Psyllid ID: psy9906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLCSST
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEcccccEEEEEEccc
Coil and Loop (DISEMBL)
MAWQPQEEGLIQILQLLkesqspdnLIQRAVQHKLEqlnthpdfnnYLIFVLTkltsedeptrslsglilknnvrarfyefppgvseFIKQECLsaigdpspliRATVGILITTIAskgdlkswpellptlndmldsqdynvceLLPVLLPILKETLfhhdweikesGILALGAIAEVNKSIGLKLLCSST
Flexible Loop (DISEMBL)
MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLeqlnthpdfNNYLIFVLTKltsedeptrslsglilknnvRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIaskgdlksWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGlkllcsst
Low Complexity Region (SEG)
MAWQPQEEGliqilqllKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLCSST
Disordered region (IsUnstruct)
*********LIQILQLL*********IQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSE****RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLC***
Disordered Region (DISOPRED)
MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLC***
Disordered Region (DISEMBL)
MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLCSST
Disordered Region (DISPRO)
*AWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLCSS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLCSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q8BFY9	898	Transportin-1 OS=Mus musc	yes	N/A	0.743	0.158	0.774	4e-54
Q3SYU7	898	Transportin-1 OS=Bos taur	yes	N/A	0.743	0.158	0.774	4e-54
Q92973	898	Transportin-1 OS=Homo sap	yes	N/A	0.743	0.158	0.774	4e-54
Q99LG2	887	Transportin-2 OS=Mus musc	no	N/A	0.753	0.162	0.722	4e-51
O14787	897	Transportin-2 OS=Homo sap	no	N/A	0.753	0.160	0.722	4e-51
B9FDR3	891	Transportin-1 OS=Oryza sa	yes	N/A	0.753	0.161	0.384	6e-24
B8ARW2	890	Transportin-1 OS=Oryza sa	N/A	N/A	0.753	0.161	0.384	6e-24
Q8H0U4	891	Transportin-1 OS=Arabidop	yes	N/A	0.785	0.168	0.339	7e-22
Q55CQ7	931	Transportin OS=Dictyostel	yes	N/A	0.732	0.150	0.363	2e-21
O14089	910	Importin subunit beta-2 O	yes	N/A	0.706	0.148	0.372	2e-17

>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 123/142 (86%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+GL QILQLLKESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 13  WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 72

Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 73  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 132

Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WP+LLP L  +LDS+DYN CE
Sbjct: 133 NWPDLLPKLCSLLDSEDYNTCE 154

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A (By similarity). In vitro, mediates nuclear import of SRP19 (By similarity) and H2A, H2B, H3 and H4 histones.
Mus musculus (taxid: 10090)

>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 123/142 (86%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+GL QILQLLKESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 13  WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 72

Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 73  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 132

Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WP+LLP L  +LDS+DYN CE
Sbjct: 133 NWPDLLPKLCSLLDSEDYNTCE 154

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones, and SRP19. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.

Bos taurus (taxid: 9913)

>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 123/142 (86%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+GL QILQLLKESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 13  WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 72

Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 73  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 132

Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WP+LLP L  +LDS+DYN CE
Sbjct: 133 NWPDLLPKLCSLLDSEDYNTCE 154

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones, and SRP19. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.

Homo sapiens (taxid: 9606)

>sp|Q99LG2|TNPO2_MOUSE Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1

 Score =  200 bits (509), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 122/144 (84%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           M WQP E+GL Q+LQLLK+SQSP+   QR VQ KL+QLN  PDFNNYLIFVLT+L SEDE
Sbjct: 1   MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDE 60

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A +  FPP V++FIKQECL+ IGD S LIRAT+GILITTIASKG+
Sbjct: 61  PTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGE 120

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L+ WPELLP L ++L+S+DYN CE
Sbjct: 121 LQMWPELLPQLCNLLNSEDYNTCE 144

Probably functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|O14787|TNPO2_HUMAN Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3

 Score =  200 bits (509), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 122/144 (84%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           M WQP E+GL Q+LQLLK+SQSP+   QR VQ KL+QLN  PDFNNYLIFVLT+L SEDE
Sbjct: 1   MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDE 60

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A +  FPP V++FIKQECL+ IGD S LIRAT+GILITTIASKG+
Sbjct: 61  PTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGE 120

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L+ WPELLP L ++L+S+DYN CE
Sbjct: 121 LQMWPELLPQLCNLLNSEDYNTCE 144

Probably functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

>sp|B9FDR3|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           WQPQEEGL +I  LL    SP N  Q  +  +L+  +  PDFNNYL+F+L +   +    
Sbjct: 8   WQPQEEGLREICTLLDAHISP-NSDQARIWQQLQHYSQFPDFNNYLVFLLARGEGKSFEA 66

Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           R  +GL+LKNN+RA F   PP   +++K E L  IG  +  IR+TVG +I+ +     + 
Sbjct: 67  RQAAGLLLKNNLRATFSSMPPASQQYVKSELLPCIGATNKAIRSTVGTVISVLFQIVRVA 126

Query: 123 SWPELLPTLNDMLDSQD-----------YNVCELLP 147
            W EL   L+  LDS D           Y +CE +P
Sbjct: 127 GWIELFQALHQCLDSNDLDHMEGAMDAIYKICEDVP 162

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8ARW2|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           WQPQEEGL +I  LL    SP N  Q  +  +L+  +  PDFNNYL+F+L +   +    
Sbjct: 7   WQPQEEGLREICTLLDAHISP-NSDQARIWQQLQHYSQFPDFNNYLVFLLARGEGKSFEA 65

Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           R  +GL+LKNN+RA F   PP   +++K E L  IG  +  IR+TVG +I+ +     + 
Sbjct: 66  RQAAGLLLKNNLRATFSSMPPASQQYVKSELLPCIGATNKAIRSTVGTVISVLFQIVRVA 125

Query: 123 SWPELLPTLNDMLDSQD-----------YNVCELLP 147
            W EL   L+  LDS D           Y +CE +P
Sbjct: 126 GWIELFQALHQCLDSNDLDHMEGAMDAIYKICEDVP 161

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 12/162 (7%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRA-VQHKLEQLNTHPDFNNYLIFVLTKLTSED 59
           + WQP+++GL +I  LL++  SP +++ ++ +  +L+  +  PDFNNYL+F+L +   + 
Sbjct: 6   VVWQPRDDGLAEICSLLEQQISPSSVVDKSQIWKQLQHFSQFPDFNNYLVFILVRAEGKS 65

Query: 60  EPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119
              R  +GL+LKNN+R  +        ++IK E L  +G     IR TVG +I+ I +  
Sbjct: 66  VEVRQAAGLLLKNNLRGAYPSMTQENQKYIKSELLPCLGAADRNIRTTVGTIISVIVNIE 125

Query: 120 DLKSWPELLPTLNDMLDSQDYN-----------VCELLPVLL 150
            +  W ELLP L   LDS D N           +CE +P +L
Sbjct: 126 GVSGWHELLPALVTCLDSNDLNHMDGAMDALSKICEDIPHVL 167

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the glycine-rich RNA-binding RBG7 and mediates its nuclear import.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55CQ7|TNPO_DICDI Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 3/143 (2%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEP- 61
           W P ++GL Q++ +L  S S    +   ++ +L++ ++ PD+NNYL  +    ++E +P 
Sbjct: 4   WVPNQDGLKQLVYVLNLSNSTSREVHDQIREELDKFHSVPDYNNYLTLIFK--SNELQPH 61

Query: 62  TRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL 121
            RS++GL+LK N++  F + P  V  +IK+E L  + DP   +R TVG +IT +  K   
Sbjct: 62  IRSVAGLVLKTNIKQYFEKMPREVQNYIKREILPVLSDPDASVRHTVGNIITNLIKKSCF 121

Query: 122 KSWPELLPTLNDMLDSQDYNVCE 144
             WPELLP LN  LDS   ++ E
Sbjct: 122 SEWPELLPALNLALDSNSQDLIE 144

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Mediates docking of the substrate-importin complex to distinct nucleoporins.

Dictyostelium discoideum (taxid: 44689)

>sp|O14089|IMB2_SCHPO Importin subunit beta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap104 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W  QE+ L+++ +++K S S ++  + A  + LE+    PD NNYL  +L   T      
Sbjct: 6   WVLQEQVLVELSEVIKNSLSENSQTRNAALNLLEKAKDIPDLNNYLTCILINATELSVSI 65

Query: 63  RSLSGLILKNNVRARFYEFPPGVS--EFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           RS +GL+LKNNVR    E   G+   ++ K   +  + DP  LIR   G +ITTI S+  
Sbjct: 66  RSAAGLLLKNNVRVSSLESGSGLQSLDYTKSTVIRGLCDPEQLIRGISGNVITTIISRWG 125

Query: 121 LKSWPELLPTLNDMLDS 137
           + +WPE+LP L +ML S
Sbjct: 126 ISTWPEVLPQLMEMLSS 142

Required for import of mRNA binding proteins. Binds to nucleoporins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
328788292	899	PREDICTED: transportin-1-like [Apis mell	0.753	0.160	0.840	3e-63
321462461	890	hypothetical protein DAPPUDRAFT_307700 [	0.743	0.159	0.816	2e-62
350399125	933	PREDICTED: transportin-1-like [Bombus im	0.753	0.154	0.833	3e-62
383863719	899	PREDICTED: transportin-1 [Megachile rotu	0.753	0.160	0.819	3e-62
340714413	933	PREDICTED: transportin-1-like [Bombus te	0.753	0.154	0.833	5e-62
345498241	897	PREDICTED: transportin-1 [Nasonia vitrip	0.753	0.160	0.812	7e-62
307177467	979	Transportin-1 [Camponotus floridanus]	0.753	0.147	0.819	2e-61
332027707	962	Transportin-1 [Acromyrmex echinatior]	0.753	0.149	0.812	3e-61
322788156	853	hypothetical protein SINV_04544 [Solenop	0.753	0.168	0.791	2e-60
357625686	897	putative transportin 1 [Danaus plexippus	0.753	0.160	0.791	4e-60

>gi|328788292|ref|XP_392373.4| PREDICTED: transportin-1-like [Apis mellifera] gi|380025817|ref|XP_003696664.1| PREDICTED: transportin-1-like [Apis florea]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 127/144 (88%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAWQPQEEGL QIL LLKESQSPD   QRAVQ KLE+LN  PDFNNYLIFVLTKLTSEDE
Sbjct: 3   MAWQPQEEGLRQILTLLKESQSPDTATQRAVQEKLEELNKFPDFNNYLIFVLTKLTSEDE 62

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A FY+F P V+ FIKQECLSA+GDPSPLIRATVGILITTIASKG+
Sbjct: 63  PTRSLSGLILKNNVKAHFYKFLPEVTNFIKQECLSAVGDPSPLIRATVGILITTIASKGE 122

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L  WPELLP L  MLDSQDYNVCE
Sbjct: 123 LTRWPELLPALCQMLDSQDYNVCE 146

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321462461|gb|EFX73484.1| hypothetical protein DAPPUDRAFT_307700 [Daphnia pulex]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/142 (81%), Positives = 128/142 (90%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W PQE+GL QILQLLKESQSPDN  QRAVQ KLE+LN +PDFNNYLIFVLTKLTSEDEPT
Sbjct: 5   WSPQEDGLCQILQLLKESQSPDNATQRAVQQKLEELNKYPDFNNYLIFVLTKLTSEDEPT 64

Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNVRA F++FP  V++FI+ ECLSAIGDPSPLIRATVGILITTI+S+G+L 
Sbjct: 65  RSLSGLILKNNVRAHFHKFPATVADFIRSECLSAIGDPSPLIRATVGILITTISSRGELA 124

Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WPELLP L  MLDSQDYNVCE
Sbjct: 125 NWPELLPKLCQMLDSQDYNVCE 146

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399125|ref|XP_003485429.1| PREDICTED: transportin-1-like [Bombus impatiens]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 126/144 (87%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAWQPQEEGL QIL LLKESQSPD   QRAVQ KLE+LN  PDFNNYLIFVLTKLTSEDE
Sbjct: 37  MAWQPQEEGLRQILTLLKESQSPDTATQRAVQEKLEELNKFPDFNNYLIFVLTKLTSEDE 96

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A FY+F P V+ FIKQECLSA+GD SPLIRATVGILITTIASKG+
Sbjct: 97  PTRSLSGLILKNNVKAHFYKFLPEVTNFIKQECLSAVGDSSPLIRATVGILITTIASKGE 156

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L  WPELLP L  MLDSQDYNVCE
Sbjct: 157 LTRWPELLPALCQMLDSQDYNVCE 180

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863719|ref|XP_003707327.1| PREDICTED: transportin-1 [Megachile rotundata]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/144 (81%), Positives = 128/144 (88%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAWQPQEEGL QIL LLKESQSPD   QRAVQ KLE+LN  PDFNNYLIFVLTKLTSEDE
Sbjct: 3   MAWQPQEEGLRQILTLLKESQSPDTATQRAVQEKLEELNKFPDFNNYLIFVLTKLTSEDE 62

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A F++F P V+ FIKQECLSA+GDPSPLIRATVGILITT+ASKG+
Sbjct: 63  PTRSLSGLILKNNVKAHFHKFLPEVTSFIKQECLSAVGDPSPLIRATVGILITTVASKGE 122

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L +WPELLP L  MLDS+DYNVCE
Sbjct: 123 LTTWPELLPALCQMLDSEDYNVCE 146

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714413|ref|XP_003395723.1| PREDICTED: transportin-1-like [Bombus terrestris]

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 126/144 (87%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAWQPQEEGL QIL LLKESQSPD   QRAVQ KLE+LN  PDFNNYLIFVLTKLTSEDE
Sbjct: 37  MAWQPQEEGLRQILTLLKESQSPDTATQRAVQGKLEELNKFPDFNNYLIFVLTKLTSEDE 96

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A FY+F P V+ FIKQECLSA+GD SPLIRATVGILITTIASKG+
Sbjct: 97  PTRSLSGLILKNNVKAHFYKFLPEVTNFIKQECLSAVGDSSPLIRATVGILITTIASKGE 156

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L  WPELLP L  MLDSQDYNVCE
Sbjct: 157 LTRWPELLPALCQMLDSQDYNVCE 180

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498241|ref|XP_001606501.2| PREDICTED: transportin-1 [Nasonia vitripennis]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 128/144 (88%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAWQPQEEGL QIL LL+ESQSP+   QRAVQ KLE+LN  PDFNNYLIFVLTKLT+EDE
Sbjct: 3   MAWQPQEEGLRQILTLLRESQSPNTETQRAVQQKLEELNKFPDFNNYLIFVLTKLTTEDE 62

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A F++F P V++FIKQECLSA+GDPSPLIRATVGILITTI SKGD
Sbjct: 63  PTRSLSGLILKNNVKAHFHKFHPEVTDFIKQECLSAVGDPSPLIRATVGILITTITSKGD 122

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L +WPELLP L  MLDSQDYNVCE
Sbjct: 123 LTTWPELLPALCQMLDSQDYNVCE 146

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177467|gb|EFN66594.1| Transportin-1 [Camponotus floridanus]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/144 (81%), Positives = 126/144 (87%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAWQPQEEGL QIL LLKESQSPD   QRAVQ KLE+LN  PDFNNYLIFVLTKLTSEDE
Sbjct: 1   MAWQPQEEGLRQILTLLKESQSPDTATQRAVQQKLEELNKFPDFNNYLIFVLTKLTSEDE 60

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+  F++F P V  FIKQECLSA+GDPSPLIRATVGILITT+ASKG+
Sbjct: 61  PTRSLSGLILKNNVKTYFHKFLPEVIIFIKQECLSAVGDPSPLIRATVGILITTVASKGE 120

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L +WPELLP L  MLDSQDYNVCE
Sbjct: 121 LTTWPELLPALCQMLDSQDYNVCE 144

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027707|gb|EGI67775.1| Transportin-1 [Acromyrmex echinatior]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 126/144 (87%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAWQPQEEGL QIL LLKESQSPD   QRAVQ KLE+LN  PDFNNYLIFVLTKLTSEDE
Sbjct: 1   MAWQPQEEGLRQILTLLKESQSPDTATQRAVQQKLEELNKFPDFNNYLIFVLTKLTSEDE 60

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+  F++F P V  FIKQECLSA+GDPSPLIRATVGILITT+AS+G+
Sbjct: 61  PTRSLSGLILKNNVKTYFHKFLPEVINFIKQECLSAVGDPSPLIRATVGILITTVASRGE 120

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L +WPELLP L  MLDSQDYNVCE
Sbjct: 121 LTTWPELLPALCQMLDSQDYNVCE 144

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788156|gb|EFZ13938.1| hypothetical protein SINV_04544 [Solenopsis invicta]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 124/144 (86%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           MAW P EEGL QIL LLKESQSPD   QRAVQ KLE+LN  PDFNNYLIFVLTKLTSEDE
Sbjct: 42  MAWHPDEEGLRQILTLLKESQSPDTATQRAVQQKLEELNKFPDFNNYLIFVLTKLTSEDE 101

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+  F++F P V  F+KQECLSA+GDPSPLIRATVGILITT+AS+G+
Sbjct: 102 PTRSLSGLILKNNVKTYFHKFLPEVINFVKQECLSAVGDPSPLIRATVGILITTVASRGE 161

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L +WPELLP L  MLDSQDYNVCE
Sbjct: 162 LTTWPELLPALCQMLDSQDYNVCE 185

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625686|gb|EHJ76048.1| putative transportin 1 [Danaus plexippus]

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 127/144 (88%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           M W+P++EGL QIL LLKESQSPD   QRAVQ KLE+LN +PDFNNYLIFVLTKL SE+E
Sbjct: 1   MEWKPEQEGLRQILTLLKESQSPDTATQRAVQQKLEELNKYPDFNNYLIFVLTKLVSEEE 60

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+AR+  F P V+EFIK+ECLSA+GDPSPLIRATVGI+ITTIASKG+
Sbjct: 61  PTRSLSGLILKNNVKARYNSFLPEVAEFIKRECLSAVGDPSPLIRATVGIIITTIASKGE 120

Query: 121 LKSWPELLPTLNDMLDSQDYNVCE 144
           L SWPELLP L  MLDSQDYNVCE
Sbjct: 121 LTSWPELLPALCQMLDSQDYNVCE 144

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
UNIPROTKB|I3LM93	893	TNPO1 "Uncharacterized protein	0.743	0.159	0.725	2.7e-63
UNIPROTKB|F1LQP9	897	Tnpo1 "Protein Tnpo1" [Rattus	0.743	0.158	0.725	2.8e-63
UNIPROTKB|Q3SYU7	898	TNPO1 "Transportin-1" [Bos tau	0.743	0.158	0.725	2.8e-63
UNIPROTKB|Q92973	898	TNPO1 "Transportin-1" [Homo sa	0.743	0.158	0.725	2.8e-63
MGI|MGI:2681523	898	Tnpo1 "transportin 1" [Mus mus	0.743	0.158	0.725	2.8e-63
UNIPROTKB|E1BX26	890	TNPO1 "Uncharacterized protein	0.743	0.159	0.732	7.9e-63
UNIPROTKB|F1NSW3	896	TNPO1 "Uncharacterized protein	0.743	0.158	0.732	8.6e-63
ZFIN|ZDB-GENE-040822-16	889	tnpo2 "transportin 2 (importin	0.753	0.161	0.687	1.1e-62
UNIPROTKB|Q2KI57	499	TNPO2 "Uncharacterized protein	0.753	0.288	0.680	1.1e-60
FB|FBgn0024921	893	Trn "Transportin" [Drosophila	0.753	0.161	0.666	6e-59

UNIPROTKB|I3LM93 TNPO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 537 (194.1 bits), Expect = 2.7e-63, Sum P(2) = 2.7e-63
 Identities = 103/142 (72%), Positives = 116/142 (81%)

Query:     3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
             W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct:     8 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 67

Query:    63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
             RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct:    68 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 127

Query:   123 SWPELLPTLNDMLDSQDYNVCE 144
             +WP+LLP L  +LDS+DYN CE
Sbjct:   128 NWPDLLPKLCSLLDSEDYNTCE 149

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F1LQP9 Tnpo1 "Protein Tnpo1" [Rattus norvegicus (taxid:10116)]

 Score = 537 (194.1 bits), Expect = 2.8e-63, Sum P(2) = 2.8e-63
 Identities = 103/142 (72%), Positives = 116/142 (81%)

Query:     3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
             W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct:    12 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 71

Query:    63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
             RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct:    72 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 131

Query:   123 SWPELLPTLNDMLDSQDYNVCE 144
             +WP+LLP L  +LDS+DYN CE
Sbjct:   132 NWPDLLPKLCSLLDSEDYNTCE 153

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|Q3SYU7 TNPO1 "Transportin-1" [Bos taurus (taxid:9913)]

 Score = 537 (194.1 bits), Expect = 2.8e-63, Sum P(2) = 2.8e-63
 Identities = 103/142 (72%), Positives = 116/142 (81%)

Query:     3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
             W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct:    13 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 72

Query:    63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
             RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct:    73 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 132

Query:   123 SWPELLPTLNDMLDSQDYNVCE 144
             +WP+LLP L  +LDS+DYN CE
Sbjct:   133 NWPDLLPKLCSLLDSEDYNTCE 154

GO:0005737 "cytoplasm" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|Q92973 TNPO1 "Transportin-1" [Homo sapiens (taxid:9606)]

 Score = 537 (194.1 bits), Expect = 2.8e-63, Sum P(2) = 2.8e-63
 Identities = 103/142 (72%), Positives = 116/142 (81%)

Query:     3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
             W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct:    13 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 72

Query:    63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
             RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct:    73 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 132

Query:   123 SWPELLPTLNDMLDSQDYNVCE 144
             +WP+LLP L  +LDS+DYN CE
Sbjct:   133 NWPDLLPKLCSLLDSEDYNTCE 154

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=TAS

GO:0008139 "nuclear localization sequence binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0000060 "protein import into nucleus, translocation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

MGI|MGI:2681523 Tnpo1 "transportin 1" [Mus musculus (taxid:10090)]

 Score = 537 (194.1 bits), Expect = 2.8e-63, Sum P(2) = 2.8e-63
 Identities = 103/142 (72%), Positives = 116/142 (81%)

Query:     3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
             W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct:    13 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 72

Query:    63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
             RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct:    73 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 132

Query:   123 SWPELLPTLNDMLDSQDYNVCE 144
             +WP+LLP L  +LDS+DYN CE
Sbjct:   133 NWPDLLPKLCSLLDSEDYNTCE 154

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E1BX26 TNPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 542 (195.9 bits), Expect = 7.9e-63, Sum P(2) = 7.9e-63
 Identities = 104/142 (73%), Positives = 117/142 (82%)

Query:     3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
             W+P E+G        KESQSPD   QRAVQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct:     5 WKPDEQGLQQILQLLKESQSPDTTTQRAVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64

Query:    63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
             RSLSGLILKNNV+A F+ FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct:    65 RSLSGLILKNNVKAHFHNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124

Query:   123 SWPELLPTLNDMLDSQDYNVCE 144
             +WPELLP L  +LDS+DYN CE
Sbjct:   125 NWPELLPKLCSLLDSEDYNTCE 146

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|F1NSW3 TNPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 542 (195.9 bits), Expect = 8.6e-63, Sum P(2) = 8.6e-63
 Identities = 104/142 (73%), Positives = 117/142 (82%)

Query:     3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
             W+P E+G        KESQSPD   QRAVQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct:     2 WKPDEQGLQQILQLLKESQSPDTTTQRAVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 61

Query:    63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
             RSLSGLILKNNV+A F+ FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct:    62 RSLSGLILKNNVKAHFHNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 121

Query:   123 SWPELLPTLNDMLDSQDYNVCE 144
             +WPELLP L  +LDS+DYN CE
Sbjct:   122 NWPELLPKLCSLLDSEDYNTCE 143

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

ZFIN|ZDB-GENE-040822-16 tnpo2 "transportin 2 (importin 3, karyopherin beta 2b)" [Danio rerio (taxid:7955)]

 Score = 534 (193.0 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 99/144 (68%), Positives = 118/144 (81%)

Query:     1 MAWQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
             M WQP E+G        ++SQSP+   QRAVQ KLEQLN  PDFNNYLIFVLT+L +EDE
Sbjct:     1 MEWQPDEQGLQQVLQLLRDSQSPNTATQRAVQQKLEQLNQFPDFNNYLIFVLTRLKTEDE 60

Query:    61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
             PTRSLSGLILKNNV+  +  FPP V+ FIKQECL+ IGDPSPLIRAT+GILITTI++KG+
Sbjct:    61 PTRSLSGLILKNNVKVHYQNFPPAVAHFIKQECLNNIGDPSPLIRATIGILITTISTKGE 120

