Psyllid ID: psy987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFHKFDIEVPLDVQELGLMRDL
Secondary Structure (PSIPRED)
cccccEEEEcccccEEEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHccccccccccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccEEEEEEEEcccEEEEEEEcccccccEEccHHHccccccccccccccEEEEEEcccHHHHHHHHHHHcccccccccHccEcEEEEEEcccHHHHcccccc
Coil and Loop (DISEMBL)
MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYlgcqstfteivppermrqkntnppidaktfhkfdievpldqsdwliskngkntnppidaktfhkfdievpldvqelglmrdl
Flexible Loop (DISEMBL)
MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTfteivppermrqkntnppidaktfHKFDIEVPLDQSDWLISkngkntnppidaktfhkfdievpldvqelglmrdl
Low Complexity Region (SEG)
MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFHKFDIEVPLDVQELGLMRDL
Disordered region (IsUnstruct)
*****VEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIV***************AKTFHKFDIEVPLDQSDWLISK********IDAKTFHKFDIEVPLDVQ********
Disordered Region (DISOPRED)
****EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFHKFDIEVPLDVQELGLMR**
Disordered Region (DISEMBL)
MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFHKFDIEVPLDVQELGLMRDL
Disordered Region (DISPRO)
**ELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFHKFDIEVPLDVQELGLMRDL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFHKFDIEVPLDVQELGLMRDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q80WE1	593	Fragile X mental retardat	yes	N/A	0.175	0.033	0.482	2e-10
P35922	614	Fragile X mental retardat	yes	N/A	0.175	0.032	0.482	2e-10
Q06787	632	Fragile X mental retardat	yes	N/A	0.175	0.031	0.465	7e-10
Q5R9B4	594	Fragile X mental retardat	yes	N/A	0.175	0.033	0.465	8e-10
P51113	564	Fragile X mental retardat	N/A	N/A	0.131	0.026	0.490	2e-09
Q9NFU0	684	Fragile X mental retardat	yes	N/A	0.526	0.087	0.437	2e-09
Q6GLC9	590	Fragile X mental retardat	yes	N/A	0.131	0.025	0.490	2e-09
P51114	621	Fragile X mental retardat	no	N/A	0.675	0.123	0.363	1e-08
Q2TBT7	621	Fragile X mental retardat	no	N/A	0.675	0.123	0.363	1e-08
Q5XI81	568	Fragile X mental retardat	no	N/A	0.675	0.135	0.363	2e-08

>sp|Q80WE1|FMR1_RAT Fragile X mental retardation protein 1 homolog OS=Rattus norvegicus GN=Fmr1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 15  YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
           ++   V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct: 79  WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression. RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. Involved in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C).
Rattus norvegicus (taxid: 10116)

>sp|P35922|FMR1_MOUSE Fragile X mental retardation protein 1 homolog OS=Mus musculus GN=Fmr1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 15  YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
           ++   V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct: 79  WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. May play a role in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C) (By similarity). Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression.

Mus musculus (taxid: 10090)

>sp|Q06787|FMR1_HUMAN Fragile X mental retardation protein 1 OS=Homo sapiens GN=FMR1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 15  YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
           ++   V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  ++VP D
Sbjct: 79  WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPED 136

Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression (By similarity). RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. May play a role in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C).

Homo sapiens (taxid: 9606)

>sp|Q5R9B4|FMR1_PONAB Fragile X mental retardation protein 1 homolog OS=Pongo abelii GN=FMR1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 15  YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
           ++   V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  ++VP D
Sbjct: 79  WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPED 136

Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression. RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. May play a role in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C).

Pongo abelii (taxid: 9601)

>sp|P51113|FMR1A_XENLA Fragile X mental retardation protein 1 homolog A OS=Xenopus laevis GN=fmr1-a PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 36/53 (67%)

Query: 20  VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
           V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    +FHK  ++VP D
Sbjct: 84  VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKSSFHKVKLDVPED 136

Translation repressor. RNA-binding protein. Associated with polysomes and might be involved in the transport of mRNA from the nucleus to the cytoplasm (By similarity). Binds poly(G) and poly(U), and to a lower extent poly(C).

Xenopus laevis (taxid: 8355)

>sp|Q9NFU0|FMR1_DROME Fragile X mental retardation syndrome-related protein 1 OS=Drosophila melanogaster GN=Fmr1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 4/64 (6%)

Query: 7   EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFD 66
           E CG    ++  I+KM K + + V Y+G ++++TEI    R+R KN+NPPI AKTF++F 
Sbjct: 77  ETCG----WWVGIIKMRKAEIYAVAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFT 132

Query: 67  IEVP 70
           + VP
Sbjct: 133 LPVP 136

RNA-binding protein that associates with translating ribosomes and acts as a negative translational regulator of specific mRNAs. Represses translation of futsch to regulate microtubule-dependent synaptic growth and function. Part of the RNA interference (RNAi)-related apparatus; double-stranded RNA induces potent and specific gene silencing. Regulates photoreceptor structure and neurotransmission in the eye. Required for stability of the central pair of microtubules in the spermatid axoneme.

Drosophila melanogaster (taxid: 7227)

>sp|Q6GLC9|FMR1_XENTR Fragile X mental retardation protein 1 homolog OS=Xenopus tropicalis GN=fmr1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 36/53 (67%)

Query: 20  VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
           V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    +FHK  ++VP D
Sbjct: 84  VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKNSFHKVKLDVPED 136

Translation repressor. RNA-binding protein. Associated with polysomes and might be involved in the transport of mRNA from the nucleus to the cytoplasm. Binds poly(G) and poly(U), and to a lower extent poly(C).

Xenopus tropicalis (taxid: 8364)

>sp|P51114|FXR1_HUMAN Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)

Query: 2   DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
           DE+EV       E CG    ++   V+M+KG+F+V+EY  C +T+ EIV  ER+R  N N
Sbjct: 63  DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118

Query: 55  PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
             +   TF K  ++VP D  +   ++N 
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146

RNA-binding protein required for embryonic and postnatal development of muscle tissue. May regulate intracellular transport and local translation of certain mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q2TBT7|FXR1_BOVIN Fragile X mental retardation syndrome-related protein 1 OS=Bos taurus GN=FXR1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)

Query: 2   DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
           DE+EV       E CG    ++   V+M+KG+F+V+EY  C +T+ EIV  ER+R  N N
Sbjct: 63  DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118

Query: 55  PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
             +   TF K  ++VP D  +   ++N 
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146

RNA-binding protein required for embryonic and postnatal development of muscle tissue. May regulate intracellular transport and local translation of certain mRNAs.

Bos taurus (taxid: 9913)

>sp|Q5XI81|FXR1_RAT Fragile X mental retardation syndrome-related protein 1 OS=Rattus norvegicus GN=Fxr1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)

Query: 2   DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
           DE+EV       E CG    ++   V+M+KG+F+V+EY  C +T+ EIV  ER+R  N N
Sbjct: 63  DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118

Query: 55  PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
             +   TF K  ++VP D  +   ++N 
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146

RNA-binding protein required for embryonic and postnatal development of muscle tissue. May regulate intracellular transport and local translation of certain mRNAs.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
206725166	577	fmr [Gryllus bimaculatus]	0.526	0.103	0.640	3e-16
170070480	738	Fmr1 [Culex quinquefasciatus] gi|1678663	0.657	0.101	0.493	2e-15
380018728	157	PREDICTED: fragile X mental retardation	0.649	0.471	0.512	4e-14
157122825	717	fragile X mental retardation syndrome-re	0.578	0.092	0.514	5e-14
241123249	506	HyFMR1 protein, putative [Ixodes scapula	0.578	0.130	0.515	8e-14
312374565	282	hypothetical protein AND_15781 [Anophele	0.745	0.301	0.438	1e-13
328783508	602	PREDICTED: fragile X mental retardation	0.649	0.122	0.512	2e-13
340725688	605	PREDICTED: fragile X mental retardation	0.649	0.122	0.512	2e-13
328783510	597	PREDICTED: fragile X mental retardation	0.649	0.123	0.512	2e-13
350404195	599	PREDICTED: fragile X mental retardation	0.649	0.123	0.512	2e-13

>gi|206725166|dbj|BAG71783.1| fmr [Gryllus bimaculatus]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 4/64 (6%)

Query: 7   EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFD 66
           E CG    ++K I+KMIKGDFHVVEYLG ++T+TEIVP +R+R KN NPPI+  TF KF+
Sbjct: 88  EACG----WWKAIIKMIKGDFHVVEYLGWENTYTEIVPSDRLRPKNPNPPINKSTFFKFE 143

Query: 67  IEVP 70
           IEVP
Sbjct: 144 IEVP 147

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170070480|ref|XP_001869595.1| Fmr1 [Culex quinquefasciatus] gi|167866372|gb|EDS29755.1| Fmr1 [Culex quinquefasciatus]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 57/79 (72%), Gaps = 4/79 (5%)

Query: 5   EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHK 64
           E E CG    +++ ++KM+KGDF VVEYLG  +++TEIV  +R+R KNTNPPI+ KTF +
Sbjct: 272 ENEACG----WWRAVIKMMKGDFFVVEYLGWDNSYTEIVSADRLRVKNTNPPINEKTFFR 327

Query: 65  FDIEVPLDQSDWLISKNGK 83
           F+IEVP D  ++ +  + K
Sbjct: 328 FEIEVPEDIREYSLLNSAK 346

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018728|ref|XP_003693275.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like, partial [Apis florea]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 5  EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHK 64
          E E CG    ++K I+KM KG F VVEY G +  +TEIV  ER+R KN NPPID  TFHK
Sbjct: 11 EHEACG----WWKAIIKMSKGGFQVVEYSGWECAYTEIVASERLRAKNPNPPIDKNTFHK 66

Query: 65 FDIEVPLDQSDWLISKNG 82
           +IEVP D  ++   +N 
Sbjct: 67 IEIEVPEDLREFAKMENA 84

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157122825|ref|XP_001659932.1| fragile X mental retardation syndrome-related protein 1, putative [Aedes aegypti] gi|108874593|gb|EAT38818.1| AAEL009326-PA [Aedes aegypti]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 53/70 (75%), Gaps = 4/70 (5%)

Query: 7   EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFD 66
           E CG    +++ ++KM+KG+F VVEYLG  +++TEIV  +R+R KNTNPPI+ KTF +F+
Sbjct: 69  EACG----WWRAVIKMMKGEFFVVEYLGWDNSYTEIVSADRLRAKNTNPPINEKTFFRFE 124

Query: 67  IEVPLDQSDW 76
           IEVP D  ++
Sbjct: 125 IEVPEDIREY 134

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241123249|ref|XP_002403837.1| HyFMR1 protein, putative [Ixodes scapularis] gi|215493540|gb|EEC03181.1| HyFMR1 protein, putative [Ixodes scapularis]

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 47/66 (71%)

