTCEEEEEEEECGG-GTTEEEEEEBC
T ss_pred             CCCCCCccCCCCCEEEEEEecCCC-CcceEEEEecC
Confidence            334457899999999999986432 26799998754

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.099  Score=32.63  Aligned_cols=28  Identities=11%  Similarity=0.483  Sum_probs=22.1

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .+.+..|.+||.|.|+.+.++    +||.++.
T Consensus        13 ~~~eLs~~~Gd~i~v~~~~~~----~Ww~~~~   40 (57)
T d1efna_          13 TEDDLSFHKGEKFQILNSSEG----DWWEARS   40 (57)
T ss_dssp             STTBCCBCTTCEEEEEECSSC----SEEEEEE
T ss_pred             CcCCcCCCCCCEEEEEEecCC----CCEEEEE
Confidence            345789999999999986554    7998864

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.0089  Score=39.76  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=31.0

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeec
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVP   89 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~   89 (191)
                      .+....|.+||.|+|+.+.++    |||.|++..-+|.++       .++|.+++.
T Consensus        19 ~~~eLsf~~Gd~i~v~~~~~~----~Ww~g~~~~~~~G~f-------P~~yv~~~~   63 (71)
T d2hspa_          19 REDELTFIKSAIIQNVEKQEG----GWWRGDYGGKKQLWF-------PSNYVEEMV   63 (71)
T ss_dssp             SSSSCCCCTTCEEBSCCCBTT----TEECCBCSSCCSCCE-------ETTTCCSCS
T ss_pred             CcCCccCCCCCEEEEEEecCC----CEEEEEECCeEEEEE-------chHHeEEcC
Confidence            335789999999999986653    899998654444221       455666553

>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Hypothetical protein SPBC215.07c
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.92  E-value=0.093  Score=36.84  Aligned_cols=54  Identities=13%  Similarity=0.253  Sum_probs=40.5

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEE--------------EeccEEEEEEeccCCcceeeecCCCcccCC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKM--------------IKGDFHVVEYLGCQSTFTEIVPPERMRQKN   97 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~--------------iKGdf~vVey~~~d~~~teIV~~erLR~~n   97 (191)
                      ..+|.+||-|-+-.+.     ..||||+|..              .++..|.|.|.|. .+| ..|..++|.|-.
T Consensus         3 ~~~f~~GdlVWaK~~g-----yPwWPa~I~~~~~~~~~~~~~~~~~~~~~~~V~FFg~-~~~-aWv~~~~l~pf~   70 (108)
T d1h3za_           3 RVNYKPGMRVLTKMSG-----FPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPN-KEY-LWTGSDSLTPLT   70 (108)
T ss_dssp             CCCCCTTCEEEEEETT-----EEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTT-TCC-EEEEGGGEEECC
T ss_pred             CCcCCCCCEEEEEcCC-----CCCCCEEEeChhhCCHHHHhccccCCCCeEEEEEeCC-CCE-EEEcHHHCcCCC
Confidence            5688999999998854     4699999952              2334799999975 455 567788887753

>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Histone-lysine N-methyltransferase NSD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.091  Score=36.07  Aligned_cols=53  Identities=17%  Similarity=0.092  Sum_probs=37.9

Q ss_pred             CccCCCeEEEEeecCCCCccceeeEEEEE------------EeccEEEEEEeccCCcceeeecCCCcccCCC
Q psy985           39 GFVENQEVEVFSKATEGESCGWWKVIVKM------------IKGDFHVVEYLGCQSTFTEIVPPERMRQKNT   98 (191)
Q Consensus        39 ~~~egdeVEV~sran~~ep~gWW~a~V~~------------iKGdf~vVey~~~d~~~teIV~~erLR~~n~   98 (191)
                      ++..||-|-+-.+.-     .||||+|..            -+...|.|.|.|. .+| -.|+..+|.|-..
T Consensus         1 k~~~GdlVWaK~~g~-----pwWPa~V~~~~~~~~~~~~~~~~~~~~~V~FFg~-~~~-awv~~~~l~~f~e   65 (97)
T d2daqa1           1 KLHYKQIVWVKLGNY-----RWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGS-HDY-YWVHQGRVFPYVE   65 (97)
T ss_dssp             SCCSSEEEEEECSSS-----CEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTT-TEE-EEECSSSSEECCS
T ss_pred             CCcCCCEEEEEcCCc-----CCCceEEcCHHHhhhHhhhcCCCCCeEEEEEccC-CCE-EEECHHHCcCchh
Confidence            367899998876433     399999942            1223688999986 456 5889999998653