Query:   121 LKSWPELLPTLNDMLDSQDYNVCE 144
             L++WPELLP L +MLDS+DYN+CE
Sbjct:   121 LQTWPELLPQLCNMLDSEDYNICE 144

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q2KI57 TNPO2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 510 (184.6 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 98/144 (68%), Positives = 115/144 (79%)

Query:     1 MAWQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
             M WQP E+G        K+SQSP+   QR VQ KL+QLN  PDFNNYLIFVLT+L SEDE
Sbjct:     1 MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDE 60

Query:    61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
             PTRSLSGLILKNNV+A +  FPP V++FIKQECL+ IGD S LIRAT+GILITTIASKG+
Sbjct:    61 PTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGE 120

Query:   121 LKSWPELLPTLNDMLDSQDYNVCE 144
             L+ WPELLP L ++L+S+DYN CE
Sbjct:   121 LQMWPELLPQLCNLLNSEDYNTCE 144

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

FB|FBgn0024921 Trn "Transportin" [Drosophila melanogaster (taxid:7227)]

 Score = 497 (180.0 bits), Expect = 6.0e-59, Sum P(2) = 6.0e-59
 Identities = 96/144 (66%), Positives = 110/144 (76%)

Query:     1 MAWQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
             M W+PQ EG        KESQSPD   Q AVQ KLE+ N +PDFNNYLI+VLTKL +EDE
Sbjct:     1 MTWEPQGEGLQQIIAILKESQSPDTATQMAVQMKLEEFNRYPDFNNYLIYVLTKLKTEDE 60

Query:    61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
             PTRSLSGLILKNN+R       P + E+IK ECL A+GD SPLIRATVGILITTIAS G 
Sbjct:    61 PTRSLSGLILKNNIRMHGTTLQPEIVEYIKHECLQAVGDSSPLIRATVGILITTIASNGG 120

Query:   121 LKSWPELLPTLNDMLDSQDYNVCE 144
             L +WP+LLP+L +MLD+QDYNVCE
Sbjct:   121 LHNWPQLLPSLCEMLDNQDYNVCE 144

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0005643 "nuclear pore" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BFY9	TNPO1_MOUSE	No assigned EC number	0.7746	0.7434	0.1581	yes	N/A
Q3SYU7	TNPO1_BOVIN	No assigned EC number	0.7746	0.7434	0.1581	yes	N/A
Q92973	TNPO1_HUMAN	No assigned EC number	0.7746	0.7434	0.1581	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
pfam03810	71	pfam03810, IBN_N, Importin-beta N-terminal domain	8e-10
smart00913	67	smart00913, IBN_N, Importin-beta N-terminal domain	2e-07
COG5215	858	COG5215, KAP95, Karyopherin (importin) beta [Intra	8e-05
COG5657	947	COG5657, CSE1, CAS/CSE protein involved in chromos	4e-04

>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain

 Score = 52.6 bits (127), Expect = 8e-10
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 35 LEQLN-THPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF--YEFPPGVSEFIKQ 91
          LEQ     P F + L+ +L+  TS D   R L+ L LKN +   +     PP   E I+ 
Sbjct: 5  LEQFEKQDPGFWSKLLQILSD-TSSDLQVRQLAALYLKNLITRHWNQLSLPPEEKEQIRN 63

Query: 92 ECLSAIGD 99
            L+ +G 
Sbjct: 64 NLLNLLGS 71

Length = 71

>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 32 QHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91
          + +LEQ    P F   L+ +L    SED+  R L+ + LKN +  R+   P    E IK 
Sbjct: 2  EKQLEQFQKSPGFWLLLLEILA--NSEDQYVRQLAAITLKNKITRRWSSLPEEEKEEIKN 59

Query: 92 ECLSAIGD 99
            L  +  
Sbjct: 60 SLLELLLS 67

Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Length = 67

>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion]

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 18/139 (12%)

Query: 12  QILQLLKESQ-SPDNLIQRAVQHKLEQLNTHPDFNNY---LIFVLTKLTSEDEPTRSLSG 67
           +   L K    SPD   +   + +L +L +  DF  +   L+ VL  L S D+  R ++G
Sbjct: 5   EFRCLGKNHVLSPDPNARLRAEAQLLELQS-GDFEQFISLLVQVLCDLNSNDQ-LRMVAG 62

Query: 68  LILKNNVRA-----------RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116
           LILKN++ A           R+        E +K   L A+  P P        L+  IA
Sbjct: 63  LILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIA 122

Query: 117 SKGDLKS-WPELLPTLNDM 134
                 S WP L+  +   
Sbjct: 123 RMELPNSLWPGLMEEMVRN 141

Length = 858

>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 7/152 (4%)

Query: 10  LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
            + +++ L  +QSPD    +  + +L Q      F    +  +          R  + + 
Sbjct: 3   DLPVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGF-ALKLLSINLSAFNSMSLRWAALIQ 61

Query: 70  LKNNVRARFYE-----FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW 124
            KN +   + E       P  +  I+ E  S I   S  ++    + ++ IA       W
Sbjct: 62  FKNYIDKHWREENGNSILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEW 121

Query: 125 PELLPTLNDMLDSQDYNVCE-LLPVLLPILKE 155
           P L+P L  +L  +D    E  L VL  I K 
Sbjct: 122 PTLVPDLLSLLSEKDMVTNENSLRVLHHIFKR 153

Length = 947

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG2023|consensus	885		99.94
KOG2171|consensus	1075		99.94
KOG1991|consensus	1010		99.93
KOG1241|consensus	859		99.9
KOG2274|consensus	1005		99.89
KOG1992|consensus	960		99.88
KOG1993|consensus	978		99.88
COG5656	970	SXM1 Importin, protein involved in nuclear import	99.82
COG5657	947	CSE1 CAS/CSE protein involved in chromosome segreg	99.81
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.73
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	99.6
PF03810	77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.6
KOG2020|consensus	1041		99.48
KOG1241|consensus	859		98.9
KOG2021|consensus	980		98.85
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.69
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.51
KOG2022|consensus	982		98.41
KOG1410|consensus	1082		98.14
PRK09687	280	putative lyase; Provisional	98.03
KOG2081|consensus	559		97.94
PRK09687	280	putative lyase; Provisional	97.67
KOG2023|consensus	885		97.52
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.45
KOG1824|consensus	1233		97.34
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.32
KOG2171|consensus	1075		97.23
PTZ00429	746	beta-adaptin; Provisional	96.91
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.79
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.7
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.53
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.47
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.3
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.1
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.08
PTZ00429	746	beta-adaptin; Provisional	95.81
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.65
KOG0166|consensus	514		95.64
KOG2956|consensus	516		95.37
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.24
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.23
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.18
KOG1242|consensus	569		94.85
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.57
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.46
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.2
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.06
TIGR02270	410	conserved hypothetical protein. Members are found	93.84
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	93.59
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.56
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	93.55
COG1413	335	FOG: HEAT repeat [Energy production and conversion	93.41
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.84
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.74
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.72
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.54
TIGR02270	410	conserved hypothetical protein. Members are found	92.54
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	91.44
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	91.15
COG1413	335	FOG: HEAT repeat [Energy production and conversion	90.54
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.96
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	89.18
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	88.89
KOG2062|consensus	929		88.84
KOG1059|consensus	877		88.81
KOG0166|consensus	514		88.71
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	88.47
KOG1060|consensus	968		88.1
KOG0211|consensus	759		87.86
KOG1242|consensus	569		87.7
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	87.2
KOG1824|consensus	1233		87.06
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	86.25
KOG1949|consensus	1005		85.52
KOG1061|consensus	734		85.31
KOG1943|consensus	1133		85.17
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	84.95
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	84.04
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	83.8
KOG1060|consensus	968		82.81
KOG0213|consensus	1172		81.75
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	81.38
KOG0212|consensus	675		80.7

>KOG2023|consensus

Probab=99.94  E-value=1.5e-27  Score=208.91  Aligned_cols=156  Identities=59%  Similarity=0.951  Sum_probs=152.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906           1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE   80 (191)
Q Consensus         1 ~~~~p~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~   80 (191)
                      |.|+|+++.++++.++|++++|||.++|+.+...|+++...|+|..||.+|+...++.+..+|.+||++|||.++.+|..
T Consensus         3 ~~w~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~   82 (885)
T KOG2023|consen    3 MTWQPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNS   82 (885)
T ss_pred             CCCcccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccC
Confidence            89999999999999999999999999999999999999999999999999998888889999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      ++++++.+||+.++.++.++++.||...+.+|..|+..++...||+++|.|.+++.+++.+++|||+..|+.|||+
T Consensus        83 ~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED  158 (885)
T KOG2023|consen   83 IPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICED  158 (885)
T ss_pred             CChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999983

>KOG2171|consensus

Probab=99.94  E-value=2.6e-25  Score=204.17  Aligned_cols=170  Identities=28%  Similarity=0.372  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      +...|.+++.+.++|||++|++||+.|+.....+.....|.+++.  ++.++++||+|++++|+.+.++|+.++++.|+.
T Consensus         2 ~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~--~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s   79 (1075)
T KOG2171|consen    2 DSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILA--TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS   79 (1075)
T ss_pred             chhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            357899999999999999999999999987776778888888885  678999999999999999999999999999999


Q ss_pred             HHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh------------
Q psy9906          89 IKQECLSAIGD-PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE------------  155 (191)
Q Consensus        89 ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e------------  155 (191)
                      ||+.||.++.. +.+.||+++|++|+.||+.+.|+.|||+++.|++.+.++|+..+|.++++|..+-+            
T Consensus        80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~  159 (1075)
T KOG2171|consen   80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD  159 (1075)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH
Confidence            99999998775 78999999999999999999999999999999999999999999999999865554            


Q ss_pred             -------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 -------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 -------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                             .+.+++-.+|.++++|+++++...+
T Consensus       160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~  191 (1075)
T KOG2171|consen  160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE  191 (1075)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence                   2334455599999999999998885

>KOG1991|consensus

Probab=99.93  E-value=3.8e-25  Score=200.48  Aligned_cols=148  Identities=25%  Similarity=0.373  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC--------
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE--------   80 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~--------   80 (191)
                      +.+.+.++|.++.+||+++|+.||++|++++++|||...|++|.. ..+.+.+|||.|+|||||+|.++|+.        
T Consensus         2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~-~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~   80 (1010)
T KOG1991|consen    2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIM-DDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF   80 (1010)
T ss_pred             ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence            367899999999999999999999999999999999999999997 46789999999999999999999975        


Q ss_pred             -CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906          81 -FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL  157 (191)
Q Consensus        81 -i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l  157 (191)
                       +.+++|..||++|++.+...+..+|.++..|+..|...|+|++||++++.+..++++++.+...+|+.||..+++.+
T Consensus        81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y  158 (1010)
T KOG1991|consen   81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY  158 (1010)
T ss_pred             CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence             67999999999999999999999999999999999999999999999999999999999999999999998888754

>KOG1241|consensus

Probab=99.90  E-value=2e-23  Score=185.24  Aligned_cols=169  Identities=25%  Similarity=0.397  Sum_probs=145.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh-----------hhh
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR-----------ARF   78 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~-----------~~W   78 (191)
                      ++.++|..++|||+++|+.||.+|++++.+  |.|...|..++. +.+.....|++||+.|||.+.           .+|
T Consensus         2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~-n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW   80 (859)
T KOG1241|consen    2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLA-NDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW   80 (859)
T ss_pred             cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHh-ccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence            567899999999999999999999999873  667777888886 466788999999999999996           489


Q ss_pred             cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCcc-ccchhhhHHHHHhhh
Q psy9906          79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDYN-VCELLPVLLPILKET  156 (191)
Q Consensus        79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~~-~~~~~l~~L~~l~e~  156 (191)
                      ..++.+.|++||++++..|..+.+...+.+++||+.||..| +.+.||+|++.|+..+.++.+. .+++.+.++.|+|++
T Consensus        81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~  160 (859)
T KOG1241|consen   81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED  160 (859)
T ss_pred             HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999 5589999999999999877544 789999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHhhhhhhhc
Q psy9906         157 LFHHDWEIKESGILALGAIAEVNKSIG  183 (191)
Q Consensus       157 l~~~~~~~r~~~i~~~~ai~~~~~~~~  183 (191)
                      + +++ .....+=.++.||+.|+.+.+
T Consensus       161 i-~pe-vl~~~sN~iLtaIv~gmrk~e  185 (859)
T KOG1241|consen  161 I-DPE-VLEQQSNDILTAIVQGMRKEE  185 (859)
T ss_pred             C-CHH-HHHHHHhHHHHHHHhhccccC
Confidence            7 333 222233357889999988764

>KOG2274|consensus

Probab=99.89  E-value=5.8e-23  Score=184.87  Aligned_cols=146  Identities=25%  Similarity=0.353  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC---------
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE---------   80 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~---------   80 (191)
                      -+.++++|.+++|||+++|.+||.+|+++...++|..+|.+++. +...+.+.||+|.++||++|.+||+.         
T Consensus         3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~-~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~   81 (1005)
T KOG2274|consen    3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAA-NKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL   81 (1005)
T ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHh-CcccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence            35789999999999999999999999999999999999999996 46678899999999999999999986         


Q ss_pred             -CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          81 -FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        81 -i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                       .+++.|..||+.+++++.+++.++|+.++.+|+.||..|||+.||+++|.+..+++++|.+..+++|.+|..+.++
T Consensus        82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~e  158 (1005)
T KOG2274|consen   82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDE  158 (1005)
T ss_pred             cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHH
Confidence             4689999999999999999999999999999999999999999999999999999999999999999999777653

>KOG1992|consensus

Probab=99.88  E-value=3.2e-22  Score=178.77  Aligned_cols=147  Identities=20%  Similarity=0.286  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-------
Q psy9906           8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-------   80 (191)
Q Consensus         8 ~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-------   80 (191)
                      ++++++.+.|.++++||+++||.||..|++.+.+++|...++.++. ..+.+.++|..|+++|||+|+++|..       
T Consensus         2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~-~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~   80 (960)
T KOG1992|consen    2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVA-NGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK   80 (960)
T ss_pred             ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHh-ccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence            5689999999999999999999999999999999999999999997 46679999999999999999999964       


Q ss_pred             CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      +.+++|+.||..|+.+|.+++..|..+++++++.|+++|||+.||+|+|+|...++++|.++..+++.+-..+..
T Consensus        81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk  155 (960)
T KOG1992|consen   81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK  155 (960)
T ss_pred             cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            778999999999999999999999999999999999999999999999999999999999998888888754433

>KOG1993|consensus

Probab=99.88  E-value=5.1e-22  Score=176.99  Aligned_cols=142  Identities=23%  Similarity=0.406  Sum_probs=129.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-----CChhHHH
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-----FPPGVSE   87 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-----i~~~~k~   87 (191)
                      +++.|+++.|||..++|.||++|++.+++|||...|..|+. +.+.+.++|-+|.++|||.|.++|++     +++++|.
T Consensus         2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l-~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~   80 (978)
T KOG1993|consen    2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFL-SKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKD   80 (978)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHh-ccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHH
Confidence            57899999999999999999999999999999999999997 46778999999999999999999986     8999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC----CccccchhhhHHHHHhh
Q psy9906          88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ----DYNVCELLPVLLPILKE  155 (191)
Q Consensus        88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~----~~~~~~~~l~~L~~l~e  155 (191)
                      .||.+++....++++.+..+.|.+++.|||.|||.+||+|+|+|.+.+++.    |....+..+.+|-++..
T Consensus        81 ~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK  152 (978)
T KOG1993|consen   81 FIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK  152 (978)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876    65556666666644433

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.4e-19  Score=159.21  Aligned_cols=144  Identities=16%  Similarity=0.232  Sum_probs=130.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC---------C
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE---------F   81 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~---------i   81 (191)
                      +++++++.+++++|+++|+.||+.|++++++|||..++++++. ..+.+.++|+.|++||||.|.+.|+.         .
T Consensus         3 ~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s-~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~De   81 (970)
T COG5656           3 EELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICS-KDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADE   81 (970)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHh-hccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcc
Confidence            6789999999999999999999999999999999999999996 46689999999999999999999987         3


Q ss_pred             ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      .++.|+.++++++..+..++...|..+..++..|...||| +.|| ++|...+++.+++.++...|+.|+-.+++.
T Consensus        82 k~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfka  156 (970)
T COG5656          82 KSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKA  156 (970)
T ss_pred             cHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence            3466666666777777778999999999999999999998 8999 999999999999999999999999888874

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]

Probab=99.81  E-value=3.9e-19  Score=160.61  Aligned_cols=142  Identities=21%  Similarity=0.269  Sum_probs=127.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-----CChhHHH
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-----FPPGVSE   87 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-----i~~~~k~   87 (191)
                      .+..+....++|+..+|.||+.|+++++++||..-|..|.. +.+.+.++|+.|.++|||+|.++|..     +.++++.
T Consensus         6 vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~-~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v   84 (947)
T COG5657           6 VVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINL-SAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENV   84 (947)
T ss_pred             HHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHh-ccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch
Confidence            45566788899999999999999999999999999999987 46679999999999999999999986     6677777


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      .||..++.++.+++..+.-+.|.+++-||+.|||++||+|+|+|...+++.|.++.++.+.++-.+.+
T Consensus        85 ~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk  152 (947)
T COG5657          85 LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFK  152 (947)
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence            99999999999988888889999999999999999999999999999999888888888877744444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.73  E-value=5.4e-17  Score=141.34  Aligned_cols=144  Identities=23%  Similarity=0.275  Sum_probs=122.6

Q ss_pred             HHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCh---HHHHHHHHhhhCCCChhHHhHHHHHHHHhhh-----------h
Q psy9906          12 QILQLLKE-SQSPDNLIQRAVQHKLEQLNTHPDF---NNYLIFVLTKLTSEDEPTRSLSGLILKNNVR-----------A   76 (191)
Q Consensus        12 ~l~~lL~~-~~s~d~~~r~~AE~~L~~~~~~~~~---~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~-----------~   76 (191)
                      ++.++.++ .+|||++.|..||.+|++++. .||   ...+.+.+++ -+..++.|+.|++.|||.+.           +
T Consensus         5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~-~dF~qf~~ll~qvl~d-~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q   82 (858)
T COG5215           5 EFRCLGKNHVLSPDPNARLRAEAQLLELQS-GDFEQFISLLVQVLCD-LNSNDQLRMVAGLILKNSLHANDPELQKGCSQ   82 (858)
T ss_pred             HHHHHHhcccCCCCCCccccHHHHHHHhcc-ccHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence            44555555 389999999999999999987 565   4456677763 55688999999999999996           4


Q ss_pred             hhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCc-cccchhhhHHHHHh
Q psy9906          77 RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDY-NVCELLPVLLPILK  154 (191)
Q Consensus        77 ~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~-~~~~~~l~~L~~l~  154 (191)
                      +|..++++.|++||...+.+|.++.+++.+.+++.++.||+.| +...||+|+..++..+..+.+ +.+..++-++++.|
T Consensus        83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c  162 (858)
T COG5215          83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC  162 (858)
T ss_pred             hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999 558899999999999987644 45666777889999


Q ss_pred             hhc
Q psy9906         155 ETL  157 (191)
Q Consensus       155 e~l  157 (191)
                      |..
T Consensus       163 es~  165 (858)
T COG5215         163 ESE  165 (858)
T ss_pred             hcc
Confidence            854

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=99.60  E-value=1.6e-14  Score=127.37  Aligned_cols=150  Identities=17%  Similarity=0.308  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      +..-+-++......||+..+++|++.|.+|+..|+.|.-.-+|+.  .+..++.+..|..+|.+.|+.+|.-++++.|..
T Consensus        12 diallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~--~S~~pqskyiALs~LdklIttkWkllp~~~r~G   89 (1053)
T COG5101          12 DIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILN--NSKLPQSKYIALSLLDKLITTKWKLLPEGMRQG   89 (1053)
T ss_pred             CHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHh--cccCcchhhhHHHHHHHHHHhhhhhCCcHHHHH
Confidence            455566777888899999999999999999999999999999996  567888999999999999999999999999999


Q ss_pred             HHHHHHHhhCC--CCHHHH-------HHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906          89 IKQECLSAIGD--PSPLIR-------ATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH  159 (191)
Q Consensus        89 ik~~ll~~l~~--~~~~ir-------~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~  159 (191)
                      ||+.+++.+.+  ++..+|       +++-..+..|++.|||.+||+++|+|++.-+ .+.+.|+..|.+|+.+.|.+|+
T Consensus        90 iRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFd  168 (1053)
T COG5101          90 IRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFD  168 (1053)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHh
Confidence            99999998764  444444       5677889999999999999999999999766 5778999999999999999887


Q ss_pred             Cc
Q psy9906         160 HD  161 (191)
Q Consensus       160 ~~  161 (191)
                      .+
T Consensus       169 fS  170 (1053)
T COG5101         169 FS  170 (1053)
T ss_pred             cc
Confidence            64

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope

Probab=99.60  E-value=4.9e-15  Score=99.02  Aligned_cols=67  Identities=28%  Similarity=0.521  Sum_probs=62.9

Q ss_pred             HHHHHHHhhcC-CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc--------CCChhHHHHHHHHHHHhhC
Q psy9906          31 VQHKLEQLNTH-PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY--------EFPPGVSEFIKQECLSAIG   98 (191)
Q Consensus        31 AE~~L~~~~~~-~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~--------~i~~~~k~~ik~~ll~~l~   98 (191)
                      ||++|++++.+ |+|+.+|+.++. +++.+..+|++|+++|||.|+++|.        .+++++|..||+.|++.|.
T Consensus         1 AE~~L~~~~~~~p~~~~~l~~il~-~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~   76 (77)
T PF03810_consen    1 AEQQLKQFQKQNPGFWQYLLQILS-SNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL   76 (77)
T ss_dssp             HHHHHHHHHHSCTCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence            89999999999 999999999996 3677999999999999999999999        8999999999999999874

Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....