Query: 11  ENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVP 70
           E   +++ +VKM KGDFHVVEY G  + ++EIVP +R+R KN NPPI   TF KF++EVP
Sbjct: 84  EASGWWEAMVKMTKGDFHVVEYQGWDTAYSEIVPGDRLRPKNVNPPITKSTFTKFELEVP 143

Query: 71  LDQSDW 76
            D  ++
Sbjct: 144 EDLREY 149

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374565|gb|EFR22095.1| hypothetical protein AND_15781 [Anopheles darlingi]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 4/89 (4%)

Query: 7   EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFD 66
           E CG    +++ ++KM+KG+F VVEY+G + ++TEIV  +R+R  NTNPPI+ KTFH+F+
Sbjct: 57  EACG----WWRAVLKMMKGEFFVVEYVGWEHSYTEIVHSDRIRPVNTNPPINTKTFHRFE 112

Query: 67  IEVPLDQSDWLISKNGKNTNPPIDAKTFH 95
           IEVP +  D  I    +     I A   H
Sbjct: 113 IEVPEEVQDAKIDGVHQEFQKAIRAAICH 141

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783508|ref|XP_003250305.1| PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform 1 [Apis mellifera]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 5   EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHK 64
           E E CG    ++K I+KM KG F VVEY G +  +TEIV  ER+R KN NPPID  TFHK
Sbjct: 111 EHEACG----WWKAIIKMSKGGFQVVEYSGWECAYTEIVASERLRAKNPNPPIDKNTFHK 166

Query: 65  FDIEVPLDQSDWLISKNG 82
            +IEVP D  ++   +N 
Sbjct: 167 IEIEVPEDLREFAKMENA 184

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725688|ref|XP_003401198.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like isoform 1 [Bombus terrestris] gi|340725690|ref|XP_003401199.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like isoform 2 [Bombus terrestris]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 5   EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHK 64
           E E CG    ++K I+KM KG F VVEY G +  +TEIV  ER+R KN NPPID  TFHK
Sbjct: 111 EHEACG----WWKAIIKMSKGGFQVVEYSGWECAYTEIVASERLRAKNPNPPIDKNTFHK 166

Query: 65  FDIEVPLDQSDWLISKNG 82
            +IEVP D  ++   +N 
Sbjct: 167 IEIEVPEDLREFAKMENA 184

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783510|ref|XP_394058.4| PREDICTED: fragile X mental retardation syndrome-related protein 1 isoform 2 [Apis mellifera]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 5   EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHK 64
           E E CG    ++K I+KM KG F VVEY G +  +TEIV  ER+R KN NPPID  TFHK
Sbjct: 73  EHEACG----WWKAIIKMSKGGFQVVEYSGWECAYTEIVASERLRAKNPNPPIDKNTFHK 128

Query: 65  FDIEVPLDQSDWLISKNG 82
            +IEVP D  ++   +N 
Sbjct: 129 IEIEVPEDLREFAKMENA 146

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404195|ref|XP_003487031.1| PREDICTED: fragile X mental retardation syndrome-related protein 1-like [Bombus impatiens]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 5   EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHK 64
           E E CG    ++K I+KM KG F VVEY G +  +TEIV  ER+R KN NPPID  TFHK
Sbjct: 73  EHEACG----WWKAIIKMSKGGFQVVEYSGWECAYTEIVASERLRAKNPNPPIDKNTFHK 128

Query: 65  FDIEVPLDQSDWLISKNG 82
            +IEVP D  ++   +N 
Sbjct: 129 IEIEVPEDLREFAKMENA 146

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
UNIPROTKB|F1NF19	565	FMR1 "Uncharacterized protein"	0.464	0.093	0.528	6.4e-12
UNIPROTKB|E9PFF5	490	FXR1 "Fragile X mental retarda	0.710	0.165	0.395	1.1e-10
UNIPROTKB|Q6GLC9	590	fmr1 "Fragile X mental retarda	0.464	0.089	0.490	1.7e-10
UNIPROTKB|Q8IXW7	297	FMR1 "FMR1 protein" [Homo sapi	0.464	0.178	0.509	2.6e-10
UNIPROTKB|E9PTH3	448	Fmr1 "Fragile X mental retarda	0.464	0.118	0.528	3.3e-10
UNIPROTKB|E9PSS6	519	Fmr1 "Fragile X mental retarda	0.464	0.102	0.528	4.2e-10
RGD|2623	593	Fmr1 "fragile X mental retarda	0.464	0.089	0.528	5.2e-10
FB|FBgn0028734	684	Fmr1 "Fmr1" [Drosophila melano	0.526	0.087	0.437	5.4e-10
MGI|MGI:95564	614	Fmr1 "fragile X mental retarda	0.464	0.086	0.528	5.5e-10
UNIPROTKB|E9PSS4	614	Fmr1 "Fragile X mental retarda	0.464	0.086	0.528	5.5e-10

UNIPROTKB|F1NF19 FMR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0071598 "neuronal ribonucleoprotein granule" evidence=IEA

UNIPROTKB|E9PFF5 FXR1 "Fragile X mental retardation syndrome-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 38/96 (39%), Positives = 53/96 (55%)

Query:     1 MDELEVEVCGENGAYYKVI---------------VKMIKGDFHVVEYLGCQSTFTEIVPP 45
             M EL VEV G NGA+YKV                V+M+KG+F+V+EY  C +T+ EIV  
Sbjct:     1 MAELTVEVRGSNGAFYKVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTF 60

Query:    46 ERMRQKNTNPPIDAKTFHKFDIEVPLDQSDWLISKN 81
             ER+R  N N  +   TF K  ++VP D  +   ++N
Sbjct:    61 ERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANEN 96

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q6GLC9 fmr1 "Fragile X mental retardation protein 1 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 146 (56.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 26/53 (49%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    +FHK  ++VP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKNSFHKVKLDVPED 136

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0045947 "negative regulation of translational initiation" evidence=ISS

UNIPROTKB|Q8IXW7 FMR1 "FMR1 protein" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  ++VP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPED 136

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E9PTH3 Fmr1 "Fragile X mental retardation protein 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E9PSS6 Fmr1 "Fragile X mental retardation protein 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

GO:0003723 "RNA binding" evidence=IEA

RGD|2623 Fmr1 "fragile X mental retardation 1" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

GO:0003723 "RNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISO;ISS

GO:0006417 "regulation of translation" evidence=TAS

GO:0007417 "central nervous system development" evidence=IEA;ISO

GO:0010494 "cytoplasmic stress granule" evidence=IEA;ISO

GO:0030425 "dendrite" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0045947 "negative regulation of translational initiation" evidence=ISO;ISS

GO:0051028 "mRNA transport" evidence=IEA

GO:0071598 "neuronal ribonucleoprotein granule" evidence=IEA;ISO

GO:0005844 "polysome" evidence=IDA

FB|FBgn0028734 Fmr1 "Fmr1" [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query:     7 EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFD 66
             E CG    ++  I+KM K + + V Y+G ++++TEI    R+R KN+NPPI AKTF++F 
Sbjct:    77 ETCG----WWVGIIKMRKAEIYAVAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFT 132

Query:    67 IEVP 70
             + VP
Sbjct:   133 LPVP 136

GO:0003729 "mRNA binding" evidence=ISS;IDA;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=IEP;IDA

GO:0007269 "neurotransmitter secretion" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0007268 "synaptic transmission" evidence=IMP

GO:0007411 "axon guidance" evidence=IGI;IMP

GO:0042331 "phototaxis" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0045475 "locomotor rhythm" evidence=IMP

GO:0016442 "RNA-induced silencing complex" evidence=TAS;IPI

GO:0003723 "RNA binding" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0006417 "regulation of translation" evidence=IMP;NAS

GO:0007416 "synapse assembly" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP;TAS

GO:0040011 "locomotion" evidence=TAS

GO:0050807 "regulation of synapse organization" evidence=IGI;IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0035068 "micro-ribonucleoprotein complex" evidence=TAS

GO:0007288 "sperm axoneme assembly" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0050774 "negative regulation of dendrite morphogenesis" evidence=IMP

GO:0007281 "germ cell development" evidence=IGI;IMP

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IGI

GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP

GO:0051964 "negative regulation of synapse assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0007279 "pole cell formation" evidence=IMP

GO:0045448 "mitotic cell cycle, embryonic" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0031507 "heterochromatin assembly" evidence=IMP

GO:0007349 "cellularization" evidence=IGI;IDA

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0050802 "circadian sleep/wake cycle, sleep" evidence=IMP

GO:0051028 "mRNA transport" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IGI;IMP

GO:0048134 "germ-line cyst formation" evidence=IGI;IMP

GO:0007614 "short-term memory" evidence=IMP

GO:0009794 "regulation of mitotic cell cycle, embryonic" evidence=IGI

MGI|MGI:95564 Fmr1 "fragile X mental retardation syndrome 1" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

GO:0003723 "RNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005844 "polysome" evidence=ISO

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0007417 "central nervous system development" evidence=IMP

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045947 "negative regulation of translational initiation" evidence=IDA

GO:0051028 "mRNA transport" evidence=IEA

GO:0071598 "neuronal ribonucleoprotein granule" evidence=IDA

UNIPROTKB|E9PSS4 Fmr1 "Fragile X mental retardation protein 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
             V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TFHK  +EVP D
Sbjct:    84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0071598 "neuronal ribonucleoprotein granule" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	98.31
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.0
PF11717	55	Tudor-knot: RNA binding activity-knot of a chromod	96.4
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	96.39
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	95.93
smart00561	96	MBT Present in Drosophila Scm, l(3)mbt, and verteb	95.36
PF02820	73	MBT: mbt repeat; InterPro: IPR004092 The function	93.57
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	92.96
PF00567	121	TUDOR: Tudor domain; InterPro: IPR008191 There are	87.51

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=98.31  E-value=1.7e-06  Score=56.09  Aligned_cols=50  Identities=32%  Similarity=0.409  Sum_probs=36.1

Q ss_pred             ceeeeecC----CCcEEeEEEEEEeCC-eEEEEEccCcce------eeeeecCccccCCCC
Q psy987            4 LEVEVCGE----NGAYYKVIVKMIKGD-FHVVEYLGCQST------FTEIVPPERMRQKNT   53 (114)
Q Consensus         4 l~VEv~g~----ngawwkA~Vk~vkgd-~~vV~f~~w~~~------~~eiv~~~RLrp~n~   53 (114)
                      -.|||+..    .|+||.|+|.+..++ .+.|+|.+...+      .++.|+..+|||.++
T Consensus         5 ~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP   65 (68)
T PF05641_consen    5 DEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPP   65 (68)
T ss_dssp             -EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGGGEEE---
T ss_pred             CEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechheEECcCc
Confidence            36888864    689999999999999 999999763322      789999999999875

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.00  E-value=2.3e-05  Score=49.00  Aligned_cols=49  Identities=24%  Similarity=0.386  Sum_probs=41.0

Q ss_pred             eeeeec-CCCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987            5 EVEVCG-ENGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus         5 ~VEv~g-~ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      .||++= ++|+||.|+|..+.+ +.+.|.|.+.....++.|+..+|||.+.
T Consensus         8 ~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~   58 (61)
T smart00743        8 RVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPHPP   58 (61)
T ss_pred             EEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccCCC
Confidence            477775 488999999999999 8899999974455689999999999864

Domain in plant sequences with possible chromatin-associated functions.