>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: DNA methyltransferase DNMT3B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.58  E-value=0.1  Score=38.78  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             CCCccCCCeEEEEeecCCCCccceeeEEEEEE--------eccEEEEEEeccCCcceeeecCCCcccC
Q psy985           37 NSGFVENQEVEVFSKATEGESCGWWKVIVKMI--------KGDFHVVEYLGCQSTFTEIVPPERMRQK   96 (191)
Q Consensus        37 ~~~~~egdeVEV~sran~~ep~gWW~a~V~~i--------KGdf~vVey~~~d~~~teIV~~erLR~~   96 (191)
                      .++|.+||-|-+-.+.     ..||||+|...        ....+.|.|-|.. +| -.|..++|.|-
T Consensus         6 g~~f~~GdlVWaK~~g-----~pwWPg~V~~~~~~~~~~~~~~~~~V~fFGd~-~~-~wv~~~~L~pf   66 (137)
T d1khca_           6 DKEFGIGDLVWGKIKG-----FSWWPAMVVSWKATSKRQAMPGMRWVQWFGDG-KF-SEISADKLVAL   66 (137)
T ss_dssp             SSSCCTTCEEEEEETT-----TEEEEEEEECGGGTTSCCCCTTEEEEEETTTC-CE-EEEEGGGCEET
T ss_pred             CCcCccCCEEEEecCC-----CCCCCeEEcChhhhccccCCCCcEEEEEecCC-CE-EEecHHHCccc
Confidence            4679999999998843     56999999642        2347889998764 45 56777888774

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.091  Score=33.71  Aligned_cols=29  Identities=10%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      .+.+..|.+||.+.|+.+.+    .+||.|+..
T Consensus        15 ~~~eLs~~~Gd~i~v~~~~~----~~Ww~~~~~   43 (64)
T d1fmka1          15 TETDLSFKKGERLQIVNNTE----GDWWLAHSL   43 (64)
T ss_dssp             SSSBCCBCTTCEEEESCCCS----SSEEEEEET
T ss_pred             CcCCcCCCCCCEEEEEEEcC----CCcEEEEEC
Confidence            34578999999999987654    379999753

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.98  E-value=0.088  Score=33.23  Aligned_cols=28  Identities=7%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +....|..||.|+|..+.++   -+||.|+.
T Consensus        14 ~~eLs~~~Gd~i~vl~~~~~---~~W~~~~~   41 (57)
T d1opka1          14 DNTLSITKGEKLRVLGYNHN---GEWCEAQT   41 (57)
T ss_dssp             TTBCCBCTTCEEEEEEECTT---SSEEEEEC
T ss_pred             cCCcCCCCCCEEEEeEecCC---CCEEEEEE
Confidence            35789999999999988665   25887764

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.22  Score=32.49  Aligned_cols=27  Identities=11%  Similarity=0.329  Sum_probs=22.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|.+||.|.|+.+.++   .+||.++.
T Consensus        21 ~ELs~~~Gd~i~vl~~~~~---~~W~~~~~   47 (71)
T d1k9aa1          21 QDLPFCKGDVLTIVAVTKD---PNWYKAKN   47 (71)
T ss_dssp             SBCCBCTTCEEEEEEECSS---TTEEEEEC
T ss_pred             CCccCCCCCEEEEeEeccC---CCEEEEEe
Confidence            5788999999999987543   48999875