>KOG2020|consensus

Probab=99.48  E-value=8.2e-13  Score=123.81  Aligned_cols=151  Identities=21%  Similarity=0.336  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906           8 EGLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV   85 (191)
Q Consensus         8 ~~~~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~   85 (191)
                      ..-.++++++...++|  +++.|.+|++.+.+++..|+.+.....|+.  .+..+.+|.+|.-+|.+.|+.+|+.++.+.
T Consensus         7 ~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~--~s~~~~~k~f~Lqlle~vik~~W~~~~~~~   84 (1041)
T KOG2020|consen    7 KLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILK--LSTNPILKYFALQLLENVIKFRWNSLPVEE   84 (1041)
T ss_pred             hHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHh--ccCCchhheeeHHHHHHHHHHhcccCCccc
Confidence            4456788888888887  899999999999999999998888888886  346778999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCC--C-------CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          86 SEFIKQECLSAIGD--P-------SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        86 k~~ik~~ll~~l~~--~-------~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      |..+|+.+++.+..  +       .+.++++++.+++.|+++|||+.||+++|++.+.... ++..++..|.+++.+.|+
T Consensus        85 r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsEd  163 (1041)
T KOG2020|consen   85 RVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT-SETVCELSMIILLLLSEE  163 (1041)
T ss_pred             cHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc-CcccchHHHHHHHHHHHH
Confidence            99999999997642  1       3578899999999999999999999999999998884 567899999999999999


Q ss_pred             cCCCc
Q psy9906         157 LFHHD  161 (191)
Q Consensus       157 l~~~~  161 (191)
                      +|+.+
T Consensus       164 vf~~s  168 (1041)
T KOG2020|consen  164 VFDFS  168 (1041)
T ss_pred             Hhccc
Confidence            88764

>KOG1241|consensus

Probab=98.90  E-value=1.8e-08  Score=90.89  Aligned_cols=175  Identities=19%  Similarity=0.300  Sum_probs=130.8

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHH---hhc----CCChHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCC
Q psy9906          13 ILQLLKESQS--PDNLIQRAVQHKLEQ---LNT----HPDFNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFP   82 (191)
Q Consensus        13 l~~lL~~~~s--~d~~~r~~AE~~L~~---~~~----~~~~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~   82 (191)
                      |..+.++...  |++.+|-.|...|.+   |.+    ...--.|++++.+..+ +++..+|+.|-..|-+.+.-|+..+.
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~  253 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME  253 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555543  588999999988874   222    1223556666666543 45788999999999999999987776


Q ss_pred             hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---------C-CCC-c-----------hHHHHHHHHhhcCCc
Q psy9906          83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD---------L-KSW-P-----------ELLPTLNDMLDSQDY  140 (191)
Q Consensus        83 ~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---------~-~~W-p-----------ell~~L~~~l~~~~~  140 (191)
                      +...+.+-.--+.++.+.+..|.-+..+.++.|+..|.         + ..= |           +++|.|++.+..+++
T Consensus       254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde  333 (859)
T KOG1241|consen  254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE  333 (859)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence            66666666667777888999999999999999987651         1 112 3           899999999987532


Q ss_pred             -------cc----------------cchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhchhhc
Q psy9906         141 -------NV----------------CELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLL  187 (191)
Q Consensus       141 -------~~----------------~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~~~~  187 (191)
                             +.                .+..-.+++++++.+.++||..|++|++|||+|.+|+++--|+-+
T Consensus       334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i  403 (859)
T KOG1241|consen  334 DDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI  403 (859)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence                   21                244446678888899999999999999999999999998777643

>KOG2021|consensus

Probab=98.85  E-value=1.3e-07  Score=85.61  Aligned_cols=145  Identities=14%  Similarity=0.191  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906          11 IQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus        11 ~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      +.+-|++.+...|  |...|+||-+++++++..|+.+..+..++.. .+.++.+|..+...|-..++..++..+..+.+.
T Consensus         3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~-~ts~d~vkf~clqtL~e~vrekyne~nl~elql   81 (980)
T KOG2021|consen    3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLIN-ETSNDLVKFYCLQTLIELVREKYNEANLNELQL   81 (980)
T ss_pred             hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence            3455666666666  9999999999999999999999999999975 447889999999999999998888899999999


Q ss_pred             HHHHHHHhhC-----CC----CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCc-cccchhhhHHHHHhhh
Q psy9906          89 IKQECLSAIG-----DP----SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDY-NVCELLPVLLPILKET  156 (191)
Q Consensus        89 ik~~ll~~l~-----~~----~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~-~~~~~~l~~L~~l~e~  156 (191)
                      ||..+..-++     ..    ++.++++++++++.+.-.+||..||+++..+...++.+.. ...+--+++|-.+.++
T Consensus        82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE  159 (980)
T KOG2021|consen   82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE  159 (980)
T ss_pred             HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence            9998877543     23    7899999999999999999999999999999999886532 2245555666444443

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=98.69  E-value=5.9e-08  Score=71.89  Aligned_cols=58  Identities=29%  Similarity=0.500  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906         101 SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH  159 (191)
Q Consensus       101 ~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~  159 (191)
                      ++.|+++++.+++.|+.+|||+.||++++.+++.+++ ++...+.++.+|..+.|++.+
T Consensus         1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~   58 (148)
T PF08389_consen    1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD   58 (148)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999987 578889999999999998865

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.51  E-value=3e-06  Score=75.14  Aligned_cols=172  Identities=15%  Similarity=0.173  Sum_probs=123.9

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHH-hh---c---CCChHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCC
Q psy9906          13 ILQLLKESQS--PDNLIQRAVQHKLEQ-LN---T---HPDFNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFP   82 (191)
Q Consensus        13 l~~lL~~~~s--~d~~~r~~AE~~L~~-~~---~---~~~~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~   82 (191)
                      +..+..+.++  |+..+|-.|-..|.. +.   .   ..+-..|++++.+..+ +.+..+.+.|-..|-+.+.-++..+.
T Consensus       178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~  257 (858)
T COG5215         178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ  257 (858)
T ss_pred             HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555554  477889888887765 11   1   2344667777766544 44667878787888888888888777


Q ss_pred             hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-----CCCC---------------chHHHHHHHHhhcCC---
Q psy9906          83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-----LKSW---------------PELLPTLNDMLDSQD---  139 (191)
Q Consensus        83 ~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-----~~~W---------------pell~~L~~~l~~~~---  139 (191)
                      +-.-+.+-......+.+++..|..+..+.++.|+..+-     ...-               .|++|.|+.++..++   
T Consensus       258 ~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~  337 (858)
T COG5215         258 SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY  337 (858)
T ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc
Confidence            66666777777778889999999999999999988761     1122               368999999998753   


Q ss_pred             ----ccccchhhh----------------HHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhch
Q psy9906         140 ----YNVCELLPV----------------LLPILKETLFHHDWEIKESGILALGAIAEVNKSIGL  184 (191)
Q Consensus       140 ----~~~~~~~l~----------------~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~  184 (191)
                          ++.--++..                ++.++++.+.+++|..|++|++|||+|.+|+...-|
T Consensus       338 ~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~l  402 (858)
T COG5215         338 YGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCL  402 (858)
T ss_pred             cccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence                222223333                455666678889999999999999999999976544

>KOG2022|consensus

Probab=98.41  E-value=1.1e-05  Score=74.41  Aligned_cols=147  Identities=14%  Similarity=0.186  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH
Q psy9906           9 GLIQILQLLKESQSP-DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE   87 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~   87 (191)
                      ...++.++++.+.++ +.+....+++.|++++..|..+.+-.++++  ......+|.++|+.|--.|..+|..+++++..
T Consensus         5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ--~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~   82 (982)
T KOG2022|consen    5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQ--PDKSSEVQYFGALTLHDKINTRWEECPANEAV   82 (982)
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcC--CCchhHHHHHhHHHHHHHHHhhhccCChhHHH
Confidence            578899999999988 788888899999999998888888888886  23455679999999999999999999999999


Q ss_pred             HHHHHHHHhhC--C-CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC-c-----cccchhhhHHHHHhhhc
Q psy9906          88 FIKQECLSAIG--D-PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD-Y-----NVCELLPVLLPILKETL  157 (191)
Q Consensus        88 ~ik~~ll~~l~--~-~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~-~-----~~~~~~l~~L~~l~e~l  157 (191)
                      .+|..++..+.  + .++.|-++++..++..+-+.-|+.||+-+.+++..++.+. +     -.++..+.+|+++-+.+
T Consensus        83 qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~  161 (982)
T KOG2022|consen   83 QLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF  161 (982)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence            99999999775  2 4677778888888888888889999999999999888652 2     12455555555554443

>KOG1410|consensus

Probab=98.14  E-value=0.00012  Score=66.33  Aligned_cols=144  Identities=15%  Similarity=0.201  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      ++.++.=|..  +.|+..|.+||..|.++...|++..-+..++.  .+..+--.++|+..|-+.+..+ ..++-+.|-.|
T Consensus         7 Le~lCk~LY~--s~D~~~R~~AE~~L~e~s~speclskCqlll~--~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldi   81 (1082)
T KOG1410|consen    7 LESLCKDLYE--STDPTARHRAEKALAELSESPECLSKCQLLLE--RGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDI   81 (1082)
T ss_pred             HHHHHHHHHh--cCCHHHHHHHHHHHHHHccCHHHHHHHHHHHH--cCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHH
Confidence            3444444444  45789999999999999999999999888886  3445567788888888888766 37999999999


Q ss_pred             HHHHHHhhCC-C---CHHHHHHHHHHHHHHHhhCCCC------CCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcC
Q psy9906          90 KQECLSAIGD-P---SPLIRATVGILITTIASKGDLK------SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLF  158 (191)
Q Consensus        90 k~~ll~~l~~-~---~~~ir~~~~~~i~~Ia~~e~~~------~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~  158 (191)
                      |+.+++-+.+ .   .+.+-..+.+.++.|.+.+|-+      ...|.+..+...++.++.+++-.+..+|..+.+++-
T Consensus        82 r~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN  160 (1082)
T KOG1410|consen   82 RNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMN  160 (1082)
T ss_pred             HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Confidence            9999999987 2   4678888999999999999642      245788889999998888899999999988887653

>PRK09687 putative lyase; Provisional

Probab=98.03  E-value=0.00025  Score=58.72  Aligned_cols=150  Identities=15%  Similarity=0.086  Sum_probs=91.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHH
Q psy9906          15 QLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECL   94 (191)
Q Consensus        15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll   94 (191)
                      +++...-++|..+|..|-..|..+.. +.....+..++   ++.++.+|..|+-.|-..-..      .......=..|.
T Consensus        27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll---~~~d~~vR~~A~~aLg~lg~~------~~~~~~a~~~L~   96 (280)
T PRK09687         27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELC---SSKNPIERDIGADILSQLGMA------KRCQDNVFNILN   96 (280)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHH---hCCCHHHHHHHHHHHHhcCCC------ccchHHHHHHHH
Confidence            44444467888999999999987765 66666666665   356788999988777653210      000111222333


Q ss_pred             Hh-hCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh---------hhcCCCcHHH
Q psy9906          95 SA-IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK---------ETLFHHDWEI  164 (191)
Q Consensus        95 ~~-l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~---------e~l~~~~~~~  164 (191)
                      .. +.++++.||..++.+++.+...+ +...|.+++.+...+.++++..+..+...|..+.         +-+.+.++.+
T Consensus        97 ~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~V  175 (280)
T PRK09687         97 NLALEDKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDV  175 (280)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHH
Confidence            33 34567777777777777764433 2223566666666666666666666666654433         2345566777


Q ss_pred             HHHHHHHHHHH
Q psy9906         165 KESGILALGAI  175 (191)
Q Consensus       165 r~~~i~~~~ai  175 (191)
                      |..|+.++|.+
T Consensus       176 R~~A~~aLg~~  186 (280)
T PRK09687        176 RNWAAFALNSN  186 (280)
T ss_pred             HHHHHHHHhcC
Confidence            77777777766

>KOG2081|consensus

Probab=97.94  E-value=9.3e-05  Score=65.46  Aligned_cols=127  Identities=17%  Similarity=0.243  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhC---CCCHHHH
Q psy9906          29 RAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIG---DPSPLIR  105 (191)
Q Consensus        29 ~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~---~~~~~ir  105 (191)
                      ..|-..|.+|++.++.|..+-.++.  ...+...-.+|+..+|++|+..+..+++.+-...|+.++..+.   +.++.++
T Consensus         2 ~~A~~~L~~FQ~S~~aW~i~~eiL~--~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~   79 (559)
T KOG2081|consen    2 EKANNWLGNFQKSNDAWQICEEILS--QKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR   79 (559)
T ss_pred             chHhHHHHHhCCChHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence            3578899999998899999999986  3468889999999999999999999999888999997777654   3445999


Q ss_pred             HHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCC
Q psy9906         106 ATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHH  160 (191)
Q Consensus       106 ~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~  160 (191)
                      .+++-+|+.+|-+-+  .|.+-++++++...+..+. .-+.+.+|+.+-|+..+.
T Consensus        80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~  131 (559)
T KOG2081|consen   80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDI  131 (559)
T ss_pred             HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcch
Confidence            999999999998885  7888788888777765544 567777888888876554

>PRK09687 putative lyase; Provisional

Probab=97.67  E-value=0.0016  Score=53.92  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=94.4

Q ss_pred             hcCCCHHHHHHHHHHHHHhhcC----CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh--hhcCCChhHHHHHHHHH
Q psy9906          20 SQSPDNLIQRAVQHKLEQLNTH----PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA--RFYEFPPGVSEFIKQEC   93 (191)
Q Consensus        20 ~~s~d~~~r~~AE~~L~~~~~~----~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~--~W~~i~~~~k~~ik~~l   93 (191)
                      ..++|+.+|..|-..|-++...    +.....|..++.  .+.+..||..|+-.|-+.=..  .|.       ....+.+
T Consensus        63 l~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~-------~~a~~~l  133 (280)
T PRK09687         63 CSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYS-------PKIVEQS  133 (280)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccc-------hHHHHHH
Confidence            3577999999999999998762    235666666653  456788998888877654211  121       1233345


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHH-----------hhhcCCCcH
Q psy9906          94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPIL-----------KETLFHHDW  162 (191)
Q Consensus        94 l~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l-----------~e~l~~~~~  162 (191)
                      ...+.++++.||..++.+++.+.       =++.++.|..++.++++..+..+...|..+           ..-+.+.++
T Consensus       134 ~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~  206 (280)
T PRK09687        134 QITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNE  206 (280)
T ss_pred             HHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCh
Confidence            56666777788877777775442       156778888888777777777777777543           234556778


Q ss_pred             HHHHHHHHHHHHH
Q psy9906         163 EIKESGILALGAI  175 (191)
Q Consensus       163 ~~r~~~i~~~~ai  175 (191)
                      .+|..|+.++|.+
T Consensus       207 ~VR~~A~~aLg~~  219 (280)
T PRK09687        207 EIRIEAIIGLALR  219 (280)
T ss_pred             HHHHHHHHHHHcc
Confidence            8888888777754

>KOG2023|consensus

Probab=97.52  E-value=0.0043  Score=56.46  Aligned_cols=164  Identities=26%  Similarity=0.329  Sum_probs=106.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhc-CCCh-----HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906          17 LKESQSPDNLIQRAVQHKLEQLNT-HPDF-----NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK   90 (191)
Q Consensus        17 L~~~~s~d~~~r~~AE~~L~~~~~-~~~~-----~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik   90 (191)
                      |+=.-+|.+..|..|-.-++++-- +++.     -.+|-.++.-.+..++.||..-+.-|--.+.-+-+++-+.-. .|-
T Consensus       180 l~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~Iv  258 (885)
T KOG2023|consen  180 LQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIV  258 (885)
T ss_pred             HHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHH
Confidence            333345688999999999888653 2221     222323332224568889987776666666666666555443 445


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-----CCchHHHHHHHHhhcC-----------C---------------
Q psy9906          91 QECLSAIGDPSPLIRATVGILITTIASKGDLK-----SWPELLPTLNDMLDSQ-----------D---------------  139 (191)
Q Consensus        91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-----~Wpell~~L~~~l~~~-----------~---------------  139 (191)
                      +.+++...+.+..|.--+|+.+-.+|..--+.     .-+.++|.|++-+.=+           +               
T Consensus       259 eyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRf  338 (885)
T KOG2023|consen  259 EYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRF  338 (885)
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchh
Confidence            57777777777778888888888888665221     1355666665433210           0               


Q ss_pred             ------------------------------cccc----------------chhhhHHHHHhhhcCCCcHHHHHHHHHHHH
Q psy9906         140 ------------------------------YNVC----------------ELLPVLLPILKETLFHHDWEIKESGILALG  173 (191)
Q Consensus       140 ------------------------------~~~~----------------~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~  173 (191)
                                                    ++.+                +..-.+++++++.+++.+|.+|+++|.|+|
T Consensus       339 hksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlG  418 (885)
T KOG2023|consen  339 HKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALG  418 (885)
T ss_pred             hhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHH
Confidence                                          1111                223334588888999999999999999999


Q ss_pred             HHhhhhhh
Q psy9906         174 AIAEVNKS  181 (191)
Q Consensus       174 ai~~~~~~  181 (191)
                      ||+||.-+
T Consensus       419 AIAEGcM~  426 (885)
T KOG2023|consen  419 AIAEGCMQ  426 (885)
T ss_pred             HHHHHHhh
Confidence            99999754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.45  E-value=0.0054  Score=58.58  Aligned_cols=149  Identities=17%  Similarity=0.159  Sum_probs=85.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh---------hhhcCCChhH
Q psy9906          15 QLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR---------ARFYEFPPGV   85 (191)
Q Consensus        15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~---------~~W~~i~~~~   85 (191)
                      .++...-++|+.+|+.|-+.|..+.. ++....|...+.   +.+..||..|+-.|.....         .....-++..
T Consensus       625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~V  700 (897)
T PRK13800        625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVV  700 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHH
Confidence            34444458999999999999998875 777788887773   5688899998877765532         0111111222


Q ss_pred             HHHHH-----------HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906          86 SEFIK-----------QECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK  154 (191)
Q Consensus        86 k~~ik-----------~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~  154 (191)
                      |..+-           ..++..|.++++.+|..+...+..+.      ..    +.|...+.++++..+..+...|..+.
T Consensus       701 R~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~------~~----~~l~~~l~D~~~~VR~~aa~aL~~~~  770 (897)
T PRK13800        701 RAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVD------DV----ESVAGAATDENREVRIAVAKGLATLG  770 (897)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhccc------Cc----HHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            22111           12233445556666665555555431      11    22344555555555555555543332


Q ss_pred             -----------hhcCCCcHHHHHHHHHHHHHHhh
Q psy9906         155 -----------ETLFHHDWEIKESGILALGAIAE  177 (191)
Q Consensus       155 -----------e~l~~~~~~~r~~~i~~~~ai~~  177 (191)
                                 .-+.+.++.+|.+++.++|.+-.
T Consensus       771 ~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~  804 (897)
T PRK13800        771 AGGAPAGDAVRALTGDPDPLVRAAALAALAELGC  804 (897)
T ss_pred             cccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence                       22345667777777777776643

>KOG1824|consensus

Probab=97.34  E-value=0.0046  Score=58.15  Aligned_cols=155  Identities=17%  Similarity=0.166  Sum_probs=109.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhCCCChhHHhHHH-HHHHHhhhhhhcCCC--hhHHHHH
Q psy9906          15 QLLKESQSPDNLIQRAVQHKLEQLNT--HPDFNNYLIFVLTKLTSEDEPTRSLSG-LILKNNVRARFYEFP--PGVSEFI   89 (191)
Q Consensus        15 ~lL~~~~s~d~~~r~~AE~~L~~~~~--~~~~~~~L~~il~~~~~~~~~vRq~A~-i~LKn~i~~~W~~i~--~~~k~~i   89 (191)
                      -++++..||..+++++|-..|-.+..  -|.|.+++++...     .++-||.=. .-||-.|.  |..++  -+.-+.|
T Consensus       861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~-----sqpk~QyLLLhSlkevi~--~~svd~~~~~v~~I  933 (1233)
T KOG1824|consen  861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIE-----SQPKRQYLLLHSLKEVIV--SASVDGLKPYVEKI  933 (1233)
T ss_pred             HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHh-----cchHhHHHHHHHHHHHHH--HhccchhhhhHHHH
Confidence            45667788999999999999998875  3667777777664     334666554 46777776  54444  2222233


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh---------------
Q psy9906          90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK---------------  154 (191)
Q Consensus        90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~---------------  154 (191)
                      =.-+.+-........|+.+++|++.++-.|+    ..|+|.|-..+.+++++++-.+..+.+|.-               
T Consensus       934 W~lL~k~cE~~eegtR~vvAECLGkL~l~ep----esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~i 1009 (1233)
T KOG1824|consen  934 WALLFKHCECAEEGTRNVVAECLGKLVLIEP----ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQI 1009 (1233)
T ss_pred             HHHHHHhcccchhhhHHHHHHHhhhHHhCCh----HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHH
Confidence            3344444444567779999999999999983    359999999999998877766666543321               


Q ss_pred             -h---hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         155 -E---TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       155 -e---~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                       +   -+.++|.++|..|+.++-+.+.+..
T Consensus      1010 g~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1010 GDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence             1   2457899999999998888766543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.32  E-value=0.017  Score=55.16  Aligned_cols=147  Identities=18%  Similarity=0.102  Sum_probs=81.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhh-------hhhhcCCChhHHHHH----
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNV-------RARFYEFPPGVSEFI----   89 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i-------~~~W~~i~~~~k~~i----   89 (191)
                      -++|..+|..|=..|.++.........|...+.   +.++.+|..|.-.|...-       ...-..-++..|...    
T Consensus       662 ~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL  738 (897)
T PRK13800        662 GDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRAL  738 (897)
T ss_pred             cCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence            456788888888888777442223345555553   356678887776665321       000011111111100    


Q ss_pred             -----HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh----------
Q psy9906          90 -----KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK----------  154 (191)
Q Consensus        90 -----k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~----------  154 (191)
                           -..|+.++.++++.||..++..+..+...+     +.-++.|..+++++++..+..++..|..+.          
T Consensus       739 ~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-----~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~  813 (897)
T PRK13800        739 VSVDDVESVAGAATDENREVRIAVAKGLATLGAGG-----APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAAT  813 (897)
T ss_pred             hcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc-----chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Confidence                 023444556677888888888877775432     223556666666666666666666653322          


Q ss_pred             hhcCCCcHHHHHHHHHHHHHH
Q psy9906         155 ETLFHHDWEIKESGILALGAI  175 (191)
Q Consensus       155 e~l~~~~~~~r~~~i~~~~ai  175 (191)
                      +.+.+++|.+|.+|+.++|.+
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l  834 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGA  834 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhc
Confidence            234556677777776666654

>KOG2171|consensus

Probab=97.23  E-value=0.025  Score=54.15  Aligned_cols=120  Identities=19%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHhhc--CCChHHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906          15 QLLKESQS-PDNLIQRAVQHKLEQLNT--HPDFNNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK   90 (191)
Q Consensus        15 ~lL~~~~s-~d~~~r~~AE~~L~~~~~--~~~~~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik   90 (191)
                      ++|..+++ +...+|+.--...-++.+  -|+-|+-|+..+. ..++.+++.|..|..+|.......=....+- -..++
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH-LDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-HHHHH
Confidence            34444443 455677665555555543  2444555544443 3457788999999999977665332222211 13566


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHhhCC--CCCCc---hHHHHHHHHh
Q psy9906          91 QECLSAIGDPSPLIRATVGILITTIASKGD--LKSWP---ELLPTLNDML  135 (191)
Q Consensus        91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~--~~~Wp---ell~~L~~~l  135 (191)
                      .-+.++|.+++..||.....+++.++..-.  ...|+   +++|.+++.+
T Consensus       162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl  211 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVL  211 (1075)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHh
Confidence            677778888666688888888888877653  33343   4566555444

>PTZ00429 beta-adaptin; Provisional

Probab=96.91  E-value=0.051  Score=50.94  Aligned_cols=134  Identities=16%  Similarity=0.173  Sum_probs=91.8

Q ss_pred             cCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc--------------------
Q psy9906          21 QSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY--------------------   79 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~--------------------   79 (191)
                      .++|...|+.|-..+-.+.. --+....+.+++...++.+..+|.+.-+++.++.+.+=.                    
T Consensus        42 ~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~I  121 (746)
T PTZ00429         42 NGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVV  121 (746)
T ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHH
Confidence            45577777777777665543 234455555555444566888888888888877652110                    


Q ss_pred             ---------C-CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHhhcCCccccchhh
Q psy9906          80 ---------E-FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP--ELLPTLNDMLDSQDYNVCELLP  147 (191)
Q Consensus        80 ---------~-i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp--ell~~L~~~l~~~~~~~~~~~l  147 (191)
                               . -.++.-+.+-..+.+++.+.++.||+.++.|+.++.+.++. .-+  ++++.|.+++.++|+..+..|+
T Consensus       122 RaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~L~~LL~D~dp~Vv~nAl  200 (746)
T PTZ00429        122 RALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKDLVELLNDNNPVVASNAA  200 (746)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-cccccchHHHHHHHhcCCCccHHHHHH
Confidence                     0 13444555666667778889999999999999999988742 212  4667788888888888888888


Q ss_pred             hHHHHHhh
Q psy9906         148 VLLPILKE  155 (191)
Q Consensus       148 ~~L~~l~e  155 (191)
                      .+|..+++
T Consensus       201 ~aL~eI~~  208 (746)
T PTZ00429        201 AIVCEVND  208 (746)
T ss_pred             HHHHHHHH
Confidence            88877765

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.79  E-value=0.0024  Score=34.74  Aligned_cols=30  Identities=43%  Similarity=0.536  Sum_probs=24.8

Q ss_pred             HHHHHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         149 LLPILKETLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       149 ~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                      +++.+.+-+.+++|++|.+|+.++|.|++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            356777778889999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.70  E-value=0.032  Score=49.54  Aligned_cols=127  Identities=24%  Similarity=0.286  Sum_probs=82.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHh
Q psy9906          19 ESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSA   96 (191)
Q Consensus        19 ~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~   96 (191)
                      ...+.|...|+-+.-.+..+.. +|+.......-+. +..+.++.+|-+|.-.+=+..       +++.-+.+-..+.+.
T Consensus        50 l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~l  122 (526)
T PF01602_consen   50 LISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKL  122 (526)
T ss_dssp             TCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHH
Confidence            3335566666666666666554 2332222222221 123445556666555554432       466667777788888


Q ss_pred             hCCCCHHHHHHHHHHHHHHHhhCCCCCCch-HHHHHHHHhhcCCccccchhhhHHHHH
Q psy9906          97 IGDPSPLIRATVGILITTIASKGDLKSWPE-LLPTLNDMLDSQDYNVCELLPVLLPIL  153 (191)
Q Consensus        97 l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpe-ll~~L~~~l~~~~~~~~~~~l~~L~~l  153 (191)
                      +.++++.||++++.++..+.+.+ |+.-+. +++.+.+++.++|+..+.+|+.++..+
T Consensus       123 l~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  123 LSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             HHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            88888999999999999999886 444344 688888888888877777777777666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.53  E-value=0.011  Score=39.40  Aligned_cols=75  Identities=27%  Similarity=0.377  Sum_probs=56.7