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F

Probab=96.40  E-value=0.0077  Score=37.53  Aligned_cols=39  Identities=28%  Similarity=0.519  Sum_probs=34.4

Q ss_pred             CCCcEEeEEEEEEeCC----eEEEEEccCcceeeeeecCcccc
Q psy987           11 ENGAYYKVIVKMIKGD----FHVVEYLGCQSTFTEIVPPERMR   49 (114)
Q Consensus        11 ~ngawwkA~Vk~vkgd----~~vV~f~~w~~~~~eiv~~~RLr   49 (114)
                      .+|.||.|+|.+++.+    .|.|-|.||+..+.+=++.+||+
T Consensus        12 ~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i~   54 (55)
T PF11717_consen   12 KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRIR   54 (55)
T ss_dssp             TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred             CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence            5889999999999887    49999999999999999998885

...

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=96.39  E-value=0.012  Score=34.58  Aligned_cols=43  Identities=21%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             eeeecC-CCcEEeEEEEEEe-CCeEEEEEccCcceeeeeecCccccC
Q psy987            6 VEVCGE-NGAYYKVIVKMIK-GDFHVVEYLGCQSTFTEIVPPERMRQ   50 (114)
Q Consensus         6 VEv~g~-ngawwkA~Vk~vk-gd~~vV~f~~w~~~~~eiv~~~RLrp   50 (114)
                      +-++-+ .|.||.|+|..+. ++.+.|.|.....  .+.++...|||
T Consensus         4 c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~--~~~v~~~~l~~   48 (48)
T cd04508           4 CLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGN--TEVVPLSDLRP   48 (48)
T ss_pred             EEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCC--cEEEeHHHcCC
Confidence            334444 4999999999999 8899999998554  35577767764

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>smart00333 TUDOR Tudor domain

Probab=95.93  E-value=0.028  Score=34.04  Aligned_cols=46  Identities=24%  Similarity=0.485  Sum_probs=34.9

Q ss_pred             eeeecCCCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987            6 VEVCGENGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus         6 VEv~g~ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      |.++-+.|.||.|+|..+.+ ..+.|.|.....  .+-|+.+.||+.+.
T Consensus         9 ~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~--~~~v~~~~l~~l~~   55 (57)
T smart00333        9 VAARWEDGEWYRARIIKVDGEQLYEVFFIDYGN--EEVVPPSDLRPLPE   55 (57)
T ss_pred             EEEEeCCCCEEEEEEEEECCCCEEEEEEECCCc--cEEEeHHHeecCCC
Confidence            33343789999999999999 899999998444  35666777777653

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

Probab=95.36  E-value=0.077  Score=36.75  Aligned_cols=49  Identities=12%  Similarity=0.080  Sum_probs=37.9

Q ss_pred             ceeeeecCCCcEEeEEEEEEeCCeEEEEEccCcceeeee--ecCccccCCC
Q psy987            4 LEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEI--VPPERMRQKN   52 (114)
Q Consensus         4 l~VEv~g~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~ei--v~~~RLrp~n   52 (114)
                      |++--..+++.+|.|.|.++.|..+.|.|++|+..|.+-  +..-+|.|..
T Consensus        34 LEavD~~~~~~i~vAtV~~v~g~~l~v~~dg~~~~~D~W~~~~S~~I~PvG   84 (96)
T smart00561       34 LEAVDPRNPSLICVATVVEVKGYRLLLHFDGWDDKYDFWCDADSPDIHPVG   84 (96)
T ss_pred             EEEECCCCCceEEEEEEEEEECCEEEEEEccCCCcCCEEEECCCCCcccCc
Confidence            444445667899999999999999999999999875444  4555666663

Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.

>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression

Probab=93.57  E-value=0.4  Score=31.10  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             CCCcEEeEEEEEEeCCeEEEEEccCcceeee--eecCccccCCC
Q psy987           11 ENGAYYKVIVKMIKGDFHVVEYLGCQSTFTE--IVPPERMRQKN   52 (114)
Q Consensus        11 ~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~e--iv~~~RLrp~n   52 (114)
                      ++..+|.|.|..+.|+.+.|.|.+|+..+.+  -++.-+|-|..
T Consensus        10 ~~~~~~vAtV~~v~g~~l~v~~dg~~~~~d~w~~~~S~~i~PvG   53 (73)
T PF02820_consen   10 NPSLICVATVVKVCGGRLLVRYDGWDDDYDFWCHIDSPRIFPVG   53 (73)
T ss_dssp             ECCEEEEEEEEEEETTEEEEEETTSTGGGEEEEETTSTTEEETT
T ss_pred             CCCeEEEEEEEEEeCCEEEEEEcCCCCCccEEEECCCCCeeecc
Confidence            3678999999999999999999999975554  44556666663

The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=92.96  E-value=0.24  Score=39.88  Aligned_cols=41  Identities=24%  Similarity=0.434  Sum_probs=35.1

Q ss_pred             CCCcEEeEEEEEEeCC--eEEEEEccCcceeeeeecCccccCCCC
Q psy987           11 ENGAYYKVIVKMIKGD--FHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        11 ~ngawwkA~Vk~vkgd--~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +.|.||.|.|..|.++  .++|.|.++..  ++.|...-|+|...
T Consensus        81 ~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn--~e~v~l~dL~~~~~  123 (264)
T PF06003_consen   81 EDGQYYPATIESIDEEDGTCVVVFTGYGN--EEEVNLSDLKPSEG  123 (264)
T ss_dssp             TTSSEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGEEETT-
T ss_pred             CCCCEEEEEEEEEcCCCCEEEEEEcccCC--eEeeehhhhccccc
Confidence            5788999999999974  89999999876  58999999998864

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []

Probab=87.51  E-value=1.9  Score=28.19  Aligned_cols=41  Identities=22%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             cCCCcEEeEEE-EEEeCCeEEEEEccCcceeeeeecCccccCCC
Q psy987           10 GENGAYYKVIV-KMIKGDFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        10 g~ngawwkA~V-k~vkgd~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .+.|.||.|.| ....++.+.|.|-....  ++.++...|++.+
T Consensus        63 ~~~~~w~Ra~I~~~~~~~~~~V~~iD~G~--~~~v~~~~l~~l~  104 (121)
T PF00567_consen   63 SEDGRWYRAVITVDIDENQYKVFLIDYGN--TEKVSASDLRPLP  104 (121)
T ss_dssp             TTTSEEEEEEEEEEECTTEEEEEETTTTE--EEEEEGGGEEE--
T ss_pred             ecCCceeeEEEEEecccceeEEEEEecCc--eEEEcHHHhhhhC
Confidence            34789999999 88888999999997444  4557777888776

Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
2bkd_N	134	Structure Of The N-Terminal Domain Of Fragile X Men		2e-09
3kuf_A	131	The Crystal Structure Of The Tudor Domains From Fxr		1e-07
3h8z_A	128	The Crystal Structure Of The Tudor Domains From Fxr		1e-06

>pdb|2BKD|N Chain N, Structure Of The N-Terminal Domain Of Fragile X Mental Retardation Protein Length = 134

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 11  ENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVP 70
           E   ++   V+MIKG+F+V+EY  C +T+ EIV  ER+R  N N P    TF K  ++VP
Sbjct: 75  EPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFXKIKLDVP 134

>pdb|3KUF|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr1 Length = 131

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 2   DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
           DE+EV       E CG    ++   V+M+KG+F+V+EY  C +T+ EIV  ER+R  N N
Sbjct: 62  DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 117
Query: 55  PPIDAKTFHKFDIE 68
             +   TF K  ++
Sbjct: 118 KTVKKNTFFKCTVD 131

>pdb|3H8Z|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr2 Length = 128

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 5   EVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTF 62
           E E CG    ++   V+  KGDF+V+EY  C +T+ EIV  ER+R  N NP     +F
Sbjct: 75  EQEPCG----WWLARVRXXKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	1e-14
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	4e-05

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Length = 128

 Score = 63.9 bits (155), Expect = 1e-14
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 5   EVEV-----CGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDA 59
           EVEV       E   ++   V+M+KGDF+V+EY  C +T+ EIV  ER+R  N NP    
Sbjct: 66  EVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATK 125

Query: 60  KTF 62
            +F
Sbjct: 126 GSF 128

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Length = 128

 Score = 39.3 bits (91), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 1  MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMR 49
             L VEV G NGA+YK  VK +  D   + +     +    +P   +R
Sbjct: 3  FQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQS-ERQIPFGDVR 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	99.95
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	99.78
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	97.44
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	97.22
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	97.13
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	96.88
2d9t_A	78	Tudor domain-containing protein 3; structural geno	96.82
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	96.75
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	96.67
3sd4_A	69	PHD finger protein 20; tudor domain, transcription	96.53
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	96.52
2f5k_A	102	MORF-related gene 15 isoform 1; beta barrel, gene	95.89
3m9q_A	101	Protein MALE-specific lethal-3; chromodomain, MSL3	95.6
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	95.59
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	95.54
2eqk_A	85	Tudor domain-containing protein 4; structural geno	94.73
3m9p_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	94.6
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	94.53
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	94.51
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	93.39
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	94.21
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	94.09
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	93.65
2k3y_A	136	Chromatin modification-related protein EAF3; dimet	92.72
2lrq_A	85	Protein MRG15, NUA4 complex subunit EAF3 homolog;	91.8
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	92.49
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	91.86
1wjq_A	107	KIAA1798 protein; MBT domain, structural genomics,	91.52
2hqx_A	246	P100 CO-activator tudor domain; human P100 tudor d	91.24
3oa6_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	91.07
2bud_A	92	Males-absent on the first protein; transferase, MO	90.51
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	90.17
4b9w_A	201	TDRD1, tudor domain-containing protein 1; replicat	89.45
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	88.78
4b9x_A	226	TDRD1, tudor domain-containing protein 1; replicat	88.24
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	87.63
2r58_A	265	Polycomb protein SCM; MBT repeat, sex COMB on midl	87.45
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	85.12
1wjr_A	127	KIAA1617 protein; MBT domain, structural genomics,	83.51
2biv_A	243	SCML2 protein, sex COMB on midleg-like protein 2;	83.47
3e9g_A	130	Chromatin modification-related protein EAF3; chrom	82.31
3bdl_A	570	Staphylococcal nuclease domain-containing protein	82.23
2e5p_A	68	Protein PHF1, PHD finger protein 1; tudor domain,	81.71
2eqj_A	66	Metal-response element-binding transcription facto	80.24