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.079  Score=33.64  Aligned_cols=28  Identities=14%  Similarity=0.233  Sum_probs=22.5

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      +.+..|.+||.|+|..+.+    .|||.|++.
T Consensus        17 ~~eLs~~~Gd~i~v~~~~~----~~W~~~~~~   44 (60)
T d1arka_          17 ADEVSFKDGDAIINVQAID----EGWMYGTVQ   44 (60)
T ss_dssp             SSBCCCCTTCEECCSEECS----SSEEEEECT
T ss_pred             CCCcCCCCCCEEEEEEEcC----CCEEEEEEC
Confidence            3578899999999998654    479999753

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Fragile X mental retardation syndrome related protein 1, FXR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.54  Score=31.35  Aligned_cols=60  Identities=13%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             eEEeecCChhHHHHHHhhhc--hHHHHHhhhccEEEEcCCCCeeEEEeCchhhHhhhhhhhh
Q psy985          108 HKFDIEVPLDVQEFAKMEGA--HKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKD  167 (191)
Q Consensus       108 ~k~~i~VPedLre~~~~~~~--h~dF~kaiga~~v~y~pe~~~Lvvls~~e~~~kRA~mL~d  167 (191)
                      +..+|.||.++.-..==.+.  -++-+...||-.+.-+.+++.+.|.+.++.++++|.-+.+
T Consensus         8 ~t~~i~Ip~~~ig~vIG~gG~~I~~I~~~tGa~i~i~~~~~g~v~I~g~~~eav~~A~~~Ie   69 (78)
T d2cpqa1           8 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLE   69 (78)
T ss_dssp             EEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHS
T ss_pred             ceEEEEECHHHHHHHcCCChHHHHHHHHhcCcEEEEecCCCceEEEEECCHHHHHHHHHHHH
Confidence            47789999999988655433  3477777788766667778888888888999999976654

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.02  E-value=0.17  Score=33.22  Aligned_cols=28  Identities=11%  Similarity=0.173  Sum_probs=21.5

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIVK   66 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V~   66 (191)
                      ....|.+||.|+|..+.++   -|||.|+..
T Consensus        23 deLsf~~Gd~i~vl~~~~~---~gW~~g~~~   50 (72)
T d1spka_          23 TLLSFAQGDVLTLLIPEEK---DGWLYGEHD   50 (72)
T ss_dssp             SBCCBCTTCEEEECCSSCB---TTEEEEEET
T ss_pred             CEeeEcCCCEEEEEEeecC---CCeEEEEEC
Confidence            3588999999999865443   489999763

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.061  Score=35.54  Aligned_cols=27  Identities=15%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             CCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           36 INSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        36 ~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ....|.+||.|.|..+.++   -|||.++.
T Consensus        25 ~eLs~~~Gd~i~v~~~~~~---~~W~~g~~   51 (72)
T d1ugva_          25 SELSFTAGTVFDNVHPSQE---PGWLEGTL   51 (72)
T ss_dssp             SBCCBCTTCEEBSCCBCSS---TTEEEEES
T ss_pred             CEecCCCCCEEEEeeccCC---CCEEEEEe
Confidence            4688999999999776543   47999875

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.15  Score=33.47  Aligned_cols=28  Identities=29%  Similarity=0.504  Sum_probs=21.6

Q ss_pred             CCCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           33 RETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        33 ~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      ..+....|.+||.|+|..+ ++    +||.+++
T Consensus        20 ~~~~eLs~~~Gd~v~vl~~-~~----~Ww~~~~   47 (69)
T d1uhfa_          20 VEPGDLTFTEGEEILVTQK-DG----EWWTGSI   47 (69)
T ss_dssp             SSSSBCCBCTTCEEEECEE-ET----TEEEECS
T ss_pred             CCcCCcCCCCCCEEEEEEe-cC----CEEEEEE
Confidence            3345789999999999876 32    7999874