Q ss_pred             HHHHhh-CCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCC-C
Q psy9906          92 ECLSAI-GDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFH-H  160 (191)
Q Consensus        92 ~ll~~l-~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~-~  160 (191)
                      .|++.| .++++.+|..++.+++.+.       =|+.++.|.++++++++..+..+...|..+.+         .+.+ .
T Consensus         3 ~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~   75 (88)
T PF13646_consen    3 ALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIKLLQDDD   75 (88)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-S
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCC
Confidence            577777 6789999998888888332       14899999999998898888888887755543         3444 3


Q ss_pred             cHHHHHHHHHHHH
Q psy9906         161 DWEIKESGILALG  173 (191)
Q Consensus       161 ~~~~r~~~i~~~~  173 (191)
                      ++.+|.+++.++|
T Consensus        76 ~~~vr~~a~~aL~   88 (88)
T PF13646_consen   76 DEVVREAAAEALG   88 (88)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhhcC
Confidence            5677999988876

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.47  E-value=0.048  Score=36.26  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=62.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ   91 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~   91 (191)
                      .|++.|.+  ++|+.+|..|-..|.++.. +.....|...+.   +.++.+|..|+..|.+.          .. .....
T Consensus         3 ~L~~~l~~--~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i----------~~-~~~~~   65 (88)
T PF13646_consen    3 ALLQLLQN--DPDPQVRAEAARALGELGD-PEAIPALIELLK---DEDPMVRRAAARALGRI----------GD-PEAIP   65 (88)
T ss_dssp             HHHHHHHT--SSSHHHHHHHHHHHHCCTH-HHHHHHHHHHHT---SSSHHHHHHHHHHHHCC----------HH-HHTHH
T ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHc---CCCHHHHHHHHHHHHHh----------CC-HHHHH
Confidence            34444433  8899999999999997765 678888888873   57889999999999865          11 23455


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHH
Q psy9906          92 ECLSAIGD-PSPLIRATVGILIT  113 (191)
Q Consensus        92 ~ll~~l~~-~~~~ir~~~~~~i~  113 (191)
                      .|.+.+.+ .+..+|..+..+++
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            77777776 56777888777664

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.30  E-value=0.16  Score=40.24  Aligned_cols=117  Identities=17%  Similarity=0.220  Sum_probs=72.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhh---cCCChh-HHH
Q psy9906          14 LQLLKESQSPDNLIQRAVQHKLEQLNTHPDF-NNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARF---YEFPPG-VSE   87 (191)
Q Consensus        14 ~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~-~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W---~~i~~~-~k~   87 (191)
                      -.+|..+.++...+|..|...|..+-..-++ ...+..++. ..++-++.+|..++.++...+...+   ..+... .-.
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~  176 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK  176 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence            3455666777888999999999998886552 333233332 2356688999999999999998766   223222 235


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh
Q psy9906          88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDML  135 (191)
Q Consensus        88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l  135 (191)
                      .+-..+..++.++++.+|..+-.++..+.++     ||+--..+++.+
T Consensus       177 ~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~-----~~~~a~~~~~~l  219 (228)
T PF12348_consen  177 QLVKALVKLLSDADPEVREAARECLWALYSH-----FPERAESILSML  219 (228)
T ss_dssp             HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH-----H-HHH-------
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----CCHhhccchhcc
Confidence            6777888899999999999999999999765     566555555444

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.10  E-value=0.17  Score=45.41  Aligned_cols=158  Identities=18%  Similarity=0.139  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHhhcC-------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHh
Q psy9906          24 DNLIQRAVQHKLEQLNTH-------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSA   96 (191)
Q Consensus        24 d~~~r~~AE~~L~~~~~~-------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~   96 (191)
                      +.+....+-..|..+-..       +++..+|..-+   ++.++.||.++.-.+++.+...=....--....+-..++.+
T Consensus        51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL---~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~  127 (503)
T PF10508_consen   51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGL---THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQC  127 (503)
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHH
Confidence            455555555566654431       33444444444   46788999999999998886431111101112345578888


Q ss_pred             hCCCCHHHHHHHHHHHHHHHhhCCCCC---CchHHHHHHHHhhcCCccccchhhh--------------------HHHHH
Q psy9906          97 IGDPSPLIRATVGILITTIASKGDLKS---WPELLPTLNDMLDSQDYNVCELLPV--------------------LLPIL  153 (191)
Q Consensus        97 l~~~~~~ir~~~~~~i~~Ia~~e~~~~---Wpell~~L~~~l~~~~~~~~~~~l~--------------------~L~~l  153 (191)
                      +.+++..+.+.++.++..++++...-+   =+++++.|.+++..++...+.-++.                    +++.+
T Consensus       128 L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~l  207 (503)
T PF10508_consen  128 LRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLL  207 (503)
T ss_pred             HcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHH
Confidence            899999999999999999998762211   1234788888887744333222222                    23333


Q ss_pred             hhhcCCCcHHHHHHHHHHHHHHhhhhhhhchhh
Q psy9906         154 KETLFHHDWEIKESGILALGAIAEVNKSIGLKL  186 (191)
Q Consensus       154 ~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~~~  186 (191)
                      .+.+.+.|..+|..++..++.+++  .+.|++.
T Consensus       208 l~eL~~dDiLvqlnalell~~La~--~~~g~~y  238 (503)
T PF10508_consen  208 LKELDSDDILVQLNALELLSELAE--TPHGLQY  238 (503)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHc--ChhHHHH
Confidence            445677889999999999999988  4444443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.08  E-value=0.016  Score=40.36  Aligned_cols=106  Identities=14%  Similarity=0.074  Sum_probs=68.7

Q ss_pred             CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9906          42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE----FIKQECLSAIGDPSPLIRATVGILITTIAS  117 (191)
Q Consensus        42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~----~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~  117 (191)
                      .|....+..++.   +.+..+|..|...|.+.....    ++..+.    .+-+.+++.|.++++.++.....++..++.
T Consensus         6 ~~~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           6 AGGLPALVSLLS---SSDENVQREAAWALSNLSAGN----NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA   78 (120)
T ss_pred             cCChHHHHHHHH---cCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence            467778888875   235789999999998877542    122222    233456666777899999999999999987


Q ss_pred             hCCCC---CC-chHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906         118 KGDLK---SW-PELLPTLNDMLDSQDYNVCELLPVLLPILK  154 (191)
Q Consensus       118 ~e~~~---~W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~  154 (191)
                      ..++.   -+ .++++.+.+.+...+...++.++.+|.-++
T Consensus        79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            66321   12 235666666666555555555555554443

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=95.81  E-value=0.81  Score=43.10  Aligned_cols=163  Identities=13%  Similarity=0.209  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      ..+-.+...+.+||+-+|--|=..|-.+.. |+...++..-+.. .++.++-||..|++.+-+.....-..+.   ...+
T Consensus       105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~---~~~~  180 (746)
T PTZ00429        105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY---QQDF  180 (746)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc---ccch
Confidence            444555556677788888888777776655 6666655444322 2455778888888887776553322111   1224


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc---hHHHHHH---------------HHhhcCCccccchhhhHHH
Q psy9906          90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP---ELLPTLN---------------DMLDSQDYNVCELLPVLLP  151 (191)
Q Consensus        90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp---ell~~L~---------------~~l~~~~~~~~~~~l~~L~  151 (191)
                      .+.|.+.|.++++.+...+..++..|...+ |+.|.   ..+..++               +++....+....-+..++.
T Consensus       181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~-~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~  259 (746)
T PTZ00429        181 KKDLVELLNDNNPVVASNAAAIVCEVNDYG-SEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLT  259 (746)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHhC-chhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            455666778888888877777777776544 22231   1122222               2222222222233455666


Q ss_pred             HHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         152 ILKETLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       152 ~l~e~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                      .+...+.+.+-.+-.+|++++..+...
T Consensus       260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        260 RVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            666677778888888888887777654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.65  E-value=0.28  Score=43.53  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      ..++.+++.... +|...++.+=..|-.+... .+....+..++....+.+...|.++-+++.......     ++.--.
T Consensus         6 ~~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-----~~~~~l   79 (526)
T PF01602_consen    6 SQELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED-----PELLIL   79 (526)
T ss_dssp             HHHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-----HHHHHH
T ss_pred             HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-----hhHHHH
Confidence            456777777665 6777888888877766542 233333444443335678889999988887765533     444556


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-------------
Q psy9906          89 IKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE-------------  155 (191)
Q Consensus        89 ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-------------  155 (191)
                      +-+.+.+-|.++++.+|..+-.+++.|..   ++-.|.+++.+.+++.++++..+..|..++..+.+             
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~  156 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPK  156 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            66777788889999999777777777773   44568899999999999988777777666633332             


Q ss_pred             ---hcCCCcHHHHHHHHHHHHHH
Q psy9906         156 ---TLFHHDWEIKESGILALGAI  175 (191)
Q Consensus       156 ---~l~~~~~~~r~~~i~~~~ai  175 (191)
                         -+.+.++.++.+|+.++..|
T Consensus       157 l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  157 LKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             HHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             HhhhccCCcchhHHHHHHHHHHH
Confidence               23446788999998888888

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0166|consensus

Probab=95.64  E-value=0.16  Score=45.39  Aligned_cols=161  Identities=16%  Similarity=0.201  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE   80 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~   80 (191)
                      ..++++|...  -++..+-+|-=.|.++..          ..|....+..++.   +.+..+|-.|.--|-|.....   
T Consensus       112 ~~lV~~l~~~--~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~---s~~~~v~eQavWALgNIagds---  183 (514)
T KOG0166|consen  112 PRLVEFLSRD--DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS---SPSADVREQAVWALGNIAGDS---  183 (514)
T ss_pred             HHHHHHHccC--CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc---CCcHHHHHHHHHHHhccccCC---
Confidence            3444444422  224556666666665542          2355566666653   456677877777777766532   


Q ss_pred             CChhHHHHHHH-----HHHHhhCCCCH-HHHHHHHHHHHHHHhhC-CCCCC---chHHHHHHHHhhcCCccccchhhhHH
Q psy9906          81 FPPGVSEFIKQ-----ECLSAIGDPSP-LIRATVGILITTIASKG-DLKSW---PELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus        81 i~~~~k~~ik~-----~ll~~l~~~~~-~ir~~~~~~i~~Ia~~e-~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                        +..|.++.+     .|+..+..+.+ .+.+.+..+++.+++.- ++-.|   ..++|.|..++.+.|++...-+.-.+
T Consensus       184 --~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl  261 (514)
T KOG0166|consen  184 --PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWAL  261 (514)
T ss_pred             --hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence              555555544     34444444444 67788999999999997 55455   46899999999999988877777778


Q ss_pred             HHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906         151 PILKE--------------------TLFHHDWEIKESGILALGAIAEVNKS  181 (191)
Q Consensus       151 ~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~~~~  181 (191)
                      +|+.+                    -+.+++..++..|++++|.|+.|.+.
T Consensus       262 syLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~  312 (514)
T KOG0166|consen  262 SYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE  312 (514)
T ss_pred             HHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence            88875                    13445677888999999999988764

>KOG2956|consensus

Probab=95.37  E-value=1.5  Score=38.78  Aligned_cols=170  Identities=19%  Similarity=0.219  Sum_probs=101.9

Q ss_pred             CCCChHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCC-------hHHHHHHHHhhh-CCCChhHHhHHHHHHHH
Q psy9906           3 WQPQEEG-LIQILQLLKESQSP-DNLIQRAVQHKLEQLNTHPD-------FNNYLIFVLTKL-TSEDEPTRSLSGLILKN   72 (191)
Q Consensus         3 ~~p~~~~-~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~~~~-------~~~~L~~il~~~-~~~~~~vRq~A~i~LKn   72 (191)
                      |+|+.-+ ...+.+.|.++-+. ..+.|+.|-.+|..+....+       |...|..++... .+.+..+|.+|.=.|+.
T Consensus       277 ~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~  356 (516)
T KOG2956|consen  277 LTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLRE  356 (516)
T ss_pred             CCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence            5555443 34456666666554 56788889888887665331       444444444332 34678899999999999


Q ss_pred             hhhhhhcCCChhHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHH
Q psy9906          73 NVRARFYEFPPGVSEFIKQECLSAIGDPS-PLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLP  151 (191)
Q Consensus        73 ~i~~~W~~i~~~~k~~ik~~ll~~l~~~~-~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~  151 (191)
                      ..+..=..+-+..-..| ..+|++=.+++ ..+|.+.-.|...++.+++...=..+-|    ++...|+...-.++..+.
T Consensus       357 ml~~Q~~~l~DstE~ai-~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~----~Ilt~D~~~~~~~iKm~T  431 (516)
T KOG2956|consen  357 MLTNQPARLFDSTEIAI-CKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISP----LILTADEPRAVAVIKMLT  431 (516)
T ss_pred             HHHhchHhhhchHHHHH-HHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhh----HHhcCcchHHHHHHHHHH
Confidence            99876554434443344 46777767654 5555555666777788875444333333    333334333333343444


Q ss_pred             HHhh--------------------hcCCCcHHHHHHHHHHHHHHhh
Q psy9906         152 ILKE--------------------TLFHHDWEIKESGILALGAIAE  177 (191)
Q Consensus       152 ~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~  177 (191)
                      .+++                    .+-+.+=.+|.++|.++-||+.
T Consensus       432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            4443                    2334567899999988877653

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.24  E-value=1  Score=34.55  Aligned_cols=130  Identities=18%  Similarity=0.172  Sum_probs=85.8

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCh-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCC
Q psy9906          24 DNLIQRAVQHKLEQLNT-HPDF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS  101 (191)
Q Consensus        24 d~~~r~~AE~~L~~~~~-~~~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~  101 (191)
                      |+.+|..+--.+-.+.. .|+. -.++-.+.....+.++.||..|.+.|.+.+...+...    |..+=..++.++.+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l~D~~   76 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLLVDEN   76 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHHcCCC
Confidence            46778888888877664 4553 2333333333456789999999999999998765433    2334346667788999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC------ccccchhhhHHHHHhhhc
Q psy9906         102 PLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD------YNVCELLPVLLPILKETL  157 (191)
Q Consensus       102 ~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~------~~~~~~~l~~L~~l~e~l  157 (191)
                      +.||..+..++..+.....|+.-...++.++..+.+..      ....+--..++.++-+.+
T Consensus        77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i  138 (178)
T PF12717_consen   77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI  138 (178)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence            99999999999999999655555566666666555432      122333344555555544

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=95.23  E-value=0.53  Score=42.24  Aligned_cols=137  Identities=21%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906          15 QLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG   84 (191)
Q Consensus        15 ~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~   84 (191)
                      -+..+..+|++.+|.-|=.++.....          .++....++..+   .+.+..+...|+-.|++..+.. ..+..=
T Consensus        81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L---~~~d~~Va~~A~~~L~~l~~~~-~~~~~l  156 (503)
T PF10508_consen   81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL---RDPDLSVAKAAIKALKKLASHP-EGLEQL  156 (503)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH---cCCcHHHHHHHHHHHHHHhCCc-hhHHHH
Confidence            34455667899999998887776533          234455555555   4578899999999999988742 111000


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---CCCC-chHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD---LKSW-PELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---~~~W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      ....+...|...+..++..+|-.+.++++.|++...   ...+ .++++.++..+.+.|.-.+..++.+|..+.+
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            001115556666667788889889999999998862   2222 2599999999998776666777777766655

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.18  E-value=0.63  Score=43.63  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchH--HHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPEL--LPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpel--l~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      .+=..+.+++.++++.||+.++.||..+.+.+ ++-.+++  ...+..++.++|+..+..|+..|..++++
T Consensus       127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            33445556677789999999999999999998 3444544  44455666788999999999999888876

>KOG1242|consensus

Probab=94.85  E-value=1.2  Score=40.42  Aligned_cols=129  Identities=16%  Similarity=0.102  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CCh--HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDF--NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS   86 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~--~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k   86 (191)
                      +.-+..+|.+..+.++.+|..|....+..... +.+  -..|...+.......=+.++.+.-+|.......-..++.-..
T Consensus       215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp  294 (569)
T KOG1242|consen  215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP  294 (569)
T ss_pred             HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh
Confidence            55677788888888999999999888876652 222  122222221111112245555555665444433222333333


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC
Q psy9906          87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD  139 (191)
Q Consensus        87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~  139 (191)
                      +.|+ .+.+.|-++.+.+|++...++..+........=.-++|.|++.+++++
T Consensus       295 ~iiP-~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~  346 (569)
T KOG1242|consen  295 DLIP-VLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS  346 (569)
T ss_pred             HhhH-HHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence            3333 566667778888888888888888877644444457777777777664

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.57  E-value=0.17  Score=35.25  Aligned_cols=69  Identities=19%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC---CCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906          86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL---KSWPELLPTLNDMLDSQDYNVCELLPVLLPILK  154 (191)
Q Consensus        86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~---~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~  154 (191)
                      .+.|=..++.++.+++.+||-.+++++..|++.-..   ...+++++.|...+.++|++.+.++-.+-+.++
T Consensus        25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            345555788889999999999999999999887633   245778888888888888877666644445544

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.46  E-value=1  Score=30.91  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=60.9

Q ss_pred             CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCch-HHHHHHHH
Q psy9906          56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPE-LLPTLNDM  134 (191)
Q Consensus        56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpe-ll~~L~~~  134 (191)
                      .+..+++|--|...|++.|.++=  .+......|-.-++..|.++++.|--.+..+++.++...     |+ .++.|++.
T Consensus        13 ~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-----p~~vl~~L~~~   85 (92)
T PF10363_consen   13 NDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-----PDEVLPILLDE   85 (92)
T ss_pred             cCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-----hHHHHHHHHHH
Confidence            45677899999999999999764  455666677778888899999999999999999999776     44 77777766


Q ss_pred             hhcC
Q psy9906         135 LDSQ  138 (191)
Q Consensus       135 l~~~  138 (191)
                      -.+.
T Consensus        86 y~~~   89 (92)
T PF10363_consen   86 YADP   89 (92)
T ss_pred             HhCc
Confidence            5543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.20  E-value=0.65  Score=35.63  Aligned_cols=91  Identities=14%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             hhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC
Q psy9906          60 EPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD  139 (191)
Q Consensus        60 ~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~  139 (191)
                      +.+|.-+.+.+--...++ .    ..-+..-..+...|.++++.||..+..+++.+...|+-.-.+.++..+...+.++|
T Consensus         2 ~~vR~n~i~~l~DL~~r~-~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~   76 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRY-P----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN   76 (178)
T ss_pred             HHHHHHHHHHHHHHHHhC-c----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence            456666666665544443 2    22223344778889999999999999999999999976666778799999998888


Q ss_pred             ccccchhhhHHHHHhh
Q psy9906         140 YNVCELLPVLLPILKE  155 (191)
Q Consensus       140 ~~~~~~~l~~L~~l~e  155 (191)
                      +..+..|-.+|..+-.
T Consensus        77 ~~Ir~~A~~~~~e~~~   92 (178)
T PF12717_consen   77 PEIRSLARSFFSELLK   92 (178)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888744443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=94.06  E-value=0.35  Score=38.20  Aligned_cols=125  Identities=19%  Similarity=0.172  Sum_probs=59.2

Q ss_pred             CCCChhHHhHHHHHHHHhhhhh-hcCCChhHHHHHH---HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC---CCchHH
Q psy9906          56 TSEDEPTRSLSGLILKNNVRAR-FYEFPPGVSEFIK---QECLSAIGDPSPLIRATVGILITTIASKGDLK---SWPELL  128 (191)
Q Consensus        56 ~~~~~~vRq~A~i~LKn~i~~~-W~~i~~~~k~~ik---~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~---~Wpell  128 (191)
                      ++.+=..|.-|...|++.+..+ =....+..-..+|   ..+...+.+....+...++.++..++......   .-+.++
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            3445566777777777777655 1112344444555   34444444445556666677777777665221   123466


Q ss_pred             HHHHHHhhcCCccccchhhhHHHHHhh---------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         129 PTLNDMLDSQDYNVCELLPVLLPILKE---------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       129 ~~L~~~l~~~~~~~~~~~l~~L~~l~e---------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      |.|+..+.+++...++.+..+|..+++               ...+-++.+|..++..+..+++...
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            666666666554444555555444433               2233456677766666666554443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>TIGR02270 conserved hypothetical protein

Probab=93.84  E-value=1.2  Score=39.03  Aligned_cols=107  Identities=18%  Similarity=0.085  Sum_probs=61.7

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCC
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDP  100 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~  100 (191)
                      .+++.++|..+-..|..++. ++....|...+.   +.++.+|-.+.-.+.+.   .     .+    --..++..|.++
T Consensus        96 ~d~~~~vr~aaa~ALg~i~~-~~a~~~L~~~L~---~~~p~vR~aal~al~~r---~-----~~----~~~~L~~~L~d~  159 (410)
T TIGR02270        96 QAGPEGLCAGIQAALGWLGG-RQAEPWLEPLLA---ASEPPGRAIGLAALGAH---R-----HD----PGPALEAALTHE  159 (410)
T ss_pred             cCCCHHHHHHHHHHHhcCCc-hHHHHHHHHHhc---CCChHHHHHHHHHHHhh---c-----cC----hHHHHHHHhcCC
Confidence            34566677777777766655 666666777663   34556665444333220   0     00    012455566677


Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHH
Q psy9906         101 SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus       101 ~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                      ++.+|.....+++.+.       +++.++.|...+.+.|+..+.++...+
T Consensus       160 d~~Vra~A~raLG~l~-------~~~a~~~L~~al~d~~~~VR~aA~~al  202 (410)
T TIGR02270       160 DALVRAAALRALGELP-------RRLSESTLRLYLRDSDPEVRFAALEAG  202 (410)
T ss_pred             CHHHHHHHHHHHHhhc-------cccchHHHHHHHcCCCHHHHHHHHHHH
Confidence            7777777777766654       345566666666666666655555444

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=93.59  E-value=4.6  Score=42.22  Aligned_cols=157  Identities=18%  Similarity=0.157  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      +..|+++|.   +++..+|++|--.|-++..+          .|....|+.++.   +.+..+|.-|+-.|.|.+...  
T Consensus       490 IP~LV~LL~---s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~---sgd~~~q~~Aa~AL~nLi~~~--  561 (2102)
T PLN03200        490 IPPLVQLLE---TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLK---NGGPKGQEIAAKTLTKLVRTA--  561 (2102)
T ss_pred             HHHHHHHHc---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHhcc--
Confidence            344555553   67889999988888876542          355666777774   347788888888888876631  


Q ss_pred             CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-------CCCchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906          80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-------KSWPELLPTLNDMLDSQDYNVCELLPVLLPI  152 (191)
Q Consensus        80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-------~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~  152 (191)
                           +...++ .++..|...++.++..+..+++.|...-..       ..=++.++.|.+++++++...++-+..+|.-
T Consensus       562 -----d~~~I~-~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsn  635 (2102)
T PLN03200        562 -----DAATIS-QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLAD  635 (2102)
T ss_pred             -----chhHHH-HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                 223443 466777777777776666666666442210       0124788999999999988887777777744


Q ss_pred             Hhh--------------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         153 LKE--------------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       153 l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      ++.                    .+.+.+.+++..+..+++++..+..
T Consensus       636 L~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~  683 (2102)
T PLN03200        636 IFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK  683 (2102)
T ss_pred             HhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence            432                    2344567788888888888775433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.56  E-value=0.24  Score=26.60  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=20.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9906          91 QECLSAIGDPSPLIRATVGILITTIASK  118 (191)
Q Consensus        91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~  118 (191)
                      ..+++.+.++++.||..++.+++.|+++
T Consensus         3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    3 PILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            4567777788888888888888888764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=93.55  E-value=1.1  Score=30.78  Aligned_cols=101  Identities=19%  Similarity=0.110  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      +..+++++.   ++++..|..|=..|..+...          .+....++.++.   +.+..+|..|.-.|.|.......
T Consensus         9 i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           9 LPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             hHHHHHHHH---cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHccCcHH
Confidence            344455553   44678888888887776653          366777777774   35788999999999998764421


Q ss_pred             CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9906          80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA  116 (191)
Q Consensus        80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia  116 (191)
                      ....-.+..+-..+++.+.+.+..++..+..++..++
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            1111111123346666677788899999999988775

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=93.41  E-value=3.1  Score=34.79  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=26.9

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCcccc
Q psy9906          93 CLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVC  143 (191)
Q Consensus        93 ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~  143 (191)
                      +.+.+......+|...+..+..+....     +++.+.+...+.+++...+
T Consensus       185 l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr  230 (335)
T COG1413         185 LIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVR  230 (335)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHH
Confidence            334444556677777777777776554     4455555555555554433