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=99.95  E-value=4.1e-28  Score=176.02  Aligned_cols=94  Identities=23%  Similarity=0.238  Sum_probs=78.5

Q ss_pred             CCcceeeeecCCCcEEeEEEEEEeCCeEEEEEcc-CcceeeeeecCccccCCCCC-------------------C-----
Q psy987            1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLG-CQSTFTEIVPPERMRQKNTN-------------------P-----   55 (114)
Q Consensus         1 m~~l~VEv~g~ngawwkA~Vk~vkgd~~vV~f~~-w~~~~~eiv~~~RLrp~n~n-------------------~-----   55 (114)
                      .++|.|||||+||+||+|+|+++++|.++|+|+| ||++.+.+|+..||+|++..                   +     
T Consensus         3 ~~~~~VEV~~~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw   82 (128)
T 3h8z_A            3 FQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWW   82 (128)
T ss_dssp             TTTCEEEEECTTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEE
T ss_pred             ccccEEEEecCCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccE
Confidence            4799999999999999999999999999999999 99999999999999998621                   1     


Q ss_pred             ----CCCCCceEEEEEc-cCccHHHH--HhhcCCCCCCCCCCCCce
Q psy987           56 ----PIDAKTFHKFDIE-VPLDQSDW--LISKNGKNTNPPIDAKTF   94 (114)
Q Consensus        56 ----pm~K~~F~~ie~~-vP~dl~Ei--~~r~r~~n~n~pi~~~~f   94 (114)
                          .|.||+||.++|+ +.++|+||  ++|||+.|+|+||+|+||
T Consensus        83 ~a~I~~~kg~f~~V~y~~~~~~~~EiV~~~rlR~~n~~~p~~~~~f  128 (128)
T 3h8z_A           83 LARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF  128 (128)
T ss_dssp             EEEEEEEETTEEEEEETTC----CEEECGGGEEECCCCCCC-----
T ss_pred             EEEEEEeeCCEEEEEEcCCCCCcceEEehhheEeCCCCCCcccCCC
Confidence                2899999999999 79999999  999999999999999998

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=99.78  E-value=3.2e-19  Score=129.24  Aligned_cols=59  Identities=42%  Similarity=0.704  Sum_probs=46.1

Q ss_pred             ceeeeecC-----CCcEEeEEEEEEeCCeEEEEEccCcceeeeeecCccccCCCCCCCCCCCce
Q psy987            4 LEVEVCGE-----NGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTF   62 (114)
Q Consensus         4 l~VEv~g~-----ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv~~~RLrp~n~n~pm~K~~F   62 (114)
                      -.|||.-.     +||||+|+|+|+||++++|+|.+|+++|++||+.+||||+|+|+||+|++|
T Consensus        65 d~VEV~~~~~d~ep~gWw~a~I~~~kg~f~~V~y~~~~~~~~EiV~~~rlR~~n~~~p~~~~~f  128 (128)
T 3h8z_A           65 DEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF  128 (128)
T ss_dssp             CEEEEEECC---CCCEEEEEEEEEEETTEEEEEETTC----CEEECGGGEEECCCCCCC-----
T ss_pred             CEEEEEecCCCCCcCccEEEEEEEeeCCEEEEEEcCCCCCcceEEehhheEeCCCCCCcccCCC
Confidence            46787653     568999999999999999999999999999999999999999999999998

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=97.44  E-value=0.0004  Score=42.84  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=34.9

Q ss_pred             CCCcEEeEEEEEEeC--CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           11 ENGAYYKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg--d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +.|.||.|+|..+.+  +.+.|.|..+..  ++.|+..+|||.++
T Consensus        16 ~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn--~e~v~~~~Lr~~~~   58 (59)
T 1mhn_A           16 EDGCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPIC   58 (59)
T ss_dssp             TTSCEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGCBCTTC
T ss_pred             CCCCEEEEEEEEEcCCCCEEEEEEEcCCC--EEEEcHHHeeCCCC
Confidence            368899999999985  899999998765  58888889998764

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=97.22  E-value=0.00076  Score=42.34  Aligned_cols=40  Identities=18%  Similarity=0.408  Sum_probs=34.7

Q ss_pred             CCCcEEeEEEEEEeC--CeEEEEEccCcceeeeeecCccccCCC
Q psy987           11 ENGAYYKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg--d~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      +.|.||.|+|..+.+  +.+.|.|..+.+  ++.|+..+|||.+
T Consensus        21 ~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn--~e~V~~~~Lrpl~   62 (64)
T 4a4f_A           21 EDGQCYEAEIEEIDEENGTAAITFAGYGN--AEVTPLLNLKPVE   62 (64)
T ss_dssp             TTSSEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGEECCS
T ss_pred             CCCCEEEEEEEEEcCCCCEEEEEEEecCC--EEEEeHHHcEeCC
Confidence            478899999999997  589999998765  5889999999875

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=97.13  E-value=0.001  Score=44.80  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             CCCcEEeEEEEEEeC--CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           11 ENGAYYKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg--d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +.|.||.|+|..+.+  +.+.|.|..+..  ++.|+..+|||.+.
T Consensus        23 ~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN--~E~V~~~~Lrp~~~   65 (88)
T 1g5v_A           23 EDGCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPIC   65 (88)
T ss_dssp             TTCCEEEEEEEEEETTTTEEEEEETTTCC--EEEEEGGGCBCCC-
T ss_pred             CCCCEEEEEEEEecCCCCEEEEEEecCCC--EEEEcHHHcccCCh
Confidence            478899999999986  899999998776  58889999999864

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.88  E-value=0.0018  Score=42.33  Aligned_cols=41  Identities=10%  Similarity=0.182  Sum_probs=35.3

Q ss_pred             cCCCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           10 GENGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        10 g~ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      =+.|.||.|+|..+.+ +.++|.|..+   ..+.+...+|||.+.
T Consensus        20 wsDg~~Y~A~I~~v~~~~~~~V~f~Dy---n~e~v~~~~lrplp~   61 (74)
T 2equ_A           20 WTDCRYYPAKIEAINKEGTFTVQFYDG---VIRCLKRMHIKAMPE   61 (74)
T ss_dssp             CSSSSEEEEEEEEESTTSSEEEEETTS---CEEEECGGGEECCCG
T ss_pred             CCCCCEEEEEEEEECCCCEEEEEEecC---CeEEecHHHCeeCCh
Confidence            3478899999999987 6899999977   478899999999975

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=96.82  E-value=0.0037  Score=40.68  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=35.1

Q ss_pred             CCCcEEeEEEEEEeC--CeEEEEEccCcceeeeeecCccccCCCCC
Q psy987           11 ENGAYYKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNTN   54 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg--d~~vV~f~~w~~~~~eiv~~~RLrp~n~n   54 (114)
                      +.|.||.|+|..+.+  +.+.|.|..+..  ++.|+...|||.+..
T Consensus        22 ~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN--~e~V~~~~Lr~l~~~   65 (78)
T 2d9t_A           22 EDNKFYRAEVEALHSSGMTAVVKFTDYGN--YEEVLLSNIKPVQTE   65 (78)
T ss_dssp             TTCCEEEEEEEEECSSSSEEEEEETTTTE--EEEEEGGGEEECCCC
T ss_pred             CCCCEEEEEEEEEeCCCCEEEEEEEcCCC--eEEEcHHHeEeCCHH
Confidence            368899999999986  789999998665  578888899988753

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=96.75  E-value=0.0026  Score=38.32  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             cCCCcEEeEEEEEEe--CCeEEEEEccCcceeeeeecCccccCC
Q psy987           10 GENGAYYKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPERMRQK   51 (114)
Q Consensus        10 g~ngawwkA~Vk~vk--gd~~vV~f~~w~~~~~eiv~~~RLrp~   51 (114)
                      .+.|.||.|+|..+.  ++.+.|.|.....  ++.++...|||.
T Consensus        13 s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn--~e~v~~~~lrpi   54 (54)
T 3s6w_A           13 WEDNKFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPI   54 (54)
T ss_dssp             TTTTEEEEEEEEEC--CCSEEEEEETTTCC--EEEEEGGGEECC
T ss_pred             CCCCCEEEEEEEEEeCCCCEEEEEEEccCC--eEEEeHHHEEEC
Confidence            357889999999996  4689999998665  588888999873

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=96.67  E-value=0.007  Score=40.54  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=42.3

Q ss_pred             ceeeeecCCCcEEeEEEEEEe--CCeEEEEEccCcceeeeeecCc--cccCCC
Q psy987            4 LEVEVCGENGAYYKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPE--RMRQKN   52 (114)
Q Consensus         4 l~VEv~g~ngawwkA~Vk~vk--gd~~vV~f~~w~~~~~eiv~~~--RLrp~n   52 (114)
                      +-||+.-..+-||.|+|+.+.  |..+.|.|.+|+..|-+-+..+  ||+|..
T Consensus        24 mkLEA~D~~~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g   76 (88)
T 2eqm_A           24 ARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLE   76 (88)
T ss_dssp             CEEEEECTTSCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred             CEEEEEcCCCCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence            467887777789999998766  8899999999999999998866  999985

>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A

Probab=96.53  E-value=0.0078  Score=38.19  Aligned_cols=49  Identities=10%  Similarity=0.141  Sum_probs=39.0

Q ss_pred             cceeeeecCCCcEEeEEEEEE--eCCeEEEEEccCcceeeeeecCc--cccCC
Q psy987            3 ELEVEVCGENGAYYKVIVKMI--KGDFHVVEYLGCQSTFTEIVPPE--RMRQK   51 (114)
Q Consensus         3 ~l~VEv~g~ngawwkA~Vk~v--kgd~~vV~f~~w~~~~~eiv~~~--RLrp~   51 (114)
                      .+-+|+..-.+-||.|+|..|  .|..+.|.|.+|+..|.+-+..+  +|+|.
T Consensus        16 GmkLEa~d~~~p~~~AtV~~v~~~~~~~~VhfdGw~~~~D~W~~~dS~~i~Pv   68 (69)
T 3sd4_A           16 GAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYLRPL   68 (69)
T ss_dssp             TCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCGGGCEEEETTCTTEECC
T ss_pred             CCEEEEEECCCCccccEEEEEeccCCEEEEEeCCCCCCCCEEEcCCCCCeeEC
Confidence            356888777777899999998  89999999999998887766543  45553

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=96.52  E-value=0.0051  Score=40.09  Aligned_cols=41  Identities=20%  Similarity=0.329  Sum_probs=33.4