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.52  E-value=0.16  Score=37.70  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=27.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDF   72 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf   72 (191)
                      +....|..||.+.|..+.|+    +||.|++..-.|+.
T Consensus        44 ~~~LsF~~gdil~v~~~~d~----~WW~~r~~~~~~~~   77 (136)
T d1vyua1          44 GSGVNFEAKDFLHIKEKYSN----DWWIGRLVKEGGDI   77 (136)
T ss_dssp             TCBCEECTTCEEEEEEECSS----SEEEEEESSTTCCC
T ss_pred             CcccCCCCCCEEEEEeccCC----CcEEEEeccCCCce
Confidence            34578999999999998776    69999886555553

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=0.12  Score=33.55  Aligned_cols=30  Identities=13%  Similarity=0.398  Sum_probs=22.6

Q ss_pred             CCCCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           32 PRETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        32 P~~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +..+....|.+||.|.|+.+.+    .+||.|+.
T Consensus        19 a~~~~eLs~~~Gd~i~v~~~~~----~~Ww~~~~   48 (67)
T d1awwa_          19 PMNANDLQLRKGDEYFILEESN----LPWWRARD   48 (67)
T ss_dssp             CSSSSSCCCCSSCEEECCCCCS----SSEECCBC
T ss_pred             CCCcCCcCCCCCCEEEEEEEcC----CCeEEEEE
Confidence            3344678999999999986544    37999853

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=0.46  Score=30.18  Aligned_cols=26  Identities=19%  Similarity=0.529  Sum_probs=20.0

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      +.+..|.+||.|.|+...+     +||.++-
T Consensus        18 ~~eLs~~~Gd~i~v~~~~~-----~ww~~~~   43 (65)
T d1qcfa1          18 HEDLSFQKGDQMVVLEESG-----EWWKARS   43 (65)
T ss_dssp             TTBCCBCTTCEEEEEECCT-----TEEEEEE
T ss_pred             cCccCCCCCCEEEEEEECC-----CCEEEEE
Confidence            3578999999999997532     4888754

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.90  E-value=0.31  Score=30.65  Aligned_cols=43  Identities=21%  Similarity=0.476  Sum_probs=28.1

Q ss_pred             CCCCCccCCCeEEEEeecCCCCccceeeEEEEEEeccEEEEEEeccCCcceeeec
Q psy985           35 TINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVP   89 (191)
Q Consensus        35 ~~~~~~~egdeVEV~sran~~ep~gWW~a~V~~iKGdf~vVey~~~d~~~teIV~   89 (191)
                      +....|.+||.|+|+...+     +||.++  ...|..=.|     .++|-++++
T Consensus        15 ~~ELs~~~Gd~i~v~~~~~-----~ww~~~--~~~g~~G~~-----P~nyve~i~   57 (59)
T d1i07a_          15 SSELSVMKDDVLEILDDRR-----QWWKVR--NASGDSGFV-----PNNILDIMR   57 (59)
T ss_dssp             TTBCCBCTTCEEEECGGGC-----CEEEEE--CTTSCEEEE-----EGGGEEEEC
T ss_pred             CCeeeEcCCCEEEEEEEcC-----CcEEEE--EcCCCEEEE-----CHHHeEECC
Confidence            4578999999999987532     699874  345552111     445666654

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=0.16  Score=31.91  Aligned_cols=29  Identities=14%  Similarity=0.359  Sum_probs=18.5

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVIV   65 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~V   65 (191)
                      .+....|..||.|.|..+.++   .+||.|+.
T Consensus        13 ~~~ELs~~~Gd~v~v~~~~~~---~~W~~~~~   41 (56)
T d1gria1          13 ADDELSFKRGDILKVLNEECD---QNWYKAEL   41 (56)
T ss_dssp             SSSCCCBCTTCEEEC---------CCEEEEES
T ss_pred             CCCCcCCCCCCEEEEEeccCC---CCeEEEEE
Confidence            335789999999999876553   57998863