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.84  E-value=4.9  Score=37.89  Aligned_cols=144  Identities=13%  Similarity=0.178  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHH-HHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCH
Q psy9906          24 DNLIQRAVQHKL-EQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSP  102 (191)
Q Consensus        24 d~~~r~~AE~~L-~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~  102 (191)
                      +...|++|-..+ .++..-.+...++.+++..-.+.+..+|.+.=.||+++-+.+     ++.--..-+.+.+-+.++++
T Consensus        32 n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-----P~~~lLavNti~kDl~d~N~  106 (757)
T COG5096          32 NDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-----PELALLAVNTIQKDLQDPNE  106 (757)
T ss_pred             ChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHhhccCCCH
Confidence            344555555554 466655567777777775444556666666666665544322     33333334477778889999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---h--------------cCCCcHHHH
Q psy9906         103 LIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---T--------------LFHHDWEIK  165 (191)
Q Consensus       103 ~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---~--------------l~~~~~~~r  165 (191)
                      .+|..+-..++.|   .-+.-|+.+++.+.+++.++++..+..|..++..+.+   +              +++++..+.
T Consensus       107 ~iR~~AlR~ls~l---~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi  183 (757)
T COG5096         107 EIRGFALRTLSLL---RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVI  183 (757)
T ss_pred             HHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHH
Confidence            9996655555544   4455789999999999999988777777777644432   1              245566666


Q ss_pred             HHHHHHHHHH
Q psy9906         166 ESGILALGAI  175 (191)
Q Consensus       166 ~~~i~~~~ai  175 (191)
                      ..|+.++.-|
T Consensus       184 ~nAl~sl~~i  193 (757)
T COG5096         184 ANALASLAEI  193 (757)
T ss_pred             HHHHHHHHHh
Confidence            6665554443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.74  E-value=5  Score=33.30  Aligned_cols=161  Identities=12%  Similarity=0.062  Sum_probs=104.2

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhc-CC----ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh-hhcCCCh-------h
Q psy9906          18 KESQSPDNLIQRAVQHKLEQLNT-HP----DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA-RFYEFPP-------G   84 (191)
Q Consensus        18 ~~~~s~d~~~r~~AE~~L~~~~~-~~----~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~-~W~~i~~-------~   84 (191)
                      .+..++|+.+|+.|-.-|--+.- +.    ++...+...+.   ..+..+|-.|.-.+=..+.. ....++.       .
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~---~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~  110 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQ---KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV  110 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence            46678899999999999886553 12    24444555553   34778888776444333332 2222222       2


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcH--
Q psy9906          85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDW--  162 (191)
Q Consensus        85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~--  162 (191)
                      ....+-+.+.+.+.+.++.++..+++.++++.-.+--..||+++..|+-..=++........-.||.++.+.+-....  
T Consensus       111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~  190 (298)
T PF12719_consen  111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN  190 (298)
T ss_pred             hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence            335666678888888888999999999999998885444899999988666655433344556677777776654443  


Q ss_pred             --HHHHHHHHHHHHHhhhhhh
Q psy9906         163 --EIKESGILALGAIAEVNKS  181 (191)
Q Consensus       163 --~~r~~~i~~~~ai~~~~~~  181 (191)
                        ...++.+.++..+.+..+.
T Consensus       191 Q~~l~~~f~~~l~~~~~~~~~  211 (298)
T PF12719_consen  191 QERLAEAFLPTLRTLSNAPDE  211 (298)
T ss_pred             HHHHHHHHHHHHHHHHhCccc
Confidence              3444555566666665543

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.72  E-value=4.4  Score=32.56  Aligned_cols=128  Identities=19%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCC-ChHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCC---hhHHHHHHHHHHHhh
Q psy9906          23 PDNLIQRAVQHKLEQLNTHP-DFNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFP---PGVSEFIKQECLSAI   97 (191)
Q Consensus        23 ~d~~~r~~AE~~L~~~~~~~-~~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~---~~~k~~ik~~ll~~l   97 (191)
                      ++++.....=..|-.+..+. ......++++.... +.....+.++.-++    ..-|..-+   +.-+..+....++..
T Consensus        13 ~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl----~~lw~~~~r~f~~L~~~L~~~~~r~~   88 (234)
T PF12530_consen   13 SDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLL----TLLWKANDRHFPFLQPLLLLLILRIP   88 (234)
T ss_pred             CChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHH----HHHHHhCchHHHHHHHHHHHHHhhcc
Confidence            45666666666676666544 33333333333222 22233333333222    22343211   333333333333322


Q ss_pred             ---CCC--CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh-hcCCccccchhhhHHHHHhh
Q psy9906          98 ---GDP--SPLIRATVGILITTIASKGDLKSWPELLPTLNDML-DSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        98 ---~~~--~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l-~~~~~~~~~~~l~~L~~l~e  155 (191)
                         .+.  .....-..+..+..|++..+ +.|+++++.+.+.+ ++.++...-.++..+..+|+
T Consensus        89 ~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~  151 (234)
T PF12530_consen   89 SSFSSKDEFWECLISIAASIRDICCSRP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE  151 (234)
T ss_pred             cccCCCcchHHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence               112  23444555688888998884 49999999999999 66677777888888888886

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.54  E-value=0.12  Score=40.17  Aligned_cols=70  Identities=21%  Similarity=0.284  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHhh-C---CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         103 LIRATVGILITTIASK-G---DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       103 ~ir~~~~~~i~~Ia~~-e---~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                      ++|-.+-.|+..+++. +   ..+.|+.|+|+-  ..+  ........+.++      ++|++..+|.+|+.++.++.+|
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~--~~~--~~~~~~sLlt~i------l~Dp~~kvR~aA~~~l~~lL~g   70 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDS--VLQ--GRPATPSLLTCI------LKDPSPKVRAAAASALAALLEG   70 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC--CCc--CCCCCcchhHHH------HcCCchhHHHHHHHHHHHHHHc
Confidence            3688889999999999 6   347899999987  111  111222222222      3468999999999999999999


Q ss_pred             hhhh
Q psy9906         179 NKSI  182 (191)
Q Consensus       179 ~~~~  182 (191)
                      ..+.
T Consensus        71 sk~~   74 (182)
T PF13251_consen   71 SKPF   74 (182)
T ss_pred             cHHH
Confidence            7654

>TIGR02270 conserved hypothetical protein

Probab=92.54  E-value=6.8  Score=34.34  Aligned_cols=131  Identities=15%  Similarity=-0.056  Sum_probs=87.9

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCC
Q psy9906          22 SPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS  101 (191)
Q Consensus        22 s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~  101 (191)
                      .++.+++..|--.|..... +.....|+..+.   +.+..+|..++--|-      |...     ......|+..+.+.+
T Consensus        66 d~~~ev~~~aa~al~~~~~-~~~~~~L~~~L~---d~~~~vr~aaa~ALg------~i~~-----~~a~~~L~~~L~~~~  130 (410)
T TIGR02270        66 ADEPGRVACAALALLAQED-ALDLRSVLAVLQ---AGPEGLCAGIQAALG------WLGG-----RQAEPWLEPLLAASE  130 (410)
T ss_pred             CCChhHHHHHHHHHhccCC-hHHHHHHHHHhc---CCCHHHHHHHHHHHh------cCCc-----hHHHHHHHHHhcCCC
Confidence            3566777765555543333 444677777774   456678888887774      3211     234457888888899


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCCCcHHHHHHHHHHH
Q psy9906         102 PLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFHHDWEIKESGILAL  172 (191)
Q Consensus       102 ~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~~~~~~r~~~i~~~  172 (191)
                      +.+|..+..+++.   +.     ++-.+.+...+++.++..+..+..+|..+..         .+.+.+..+|.+|+.++
T Consensus       131 p~vR~aal~al~~---r~-----~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al  202 (410)
T TIGR02270       131 PPGRAIGLAALGA---HR-----HDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAG  202 (410)
T ss_pred             hHHHHHHHHHHHh---hc-----cChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence            9998655544444   22     2234677777888888888999999877654         45678899999998877


Q ss_pred             HHH
Q psy9906         173 GAI  175 (191)
Q Consensus       173 ~ai  175 (191)
                      +-+
T Consensus       203 ~~l  205 (410)
T TIGR02270       203 LLA  205 (410)
T ss_pred             HHc
Confidence            655

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=91.44  E-value=5.5  Score=41.68  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906          42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL  121 (191)
Q Consensus        42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~  121 (191)
                      .+....|..++.   +.+..++.-|+-.|-|....+=.....-.....=..++..|...+..+++.++.+++.+++....
T Consensus       608 ~ggL~~Lv~LL~---sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~  684 (2102)
T PLN03200        608 NDALRTLIQLLS---SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE  684 (2102)
T ss_pred             cccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence            455666777764   34667777777666666542211111111111122344445555566666666666666653322


Q ss_pred             CCC-----chHHHHHHHHhhcCCccccchhhhHH
Q psy9906         122 KSW-----PELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus       122 ~~W-----pell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                      ++.     -+.++-|+++++++|....+.++..|
T Consensus       685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~AL  718 (2102)
T PLN03200        685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCAL  718 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHH
Confidence            221     23455566666665555555555554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=91.15  E-value=6.8  Score=33.77  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=110.6

Q ss_pred             CCCChHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhhCCCChhHHhHHHHHH
Q psy9906           3 WQPQEEG-LIQILQLLKESQSPDNLIQRAVQHKLEQLNT---HP--------DFNNYLIFVLTKLTSEDEPTRSLSGLIL   70 (191)
Q Consensus         3 ~~p~~~~-~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~--------~~~~~L~~il~~~~~~~~~vRq~A~i~L   70 (191)
                      |.|.++. ..+|-++..+.+|.|-+..-+|...+..+..   .|        |..+-+.+++.+  .+..-...=|+=.|
T Consensus        62 ~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~--~q~~mlqfEAaWal  139 (526)
T COG5064          62 FIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE--IQRDMLQFEAAWAL  139 (526)
T ss_pred             cCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh--cchhHHHHHHHHHH
Confidence            4455544 6788999999999999999999888887653   22        333444454421  11111222222223


Q ss_pred             HHhhh--------------------------------hhhc--C---CChhHHHHHH-----HHHHHhhCCC--CHHHHH
Q psy9906          71 KNNVR--------------------------------ARFY--E---FPPGVSEFIK-----QECLSAIGDP--SPLIRA  106 (191)
Q Consensus        71 Kn~i~--------------------------------~~W~--~---i~~~~k~~ik-----~~ll~~l~~~--~~~ir~  106 (191)
                      -|.-.                                .-|-  .   -++..|.+|-     +.+|..+.++  +-++-+
T Consensus       140 TNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR  219 (526)
T COG5064         140 TNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR  219 (526)
T ss_pred             hhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH
Confidence            22221                                1232  1   2344444433     2344444443  235556


Q ss_pred             HHHHHHHHHHhhC-CCCCCch---HHHHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcH
Q psy9906         107 TVGILITTIASKG-DLKSWPE---LLPTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDW  162 (191)
Q Consensus       107 ~~~~~i~~Ia~~e-~~~~Wpe---ll~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~  162 (191)
                      .+...++.+++-- +|-.|..   .+|.|..++-+.|++..--|+-.++|+.+                    -+.+++-
T Consensus       220 n~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa  299 (526)
T COG5064         220 NATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA  299 (526)
T ss_pred             HhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc
Confidence            6788999999887 7788975   68889999988888776666667777764                    3456677


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q psy9906         163 EIKESGILALGAIAEVNKS  181 (191)
Q Consensus       163 ~~r~~~i~~~~ai~~~~~~  181 (191)
                      .++.-+++.+|.|+.|.+.
T Consensus       300 ~iqtPalR~vGNIVTG~D~  318 (526)
T COG5064         300 KIQTPALRSVGNIVTGSDD  318 (526)
T ss_pred             cccCHHHHhhcCeeecCcc
Confidence            7888899999999988764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=90.54  E-value=9.2  Score=31.91  Aligned_cols=89  Identities=19%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHH
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQE   92 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~   92 (191)
                      +-.++...-++|..+|..|-..|.++.. ......+..++.   +.+..+|..|+-.|.+.-.       ++    --..
T Consensus        45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~-~~av~~l~~~l~---d~~~~vr~~a~~aLg~~~~-------~~----a~~~  109 (335)
T COG1413          45 ADELLKLLEDEDLLVRLSAAVALGELGS-EEAVPLLRELLS---DEDPRVRDAAADALGELGD-------PE----AVPP  109 (335)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhhch-HHHHHHHHHHhc---CCCHHHHHHHHHHHHccCC-------hh----HHHH
Confidence            3344444455678888888888777665 567777777764   4566788888774433321       11    1113


Q ss_pred             HHHhhC-CCCHHHHHHHHHHHHHHH
Q psy9906          93 CLSAIG-DPSPLIRATVGILITTIA  116 (191)
Q Consensus        93 ll~~l~-~~~~~ir~~~~~~i~~Ia  116 (191)
                      +++.+. +++..+|..++.++..+.
T Consensus       110 li~~l~~d~~~~vR~~aa~aL~~~~  134 (335)
T COG1413         110 LVELLENDENEGVRAAAARALGKLG  134 (335)
T ss_pred             HHHHHHcCCcHhHHHHHHHHHHhcC
Confidence            334444 355666655555555543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=89.96  E-value=5.3  Score=36.40  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=42.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCC----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNT-HPD----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS   86 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k   86 (191)
                      ....+|.++-. +..+.+=|-+.+-.|-+ .|+    ....++++..   ..+..||..|.=-|-..-+     -.++--
T Consensus        24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE---Ded~~iR~~aik~lp~~ck-----~~~~~v   94 (556)
T PF05918_consen   24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE---DEDVQIRKQAIKGLPQLCK-----DNPEHV   94 (556)
T ss_dssp             HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT----SSHHHHHHHHHHGGGG-------T--T-H
T ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhHHHHHH-----hHHHHH
Confidence            33444444432 34444445555554443 243    3344444442   3455565554332222111     112333


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906          87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGD  120 (191)
Q Consensus        87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~  120 (191)
                      .-|-+.|.+.|.+.++.-...+-.++..+.+.|+
T Consensus        95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~  128 (556)
T PF05918_consen   95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP  128 (556)
T ss_dssp             HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc
Confidence            4455555555665566666666666666666663

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=89.18  E-value=15  Score=32.21  Aligned_cols=160  Identities=13%  Similarity=0.193  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCCChHHHHHHHHhh----h-CCCChhHHhHHHHHHHHhhhhhhc-CCCh
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLN-THPDFNNYLIFVLTK----L-TSEDEPTRSLSGLILKNNVRARFY-EFPP   83 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~-~~~~~~~~L~~il~~----~-~~~~~~vRq~A~i~LKn~i~~~W~-~i~~   83 (191)
                      .=+.+++....|||+.+|......|..+- +.++.-.++...+.+    - .+.....--.-.+-+=..|.+.+. .+.+
T Consensus       133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~  212 (409)
T PF01603_consen  133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE  212 (409)
T ss_dssp             HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence            44677888888999999999999999854 455544443322211    0 011111111122222222233333 5778


Q ss_pred             hHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhC--------------CCCCCch----HHHHHHHHhhcCCccc-c
Q psy9906          84 GVSEFIKQECLSAIGDP-SPLIRATVGILITTIASKG--------------DLKSWPE----LLPTLNDMLDSQDYNV-C  143 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~~~-~~~ir~~~~~~i~~Ia~~e--------------~~~~Wpe----ll~~L~~~l~~~~~~~-~  143 (191)
                      +-+..++..++.+...+ -.....++..|+..+...|              ||..++.    ++..+...+..-++.. .
T Consensus       213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~  292 (409)
T PF01603_consen  213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQ  292 (409)
T ss_dssp             HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHH
Confidence            88889988888888764 4666788999999998887              2333321    5555666665443332 3


Q ss_pred             chhhhHHHHHhhhcCCCcHHHHHHHHH
Q psy9906         144 ELLPVLLPILKETLFHHDWEIKESGIL  170 (191)
Q Consensus       144 ~~~l~~L~~l~e~l~~~~~~~r~~~i~  170 (191)
                      ...-.+++.+.+.+-++...+-+.|+.
T Consensus       293 ~i~~~lf~~la~ci~S~h~qVAErAl~  319 (409)
T PF01603_consen  293 KIMVPLFKRLAKCISSPHFQVAERALY  319 (409)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            334445577777777777777777654

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=88.89  E-value=2.1  Score=33.15  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      .+++ .+++...+++..+|..+.+++..+.+...-+-| +-+|.|+.+.+++++..+..|..++..+.|.
T Consensus         8 ryl~-~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK   75 (187)
T PF12830_consen    8 RYLK-NILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSPNPSIRSRAYQLLKELHEK   75 (187)
T ss_pred             HHHH-HHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence            3444 778888889999999999999999999966554 6899999999999999999999999888874

>KOG2062|consensus

Probab=88.84  E-value=9.4  Score=35.96  Aligned_cols=85  Identities=19%  Similarity=0.175  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh----------
Q psy9906          87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE----------  155 (191)
Q Consensus        87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e----------  155 (191)
                      ..||..|--+..+.+.-||+.+..+|+-|.-.|     |+.+|..++++..+ |++.+.++..+|.+.|-          
T Consensus       554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~l  628 (929)
T KOG2062|consen  554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINL  628 (929)
T ss_pred             hhHHHhhcccccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHH
Confidence            466644444577889999999888888887777     67777778877655 88999999999988884          


Q ss_pred             --h-cCCCcHHHHHHHHHHHHHHh
Q psy9906         156 --T-LFHHDWEIKESGILALGAIA  176 (191)
Q Consensus       156 --~-l~~~~~~~r~~~i~~~~ai~  176 (191)
                        . ..++.--+|..|+.+++.|.
T Consensus       629 Lepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  629 LEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             HhhhhcChHHHHHHHHHHHHHHHH
Confidence              1 22344558888877777664

>KOG1059|consensus

Probab=88.81  E-value=14  Score=34.71  Aligned_cols=76  Identities=18%  Similarity=0.272  Sum_probs=53.9

Q ss_pred             CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhh
Q psy9906          57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLD  136 (191)
Q Consensus        57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~  136 (191)
                      +.-+-+|.=|..++=+.+-+|    ++..|..+. .+.+-|-++++.|.+++..+|.++|+.. |+.+=.|-|.++.++.
T Consensus       155 sskpYvRKkAIl~lykvFLkY----PeAlr~~Fp-rL~EkLeDpDp~V~SAAV~VICELArKn-PknyL~LAP~ffkllt  228 (877)
T KOG1059|consen  155 SSKPYVRKKAILLLYKVFLKY----PEALRPCFP-RLVEKLEDPDPSVVSAAVSVICELARKN-PQNYLQLAPLFYKLLV  228 (877)
T ss_pred             cCchHHHHHHHHHHHHHHHhh----hHhHhhhHH-HHHHhccCCCchHHHHHHHHHHHHHhhC-CcccccccHHHHHHHh
Confidence            344557766665554444444    334443333 6777788999999999999999999999 6677778888888776


Q ss_pred             cC
Q psy9906         137 SQ  138 (191)
Q Consensus       137 ~~  138 (191)
                      .+
T Consensus       229 tS  230 (877)
T KOG1059|consen  229 TS  230 (877)
T ss_pred             cc
Confidence            55

>KOG0166|consensus

Probab=88.71  E-value=11  Score=34.09  Aligned_cols=164  Identities=16%  Similarity=0.122  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---C--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTH---P--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR   77 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~---~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~   77 (191)
                      ....+-..+....|.|.+.+-.|-+.+..+...   |        |...-+...+.  .+.++.++.-|+=.|.|.-.-.
T Consensus        64 ~~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~--~~~~~~lq~eAAWaLTnIAsgt  141 (514)
T KOG0166|consen   64 QASNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS--RDDNPTLQFEAAWALTNIASGT  141 (514)
T ss_pred             HhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc--cCCChhHHHHHHHHHHHHhcCc
Confidence            344466778888899988888888888765542   2        33444555553  3456788888888888776522


Q ss_pred             hcCCChhHHHHHHHH----HHHhhCCCCHHHHHHHHHHHHHHHhhCCC--CC--CchHHHHHHHHhhcCCc-cccchhhh
Q psy9906          78 FYEFPPGVSEFIKQE----CLSAIGDPSPLIRATVGILITTIASKGDL--KS--WPELLPTLNDMLDSQDY-NVCELLPV  148 (191)
Q Consensus        78 W~~i~~~~k~~ik~~----ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~--~~--Wpell~~L~~~l~~~~~-~~~~~~l~  148 (191)
                          ++..+..+...    ++.++.+++..|+.++..+++.||..-+.  +.  =...++-|..++..++. .....+.-
T Consensus       142 ----se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW  217 (514)
T KOG0166|consen  142 ----SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATW  217 (514)
T ss_pred             ----hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence                23333333332    55667789999999999999999987621  11  13456667777765543 33445555


Q ss_pred             HHHHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         149 LLPILKE--------------------TLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       149 ~L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                      +|+-+|.                    -+.+.|..+...|.-|+.-+.+|
T Consensus       218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            5555554                    34445555555555555555544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=88.47  E-value=0.14  Score=31.20  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCC---CCCchHHHHHHHHhhcC
Q psy9906         102 PLIRATVGILITTIASKGDL---KSWPELLPTLNDMLDSQ  138 (191)
Q Consensus       102 ~~ir~~~~~~i~~Ia~~e~~---~~Wpell~~L~~~l~~~  138 (191)
                      +.+|...+.+++.++...+.   ..=|++++.|..+++++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~   40 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD   40 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC
Confidence            35677777777765544411   12244444444444433

...