Q ss_pred             CCCcEEeEEEEEEeC--CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           11 ENGAYYKVIVKMIKG--DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg--d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +.|.||.|+|..+.+  +.+.|.|.....  ++.|+..+|||.+.
T Consensus        30 ~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN--~e~V~~~~Lr~l~~   72 (77)
T 3pnw_C           30 EDNKFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPIQT   72 (77)
T ss_dssp             TTTEEEEEEEEEECTTSSEEEEEETTTCC--EEEEEGGGEECC--
T ss_pred             CCCCEEEEEEEEEeCCCCEEEEEEEcCCC--eEEEeHHHeEECCh
Confidence            478899999999974  589999998665  68899999999875

>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A

Probab=95.89  E-value=0.011  Score=40.96  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=36.9

Q ss_pred             CCcEEeEEEEEEe----CCeEEEEEccCcceeeeeecCccccCCC
Q psy987           12 NGAYYKVIVKMIK----GDFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        12 ngawwkA~Vk~vk----gd~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .|-||.|+|..+.    +..|.|-|.+|+..+-|-|+.+||...+
T Consensus        34 ~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t   78 (102)
T 2f5k_A           34 GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYV   78 (102)
T ss_dssp             SSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESS
T ss_pred             CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCC
Confidence            5789999999988    3489999999999999999999999776

>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0

Probab=95.60  E-value=0.017  Score=39.98  Aligned_cols=41  Identities=10%  Similarity=0.129  Sum_probs=36.5

Q ss_pred             CCcEEeEEEEEEeC---------CeEEEEEccCcceeeeeecCccccCCC
Q psy987           12 NGAYYKVIVKMIKG---------DFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        12 ngawwkA~Vk~vkg---------d~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .+.+|.|+|.++..         ..|.|-|.||...+-+-|+.+||...+
T Consensus        36 g~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~   85 (101)
T 3m9q_A           36 ARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDT   85 (101)
T ss_dssp             CCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECC
T ss_pred             CCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCC
Confidence            46799999999875         379999999999999999999998775

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=95.59  E-value=0.012  Score=38.53  Aligned_cols=41  Identities=22%  Similarity=0.334  Sum_probs=36.0

Q ss_pred             CCcEEeEEEEEEeCC----eEEEEEccCcceeeeeecCccccCCC
Q psy987           12 NGAYYKVIVKMIKGD----FHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        12 ngawwkA~Vk~vkgd----~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .|.||.|+|..+...    .|.|-|.+|+..+-+=|+.+||...+
T Consensus        21 ~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~   65 (76)
T 2lcc_A           21 TQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPL   65 (76)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSS
T ss_pred             CCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccc
Confidence            468999999888754    68999999999999999999998664

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=95.54  E-value=0.024  Score=37.13  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=34.4

Q ss_pred             CCCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           11 ENGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +.|.||.|+|..+.+ +.+.|.|-.+..  .+.|+...|||.+.
T Consensus        40 ~d~~wyRA~I~~~~~~~~~~V~fvDyGn--~e~v~~~~lr~l~~   81 (94)
T 3fdr_A           40 TNGSWYRARVLGTLENGNLDLYFVDFGD--NGDCPLKDLRALRS   81 (94)
T ss_dssp             TTTEEEEEEEEEECTTSCEEEEETTTCC--EEEECGGGCEECCG
T ss_pred             CCCeEEEEEEEEECCCCeEEEEEEcCCC--eEEEEHHHhhhcCH
Confidence            478999999999987 489999998665  58888999998864

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.73  E-value=0.049  Score=36.66  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=30.5

Q ss_pred             CCcEEeEEEEEEeCCeEEEEEccCcceeeeeecCccccCCCC
Q psy987           12 NGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        12 ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +++||.|+|..+.+|.. ++-.-.|--.++.|+..||||.++
T Consensus        35 ~n~WyRakV~~v~~~~~-veVl~~DyGn~~~V~~~~LR~L~~   75 (85)
T 2eqk_A           35 KNQWRRGQIIRMVTDTL-VEVLLYDVGVELVVNVDCLRKLEE   75 (85)
T ss_dssp             SCCEEEEEEEEECSSSE-EEEECTTTCCEEEEETTTEEECCH
T ss_pred             CCeEEEEEEEEecCCCe-EEEEEEccCCEEEEEccccccCCH
Confidence            45899999999999765 443334444468888899999864

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=94.53  E-value=0.031  Score=37.64  Aligned_cols=40  Identities=15%  Similarity=0.190  Sum_probs=33.7

Q ss_pred             CCCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCC
Q psy987           11 ENGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      +.|.||.|+|..+.+ +.+.|.|..+..  .+.|+...||+.+
T Consensus        45 ~d~~wyRA~V~~~~~~~~~~V~fvDyGn--~e~v~~~~Lr~l~   85 (110)
T 2diq_A           45 TNGSWYRARVLGTLENGNLDLYFVDFGD--NGDCPLKDLRALR   85 (110)
T ss_dssp             TTCSCEEEEECCCCSSSCEEEEETTTCC--EEEECGGGCEECC
T ss_pred             CCCeEEEEEEEEECCCCeEEEEEEeCCC--eEEEehHHhhcCc
Confidence            368899999999987 789999998665  5788888898876

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=94.51  E-value=0.086  Score=33.90  Aligned_cols=41  Identities=12%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCCcEEeEEEEEEeCC-eEEEEEccCcceeeeeecCccccCCCCC
Q psy987           11 ENGAYYKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNTN   54 (114)
Q Consensus        11 ~ngawwkA~Vk~vkgd-~~vV~f~~w~~~~~eiv~~~RLrp~n~n   54 (114)
                      ..|.||.|+|..+.|+ .|+|.|.. .  .++.+....|+|.+.+
T Consensus        18 ~D~~yYpA~I~si~~~~~Y~V~F~d-G--~~etvk~~~ikp~~~~   59 (67)
T 3p8d_A           18 SDCRFYPAKVTAVNKDGTYTVKFYD-G--VVQTVKHIHVKAFSKD   59 (67)
T ss_dssp             TTSCEEEEEEEEECTTSEEEEEETT-S--CEEEEEGGGEEECC--
T ss_pred             CCCCEeeEEEEEECCCCeEEEEEeC-C--ceEEEeHHHcccCCcc
Confidence            5788999999999996 89999986 3  3577777777777643

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=93.39  E-value=0.0074  Score=40.31  Aligned_cols=39  Identities=10%  Similarity=0.215  Sum_probs=33.1

Q ss_pred             CCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           12 NGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        12 ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      .|.||.|+|..+.+ +.|.|.|..   -..+.++..+|+|.+.
T Consensus        19 Dg~wY~A~I~~v~~~~~y~V~F~D---Gn~E~V~~s~LrPl~~   58 (81)
T 2ldm_A           19 DSRFYPAKVTAVNKDGTYTVKFYD---GVVQTVKHIHVKAFSK   58 (81)
Confidence            67899999999965 589999986   3578999999999974

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.21  E-value=0.048  Score=36.58  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             CCCcEEeEEEEEEeC----CeEEEEEccCcceeeeeecCccccCC
Q psy987           11 ENGAYYKVIVKMIKG----DFHVVEYLGCQSTFTEIVPPERMRQK   51 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg----d~~vV~f~~w~~~~~eiv~~~RLrp~   51 (114)
                      +.|.||.|+|..++.    ..|.|-|.+|+..+-+=|+.+||+-.
T Consensus        25 ~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~~~   69 (87)
T 2eko_A           25 NEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLDLK   69 (87)
T ss_dssp             CCEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBCGG
T ss_pred             CCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcccc
Confidence            578899999999886    37999999999999999999999644

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=94.09  E-value=0.089  Score=38.17  Aligned_cols=55  Identities=15%  Similarity=0.330  Sum_probs=39.2

Q ss_pred             CCcEEeEEEEEEeCCeEEEEEccCcceeeeeecCccccCCCCCCCCCCCceEEEEEc
Q psy987           12 NGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIE   68 (114)
Q Consensus        12 ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv~~~RLrp~n~n~pm~K~~F~~ie~~   68 (114)
                      .|.||.|+|..+.++.+.|.|..+..  ++.++..+|||.+..-......-.+|.+.
T Consensus        65 d~~wyRa~V~~v~~~~~~V~~vDyG~--~~~v~~~~l~~l~~~~~~~p~~a~~~~La  119 (218)
T 2wac_A           65 DNQWYRAKVERVQGSNATVLYIDYGN--KETLPTNRLAALPPAFSSEKPYATEYALA  119 (218)
T ss_dssp             TCCEEEEEEEEEETTEEEEEETTTCC--EEEEEGGGEEECCGGGSSSCCSEEEEEET
T ss_pred             CCeEEEEEEEEecCCeEEEEEEecCC--eEEEchHHcccCChhhccCCcceeEEEEC
Confidence            68899999999999999999998554  46677788888864211122333455555

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=93.65  E-value=0.15  Score=34.29  Aligned_cols=44  Identities=14%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             eecCCCcEEeEEEEEEeCC-eEEEEEccCcceeeeeecCccccCCCCC
Q psy987            8 VCGENGAYYKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKNTN   54 (114)
Q Consensus         8 v~g~ngawwkA~Vk~vkgd-~~vV~f~~w~~~~~eiv~~~RLrp~n~n   54 (114)
                      -|=..|.||.|+|..+.++ .|+|.|.. .  ..+.+...-|+|.+.+
T Consensus        30 ArW~D~~yYPAkI~sV~~~~~YtV~F~D-G--~~etvk~~~IKp~~~~   74 (85)
T 3qii_A           30 ACWSDCRFYPAKVTAVNKDGTYTVKFYD-G--VVQTVKHIHVKAFSKD   74 (85)
T ss_dssp             EECTTSCEEEEEEEEECTTSEEEEEETT-S--CEEEEEGGGEEECC--
T ss_pred             EEeCCCCEeeEEEEEECCCCeEEEEEeC-C--CeEEecHHHcccCChh
Confidence            3335788999999999995 89999986 3  3567777777777643

>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}

Probab=92.72  E-value=0.15  Score=36.93  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=24.8

Q ss_pred             eEEEEEccCcceeeeeecCccccCCC
Q psy987           27 FHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        27 ~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .|.|-|.+|..+.-+=|+.+||+.-|
T Consensus        78 ~Y~VHY~GWn~rwDEWV~~dRil~~~  103 (136)
T 2k3y_A           78 SFFIHYQGWKSSWDEWVGYDRIRAYN  103 (136)
T ss_dssp             EEEECCTTSCGGGCEEEETTTEEESC
T ss_pred             eEEEEeCCcCCcceeeecHhhhhhCC
Confidence            79999999999999999999999887

>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}

Probab=91.80  E-value=0.022  Score=37.99  Aligned_cols=42  Identities=24%  Similarity=0.282  Sum_probs=36.7

Q ss_pred             CCcEEeEEEEEEeC----CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           12 NGAYYKVIVKMIKG----DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        12 ngawwkA~Vk~vkg----d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      .+.||.|+|..++.    ..|.|-|.+|+..+-+-|+.+||...+.
T Consensus        24 ~~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~   69 (85)
T 2lrq_A           24 GPLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYND   69 (85)
Confidence            45799999988873    4799999999999999999999998763