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.84  E-value=2.3  Score=27.11  Aligned_cols=65  Identities=15%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             eEEeecCChhHHHHHHhh--hchHHHHHhhhccEEEEcC--C--CCeeEEEeCchhhHhhhhhhhhhhhhhH
Q psy985          108 HKFDIEVPLDVQEFAKME--GAHKDFQKAIAAAIVRYIP--D--KGALSVISRDEACQKRASMIKDMHFRNL  173 (191)
Q Consensus       108 ~k~~i~VPedLre~~~~~--~~h~dF~kaiga~~v~y~p--e--~~~Lvvls~~e~~~kRA~mL~dmHfr~L  173 (191)
                      +..+|.||.++.-..-=.  ..-++.++..||- |..++  +  ..+++.|++++..+.+|.-+....++++
T Consensus         3 ~~~~i~VP~~~vg~iIGk~G~~I~~I~~~tga~-I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~   73 (74)
T d1j4wa1           3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVR-IQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSV   73 (74)
T ss_dssp             EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCE-EEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCHHHCCeeECCCCcHHHHHHHHcCCE-EEeccCCCCCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence            567899999988765433  3445788888863 33322  2  2238899999999999987776666554

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=0.76  Score=28.78  Aligned_cols=26  Identities=19%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             CCCCCCccCCCeEEEEeecCCCCccceeeEE
Q psy985           34 ETINSGFVENQEVEVFSKATEGESCGWWKVI   64 (191)
Q Consensus        34 ~~~~~~~~egdeVEV~sran~~ep~gWW~a~   64 (191)
                      .+.+..|..||.|+|..+.+     +||.++
T Consensus        19 ~~~eLs~~~Gd~i~v~~~~~-----~ww~~~   44 (62)
T d2iima1          19 HDGDLGFEKGEQLRILEQSG-----EWWKAQ   44 (62)
T ss_dssp             STTBCCBCTTCEEEEEECCS-----SEEEEE
T ss_pred             CcCCcCCCCCCEEEEeEEcC-----CCEEEE
Confidence            34578999999999997654     477664

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Tudor and KH domain containing protein, Tdrkh
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.96  E-value=2.8  Score=28.50  Aligned_cols=75  Identities=15%  Similarity=-0.067  Sum_probs=53.6

Q ss_pred             CCCCCCCcCceeEEeecCChhHHHHHHhh--hchHHHHHhhhccEEE-----EcCCCCeeEEEeCchhhHhhhhhhhhhh
Q psy985           97 NTNPPIDAKTFHKFDIEVPLDVQEFAKME--GAHKDFQKAIAAAIVR-----YIPDKGALSVISRDEACQKRASMIKDMH  169 (191)
Q Consensus        97 n~n~pi~~~~f~k~~i~VPedLre~~~~~--~~h~dF~kaiga~~v~-----y~pe~~~Lvvls~~e~~~kRA~mL~dmH  169 (191)
                      .+...++.++....+|.||.++.-+.==.  ..-++++...|+-.-.     ..+...+++.|+++...+++|..+...-
T Consensus         4 gs~~~~~~~~~v~~~i~IP~~~vg~vIGk~G~~Ik~I~~~tga~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~   83 (104)
T d1we8a_           4 GSSGILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEK   83 (104)
T ss_dssp             CCCCCCSSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCCCccCCCCCEEEEEEECHHHhcceECCCCcchHHHHHHcCCEEEECCCCCCCCCCccEEEEEeCHHHHHHHHHHHHHH
Confidence            34567888898999999999988875443  3345888888864322     1222446899999999999998777655


Q ss_pred             hh
Q psy985          170 FR  171 (191)
Q Consensus       170 fr  171 (191)
                      ++
T Consensus        84 i~   85 (104)
T d1we8a_          84 VS   85 (104)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53