>KOG1060|consensus

Probab=88.10  E-value=19  Score=34.22  Aligned_cols=142  Identities=16%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-------
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQ-LNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-------   80 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~-~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-------   80 (191)
                      ..++|.++|..-  .| .....|-.++-. +.+..|...++-.+.-+-.+.+..+|.+--+||-++-...-+-       
T Consensus        36 ~~~dL~~lLdSn--kd-~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSInt  112 (968)
T KOG1060|consen   36 RHDDLKQLLDSN--KD-SLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINT  112 (968)
T ss_pred             ChHHHHHHHhcc--cc-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHH
Confidence            345666666542  23 344455555554 3343455555555554434567788888888888877642211       


Q ss_pred             ----CChhHHHHHHHHHH--------------------HhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhh
Q psy9906          81 ----FPPGVSEFIKQECL--------------------SAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLD  136 (191)
Q Consensus        81 ----i~~~~k~~ik~~ll--------------------~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~  136 (191)
                          +.+.. ..||..-|                    ++..++.+.||+.+|.+|-++-+.| |++-++|...+-.++.
T Consensus       113 fQk~L~DpN-~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~I~~LLa  190 (968)
T KOG1060|consen  113 FQKALKDPN-QLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEVIKKLLA  190 (968)
T ss_pred             HHhhhcCCc-HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHHHHHHhc
Confidence                11000 12222222                    2223578999999999999999888 4555689888889998


Q ss_pred             cCCccccchhhhHHHHHhh
Q psy9906         137 SQDYNVCELLPVLLPILKE  155 (191)
Q Consensus       137 ~~~~~~~~~~l~~L~~l~e  155 (191)
                      +.++...-+|..++..+|-
T Consensus       191 D~splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  191 DRSPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             CCCCcchhHHHHHHHHhch
Confidence            8888888888888888875

>KOG0211|consensus

Probab=87.86  E-value=22  Score=33.78  Aligned_cols=150  Identities=21%  Similarity=0.157  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhhcCCC---hHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCC
Q psy9906          25 NLIQRAVQHKLEQLNTHPD---FNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDP  100 (191)
Q Consensus        25 ~~~r~~AE~~L~~~~~~~~---~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~  100 (191)
                      -.+|.+.-+++-....+-+   |...+..+... ..+....+|-.|+-.|+..+... +  .+..+..+=..++....++
T Consensus       493 wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~-G--~~w~~~~~i~k~L~~~~q~  569 (759)
T KOG0211|consen  493 WRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF-G--SEWARLEEIPKLLAMDLQD  569 (759)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh-C--cchhHHHhhHHHHHHhcCc
Confidence            3455555555555444333   22222233210 12345579999998888887642 1  1222233333555555566


Q ss_pred             CHHHHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHhhcCCccccchhhhHHHHHhh----------------hc-CCCcH
Q psy9906         101 SPLIRATVGILITTIASKGDLK-SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE----------------TL-FHHDW  162 (191)
Q Consensus       101 ~~~ir~~~~~~i~~Ia~~e~~~-~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----------------~l-~~~~~  162 (191)
                      +...|.....++..++..-... .=.+|+|.+.++..+++++.+-++.+.|..+..                .+ .+.+.
T Consensus       570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~  649 (759)
T KOG0211|consen  570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL  649 (759)
T ss_pred             ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc
Confidence            7899999999999888887433 235799999999999999999888888855543                11 34678


Q ss_pred             HHHHHHHHHHHHHhh
Q psy9906         163 EIKESGILALGAIAE  177 (191)
Q Consensus       163 ~~r~~~i~~~~ai~~  177 (191)
                      ++|..|+.|+|.|..
T Consensus       650 dvr~~a~~a~~~i~l  664 (759)
T KOG0211|consen  650 DVRYRAILAFGSIEL  664 (759)
T ss_pred             chhHHHHHHHHHHHH
Confidence            889999999998764

>KOG1242|consensus

Probab=87.70  E-value=22  Score=32.50  Aligned_cols=94  Identities=20%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHH-------------
Q psy9906          87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPIL-------------  153 (191)
Q Consensus        87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l-------------  153 (191)
                      ..+...++..+.+..+.+|.....++..|.+.-++..=+.++|.++..+....|....+++.+++.+             
T Consensus       215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp  294 (569)
T KOG1242|consen  215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP  294 (569)
T ss_pred             HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh
Confidence            3455566666677889999999999999999998888888888888777665676666666655443             


Q ss_pred             ------hhhcCCCcHHHHHHHHHHHH---HHhhhhh
Q psy9906         154 ------KETLFHHDWEIKESGILALG---AIAEVNK  180 (191)
Q Consensus       154 ------~e~l~~~~~~~r~~~i~~~~---ai~~~~~  180 (191)
                            .|-+.+...++|.+++.++-   .+++.++
T Consensus       295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d  330 (569)
T KOG1242|consen  295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD  330 (569)
T ss_pred             HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence                  34566778899998777554   4554443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=87.20  E-value=2.2  Score=33.20  Aligned_cols=57  Identities=18%  Similarity=0.262  Sum_probs=36.6

Q ss_pred             HHhHHHHHHHHhhhh--------hhcCCChhH---HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhh
Q psy9906          62 TRSLSGLILKNNVRA--------RFYEFPPGV---SEFIKQECLSA-IGDPSPLIRATVGILITTIASK  118 (191)
Q Consensus        62 vRq~A~i~LKn~i~~--------~W~~i~~~~---k~~ik~~ll~~-l~~~~~~ir~~~~~~i~~Ia~~  118 (191)
                      +|+.|...|.-.++.        +|..+=|+.   ...-...|+.. +.++++++|..++.+++.+...
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g   70 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG   70 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence            677777766555553        787644433   33344456664 4568888988888888877544

>KOG1824|consensus

Probab=87.06  E-value=5.3  Score=38.55  Aligned_cols=119  Identities=17%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---CCCCchHHHHHH
Q psy9906          56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD---LKSWPELLPTLN  132 (191)
Q Consensus        56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---~~~Wpell~~L~  132 (191)
                      .+..+..|..+...+|=.|.-+-..+++-.|..|- ..+.++.+++..||+.+-.++...+..-+   .+-.||++|.|.
T Consensus       976 ~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig-~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen  976 RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIG-DFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred             cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHH-HHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence            46677888888888877777666667777666665 44567788999999999888888887663   245666666666


Q ss_pred             HHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         133 DMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       133 ~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                      +-..-.....++.=|==|+    +..+...+.|.+|..++-..+|.+
T Consensus      1055 ~eTkvrkelIreVeMGPFK----H~VDdgLd~RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1055 SETKVRKELIREVEMGPFK----HTVDDGLDLRKAAFECMYTLLDSC 1097 (1233)
T ss_pred             HhhhhhHhhhhhhcccCcc----ccccchHHHHHHHHHHHHHHHHhh
Confidence            5433221111111111111    122334566666666665555543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=86.25  E-value=1.4  Score=26.52  Aligned_cols=54  Identities=9%  Similarity=0.019  Sum_probs=34.6

Q ss_pred             hHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9906          61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTI  115 (191)
Q Consensus        61 ~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I  115 (191)
                      .+|..|+..|-+.....-..+ ......+-..|+..|.++++.||..++.+++.|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578888888876333221111 223334445666777788889999999988764

...

>KOG1949|consensus

Probab=85.52  E-value=8.5  Score=36.13  Aligned_cols=135  Identities=16%  Similarity=0.096  Sum_probs=86.6

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhh--cCCCh------------HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906          18 KESQSPDNLIQRAVQHKLEQLN--THPDF------------NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP   83 (191)
Q Consensus        18 ~~~~s~d~~~r~~AE~~L~~~~--~~~~~------------~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~   83 (191)
                      ++...||-++|..|-.-+-++-  ..||.            ..+|..++   .+..+.||..|..-+-+.+...|.-+|+
T Consensus       181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL---~d~~p~VRS~a~~gv~k~~s~fWe~iP~  257 (1005)
T KOG1949|consen  181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLL---EDPYPMVRSTAILGVCKITSKFWEMIPP  257 (1005)
T ss_pred             HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence            3445678888888766665544  24554            23344555   3567889999999999999999999988


Q ss_pred             hHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          84 GVSEFIKQECLSAIGD-PSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      ..-..+-..+..-+.. +...||-..-..+..|+..- ...-...++|.+-..+.+.+...+-++...|..+++
T Consensus       258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            7766666677777764 56688877777777776443 112223455555555555444444444445555554

>KOG1061|consensus

Probab=85.31  E-value=33  Score=32.27  Aligned_cols=144  Identities=17%  Similarity=0.197  Sum_probs=98.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-------------
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-------------   77 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-------------   77 (191)
                      ++.++-.+..+.-+..|++|-+..-..-. -.|-...+-+++......+...+.+.=+|+.|+-..+             
T Consensus        14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~k   93 (734)
T KOG1061|consen   14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLK   93 (734)
T ss_pred             hchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhc
Confidence            33344444434344677777666654443 2444555555554444557778888888888876521             


Q ss_pred             ------hcC----------C-ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCC
Q psy9906          78 ------FYE----------F-PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQD  139 (191)
Q Consensus        78 ------W~~----------i-~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~  139 (191)
                            |.-          + -+..-+++-+.+..++.+.++.+|+.++.+++.+...+.. ..=.++++.|.+++.++|
T Consensus        94 D~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~  173 (734)
T KOG1061|consen   94 DCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSN  173 (734)
T ss_pred             cCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCC
Confidence                  110          1 2444557777888888999999999999999999988843 223469999999999889


Q ss_pred             ccccchhhhHHHHHhh
Q psy9906         140 YNVCELLPVLLPILKE  155 (191)
Q Consensus       140 ~~~~~~~l~~L~~l~e  155 (191)
                      +..+-.++..|..+.+
T Consensus       174 p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  174 PMVVANALAALSEIHE  189 (734)
T ss_pred             chHHHHHHHHHHHHHH
Confidence            8899999999988876

>KOG1943|consensus

Probab=85.17  E-value=12  Score=36.62  Aligned_cols=131  Identities=15%  Similarity=0.033  Sum_probs=78.5

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH-
Q psy9906          18 KESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLS-   95 (191)
Q Consensus        18 ~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~-   95 (191)
                      .+.++++-+.|+.|-+.|++.-. +++|.--. .++....-.....|+=+-..+...|..+     +.-++-+-+.++. 
T Consensus       478 ~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi-~Lis~~dy~sV~~rsNcy~~l~~~ia~~-----~~y~~~~f~~L~t~  551 (1133)
T KOG1943|consen  478 VALFDREVNCRRAASAALQENVGRQGNFPHGI-SLISTIDYFSVTNRSNCYLDLCVSIAEF-----SGYREPVFNHLLTK  551 (1133)
T ss_pred             HHhcCchhhHhHHHHHHHHHHhccCCCCCCch-hhhhhcchhhhhhhhhHHHHHhHHHHhh-----hhHHHHHHHHHHhc
Confidence            45588899999999999997664 45552221 2221101123344554445555554432     1112222222222 


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906          96 AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK  154 (191)
Q Consensus        96 ~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~  154 (191)
                      -+..=+..+|-..+.++..+...++...=...+|.++...-+.+.+.++|.......+.
T Consensus       552 Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~  610 (1133)
T KOG1943|consen  552 KVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI  610 (1133)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence            24455899999999999999888843333356777777777788888777776664443

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=84.95  E-value=5.4  Score=26.87  Aligned_cols=66  Identities=17%  Similarity=0.263  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906          86 SEFIKQECLSAIGD-PSPLIRATVGILITTIASKGD---LKSWPELLPTLNDMLDSQDYNVCELLPVLLPI  152 (191)
Q Consensus        86 k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~---~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~  152 (191)
                      +..+|. +...+.+ ++..+|..+-.|+..+...-.   ...||.++..+.....+++...+..|..+++.
T Consensus        16 ~~fL~P-f~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~   85 (86)
T PF09324_consen   16 KDFLKP-FEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL   85 (86)
T ss_pred             HHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence            344443 3334443 678888888888888877552   36799999999999888887777887777654

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=84.04  E-value=22  Score=29.08  Aligned_cols=138  Identities=18%  Similarity=0.122  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC---------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh
Q psy9906           7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP---------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR   77 (191)
Q Consensus         7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~---------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~   77 (191)
                      ++.++.|+.+|+.+-  |+..+..|-..+-.....|         |-...+..++   .+.++.+|.-|.-.|.|.-   
T Consensus        11 ~~~l~~Ll~lL~~t~--dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL---~~p~~~vr~~AL~aL~Nls---   82 (254)
T PF04826_consen   11 AQELQKLLCLLESTE--DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLL---NDPNPSVREKALNALNNLS---   82 (254)
T ss_pred             HHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHc---CCCChHHHHHHHHHHHhcC---
Confidence            345888888887754  5578888777776654433         2233333333   3567788887877776642   


Q ss_pred             hcCCChhHHHHHHHHHHHhhC----C-CCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCccccchhhhHHH
Q psy9906          78 FYEFPPGVSEFIKQECLSAIG----D-PSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDYNVCELLPVLLP  151 (191)
Q Consensus        78 W~~i~~~~k~~ik~~ll~~l~----~-~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~  151 (191)
                         .+.+.+..||..+-+.+.    . -+..++...-.++..+...+ +..-=...+|.++.++.+++...+.-++.+|-
T Consensus        83 ---~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~  159 (254)
T PF04826_consen   83 ---VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLV  159 (254)
T ss_pred             ---CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence               334555566655444432    2 25666666666677765444 33333457888889999888888777887775


Q ss_pred             HHhh
Q psy9906         152 ILKE  155 (191)
Q Consensus       152 ~l~e  155 (191)
                      -+.+
T Consensus       160 nLS~  163 (254)
T PF04826_consen  160 NLSE  163 (254)
T ss_pred             Hhcc
Confidence            5543

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=83.80  E-value=32  Score=30.89  Aligned_cols=82  Identities=17%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhc----CCC---hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNT----HPD---FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV   85 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~----~~~---~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~   85 (191)
                      |..+|...-||+..+|+..-+.|.++.+    .|+   -...|+..+. ..+.+..+|.++.++++..+.    .++.++
T Consensus        25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~-~~~~s~~vrnfsliyi~~g~~----Rl~~~e   99 (501)
T PF13001_consen   25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYK-EPSDSSFVRNFSLIYIEMGFD----RLDDEE   99 (501)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHh-CCCCchHHHHHHHHHHHHhhh----cCCHHH
Confidence            5667788889999999999999998764    244   3666777775 344578899999999876654    678999


Q ss_pred             HHHHHHHHHHhhCC
Q psy9906          86 SEFIKQECLSAIGD   99 (191)
Q Consensus        86 k~~ik~~ll~~l~~   99 (191)
                      |..+=..+++++..
T Consensus       100 ~~~llP~ll~~is~  113 (501)
T PF13001_consen  100 RRELLPSLLKGISK  113 (501)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999999999984

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG1060|consensus

Probab=82.81  E-value=6.8  Score=37.08  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchh-hhHHHHHhh--------------
Q psy9906          92 ECLSAIGD-PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELL-PVLLPILKE--------------  155 (191)
Q Consensus        92 ~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~-l~~L~~l~e--------------  155 (191)
                      .|.+.|.+ .+...+.+...+|+.||+-+   +-.+++|.++..+.+.|...+... +++++|-++              
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~---dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk  115 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGK---DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQK  115 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHh
Confidence            34455554 46666777888888888766   356789999988888876553333 334455554              


Q ss_pred             hcCCCcHHHHHHHHHHHHHH
Q psy9906         156 TLFHHDWEIKESGILALGAI  175 (191)
Q Consensus       156 ~l~~~~~~~r~~~i~~~~ai  175 (191)
                      .+.+++..+|-.|++++..|
T Consensus       116 ~L~DpN~LiRasALRvlSsI  135 (968)
T KOG1060|consen  116 ALKDPNQLIRASALRVLSSI  135 (968)
T ss_pred             hhcCCcHHHHHHHHHHHHhc
Confidence            67889999999999988875

>KOG0213|consensus

Probab=81.75  E-value=50  Score=31.59  Aligned_cols=31  Identities=10%  Similarity=0.142  Sum_probs=18.6

Q ss_pred             hHHHHHHHHhhhCCCChhHHhHHHHHHHHhh
Q psy9906          44 FNNYLIFVLTKLTSEDEPTRSLSGLILKNNV   74 (191)
Q Consensus        44 ~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i   74 (191)
                      ....+..++-...+.++.+||.|+-+.-...
T Consensus       797 lpqi~stiL~rLnnksa~vRqqaadlis~la  827 (1172)
T KOG0213|consen  797 LPQICSTILWRLNNKSAKVRQQAADLISSLA  827 (1172)
T ss_pred             hHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            3333444443345678889998886655444

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.38  E-value=5.9  Score=28.61  Aligned_cols=75  Identities=15%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906          44 FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD  120 (191)
Q Consensus        44 ~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~  120 (191)
                      ....|..++.  ++.++.+-..|+-=+-.+++.+-....--.+-..|..+++.|.++++.||..+-.++..+..+-|
T Consensus        44 llk~L~~lL~--~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w  118 (119)
T PF11698_consen   44 LLKKLIKLLD--KSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNW  118 (119)
T ss_dssp             HHHHHHHHH---SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHc--cCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence            4667888884  34477777778877777777653332223455789999999999999999999999999987654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0212|consensus

Probab=80.70  E-value=22  Score=32.50  Aligned_cols=129  Identities=16%  Similarity=0.203  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCC--hHHHHHHHHhh----hCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906           9 GLIQILQLLKESQSP-DNLIQRAVQHKLEQLNTHPD--FNNYLIFVLTK----LTSEDEPTRSLSGLILKNNVRARFYEF   81 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~~~~--~~~~L~~il~~----~~~~~~~vRq~A~i~LKn~i~~~W~~i   81 (191)
                      ++..++.+|..-+.. ++.+|.---.-|..+-..|+  ++.|+-.++.-    .+.....||.++-..+-+++..-=+. 
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~-  242 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS-  242 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-
Confidence            478889999887665 88899999999998888787  45665554421    24567889999999888877642221 


Q ss_pred             Chh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHhhcC
Q psy9906          82 PPG-VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW---PELLPTLNDMLDSQ  138 (191)
Q Consensus        82 ~~~-~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W---pell~~L~~~l~~~  138 (191)
                      |.. +...+-+.++.-+.++++.++.++-.-|.++++.-+++--   ++.+..++-++.+.
T Consensus       243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~  303 (675)
T KOG0212|consen  243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT  303 (675)
T ss_pred             ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC
Confidence            111 3334455666677788899998887777777776654332   33444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
2h4m_A	865	Karyopherin Beta2TRANSPORTIN-M9nls Length = 865		4e-55
2h4m_A	865	Karyopherin Beta2TRANSPORTIN-M9nls Length = 865		4e-09
2qmr_A	890	Karyopherin Beta2TRANSPORTIN Length = 890		5e-55
2qmr_A	890	Karyopherin Beta2TRANSPORTIN Length = 890		4e-09
2ot8_A	852	Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len		6e-55
2ot8_A	852	Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len		4e-09
1qbk_B	890	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-54
1qbk_B	890	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		4e-09

>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865

Iteration: 1
 Score =  210 bits (534), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3   WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WP+LLP L  +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146

>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
           ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 368 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 401

>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890

Iteration: 1
 Score =  209 bits (533), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3   WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WP+LLP L  +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146

>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
           ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 393 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 426

>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852

Iteration: 1
 Score =  209 bits (533), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3   WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WP+LLP L  +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146

>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
           ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388

>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890

Iteration: 1
 Score =  209 bits (531), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3   WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+G        KESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
           +WP+LLP L  +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146

>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
           ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 393 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 426

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-46
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	8e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-26
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-25
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	5e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-23
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-04
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	1e-19
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	8e-13
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-12
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	7e-09
2x19_B	963	Importin-13; nuclear transport, protein transport;	7e-08
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	8e-08
2x1g_F	971	Cadmus; transport protein, developmental protein,	8e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-05

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score =  160 bits (405), Expect = 6e-46
 Identities = 113/165 (68%), Positives = 131/165 (79%), Gaps = 1/165 (0%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
             W+P E+GL QILQLLKESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDE
Sbjct: 3   YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDE 62

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
           PTRSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+
Sbjct: 63  PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE 122

Query: 121 LKSWPELLPTLNDMLDSQDYNVCEL-LPVLLPILKETLFHHDWEI 164
           L++WP+LLP L  +LDS+DYN CE     L  I +++    D ++
Sbjct: 123 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 167

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 17/197 (8%)

Query: 2   AWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQL------NTHPDFNNYLIFVLTKL 55
           A     +  I+   L   +   +  +++ V   L  L         P  +N + ++L + 
Sbjct: 208 ALMLHIDSFIE--NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRT 265

Query: 56  TSEDEPTRS-----LSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGI 110
             +DE            L  +   +       P +   +      +  D   L     G 
Sbjct: 266 QDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLK----GD 321

Query: 111 LITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGIL 170
           +         +  W     +   +    +    ELLP +LP+LKE LFHH+W +KESGIL
Sbjct: 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGIL 381

Query: 171 ALGAIAEVNKSIGLKLL 187
            LGAIAE      +  L
Sbjct: 382 VLGAIAEGCMQGMIPYL 398

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score =  103 bits (257), Expect = 4e-26
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
           +++ +L+++ SPD L   A Q  LE+      P F   L  VL       +  R  +GL 
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 60

Query: 70  LKNNVRAR-----------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
           +KN++ ++           +          +K   L  +G  +    +    +     ++
Sbjct: 61  IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120

Query: 119 GDLKSWPELLPTLNDMLDSQDYNV 142
             +  WPEL+P L   + + +   
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTE 144

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score =  101 bits (251), Expect = 2e-25
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 16/176 (9%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
           +++ +L+++ SPD L   A Q  LE+      P F   L  VL       +  R  +GL 
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 60

Query: 70  LKNNVRAR-----------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
           +KN++ ++           +          +K   L  +G  +    +    +     ++
Sbjct: 61  IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120

Query: 119 GDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK--ETLFHHDWEIKESGILAL 172
             +  WPEL+P L   + + +         L  I    + +     + K + IL  
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLK 185
           +++P +LP +KE + + DW  +++ ++A G I E  +   LK
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 96.8 bits (240), Expect = 1e-23
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 42/211 (19%)

Query: 12  QILQLLKES-QSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGL 68
           +  QLL+ S  SPD  I+   + +L++L  +    F      VL    +     R L+ L
Sbjct: 5   EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAAL 63

Query: 69  ILKNNVRAR------------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116
            LKN + ++              +  P     IK   L+A+    P I      LI  IA
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA 123

Query: 117 SK-GDLKSWPELLPTLNDMLDSQD------------YNVCE------------LLPVLLP 151
                  +WPEL+  + D   ++               +CE               +L+ 
Sbjct: 124 DIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIA 183

Query: 152 ILKETLF-HHDWEIKESGILALGAIAEVNKS 181
           I++          ++ + + AL       K+
Sbjct: 184 IVQGAQSTETSKAVRLAALNALADSLIFIKN 214

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 27/202 (13%), Positives = 64/202 (31%), Gaps = 37/202 (18%)

Query: 12  QILQLLKES-QSPDNLIQRAVQHKLEQLNTH------PDFNNYLIFVLTKLTSEDEPTRS 64
            ++Q++ E+ Q+ D  +Q A    L ++ +       P     L  +            +
Sbjct: 224 YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVA 283

Query: 65  LSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW 124
              +           EF   + E            P   +++    L +      +L + 
Sbjct: 284 SMTV-----------EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL 332

Query: 125 PELLPTLNDMLDSQDYNVC----------------ELLPVLLPILKETLFHHDWEIKESG 168
              L   N+  +  D+NV                  +L  +L  +++ +   +W  +E+ 
Sbjct: 333 ---LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAA 389

Query: 169 ILALGAIAEVNKSIGLKLLCSS 190
           ++A G+I +    +        
Sbjct: 390 VMAFGSIMDGPDKVQRTYYVHQ 411

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960

 Score = 85.0 bits (209), Expect = 1e-19
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 10/153 (6%)

Query: 10  LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
           L  + + L ES        +  +  L QL T   F   L+ V+   T+    TR    L 
Sbjct: 4   LETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALF 60

Query: 70  LKNNVRARF------YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS 123
            KN ++ ++      +  P    E IK+E +  +      ++  +G  I++IA       
Sbjct: 61  FKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR 120

Query: 124 WPELLPTLNDMLDSQDYNVCE-LLPVLLPILKE 155
           WP LL  L   L + D    + +L V   I K 
Sbjct: 121 WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073

 Score = 64.9 bits (157), Expect = 8e-13
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
            +  ++      +   QR  Q  L  L  HPD    +  +L    S++  T+     IL+
Sbjct: 29  LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEF--SQNMNTKYYGLQILE 86

Query: 72  NNVRARFYEFPPGVSEFIKQECLSAIG---------DPSPLIRATVGILITTIASKGDLK 122
           N ++ R+   P    E IK+  +  I          +   +    + +++  I  +   K
Sbjct: 87  NVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK 146

Query: 123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHD 161
            WP  +  +         ++C+   V+L +L E +F   
Sbjct: 147 HWPTFISDIVGAS-RTSESLCQNNMVILKLLSEEVFDFS 184

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049

 Score = 63.8 bits (154), Expect = 2e-12
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 12/157 (7%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
            + Q++        + Q+  Q  L +   +PD       +L    S +  ++ ++  IL 
Sbjct: 17  LLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILD 74

Query: 72  NNVRARFYEFPPGVSEFIKQECLSAIGD---------PSPLIRATVGILITTIASKGDLK 122
             +  ++   P      I+   +  I               +     + +  I  +   +
Sbjct: 75  KLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ 134

Query: 123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH 159
           +WPE +P L     S   NVCE   ++L +L E +F 
Sbjct: 135 NWPEFIPELIGSS-SSSVNVCENNMIVLKLLSEEVFD 170

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 11/171 (6%)

Query: 1   MAWQPQEEGLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSE 58
           MA         Q+++ +     P      +       E+              L +  ++
Sbjct: 1   MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAE-KTQ 59

Query: 59  DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAI-------GDPSPLIRATVGIL 111
               R     IL++ V+ R+         ++K   +  I        +    I+  +  +
Sbjct: 60  VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRI 119

Query: 112 ITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDW 162
           +  +  +   + WP++L  L+ +   Q     EL+  +L  L E +     
Sbjct: 120 VVEMIKREWPQHWPDMLIELDTLS-KQGETQTELVMFILLRLAEDVVTFQT 169

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963

 Score = 50.7 bits (120), Expect = 7e-08
 Identities = 20/160 (12%), Positives = 54/160 (33%), Gaps = 8/160 (5%)

Query: 2   AWQPQEEGLIQILQLLKE-SQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
           A    +  +  + + L +    P+   +   Q  L Q    P   ++   +L     +  
Sbjct: 15  AAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQ--PDKVP 72

Query: 61  PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS---PLIRATVGILITTIAS 117
             +      L   +   + + P    E +K +  + I   +    ++   + + + ++A 
Sbjct: 73  EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132

Query: 118 KGDLKSWPELLPTLNDMLDSQD--YNVCELLPVLLPILKE 155
                +WP  +  +  +  ++D   +       LL +L  
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980

 Score = 50.7 bits (120), Expect = 8e-08
 Identities = 21/158 (13%), Positives = 49/158 (31%), Gaps = 8/158 (5%)

Query: 12  QILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
            +   ++ +  P    +I++     +  L +          + ++ T     TR +    
Sbjct: 7   DVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQT 66

Query: 70  LKNNVRARFYEFPPGVSEFIKQECLSAI-----GDPSPLIRATVGILITTIASKGDLKSW 124
           L   VR    E      + I+    S I      D    I   V  L+T +  +    +W
Sbjct: 67  LSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW 126

Query: 125 PELLPTLNDMLDSQDY-NVCELLPVLLPILKETLFHHD 161
            +   +L  ++ +            +L  + + +    
Sbjct: 127 NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSL 164

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971

 Score = 47.3 bits (111), Expect = 8e-07
 Identities = 19/149 (12%), Positives = 53/149 (35%), Gaps = 7/149 (4%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
           ++ + +      ++  Q      L      P    +   ++     + +  +    + L 
Sbjct: 8   RLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQ--LGKSQEVQFFGAITLH 65