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=92.49  E-value=0.22  Score=35.46  Aligned_cols=40  Identities=18%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             CCcEEeEEEEEEeC------CeEEEEEccCcceeeeeecCccccCC
Q psy987           12 NGAYYKVIVKMIKG------DFHVVEYLGCQSTFTEIVPPERMRQK   51 (114)
Q Consensus        12 ngawwkA~Vk~vkg------d~~vV~f~~w~~~~~eiv~~~RLrp~   51 (114)
                      .|.||.|+|..+..      -.|.|-|.+|+..+-+=|+.+||.-.
T Consensus        25 d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~~~   70 (133)
T 1wgs_A           25 DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALT   70 (133)
T ss_dssp             TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCCT
T ss_pred             CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcccc
Confidence            57899999988773      26999999999999999999999643

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=91.86  E-value=0.25  Score=33.32  Aligned_cols=40  Identities=15%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             CCcEEeEEEEEEeC----CeEEEEEccCcceeeeeecCccccCC
Q psy987           12 NGAYYKVIVKMIKG----DFHVVEYLGCQSTFTEIVPPERMRQK   51 (114)
Q Consensus        12 ngawwkA~Vk~vkg----d~~vV~f~~w~~~~~eiv~~~RLrp~   51 (114)
                      .|.||.|+|..++.    -.|.|-|.+|+..+-+=|+.+||.-.
T Consensus        35 ~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~l~   78 (92)
T 2ro0_A           35 NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRINLD   78 (92)
T ss_dssp             TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEETT
T ss_pred             CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcccc
Confidence            68899999998884    47899999999999999999999644

>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3

Probab=91.52  E-value=0.3  Score=33.82  Aligned_cols=48  Identities=10%  Similarity=0.056  Sum_probs=36.1

Q ss_pred             eeeee--cCCCcEEeEEEEEEeCCeEEEEEccCcceeeeeecC--ccccCCC
Q psy987            5 EVEVC--GENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPP--ERMRQKN   52 (114)
Q Consensus         5 ~VEv~--g~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv~~--~RLrp~n   52 (114)
                      -+|+.  -.+..+|.|.|.+|.|..+.|.|++|+..|.+.+..  -.|.|..
T Consensus        19 KLEAvD~~~p~~icvATV~~v~g~rl~v~fDGw~~~~D~W~~~dSpdIhPVG   70 (107)
T 1wjq_A           19 KLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVG   70 (107)
T ss_dssp             EEEEECTTCTTCEEEEEEEEECSSCEEEECSSSCGGGCEEECTTCSSCEETT
T ss_pred             EEEEEcCCCCCcEEeEEEEEecCCEEEEEeCCCCCcCCEEEECCCCCcccCc
Confidence            34443  346789999999999999999999999887766443  3455553

>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B

Probab=91.24  E-value=0.43  Score=35.61  Aligned_cols=39  Identities=21%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             CCcEEeEEEEEEe-CCeEEEEEccCcceeeeeecCccccCCC
Q psy987           12 NGAYYKVIVKMIK-GDFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        12 ngawwkA~Vk~vk-gd~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .|.||.|+|..+. ++.+.|.|-.+..  .+.++..+||+.+
T Consensus        78 d~~wyRa~V~~~~~~~~~~V~~vDyGn--~~~v~~~~lr~l~  117 (246)
T 2hqx_A           78 DGEWYRARVEKVESPAKIHVFYIDYGN--REVLPSTRLGTLS  117 (246)
T ss_dssp             TSCEEEEEEEEEEETTEEEEEETTTCC--EEEECGGGEECCC
T ss_pred             CCCEEEEEEEEEcCCCeEEEEEEeCCC--eEEEeHHHhhcCC
Confidence            6889999999997 6899999998554  4677888888776

>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*

Probab=91.07  E-value=0.23  Score=34.73  Aligned_cols=40  Identities=5%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             CcEEeEEEEEEe---CC------eEEEEEccCcceeeeeecCccccCCC
Q psy987           13 GAYYKVIVKMIK---GD------FHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        13 gawwkA~Vk~vk---gd------~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .-+|-|+|.++.   ++      .|.|-|.||...+-+=|+.+||..-|
T Consensus        37 ~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~n   85 (110)
T 3oa6_A           37 RVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDT   85 (110)
T ss_dssp             CCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECC
T ss_pred             cccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCC
Confidence            358999998873   22      49999999999999999999999776

>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3

Probab=90.51  E-value=0.49  Score=32.12  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=38.2

Q ss_pred             eecCCCcEEeEEEEEEeCC-------eEEEEEccCcceeeeeecCccccCCC
Q psy987            8 VCGENGAYYKVIVKMIKGD-------FHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus         8 v~g~ngawwkA~Vk~vkgd-------~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      ++-..|.||.|+|..++..       .|.|-|.+|+...-+=|+.+||...+
T Consensus        23 c~~~dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~   74 (92)
T 2bud_A           23 IRREDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNA   74 (92)
T ss_dssp             EECTTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCH
T ss_pred             EEeCCCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhc
Confidence            4444789999999887742       69999999999999999999998765

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=90.17  E-value=0.53  Score=31.96  Aligned_cols=40  Identities=15%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             CCcEEeEEEEEEeC----CeEEEEEccCcceeeeeecCccccCC
Q psy987           12 NGAYYKVIVKMIKG----DFHVVEYLGCQSTFTEIVPPERMRQK   51 (114)
Q Consensus        12 ngawwkA~Vk~vkg----d~~vV~f~~w~~~~~eiv~~~RLrp~   51 (114)
                      .|.||.|+|..++.    -.|.|-|.+|+..+-|=|+.+||.-.
T Consensus        37 ~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~l~   80 (94)
T 2rnz_A           37 NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRINLD   80 (94)
T ss_dssp             SSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBCSS
T ss_pred             CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcccc
Confidence            67899999998885    47899999999999999999999644

>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}

Probab=89.45  E-value=0.54  Score=34.35  Aligned_cols=41  Identities=20%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             CCCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           11 ENGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        11 ~ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +.|.||.|+|..+.+ +.+.|.|-.+..  ++.++..+||+.+.
T Consensus        78 ~d~~wyRa~V~~~~~~~~~~V~~vDyG~--~~~v~~~~l~~l~~  119 (201)
T 4b9w_A           78 GDGNWYRALVKEILPSGNVKVHFVDYGN--VEEVTTDQLQAILP  119 (201)
T ss_dssp             TTTEEEEEEEEEECTTSCEEEEETTTCC--EEEECGGGEEECCG
T ss_pred             CCCeEEEEEEEEECCCCeEEEEEEccCC--EEEEEHHHhccChH
Confidence            578899999999864 478999987554  57788888998864

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=88.78  E-value=0.71  Score=32.99  Aligned_cols=38  Identities=16%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             CCCcEEeEEEEEEeCC-eEEEEEccCcceeeeeecCccccCCC
Q psy987           11 ENGAYYKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        11 ~ngawwkA~Vk~vkgd-~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      +.|.||.|+|..+.++ .+.|.|-.+..+-.  +  .+||+.+
T Consensus        60 ~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~--v--~~lr~l~   98 (169)
T 3ntk_A           60 EDEVFYRAQIRKVLDDGKCEVHFIDFGNNAV--T--QQFRQLP   98 (169)
T ss_dssp             TTTEEEEEEEEEECSTTCEEEEETTTTEEEE--E--SCEECCC
T ss_pred             CCCcEEEEEEEEECCCCEEEEEEEecCCeEE--h--hhhhccC
Confidence            4688999999999986 49999998665422  4  5788876

>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}

Probab=88.24  E-value=0.75  Score=34.24  Aligned_cols=42  Identities=19%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             cCCCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           10 GENGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        10 g~ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      .+.|.||.|+|..+.+ +.+.|.|-.+..  ++.|+..+||+.+.
T Consensus        77 ~~d~~WyRa~V~~~~~~~~~~V~~vDyGn--~~~v~~~~l~~l~~  119 (226)
T 4b9x_A           77 SGDGNWYRALVKEILPSGNVKVHFVDYGN--VEEVTTDQLQAILP  119 (226)
T ss_dssp             TTTTEEEEEEEEEECSSSEEEEECTTTCC--EEEEEGGGEECCCG
T ss_pred             CCCCeEEEEEEEEECCCCeEEEEEEecCC--EEEEEHHHhccChH
Confidence            3578899999999864 478899987554  46788888888763

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=87.63  E-value=1.1  Score=29.00  Aligned_cols=41  Identities=15%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             eeeecCCCcEEeEEEEEEeCCeEEEEEccCcceeeeeecCcccc
Q psy987            6 VEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMR   49 (114)
Q Consensus         6 VEv~g~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv~~~RLr   49 (114)
                      |=+|-+.|.||+|.|.+...+.++|.|+  |.+ +.-+....|+
T Consensus        22 VL~rw~DG~fYLGtIVd~~~~~ClV~Fe--D~S-~~Wv~~kdi~   62 (69)
T 2xk0_A           22 VFIKCNDGRFYLGTIIDQTSDQYLIRFD--DQS-EQWCEPDKLR   62 (69)
T ss_dssp             EEEECTTSCEEEEEEEEECSSCEEEEET--TCC-EEEECTTTEE
T ss_pred             EEEEecCCCEEEEEEEecCCceEEEEec--CCc-ceeeeHHHHH
Confidence            3367789999999999999999999998  322 3445555554

>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*

Probab=87.45  E-value=0.95  Score=35.54  Aligned_cols=49  Identities=16%  Similarity=0.110  Sum_probs=38.0

Q ss_pred             ceeeee--cCCCcEEeEEEEEEeCCeEEEEEccCcceeeeeecC--ccccCCC
Q psy987            4 LEVEVC--GENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPP--ERMRQKN   52 (114)
Q Consensus         4 l~VEv~--g~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv~~--~RLrp~n   52 (114)
                      +-+|+.  -+++.+|.|.|.++.|+.+.|.|++|+..|-+.+..  -+|.|..
T Consensus       148 MKLEavD~~np~~icvATV~~v~g~rl~v~fDGw~~~~D~W~~~~Sp~I~PvG  200 (265)
T 2r58_A          148 QKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAG  200 (265)
T ss_dssp             CEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEEETTCTTEECTT
T ss_pred             cEEEeccCCCCCCEEEEEEEEecCCEEEEEeCCCCCcCCEEEECCCCCeecCc
Confidence            345554  457889999999999999999999999877666554  4566664

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=85.12  E-value=2.4  Score=26.60  Aligned_cols=29  Identities=17%  Similarity=0.237  Sum_probs=24.1

Q ss_pred             eeeecCCCcEEeEEEEEEeCC--eEEEEEcc
Q psy987            6 VEVCGENGAYYKVIVKMIKGD--FHVVEYLG   34 (114)
Q Consensus         6 VEv~g~ngawwkA~Vk~vkgd--~~vV~f~~   34 (114)
                      |=+|=+.|-||+|.|..|...  +++|.|+.
T Consensus        10 VLarwsDG~fYlGtI~~V~~~~~~clV~F~D   40 (58)
T 4hcz_A           10 VLARWTDGLLYLGTIKKVDSAREVCLVQFED   40 (58)
T ss_dssp             EEEECTTSCEEEEEEEEEETTTTEEEEEETT
T ss_pred             EEEEecCCCEEeEEEEEEecCCCEEEEEEcC
Confidence            446778899999999996655  99999984

>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3

Probab=83.51  E-value=1.3  Score=31.10  Aligned_cols=44  Identities=18%  Similarity=0.113  Sum_probs=34.8

Q ss_pred             ecCCCcEEeEEEEEEeCCeEEEEEccCcc----eeeeeecCccccCCC
Q psy987            9 CGENGAYYKVIVKMIKGDFHVVEYLGCQS----TFTEIVPPERMRQKN   52 (114)
Q Consensus         9 ~g~ngawwkA~Vk~vkgd~~vV~f~~w~~----~~~eiv~~~RLrp~n   52 (114)
                      ..++...|.|.|..+.|..+.|.|++|+.    .+=.-+....|.|..
T Consensus        23 ~~~p~~~~vAtV~~v~g~rl~l~~dG~~~~~~~D~W~~~~s~~I~PvG   70 (127)
T 1wjr_A           23 SQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVG   70 (127)
T ss_dssp             SSCSSCEEEEECCCEETTEEEECBTTCSSCCSSCEEEETTCSSCBCTT
T ss_pred             CCCCCcEEEEEEeeeeCCEEEEEecCCCCCCCCCEeEeCCCCCccccC
Confidence            44578999999999999999999999997    234445566677764

>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A

Probab=83.47  E-value=2  Score=33.19  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=33.8

Q ss_pred             ceeeee--cCCCcEEeEEEEEEeCCeEEEEEccCcceeeeeecC
Q psy987            4 LEVEVC--GENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPP   45 (114)
Q Consensus         4 l~VEv~--g~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv~~   45 (114)
                      +-+|+.  -+++.++.|.|.+|.|+.+.|.|++|+..|.+-+..
T Consensus       176 mKLEavD~~~p~~icvATV~~v~g~rl~v~fDgw~~~~D~W~~~  219 (243)
T 2biv_A          176 MKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKY  219 (243)
T ss_dssp             CEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEEET
T ss_pred             CEEEEEccCCCCeEEEEEEEEecCCEEEEEECCCCCcCCEEEeC
Confidence            345554  457889999999999999999999999877665543

>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*

Probab=82.31  E-value=1.8  Score=31.04  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=21.6

Q ss_pred             eEEEEEccCcceeeeeecCccccCCC
Q psy987           27 FHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        27 ~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      .|.|-|.+|...+-+=|+.+||...+
T Consensus        76 ~Y~VHY~GWn~~WDEWV~e~rvlk~~  101 (130)
T 3e9g_A           76 CFFIHYQGWKSSWDEWVGYDRIRAYN  101 (130)
T ss_dssp             EEEEEETTSCGGGCEEEETTTEECSS
T ss_pred             eEEEEeCCCCCChhhccCHhhhhccC
Confidence            48888888888888888888888765

>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}

Probab=82.23  E-value=2.1  Score=36.01  Aligned_cols=40  Identities=20%  Similarity=0.438  Sum_probs=34.2

Q ss_pred             CCcEEeEEEEEEeC-CeEEEEEccCcceeeeeecCccccCCCC
Q psy987           12 NGAYYKVIVKMIKG-DFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        12 ngawwkA~Vk~vkg-d~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      .|.||.|+|..+.+ +.+.|.|-.+..  .+.|+...|||.+.
T Consensus       424 d~~wyRa~I~~v~~~~~~~V~fvDyGn--~e~v~~~~Lr~l~~  464 (570)
T 3bdl_A          424 DGEWYRARVEKVESPAKIHVFYIDYGN--REVLPSTRLGTLSP  464 (570)
T ss_dssp             TSCEEEEEEEEEEETTEEEEEETTTCC--EEEECGGGEECCCG
T ss_pred             CCCEEEEEEEEEcCCCeEEEEEEeCCC--eEEEEHHHCccCCH
Confidence            68899999999998 899999998665  57788889998874

>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.71  E-value=3.7  Score=26.45  Aligned_cols=29  Identities=17%  Similarity=0.256  Sum_probs=24.5

Q ss_pred             eeeecCCCcEEeEEEEEEe--CCeEEEEEcc
Q psy987            6 VEVCGENGAYYKVIVKMIK--GDFHVVEYLG   34 (114)
Q Consensus         6 VEv~g~ngawwkA~Vk~vk--gd~~vV~f~~   34 (114)
                      |=.|=+.|-||+|.|+.|.  .++++|.|+.
T Consensus        16 VLarWsDGlfYlGtV~kV~~~~~~ClV~FeD   46 (68)
T 2e5p_A           16 VLARWTDGLLYLGTIKKVDSAREVCLVQFED   46 (68)
T ss_dssp             EEEECTTSSEEEEEEEEEETTTTEEEEEETT
T ss_pred             EEEEecCCcEEEeEEEEEecCCcEEEEEEcc
Confidence            4456678999999999999  6799999974

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=80.24  E-value=3  Score=26.74  Aligned_cols=26  Identities=15%  Similarity=0.174  Sum_probs=22.2

Q ss_pred             ecCCCcEEeEEEEEEeC--CeEEEEEcc
Q psy987            9 CGENGAYYKVIVKMIKG--DFHVVEYLG   34 (114)
Q Consensus         9 ~g~ngawwkA~Vk~vkg--d~~vV~f~~   34 (114)
                      |=+-|-+|+|.|+.|..  ..++|.|+.
T Consensus        23 ~wtDGl~Y~gtI~~V~~~~gtC~V~F~D   50 (66)
T 2eqj_A           23 RWSDGLFYLGTIKKINILKQSCFIIFED   50 (66)
T ss_dssp             ECTTSCEEEEEEEEEETTTTEEEEEETT
T ss_pred             EEccCcEEEeEEEEEccCCcEEEEEEcc
Confidence            33679999999999996  699999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	97.17
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.49
d2buda1	88	Putative histone acetyltransferase MOF {Fruit fly	95.44
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	95.3
d2f5ka1	83	Mortality factor 4-like protein 1, MRG15 {Human (H	95.08
d1wjqa_	107	Lethal(3)malignant brain tumor-like 3 protein, L3M	94.54
d1oz2a3	106	Lethal(3)malignant brain tumor-like protein {Human	94.01
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	93.87
d1oi1a1	103	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	91.18
d1oz2a2	108	Lethal(3)malignant brain tumor-like protein {Human	90.85
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	90.56
d1oi1a2	104	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	89.17
d1oz2a1	110	Lethal(3)malignant brain tumor-like protein {Human	88.39
d1wjsa_	127	Lethal(3)malignant brain tumor-like 3 protein, L3M	83.18

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00044  Score=41.41  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             CCCcEEeEEEEEEe--CCeEEEEEccCcceeeeeecCccccCCCC
Q psy987           11 ENGAYYKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        11 ~ngawwkA~Vk~vk--gd~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      +.|.||.|+|..+.  ++.+.|.|..+..  ++.|+...|+|+++
T Consensus        16 ~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn--~e~V~~~~l~~~~~   58 (59)
T d1mhna_          16 EDGCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPIC   58 (59)
T ss_dssp             TTSCEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGCBCTTC
T ss_pred             CCCCEEEEEEEEEcCCCCEEEEEEEeCCC--EEEEEHHHCcCCCC
Confidence            47899999999984  5579999998765  58888889988764

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0029  Score=37.57  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=34.4

Q ss_pred             cCCCcEEeEEEEEEe--CCeEEEEEccCcceeeeeecCccccCCCC
Q psy987           10 GENGAYYKVIVKMIK--GDFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus        10 g~ngawwkA~Vk~vk--gd~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      -+.|.||.|+|..+.  ++.+.|.|.....  .+.++...|||.++
T Consensus        14 ~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn--~e~v~~~~lr~l~~   57 (60)
T d2d9ta1          14 WEDNKFYRAEVEALHSSGMTAVVKFTDYGN--YEEVLLSNIKPVQT   57 (60)
T ss_dssp             TTTCCEEEEEEEEECSSSSEEEEEETTTTE--EEEEEGGGEEECCC
T ss_pred             CCCCCEEEEEEEEEcCCCCEEEEEEECCCC--EEEEcHHHcCcCCC
Confidence            357899999999987  5579999998654  57888999998864

>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Putative histone acetyltransferase MOF
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.44  E-value=0.01  Score=38.65  Aligned_cols=44  Identities=20%  Similarity=0.225  Sum_probs=37.5

Q ss_pred             ecCCCcEEeEEEEEEeC-------CeEEEEEccCcceeeeeecCccccCCC
Q psy987            9 CGENGAYYKVIVKMIKG-------DFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus         9 ~g~ngawwkA~Vk~vkg-------d~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      ..+.|.|+.|+|..++.       ..|.|-|.+|+..+-+=|+..||+..+
T Consensus        20 ~r~Dg~~~~AkIi~~R~~~~~~g~~eYyVHY~g~n~r~DEWV~~~ri~~~~   70 (88)
T d2buda1          20 RREDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNA   70 (88)
T ss_dssp             ECTTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCH
T ss_pred             ECCCCCEeeEEEEEEEecCCCCCceEEEEEecCccchhhhccCHhHhhhhh
Confidence            34468999999988852       479999999999999999999998664

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.013  Score=40.26  Aligned_cols=47  Identities=15%  Similarity=0.189  Sum_probs=39.1

Q ss_pred             eeeecCCCcEEeEEEEEEe--C----CeEEEEEccCcceeeeeecCccccCCC
Q psy987            6 VEVCGENGAYYKVIVKMIK--G----DFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus         6 VEv~g~ngawwkA~Vk~vk--g----d~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      |.|+-..|.||.|+|..+.  +    ..|.|.|.+|+..+-+-|+.+||....
T Consensus        19 ~~v~~~dg~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r~DEWV~~~ri~~~~   71 (133)
T d1wgsa_          19 YLCRRPDSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTK   71 (133)
T ss_dssp             EEEEETTTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCCTT
T ss_pred             EEEEeCCCCEeEEEEEEEEecccCCCeEEEEEccCCccccceecCHHHccccc
Confidence            5666667899999998885  2    258899999999999999999998653

>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Mortality factor 4-like protein 1, MRG15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.013  Score=37.51  Aligned_cols=44  Identities=18%  Similarity=0.267  Sum_probs=37.3