Query: 72  NNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIAS--KGDLKSWPELLP 129
           + +   ++E PP   E +KQ+ L +I   +   +  +  L  ++ +     L  WP  + 
Sbjct: 66  SKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIE 125

Query: 130 TLNDML---DSQDYNVCELLPVLLPILKE 155
            + +        + +    L ++L +L  
Sbjct: 126 EVINTFQNQRMPNVSADVQLWIMLEVLTA 154

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 16/107 (14%), Positives = 40/107 (37%)

Query: 51  VLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGI 110
           +L K+TS D+  R ++   L   ++    +        + +  L  + D +  ++     
Sbjct: 11  LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 70

Query: 111 LITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157
            +  + SK        ++ TL   + S    + ++  + L  +   L
Sbjct: 71  CLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 117

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 16/178 (8%)

Query: 13  ILQLLKESQSPDNLIQRAVQHKLEQLNTH---PDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
           +  +LK  +  +  +Q      L  L +          +  + T + S+ E  R +S + 
Sbjct: 50  VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIG 109

Query: 70  LKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLP 129
           LK  +                    S     + + +   G L + IA + D+    E L 
Sbjct: 110 LKTVIGEL-------------PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156

Query: 130 TLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLL 187
            + DML  Q   +    P +L  L   L      +++  I+ALG +     +I    L
Sbjct: 157 IMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 24/198 (12%)

Query: 5   PQEEGLIQILQLLKE-SQSPDNLIQRAVQHKLEQLNTH---PDFNNYLIFVLTKLTSEDE 60
           PQE+    ++  L++ ++     ++  V  K  +L            L+     L  + E
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294

Query: 61  P-TRSLSGLILKNNVRARFYEFPPGVS-EFIKQECLSAIGDPSPLIRATVGILITTIASK 118
              R+ +   +K        +    V    I       + D +  +++ +  +I  ++  
Sbjct: 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354

Query: 119 -GDLKSWPELLPTLNDMLDSQDYNVC-----------------ELLPVLLPILKETLFHH 160
            G   +   LLP     L  +   V                  +L   LLP + E     
Sbjct: 355 LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA 414

Query: 161 DWEIKESGILALGAIAEV 178
            W ++ + I  +  +A  
Sbjct: 415 KWRVRLAIIEYMPLLAGQ 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.97
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.93
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.91
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.89
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.89
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.89
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.88
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.86
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.84
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.83
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.83
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.76
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.23
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.71
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.49
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.23
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.2
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.19
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.17
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.08
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.98
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.93
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.87
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.86
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.85
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.79
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.78
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.74
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.71
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.69
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.69
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.66
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.65
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.65
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.6
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.44
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.22
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.21
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.15
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.12
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.91
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.78
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	96.77
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.72
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.52
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.46
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.45
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.37
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.25
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	96.22
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	96.14
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.02
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	95.76
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	95.72
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.6
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	95.27
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.77
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	94.7
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	93.98
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	93.82
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	93.65
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	93.64
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	92.68
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	91.71
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	91.54
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	90.41
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	89.56
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	88.88
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	88.79
3nmz_A	458	APC variant protein; protein-protein complex, arma	88.15
3nmz_A	458	APC variant protein; protein-protein complex, arma	88.05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	86.97
2x19_B	963	Importin-13; nuclear transport, protein transport;	86.66
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.63
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	86.61
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	86.38
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	86.01
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	85.66
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	84.99
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	83.32
2x1g_F	971	Cadmus; transport protein, developmental protein,	82.43
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	80.24

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.97  E-value=8.2e-30  Score=235.02  Aligned_cols=179  Identities=64%  Similarity=0.964  Sum_probs=163.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906           1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE   80 (191)
Q Consensus         1 ~~~~p~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~   80 (191)
                      |+|+|+++++++|.++|.+++|||+++|++||++|++++.+|+|..+|+.++...++.+..+|++|+++|||.|.++|..
T Consensus         3 ~~w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~   82 (852)
T 4fdd_A            3 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN   82 (852)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred             CCCCCChhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC
Confidence            78999999999999999999999999999999999999999999999999997446778999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc---
Q psy9906          81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL---  157 (191)
Q Consensus        81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l---  157 (191)
                      ++++.|..||+.++++|.++++.+|++++.+++.|++.++++.||++++.|.+.++++++..+++++.+|..+++++   
T Consensus        83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~  162 (852)
T 4fdd_A           83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI  162 (852)
T ss_dssp             CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987776521   


Q ss_pred             ---------------------CCCcHHHHHHHHHHHHHHhhhh
Q psy9906         158 ---------------------FHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       158 ---------------------~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                                           .+++..+|.+|+.+++.++.+.
T Consensus       163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~  205 (852)
T 4fdd_A          163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR  205 (852)
T ss_dssp             HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred             hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence                                 2457889999999998877543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.93  E-value=1.4e-25  Score=209.71  Aligned_cols=147  Identities=22%  Similarity=0.300  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc------CC
Q psy9906           8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY------EF   81 (191)
Q Consensus         8 ~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~------~i   81 (191)
                      ++++++.++|.++++||+++|  ||++|++++++|+|+.+|++++. +++.+.++|++|+++|||.|+++|.      .+
T Consensus         2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l   78 (960)
T 1wa5_C            2 SDLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNHLL   78 (960)
T ss_dssp             CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred             CcHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence            467899999999999999999  99999999999999999999996 4566889999999999999999998      79


Q ss_pred             ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906          82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL  157 (191)
Q Consensus        82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l  157 (191)
                      ++++|..||+.+++++.++++.+|++++.+|+.|+++|||++||++++.|++.++++++..+++++.+|..+++.+
T Consensus        79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~  154 (960)
T 1wa5_C           79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW  154 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887899999999999999999999999999999999999999899999999998898865

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.91  E-value=4.4e-24  Score=182.08  Aligned_cols=166  Identities=21%  Similarity=0.273  Sum_probs=147.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-----------h
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNT--HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-----------F   78 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~--~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-----------W   78 (191)
                      +|.++|.++++||+++|++||++|++++.  .|+|+.+|+.++. ..+.+..+|++|+++|||.++++           |
T Consensus         2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~-~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~   80 (462)
T 1ibr_B            2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   80 (462)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence            58899999999999999999999999987  5899999999997 34568899999999999999765           6


Q ss_pred             cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcC--CccccchhhhHHHHHhh
Q psy9906          79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQ--DYNVCELLPVLLPILKE  155 (191)
Q Consensus        79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~--~~~~~~~~l~~L~~l~e  155 (191)
                      ..++++.|..||+.+++.|.++++.+ ++++.+|+.|+++++| +.||+++|.|++.++++  ++..+++++.+|..+++
T Consensus        81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~  159 (462)
T 1ibr_B           81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  159 (462)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988888 9999999999999988 59999999999999988  88899999999988776


Q ss_pred             hc--------------------CCC--cHHHHHHHHHHHHHHhhhh
Q psy9906         156 TL--------------------FHH--DWEIKESGILALGAIAEVN  179 (191)
Q Consensus       156 ~l--------------------~~~--~~~~r~~~i~~~~ai~~~~  179 (191)
                      ++                    .+.  +..+|.+++.+++.+++..
T Consensus       160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            43                    223  5889999999999876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.89  E-value=5.4e-23  Score=187.84  Aligned_cols=167  Identities=25%  Similarity=0.285  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh---------
Q psy9906          10 LIQILQLLKES-QSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR---------   77 (191)
Q Consensus        10 ~~~l~~lL~~~-~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~---------   77 (191)
                      .+++.++|.++ ++||+++|++||++|++++++  |+|+.+|++++. +.+.+..+|++|+++|||.|+++         
T Consensus         3 ~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~-~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~   81 (861)
T 2bpt_A            3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLI-DENTKLEGRILAALTLKNELVSKDSVKTQQFA   81 (861)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred             HHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence            46899999999 999999999999999999875  899999999996 34468899999999999998654         


Q ss_pred             --hcC-CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcC-CccccchhhhHHHH
Q psy9906          78 --FYE-FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQ-DYNVCELLPVLLPI  152 (191)
Q Consensus        78 --W~~-i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~  152 (191)
                        |.. ++++.|..||+.+++.|.++++.+|++++.+++.|++.++| +.||++++.|.+.++++ +++.+++++.++..
T Consensus        82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~  161 (861)
T 2bpt_A           82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY  161 (861)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred             HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              675 99999999999999999999999999999999999999988 59999999999999988 88899999999988


Q ss_pred             HhhhcC----------------------CC--cHHHHHHHHHHHHHHhh
Q psy9906         153 LKETLF----------------------HH--DWEIKESGILALGAIAE  177 (191)
Q Consensus       153 l~e~l~----------------------~~--~~~~r~~~i~~~~ai~~  177 (191)
                      +++.+.                      +.  +..+|.+++.+++.+++
T Consensus       162 l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~  210 (861)
T 2bpt_A          162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI  210 (861)
T ss_dssp             HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred             HHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            876432                      22  67899999999998754

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.89  E-value=1.1e-22  Score=189.28  Aligned_cols=150  Identities=15%  Similarity=0.212  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH
Q psy9906           9 GLIQILQLLKE-SQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE   87 (191)
Q Consensus         9 ~~~~l~~lL~~-~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~   87 (191)
                      +++++.+++.. ..+||++.|++||++|++++++|+++.++..++.  ++.+..+|++|+++|||.|+++|..+++++|.
T Consensus        22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~   99 (963)
T 2x19_B           22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTDQYE   99 (963)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHH
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHH
Confidence            57889999988 5568999999999999999999999999999986  46789999999999999999999999999999


Q ss_pred             HHHHHHHHhhCC---CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhc-----CCccccchhhhHHHHHhhhcCC
Q psy9906          88 FIKQECLSAIGD---PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDS-----QDYNVCELLPVLLPILKETLFH  159 (191)
Q Consensus        88 ~ik~~ll~~l~~---~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~-----~~~~~~~~~l~~L~~l~e~l~~  159 (191)
                      .||+.|++.+.+   .++.||++++.+++.|+++|||+.||++++.|++.+++     +++..+++++.+|..++|++++
T Consensus       100 ~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~  179 (963)
T 2x19_B          100 SLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQT  179 (963)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhc
Confidence            999999999875   47999999999999999999999999999999999976     2556789999999999986643


Q ss_pred             C
Q psy9906         160 H  160 (191)
Q Consensus       160 ~  160 (191)
                      .
T Consensus       180 ~  180 (963)
T 2x19_B          180 S  180 (963)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.89  E-value=6.4e-23  Score=193.35  Aligned_cols=150  Identities=18%  Similarity=0.239  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906           7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS   86 (191)
Q Consensus         7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k   86 (191)
                      +.+++++.++|..+++||++.|++||++|++++++|+++.++..++..  +.+..+|++|+++|||.|+++|..+++++|
T Consensus        12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~   89 (1049)
T 3m1i_C           12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHR   89 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred             cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHHH
Confidence            456899999999999999999999999999999999999999999963  568899999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC---------CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906          87 EFIKQECLSAIGDP---------SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL  157 (191)
Q Consensus        87 ~~ik~~ll~~l~~~---------~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l  157 (191)
                      ..||+.+++.+.+.         ++.+|++++.+++.|+++|||+.||++++.|++.++ +++..+++++.+|..++|++
T Consensus        90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev  168 (1049)
T 3m1i_C           90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEV  168 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHH
Confidence            99999999998752         489999999999999999999999999999999997 56667899999999999876


Q ss_pred             CC
Q psy9906         158 FH  159 (191)
Q Consensus       158 ~~  159 (191)
                      ++
T Consensus       169 ~~  170 (1049)
T 3m1i_C          169 FD  170 (1049)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.88  E-value=3e-22  Score=191.39  Aligned_cols=152  Identities=14%  Similarity=0.175  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906           7 EEGLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG   84 (191)
Q Consensus         7 ~~~~~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~   84 (191)
                      ++..+++.+++..+++|  |++.|++||++|++++++|+++.++..++. +.+.+..+|++|+++|||.|+++|..++++
T Consensus         7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e   85 (1204)
T 3a6p_A            7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSRL   85 (1204)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence            45688899999999998  888999999999999999988888888875 456789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906          85 VSEFIKQECLSAIGD-------PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL  157 (191)
Q Consensus        85 ~k~~ik~~ll~~l~~-------~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l  157 (191)
                      +|..||+.+++.+.+       .++.||++++.+++.|+++|||++||++++.|++++++ ++..+++++.+|..++|++
T Consensus        86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev  164 (1204)
T 3a6p_A           86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV  164 (1204)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence            999999999998763       46999999999999999999999999999999999976 5677899999999999976


Q ss_pred             CCC
Q psy9906         158 FHH  160 (191)
Q Consensus       158 ~~~  160 (191)
                      ++.
T Consensus       165 ~~~  167 (1204)
T 3a6p_A          165 VTF  167 (1204)
T ss_dssp             HTS
T ss_pred             ccc
Confidence            543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.86  E-value=1.5e-22  Score=188.91  Aligned_cols=146  Identities=12%  Similarity=0.168  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      +++++.+++..+++||++.|++||+.|++++++|+++.++..++.  .+.+..+|++|+++|||.|+++|..+++++|..
T Consensus         5 d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~   82 (971)
T 2x1g_F            5 DIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPENREE   82 (971)
T ss_dssp             ------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHH
Confidence            477888899889999999999999999999999999999999996  457889999999999999999999999999999


Q ss_pred             HHHHHHHhhCC---CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC------CccccchhhhHHHHHhhhc
Q psy9906          89 IKQECLSAIGD---PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ------DYNVCELLPVLLPILKETL  157 (191)
Q Consensus        89 ik~~ll~~l~~---~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~------~~~~~~~~l~~L~~l~e~l  157 (191)
                      ||+.|++.+.+   .++.||++++.+++.|++++|| .||++++.|++.++++      ++..+++++.+|..++|++
T Consensus        83 ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi  159 (971)
T 2x1g_F           83 LKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA  159 (971)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHH
Confidence            99999999875   3799999999999999999999 9999999999999875      5667899999999888754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.84  E-value=1.3e-20  Score=172.32  Aligned_cols=166  Identities=22%  Similarity=0.281  Sum_probs=146.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhh-----------hhhh
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNV-----------RARF   78 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i-----------~~~W   78 (191)
                      +|.++|.++++||+++|++||++|+++..+  |+|..+|+.++. +.+.+..+|++|+++|||.+           ..+|
T Consensus         2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~-~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w   80 (876)
T 1qgr_A            2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   80 (876)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence            578999999999999999999999999876  889999999996 34457899999999999997           3679


Q ss_pred             cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcC--CccccchhhhHHHHHhh
Q psy9906          79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQ--DYNVCELLPVLLPILKE  155 (191)
Q Consensus        79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~--~~~~~~~~l~~L~~l~e  155 (191)
                      ..++++.|..||+.+++.|.++++.+ ++++.+++.|++.++| +.||++++.+.+.+.++  ++..+++++.+|..+++
T Consensus        81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~  159 (876)
T 1qgr_A           81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  159 (876)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887778 9999999999999977 99999999999999998  88889999999977765


Q ss_pred             hc--------------------CCC--cHHHHHHHHHHHHHHhhhh
Q psy9906         156 TL--------------------FHH--DWEIKESGILALGAIAEVN  179 (191)
Q Consensus       156 ~l--------------------~~~--~~~~r~~~i~~~~ai~~~~  179 (191)
                      .+                    .+.  ++.+|..++.+++.++++.
T Consensus       160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (876)
T 1qgr_A          160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            32                    233  5889999999999987653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.83  E-value=2.1e-20  Score=176.12  Aligned_cols=148  Identities=19%  Similarity=0.254  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      +++.|.+++...++|+++.|++|+++|++++++|+++..+..++.  ++.++.+|++|+++|||.|+++|..+++++|..
T Consensus        14 dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~   91 (1023)
T 4hat_C           14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIG   91 (1023)
T ss_dssp             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            578889999999999989999999999999999999999999995  356789999999999999999999999999999


Q ss_pred             HHHHHHHhhCC----C-----CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906          89 IKQECLSAIGD----P-----SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH  159 (191)
Q Consensus        89 ik~~ll~~l~~----~-----~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~  159 (191)
                      ||+.+++.+..    +     ++.++++++.+++.|++++||+.||++++.+++.+++ ++..++.++.+|..+.|++++
T Consensus        92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~  170 (1023)
T 4hat_C           92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFD  170 (1023)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence            99999998754    1     5788999999999999999999999999999999975 456789999999999998754

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.83  E-value=2.8e-20  Score=175.45  Aligned_cols=149  Identities=20%  Similarity=0.284  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      +++.|.+++...++||++.|++|++.|++++++|+++..+..++.  .+.++.+|++|+.+||+.|+++|..+++++|..
T Consensus        26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~--~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~  103 (1073)
T 3gjx_A           26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILE--FSQNMNTKYYGLQILENVIKTRWKILPRNQCEG  103 (1073)
T ss_dssp             SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence            588999999999999999999999999999999999999999985  456889999999999999999999999999999


Q ss_pred             HHHHHHHhhCC---------CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906          89 IKQECLSAIGD---------PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH  159 (191)
Q Consensus        89 ik~~ll~~l~~---------~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~  159 (191)
                      ||+.+++.+..         .++.++++++.+++.|++++||+.||++++++++.+++ ++..++.++.+|..+.|++++
T Consensus       104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d  182 (1073)
T 3gjx_A          104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFD  182 (1073)
T ss_dssp             HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            99999998753         25788899999999999999999999999999999875 456789999999999999876


Q ss_pred             C
Q psy9906         160 H  160 (191)
Q Consensus       160 ~  160 (191)
                      .
T Consensus       183 ~  183 (1073)
T 3gjx_A          183 F  183 (1073)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.76  E-value=5.7e-18  Score=159.09  Aligned_cols=148  Identities=14%  Similarity=0.195  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh--
Q psy9906           9 GLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG--   84 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~--   84 (191)
                      +.+++.++++.+++|  |++.|++|++.|+++++.|+++.++..++...+..+..+|++|+.+||+.|+    .++++  
T Consensus         4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~   79 (980)
T 3ibv_A            4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN   79 (980)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred             CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhh
Confidence            488999999988888  7999999999999999999999999999963222388999999999999999    68889  


Q ss_pred             --HHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCc-cccchhhhHHHHHhhh
Q psy9906          85 --VSEFIKQECLSAIGD-----PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDY-NVCELLPVLLPILKET  156 (191)
Q Consensus        85 --~k~~ik~~ll~~l~~-----~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~-~~~~~~l~~L~~l~e~  156 (191)
                        ++..||+.+++.+..     .++.||++++.+++.|++++||..||++++.+++.+++++. ......+++|+.+.|+
T Consensus        80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE  159 (980)
T 3ibv_A           80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDE  159 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHH
Confidence              999999999998763     46899999999999999999999999999999999987654 3445566666766698


Q ss_pred             cCCC
Q psy9906         157 LFHH  160 (191)
Q Consensus       157 l~~~  160 (191)
                      +++.
T Consensus       160 v~~~  163 (980)
T 3ibv_A          160 IADS  163 (980)
T ss_dssp             HCCC
T ss_pred             HHhc
Confidence            8764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.23  E-value=2.8e-10  Score=108.51  Aligned_cols=163  Identities=15%  Similarity=0.112  Sum_probs=130.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC------C----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHP------D----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE   80 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~------~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~   80 (191)
                      .++.++|.+..|||+++|++|+..|.+..+.+      .    ....++..+   .+.+..+|+.|+..|.+.+.    .
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L---~d~~~~vR~~A~~~L~~l~~----~   78 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL---EDKNGEVQNLAVKCLGPLVS----K   78 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHHHT----T
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHH----h
Confidence            56889999999999999999999998765433      1    233333433   45688999999999988765    3


Q ss_pred             CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC---------CCchHHHHHHHHhh-cCCccccchhhhHH
Q psy9906          81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK---------SWPELLPTLNDMLD-SQDYNVCELLPVLL  150 (191)
Q Consensus        81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~---------~Wpell~~L~~~l~-~~~~~~~~~~l~~L  150 (191)
                      ++++....|++.+++.+.+++..+|..++.+++.|+...++.         .|++++|.|++.+. ++++..+++++.+|
T Consensus        79 ~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l  158 (1230)
T 1u6g_C           79 VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM  158 (1230)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            566788899999999999988899999999999999988765         49999999999998 47788889999988


Q ss_pred             HHHhhh-------------------cCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         151 PILKET-------------------LFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       151 ~~l~e~-------------------l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      ..+++.                   +.+++..+|..++.+++.+++...
T Consensus       159 ~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~  207 (1230)
T 1u6g_C          159 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG  207 (1230)
T ss_dssp             HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence            766631                   234568899999999999987654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.71  E-value=2.9e-07  Score=80.17  Aligned_cols=99  Identities=12%  Similarity=0.181  Sum_probs=79.4

Q ss_pred             CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHhhcCCccccchhhhHHHHHhh----
Q psy9906          81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS-WPELLPTLNDMLDSQDYNVCELLPVLLPILKE----  155 (191)
Q Consensus        81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~-Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----  155 (191)
                      .++..+..+...+...+.++++.+|..++.+++.++..-.++. +++++|.+..+++++++..+..++.+|..+.+    
T Consensus       157 ~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  236 (588)
T 1b3u_A          157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ  236 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred             cCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence            3455666777777777788999999999999999998765433 47899999999998888888888888765543    


Q ss_pred             -------------hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         156 -------------TLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       156 -------------~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                                   -+.+.+|.+|.+++.++|.|.++.
T Consensus       237 ~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~  273 (588)
T 1b3u_A          237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence                         224678999999999999998864

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.53  E-value=3.3e-06  Score=64.58  Aligned_cols=146  Identities=20%  Similarity=0.190  Sum_probs=105.4

Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906           7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS   86 (191)
Q Consensus         7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k   86 (191)
                      ++.+..|++.|   .++|..+|..|-..|..+.. ++....|...+.   +.+..+|..|.-.|.+.-.       ++  
T Consensus        18 ~~~~~~L~~~L---~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~-------~~--   81 (211)
T 3ltm_A           18 PEKVEMYIKNL---QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGD-------ER--   81 (211)
T ss_dssp             GGGHHHHHHHT---TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCC-------GG--
T ss_pred             HhHHHHHHHHH---cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCC-------HH--
Confidence            44455555555   47899999999999998866 678888888874   4578899999888866421       11  


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hc
Q psy9906          87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TL  157 (191)
Q Consensus        87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l  157 (191)
                        .-..+++.|.++++.+|..+..+++.+..       ++.++.|..++.++++..+..+...|..+.+         -+
T Consensus        82 --~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l  152 (211)
T 3ltm_A           82 --AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKAL  152 (211)
T ss_dssp             --GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred             --HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              22456667777888888888888877742       5677888888887777777777777655543         35


Q ss_pred             CCCcHHHHHHHHHHHHHHhh
Q psy9906         158 FHHDWEIKESGILALGAIAE  177 (191)
Q Consensus       158 ~~~~~~~r~~~i~~~~ai~~  177 (191)
                      .++++.+|..++.+++.+.+
T Consensus       153 ~d~~~~vr~~a~~aL~~~~~  172 (211)
T 3ltm_A          153 KDEDGWVRQSAADALGEIGG  172 (211)
T ss_dssp             TCSSHHHHHHHHHHHHHHCS
T ss_pred             cCCCHHHHHHHHHHHHHhCc
Confidence            56778888888888887744

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.49  E-value=6.7e-06  Score=62.37  Aligned_cols=145  Identities=19%  Similarity=0.184  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      ....-.++....++|..+|..|-..|..+.. ++....|...+.   +.+..+|..|...|.+.-.       ++    .
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~-------~~----~   77 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGD-------ER----A   77 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-------GG----G
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHc---CCCHHHHHHHHHHHHhhCC-------HH----H
Confidence            3445566666678899999999999998865 677888888874   4578899999888765421       11    2


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCCC
Q psy9906          90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFHH  160 (191)
Q Consensus        90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~~  160 (191)
                      -..+++.|.++++.+|..+..+++.+..       |+.++.|...+.++++..+..+..+|..+.+         -+.+.
T Consensus        78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~  150 (201)
T 3ltj_A           78 VEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE  150 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            3466677788888899888888887742       5678888888888888777777777755543         35567