Q ss_pred             ecCCCcEEeEEEEEEe----CCeEEEEEccCcceeeeeecCccccCCC
Q psy987            9 CGENGAYYKVIVKMIK----GDFHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus         9 ~g~ngawwkA~Vk~vk----gd~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      |=..+.+|.|+|.++.    ...|.|-|.||.+.+.+=|+.+||...|
T Consensus        14 c~~~~~lYeAkil~~~~~~~~~~Y~VHy~GWn~~~DeWv~~~ril~~~   61 (83)
T d2f5ka1          14 CFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYV   61 (83)
T ss_dssp             EESSSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESS
T ss_pred             EEECCeeEEeEEEEEEEcCCceEEEEEecccCCccccccChhhcccCC
Confidence            3356789999998884    2369999999999999999999998776

>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.024  Score=37.56  Aligned_cols=48  Identities=10%  Similarity=0.043  Sum_probs=38.5

Q ss_pred             eeeeec--CCCcEEeEEEEEEeCCeEEEEEccCcceeeee--ecCccccCCC
Q psy987            5 EVEVCG--ENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEI--VPPERMRQKN   52 (114)
Q Consensus         5 ~VEv~g--~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~ei--v~~~RLrp~n   52 (114)
                      -+|+.-  ++..+|.|.|.++.|+.+.|.|++|+..+.+.  +...+|.|..
T Consensus        19 KLEavD~~~~~~i~vAtV~~v~g~~l~v~~DG~~~~~d~w~~~~S~~I~PVG   70 (107)
T d1wjqa_          19 KLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVG   70 (107)
T ss_dssp             EEEEECTTCTTCEEEEEEEEECSSCEEEECSSSCGGGCEEECTTCSSCEETT
T ss_pred             EEEEEcCCCCeeEEEEEEEEEECCEEEEEECCCCCCCCEEEECCCCCEecCC
Confidence            345543  37889999999999999999999999887777  4566777764

>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.051  Score=35.62  Aligned_cols=49  Identities=6%  Similarity=0.091  Sum_probs=37.3

Q ss_pred             ceeeee--cCCCcEEeEEEEEEeCCeEEEEEccCcceeeeee--cCccccCCC
Q psy987            4 LEVEVC--GENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIV--PPERMRQKN   52 (114)
Q Consensus         4 l~VEv~--g~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv--~~~RLrp~n   52 (114)
                      +-+|+.  .+++.+|.|.|..+.|..+.|.|++|+..+.+.+  ...+|.|..
T Consensus        32 mklEavd~~~~~~i~vAtV~~v~g~~l~v~~DG~~~~~dfw~~~~S~~I~PvG   84 (106)
T d1oz2a3          32 MKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAG   84 (106)
T ss_dssp             CEEEEECSSSTTCEEEEEEEEECSSEEEEEETTBCGGGCEEEETTCTTEECTT
T ss_pred             CEEEEEcCCCCceEEEEEEEEEECCEEEEEECCCCCCCCEEEECCCCCeeCCC
Confidence            445655  4688899999999999999999999987655544  344566654

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.098  Score=32.67  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=33.7

Q ss_pred             eecCCCcEEeEEEEEEe-CCeEEEEEccCcceeeeeecCccccCCCC
Q psy987            8 VCGENGAYYKVIVKMIK-GDFHVVEYLGCQSTFTEIVPPERMRQKNT   53 (114)
Q Consensus         8 v~g~ngawwkA~Vk~vk-gd~~vV~f~~w~~~~~eiv~~~RLrp~n~   53 (114)
                      ++-+.|.||.|+|..+. ++.+.|.|-....  .+.|+...||+.++
T Consensus        34 a~~~D~~wyRa~V~~~~~~~~~~V~~vDyG~--~~~v~~~~l~~l~~   78 (90)
T d2hqxa1          34 AKFVDGEWYRARVEKVESPAKIHVFYIDYGN--REVLPSTRLGTLSP   78 (90)
T ss_dssp             EECTTSCEEEEEEEEEEETTEEEEEETTTCC--EEEECGGGEECCCG
T ss_pred             EEEcCCCEEEEEEEEeCCCCeEEEEEEeCCC--CEEEEHHHeeECCH
Confidence            33456889999999986 5678899987554  57788888887753

>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.18  E-value=0.19  Score=32.49  Aligned_cols=49  Identities=10%  Similarity=0.007  Sum_probs=36.8

Q ss_pred             ceeeeecC--CCcEEeEEEEEEeCCeEEEEEccCcceeeeee--cCccccCCC
Q psy987            4 LEVEVCGE--NGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIV--PPERMRQKN   52 (114)
Q Consensus         4 l~VEv~g~--ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv--~~~RLrp~n   52 (114)
                      +-+|+.-.  +..+|.|.|.++.|..+.|.|++|+..+.+.+  ...+|.|..
T Consensus        35 mklEavd~~~~~~~~vAtV~~v~g~~~~l~~dG~~~~~dfw~~~~S~~i~PvG   87 (103)
T d1oi1a1          35 MKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVG   87 (103)
T ss_dssp             CEEEEEETTEEEEEEEEEEEEEETTEEEEEETTSCTTCCEEEETTCTTEECTT
T ss_pred             CEEEeEcCCCCCeEEEEEEEEeeCCEEEEEECCCCCcCCEEEECCCCCeecCC
Confidence            44565543  57799999999999999999999998765554  344566664

>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.38  Score=31.23  Aligned_cols=49  Identities=8%  Similarity=0.092  Sum_probs=36.8

Q ss_pred             ceeeeecC--CCcEEeEEEEEEeCCeEEEEEccCcceeeeee--cCccccCCC
Q psy987            4 LEVEVCGE--NGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIV--PPERMRQKN   52 (114)
Q Consensus         4 l~VEv~g~--ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv--~~~RLrp~n   52 (114)
                      +-+|+.--  ++..|.|.|.++.|.-+.|.|++|+..+.+.+  ...+|.|..
T Consensus        36 mkLEavd~~~~~~i~vAtV~~v~g~~~~l~~dg~~~~~d~w~~~~S~~i~PvG   88 (108)
T d1oz2a2          36 MKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVG   88 (108)
T ss_dssp             CEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCGGGCEEECTTCTTEECTT
T ss_pred             CEEEEEcCCCCeEEEEEEEEEEECCEEEEEECCCCCccCEEEECCCCCeecCc
Confidence            44565543  67789999999999999999999998766644  445566654

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.12  Score=31.89  Aligned_cols=40  Identities=15%  Similarity=0.208  Sum_probs=32.9

Q ss_pred             CCCcEEeEEEEEEeCC-eEEEEEccCcceeeeeecCccccCCC
Q psy987           11 ENGAYYKVIVKMIKGD-FHVVEYLGCQSTFTEIVPPERMRQKN   52 (114)
Q Consensus        11 ~ngawwkA~Vk~vkgd-~~vV~f~~w~~~~~eiv~~~RLrp~n   52 (114)
                      +.|.||.|.|..+.++ .+.|.|-.+..  ++.++...|++.+
T Consensus        38 ~d~~wyRa~V~~~~~~~~~~V~~vDyG~--~~~v~~~~l~~l~   78 (97)
T d2diqa1          38 TNGSWYRARVLGTLENGNLDLYFVDFGD--NGDCPLKDLRALR   78 (97)
T ss_dssp             TTCSCEEEEECCCCSSSCEEEEETTTCC--EEEECGGGCEECC
T ss_pred             CCCeEEEEEEEEECCCCEEEEEEEeeCC--EEEEeHHHhhccC
Confidence            4678999999999765 79999998664  4778888898875

>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.52  Score=30.33  Aligned_cols=48  Identities=13%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             ceeeeec--CCCcEEeEEEEEEeCCeEEEEEccCcceeeeee--cCccccCC
Q psy987            4 LEVEVCG--ENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIV--PPERMRQK   51 (114)
Q Consensus         4 l~VEv~g--~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv--~~~RLrp~   51 (114)
                      +-+|+.-  ++..+|.|.|..+.|+.+.|.|++|+..+.+.+  ...+|.|.
T Consensus        37 mkLEavD~~~~~~i~vAtV~~v~g~~l~v~~dg~~~~~dfw~~~~S~~I~Pv   88 (104)
T d1oi1a2          37 MKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPA   88 (104)
T ss_dssp             CEEEEECTTSTTCEEEEEEEEEETTEEEEEETTSCSTTCEEEETTCTTEECT
T ss_pred             CEEEEECCCCCCeEEEEEEEEEECCEEEEEeCCCCCccCEEEECCCCCeecC
Confidence            3456553  367899999999999999999999987655444  33445554

>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.29  Score=31.79  Aligned_cols=48  Identities=13%  Similarity=0.133  Sum_probs=35.3

Q ss_pred             eeeee--cCCCcEEeEEEEEEeCCeEEEEEccCcceeeeee--cCccccCCC
Q psy987            5 EVEVC--GENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIV--PPERMRQKN   52 (114)
Q Consensus         5 ~VEv~--g~ngawwkA~Vk~vkgd~~vV~f~~w~~~~~eiv--~~~RLrp~n   52 (114)
                      -+|+.  .+++..|.|.|..+.|.-+.|.|++|+..+.+.+  ...+|.|..
T Consensus        40 klEavd~~~~~~i~vAtV~~v~g~~l~v~~dg~~~~~dfw~~~~S~~I~PvG   91 (110)
T d1oz2a1          40 KLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAG   91 (110)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEETTEEEEEETTSCGGGCEEEETTCTTEECTT
T ss_pred             EEEEEcCCCCCeEEEEEEEEEECCEEEEEECCCCCCCCEEEECCCCCeecCC
Confidence            44544  3367799999999999999999999997665544  344555553

>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.18  E-value=0.73  Score=30.79  Aligned_cols=49  Identities=10%  Similarity=0.131  Sum_probs=37.3

Q ss_pred             ceeeeecC--CCcEEeEEEEEEeCCeEEEEEccCcceeeee--ecCccccCCC
Q psy987            4 LEVEVCGE--NGAYYKVIVKMIKGDFHVVEYLGCQSTFTEI--VPPERMRQKN   52 (114)
Q Consensus         4 l~VEv~g~--ngawwkA~Vk~vkgd~~vV~f~~w~~~~~ei--v~~~RLrp~n   52 (114)
                      +-+|+.-.  +...|.|.|.++.|.-+.|.|++|+..+.+.  +...+|.|..
T Consensus        18 mKLEavd~~~~~~i~vAtV~~v~g~~l~v~~DG~~~~~dfw~~~~S~~I~PvG   70 (127)
T d1wjsa_          18 MKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVG   70 (127)
T ss_dssp             CEEEEEETTEEEEEEEEEEEEEETTEEEEEETTSCGGGCEEEETTCSSCBCSS
T ss_pred             CEEEEEcCCCCceEEEEEEEEEECCEEEEEeCCCCCCCCEEEECCCCCeecCc
Confidence            34555433  5779999999999999999999999875444  4566777775