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy9906         161 DWEIKESGILALGAIA  176 (191)
Q Consensus       161 ~~~~r~~~i~~~~ai~  176 (191)
                      ++.+|..++.++|.+.
T Consensus       151 ~~~vr~~A~~aL~~~~  166 (201)
T 3ltj_A          151 DGWVRQSAADALGEIG  166 (201)
T ss_dssp             SHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            8889999988888874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.44  E-value=1e-06  Score=76.59  Aligned_cols=81  Identities=11%  Similarity=-0.045  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-----------------hcCCCc
Q psy9906          99 DPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE-----------------TLFHHD  161 (191)
Q Consensus        99 ~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-----------------~l~~~~  161 (191)
                      +++..+|...+.+++.++..-.+..+++++|.+.++++++++..+..+..+|..+.+                 -+.+.+
T Consensus       137 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~  216 (588)
T 1b3u_A          137 GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ  216 (588)
T ss_dssp             CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSC
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCc
Confidence            445666666677777766655445567777777777777777666676666655432                 123456


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q psy9906         162 WEIKESGILALGAIAEVN  179 (191)
Q Consensus       162 ~~~r~~~i~~~~ai~~~~  179 (191)
                      +.+|.+|+.+++.+++..
T Consensus       217 ~~vr~~a~~~l~~l~~~~  234 (588)
T 1b3u_A          217 DSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             HHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            778888888887777653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.23  E-value=2.5e-05  Score=59.09  Aligned_cols=143  Identities=16%  Similarity=0.109  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      .+..|.++|   .++|..+|..|-..|..+.. ++....|...+.   +.++.+|..|+-.|.+.-.       +    .
T Consensus        46 ~~~~L~~~l---~~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-------~----~  107 (201)
T 3ltj_A           46 AVEPLIKAL---KDEDAWVRRAAADALGQIGD-ERAVEPLIKALK---DEDGWVRQSAAVALGQIGD-------E----R  107 (201)
T ss_dssp             GHHHHHHHT---TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-------G----G
T ss_pred             HHHHHHHHH---cCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-------H----H
Confidence            344444444   47899999999999998865 778888888774   4688899999988876421       1    1


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCC
Q psy9906          89 IKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFH  159 (191)
Q Consensus        89 ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~  159 (191)
                      ....+++.+.++++.+|..++.+++.+..       ++.++.|..++.++++..+..+...|..+.+         -+.+
T Consensus       108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d  180 (201)
T 3ltj_A          108 AVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET  180 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC
Confidence            34467778888999999999999998852       6788999999998888888888887755543         3345


Q ss_pred             CcHHHHHHHHHHHHHHh
Q psy9906         160 HDWEIKESGILALGAIA  176 (191)
Q Consensus       160 ~~~~~r~~~i~~~~ai~  176 (191)
                      +++.+|.+++.+++.|-
T Consensus       181 ~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          181 GTGFARKVAVNYLETHK  197 (201)
T ss_dssp             CCHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            78999999998887754

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.20  E-value=2.6e-05  Score=59.51  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      .+..|.++|   .++|..+|..|-..|..+.. ++....|...+.   +.+..+|..|...|.+.-.       ++    
T Consensus        51 ~~~~L~~~l---~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~-------~~----  112 (211)
T 3ltm_A           51 AVEPLIKAL---KDEDAWVRRAAADALGQIGD-ERAVEPLIKALK---DEDGWVRQSAAVALGQIGD-------ER----  112 (211)
T ss_dssp             GHHHHHHHT---TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-------GG----
T ss_pred             HHHHHHHHH---cCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-------HH----
Confidence            344444444   46799999999999998875 778888888873   5678899999988876521       11    


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCC
Q psy9906          89 IKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFH  159 (191)
Q Consensus        89 ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~  159 (191)
                      ....|++.+.++++.+|..++.+++.+.       -++.++.|..++.++++..+..+...|..+.+         -+.+
T Consensus       113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d  185 (211)
T 3ltm_A          113 AVEPLIKALKDEDWFVRIAAAFALGEIG-------DERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET  185 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC
Confidence            3356777888899999999999999884       26789999999988888888888877755543         3445


Q ss_pred             CcHHHHHHHHHHHHHHhhhhh
Q psy9906         160 HDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       160 ~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      .+..+|.+++.+++.+-....
T Consensus       186 ~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          186 GTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             CCHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHhcCCCCC
Confidence            789999999999988766544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.19  E-value=4.2e-05  Score=60.86  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=33.4

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHH
Q psy9906          16 LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKN   72 (191)
Q Consensus        16 lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn   72 (191)
                      ++....++|..+|..|-..|..+.. ++....|...+.   +.+..+|..|+..|-+
T Consensus        28 L~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~   80 (280)
T 1oyz_A           28 LFRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQ   80 (280)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence            3334445677777777777776653 556666666653   3466777777766644

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.18  E-value=0.00014  Score=57.83  Aligned_cols=147  Identities=16%  Similarity=0.165  Sum_probs=99.2

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhh--hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH
Q psy9906          18 KESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTK--LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLS   95 (191)
Q Consensus        18 ~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~--~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~   95 (191)
                      ....++|..+|..|-..|.++...+.....++.++..  .++.+..+|..|+-.|.+.-...     +.....+-..++.
T Consensus        61 ~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-----~~~~~~~~~~L~~  135 (280)
T 1oyz_A           61 EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN-----PIYSPKIVEQSQI  135 (280)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----CcccHHHHHHHHH
Confidence            3345789999999999999887544444444443311  24568889999998887754321     1112234456777


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh-----------hhcCCCcHHH
Q psy9906          96 AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK-----------ETLFHHDWEI  164 (191)
Q Consensus        96 ~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~-----------e~l~~~~~~~  164 (191)
                      .+.++++.+|..++.+++.+..       |+.++.|...+.++++..+..+...|..+.           +.+.+.++.+
T Consensus       136 ~l~d~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~v  208 (280)
T 1oyz_A          136 TAFDKSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEV  208 (280)
T ss_dssp             HTTCSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHH
T ss_pred             HhhCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHH
Confidence            7888888888888888876653       457788888888877777777777665553           2455677888


Q ss_pred             HHHHHHHHHHHh
Q psy9906         165 KESGILALGAIA  176 (191)
Q Consensus       165 r~~~i~~~~ai~  176 (191)
                      |..++.++|.+.
T Consensus       209 R~~A~~aL~~~~  220 (280)
T 1oyz_A          209 RIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            888888888775

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.17  E-value=0.00013  Score=57.03  Aligned_cols=158  Identities=15%  Similarity=0.156  Sum_probs=112.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcC------CCh---HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906          16 LLKESQSPDNLIQRAVQHKLEQLNTH------PDF---NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS   86 (191)
Q Consensus        16 lL~~~~s~d~~~r~~AE~~L~~~~~~------~~~---~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k   86 (191)
                      +++...+.|-..|+.|-..|..+-..      +++   ...|...+.  +..+..+|..|+..+......-=..+ ...-
T Consensus        20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~   96 (242)
T 2qk2_A           20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKGLAKRF-SNYA   96 (242)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHGGGG-HHHH
T ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence            44555688999999999999876542      233   334444442  25688899999999988886421112 2233


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHH-------------
Q psy9906          87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPIL-------------  153 (191)
Q Consensus        87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l-------------  153 (191)
                      ..+=..+++.+.++...+|..++.++..++....   -+.++|.+...+++.++..+..++..+..+             
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~  173 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL  173 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence            4455588888889999999999999999998653   357899999999888876666665555443             


Q ss_pred             --------hhhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         154 --------KETLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       154 --------~e~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                              .+.+.+.++.+|.+|+.++|.++.-.
T Consensus       174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence                    23345678999999999999977443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.08  E-value=0.00029  Score=59.19  Aligned_cols=170  Identities=17%  Similarity=0.213  Sum_probs=110.6

Q ss_pred             HHHHHHHHHhcC-C--CHHHHHHHHHHHHHhhc----C-CC--hHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          11 IQILQLLKESQS-P--DNLIQRAVQHKLEQLNT----H-PD--FNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        11 ~~l~~lL~~~~s-~--d~~~r~~AE~~L~~~~~----~-~~--~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      ..++..+...+. +  +..+|..|-..+..+-.    . ..  +..+++..+.. ..+.+..+|..+.-.|...+..+-.
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~  250 (462)
T 1ibr_B          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (462)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            445555554443 3  58899999888876321    1 11  23444444432 2345788999999899888876544


Q ss_pred             CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-----------C------CC-------CchHHHHHHHHh
Q psy9906          80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-----------L------KS-------WPELLPTLNDML  135 (191)
Q Consensus        80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-----------~------~~-------Wpell~~L~~~l  135 (191)
                      .+.+.....+-+.++..+.+.+..+|..+...+..++....           .      ..       .+.++|.+++.+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l  330 (462)
T 1ibr_B          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (462)
T ss_dssp             GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence            33332221344466677778889999999999999887630           1      11       167888888887


Q ss_pred             hcC-------CccccchhhhHHHHHh----------------hhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         136 DSQ-------DYNVCELLPVLLPILK----------------ETLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       136 ~~~-------~~~~~~~~l~~L~~l~----------------e~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      ...       ++..+.++..+|..+.                +.+.+.+|.+|++++.++|+|++|..
T Consensus       331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~  398 (462)
T 1ibr_B          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE  398 (462)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence            643       2344555655554443                34567899999999999999999876

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.06  E-value=0.00022  Score=54.00  Aligned_cols=156  Identities=21%  Similarity=0.179  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      ...|..+|   .++|.++|..|-..|..+....          |....|..++.   +.+..+|..|+..|.|....   
T Consensus        14 ~~~l~~LL---~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~---   84 (210)
T 4db6_A           14 LPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASG---   84 (210)
T ss_dssp             HHHHHHHT---TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTS---
T ss_pred             hHHHHHHh---cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC---
Confidence            33444444   3568999999999999887432          45566777764   45789999999999987642   


Q ss_pred             CCChhHHHHHH-----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906          80 EFPPGVSEFIK-----QECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus        80 ~i~~~~k~~ik-----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                        +++.+..+.     ..++..|.++++.+|..++.++..++.......    -.++++.|++++.+++...++.++.+|
T Consensus        85 --~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL  162 (210)
T 4db6_A           85 --GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (210)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             --CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence              233333333     467777888899999999999999997542111    246899999999988888888888777


Q ss_pred             HHHhh--------------------hcCCCcHHHHHHHHHHHHHHh
Q psy9906         151 PILKE--------------------TLFHHDWEIKESGILALGAIA  176 (191)
Q Consensus       151 ~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~  176 (191)
                      ..++.                    -+.+.+..+|+.|..+++.+.
T Consensus       163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            66553                    123456677777777766654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.98  E-value=0.0003  Score=59.06  Aligned_cols=152  Identities=15%  Similarity=0.129  Sum_probs=112.9

Q ss_pred             cCC-CHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          21 QSP-DNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        21 ~s~-d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      .++ |..+|..|-..|..+...          .+....|..++.   +.++.+|..|+-.|.|.....     ++.+..+
T Consensus        74 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~vr~~a~~~L~~l~~~~-----~~~~~~~  145 (450)
T 2jdq_A           74 KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS---SEFEDVQEQAVWALGNIAGDS-----TMCRDYV  145 (450)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHccCC-----HHHHHHH
Confidence            345 789999999988887642          567788888874   458899999999998877532     2333322


Q ss_pred             -----HHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC-CCCC---CchHHHHHHHHhhcCCccccchhhhHHHHHhh----
Q psy9906          90 -----KQECLSAIGD-PSPLIRATVGILITTIASKG-DLKS---WPELLPTLNDMLDSQDYNVCELLPVLLPILKE----  155 (191)
Q Consensus        90 -----k~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e-~~~~---Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----  155 (191)
                           -..++..+.+ .+..+|..++.+++.++... +...   -.+++|.|+.++.++++..+..+..+|..+++    
T Consensus       146 ~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~  225 (450)
T 2jdq_A          146 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND  225 (450)
T ss_dssp             HHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred             HHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH
Confidence                 3456666775 68999999999999999765 2221   36899999999998887776666666655543    


Q ss_pred             ----------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 ----------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 ----------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                                      -+.+.++.+|..++.+++.+..+.+
T Consensus       226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  266 (450)
T 2jdq_A          226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD  266 (450)
T ss_dssp             HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh
Confidence                            2456789999999999999987743

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.97  E-value=0.00015  Score=66.64  Aligned_cols=157  Identities=27%  Similarity=0.355  Sum_probs=106.5

Q ss_pred             cCCCHHHHHHHHHHHHHhhcC-C--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTH-P--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ   91 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~-~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~   91 (191)
                      .+++..+|..|-..|..+-.. +        ++...+...+   ++.+..+|..|.-.|-+.+..+-..+.+... .+-.
T Consensus       184 ~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~---~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~  259 (852)
T 4fdd_A          184 KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVE  259 (852)
T ss_dssp             TCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHH
Confidence            467899999999999866532 1        2333344433   4568899999999888887754332323322 3555


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHhhC-----CCCCCchHHHHHHHHh-----------hc-----------CCccccc
Q psy9906          92 ECLSAIGDPSPLIRATVGILITTIASKG-----DLKSWPELLPTLNDML-----------DS-----------QDYNVCE  144 (191)
Q Consensus        92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-----~~~~Wpell~~L~~~l-----------~~-----------~~~~~~~  144 (191)
                      .++..+.+.+..+|..+..++..++...     .+..-+.++|.++..+           ++           .++..+.
T Consensus       260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~  339 (852)
T 4fdd_A          260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK  339 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence            7777788889999999999999998643     1223457888888877           22           1222344


Q ss_pred             hhhhHH----------------HHHhhhcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906         145 LLPVLL----------------PILKETLFHHDWEIKESGILALGAIAEVNKS  181 (191)
Q Consensus       145 ~~l~~L----------------~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~  181 (191)
                      .+..+|                +++.+.+.+.+|.+|++|+.++|+|++|...
T Consensus       340 ~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~  392 (852)
T 4fdd_A          340 CSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ  392 (852)
T ss_dssp             HHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence            444444                4444455678999999999999999998754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.93  E-value=0.00019  Score=55.42  Aligned_cols=156  Identities=20%  Similarity=0.150  Sum_probs=112.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906          15 QLLKESQSPDNLIQRAVQHKLEQLNTHP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG   84 (191)
Q Consensus        15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~   84 (191)
                      .++.-..++|.++|..|-..|..+....          |....|..++.   +.+..+|..|+-.|.|.....     ++
T Consensus         6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~-----~~   77 (252)
T 4hxt_A            6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGP-----DE   77 (252)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSC-----HH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCC-----hH
Confidence            3444445678899999999998886532          56777777774   456899999999998886531     33


Q ss_pred             HHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          85 VSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        85 ~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      .+..     .=..++..|.+++..++..++.++..++......    .=.+.++.|++++.++++..+..++.+|..++.
T Consensus        78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            3332     2335666777889999999999999999644110    013688999999998888777777777655542


Q ss_pred             --------------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         156 --------------------TLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       156 --------------------~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                                          -+.+.+..+|..++.+++.+..+
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  200 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG  200 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence                                24456789999999999998864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.91  E-value=0.0001  Score=70.33  Aligned_cols=131  Identities=12%  Similarity=0.094  Sum_probs=103.7

Q ss_pred             HHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchH
Q psy9906          48 LIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPEL  127 (191)
Q Consensus        48 L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpel  127 (191)
                      +..++....+.+..+|..|.--|.+.+......+++.....+-..+++.|.+++..+|+.++.+++.++..-.+..++.+
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i   87 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI   87 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            44455545678999999999999998876655666666677888899999999999999999999999987766778899


Q ss_pred             HHHHHHHhhcCCccccchhhhHHHHHhh-------------------------hcC-CCcHHHHHHHHHHHHHHhhh
Q psy9906         128 LPTLNDMLDSQDYNVCELLPVLLPILKE-------------------------TLF-HHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       128 l~~L~~~l~~~~~~~~~~~l~~L~~l~e-------------------------~l~-~~~~~~r~~~i~~~~ai~~~  178 (191)
                      ++.|...+.+++...++++..+|..+.+                         .+. +.++.+|..++.+++.+.+.
T Consensus        88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            9999999988777667777666644432                         233 36789999999999988753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.87  E-value=0.00075  Score=56.56  Aligned_cols=158  Identities=12%  Similarity=-0.012  Sum_probs=111.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK   90 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik   90 (191)
                      .++|..+|..|-..|..+...          .+....|..++.  .+.+..+|..|.-.|.|.....-..........+=
T Consensus       117 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  194 (450)
T 2jdq_A          117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL  194 (450)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT--SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGH
T ss_pred             cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            457899999999999887753          356677777774  34578999999999998875431111111112334


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHh------------
Q psy9906          91 QECLSAIGDPSPLIRATVGILITTIASKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILK------------  154 (191)
Q Consensus        91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~------------  154 (191)
                      ..+++.+.+.+..++..++.+++.++....+.    .-.++++.|+.++.++++..++.++.+|..+.            
T Consensus       195 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  274 (450)
T 2jdq_A          195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN  274 (450)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence            46777788889999999999999998754110    01357888999998888777666666665443            


Q ss_pred             --------hhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         155 --------ETLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       155 --------e~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                              +-+.++++.+|..++.+++.|+.|..
T Consensus       275 ~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~  308 (450)
T 2jdq_A          275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNR  308 (450)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence                    23456789999999999999987643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.86  E-value=0.00017  Score=63.88  Aligned_cols=73  Identities=15%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP--ELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp--ell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      .++.-+.+-..+.+++.++++.||+.++.++..|++.. |+.++  ++++.+..++.++|+..+.+|..+|..+++
T Consensus       115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~  189 (591)
T 2vgl_B          115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE  189 (591)
T ss_dssp             SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence            34555566667888888889999999999999999855 67777  588999999988887777777777766654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.85  E-value=0.00043  Score=61.36  Aligned_cols=159  Identities=19%  Similarity=0.196  Sum_probs=112.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ   91 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~   91 (191)
                      +.++-...-++|...|+.|-..+--+... .+....+..++...++.+..+|+++.+++++....     .++....+-+
T Consensus        15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l~~n   89 (591)
T 2vgl_B           15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-----QPDMAIMAVN   89 (591)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-----SHHHHHTTHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-----CchHHHHHHH
Confidence            33444444577888888888887754431 22222333443334567899999999999988764     2444445566


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh----------------
Q psy9906          92 ECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE----------------  155 (191)
Q Consensus        92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----------------  155 (191)
                      .+.+.|.++++.+|..+..++   +....++-++.+++.+..++.++++..+..|..++..+.+                
T Consensus        90 ~l~kdL~~~n~~ir~~AL~~L---~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~  166 (591)
T 2vgl_B           90 SFVKDCEDPNPLIRALAVRTM---GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR  166 (591)
T ss_dssp             HHGGGSSSSSHHHHHHHHHHH---HTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence            777788889999996655444   4444667889999999999999998888888887754432                


Q ss_pred             -hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         156 -TLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       156 -~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                       -+.+.+..++.+|+.+++.|....
T Consensus       167 ~lL~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          167 DLIADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHhCCCChhHHHHHHHHHHHHHhhC
Confidence             345678899999999999987653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.85  E-value=0.00043  Score=56.50  Aligned_cols=170  Identities=13%  Similarity=0.058  Sum_probs=114.0

Q ss_pred             CCCCCChHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHhhcC---------CChHHHHHH-HHhhhCCC
Q psy9906           1 MAWQPQEEGLIQILQLLKESQSPD------------NLIQRAVQHKLEQLNTH---------PDFNNYLIF-VLTKLTSE   58 (191)
Q Consensus         1 ~~~~p~~~~~~~l~~lL~~~~s~d------------~~~r~~AE~~L~~~~~~---------~~~~~~L~~-il~~~~~~   58 (191)
                      |..+|  .+...+-+++.-..+|+            .+.|..|-..|.++-.+         -|-+..|+. ++   .+.
T Consensus        20 ~~~~~--d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL---~s~   94 (296)
T 1xqr_A           20 MRGQR--GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL---EAG   94 (296)
T ss_dssp             CCSCH--HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT---TCS
T ss_pred             HcCCC--CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH---cCC
Confidence            44443  33555555555555552            24666677777766543         234455555 55   356


Q ss_pred             ChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-H----HHHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCC--C--chHH
Q psy9906          59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFI-K----QECLSAIGD-PSPLIRATVGILITTIASKGDLKS--W--PELL  128 (191)
Q Consensus        59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-k----~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~--W--pell  128 (191)
                      ++.+|..|+-.|-|....     ++..+..+ +    ..|+..|.+ ++..+|..++.+++.|++...+..  .  .+.+
T Consensus        95 ~~~vr~~Aa~~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi  169 (296)
T 1xqr_A           95 AAGLRWRAAQLIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF  169 (296)
T ss_dssp             SHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence            889999999999988753     23333322 2    355566664 578999999999999998653321  1  3588


Q ss_pred             HHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         129 PTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       129 ~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      |.|..++.+++...+.-+..+|..++.                    -+.+++..+|+.++.+++.|+.+..
T Consensus       170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence            999999998887777667666665542                    2345678899999999999999843

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.79  E-value=0.0011  Score=50.87  Aligned_cols=154  Identities=18%  Similarity=0.116  Sum_probs=111.9

Q ss_pred             hcCCCHHHHHHHHHHHHHhhcC-C---------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH-
Q psy9906          20 SQSPDNLIQRAVQHKLEQLNTH-P---------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF-   88 (191)
Q Consensus        20 ~~s~d~~~r~~AE~~L~~~~~~-~---------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~-   88 (191)
                      ..++|..+|..|-..|..+... +         +....|..++.   +.+..+|..|+-.|.|....     +++.+.. 
T Consensus        53 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~  124 (252)
T 4hxt_A           53 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASG-----PDEAIKAI  124 (252)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTS-----CHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcC-----CHHHHHHH
Confidence            3456889999999999988763 2         55666777764   46789999999999998752     2333332 


Q ss_pred             ----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHHHHHhh-----
Q psy9906          89 ----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLLPILKE-----  155 (191)
Q Consensus        89 ----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-----  155 (191)
                          .=..+++.+.++++.++..++.++..++.......    =.+.++.|++++.++++..+..++.+|..++.     
T Consensus       125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  204 (252)
T 4hxt_A          125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA  204 (252)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence                23356677778889999999999999987541110    14589999999998888777777777755542     


Q ss_pred             ---------------hcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906         156 ---------------TLFHHDWEIKESGILALGAIAEVNKS  181 (191)
Q Consensus       156 ---------------~l~~~~~~~r~~~i~~~~ai~~~~~~  181 (191)
                                     -+.+.+..+|+.|+.+++.+..+...
T Consensus       205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence                           23456788999999999888876543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.006  Score=48.26  Aligned_cols=156  Identities=9%  Similarity=0.055  Sum_probs=109.4

Q ss_pred             HhcCCCHHHHHHHHHHHHH-hh-cC-------CChHHH---HHHHHhhhCCCChhHHhHHHHHHHHhhhhhh-cCCChhH
Q psy9906          19 ESQSPDNLIQRAVQHKLEQ-LN-TH-------PDFNNY---LIFVLTKLTSEDEPTRSLSGLILKNNVRARF-YEFPPGV   85 (191)
Q Consensus        19 ~~~s~d~~~r~~AE~~L~~-~~-~~-------~~~~~~---L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W-~~i~~~~   85 (191)
                      ...|++-..|++|-..|.. +. ..       .+|...   |...+.  ...+..+|..|+..+......-= ..+...-
T Consensus        24 ~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l~~~~f~~~y  101 (249)
T 2qk1_A           24 RITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLKTPGFSKDY  101 (249)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred             HhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence            3458899999999999998 64 31       233333   333332  35577899999988888774321 2333123


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CC---CchHHHHHHHHhhcCCccccchhhhHHHHHh-------
Q psy9906          86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KS---WPELLPTLNDMLDSQDYNVCELLPVLLPILK-------  154 (191)
Q Consensus        86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~---Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~-------  154 (191)
                      ...+=..+++.+.+..+.++..+..++..|+..-.| ..   =+++++.|+..+++.++..++.++.++..+.       
T Consensus       102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~  181 (249)
T 2qk1_A          102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY  181 (249)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence            334555788888888899999999999999987633 22   2379999999999888877777666553222       


Q ss_pred             ----------------hhcCCCcHHHHHHHHHHHHHHh
Q psy9906         155 ----------------ETLFHHDWEIKESGILALGAIA  176 (191)
Q Consensus       155 ----------------e~l~~~~~~~r~~~i~~~~ai~  176 (191)
                                      +-+.+.+..+|.+|+.++++|.
T Consensus       182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                            2344567889999999999975

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.74  E-value=0.00066  Score=58.74  Aligned_cols=161  Identities=13%  Similarity=0.086  Sum_probs=112.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhc-CC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNT-HP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEF   81 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i   81 (191)
                      +-.++....++|...|..|-..|..+.. .+          |....|..++.  ...++.+|..|+-.|.|....     
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~~v~~~A~~~L~~l~~~-----  148 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT--REDFPQLQFEAAWALTNIASG-----  148 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTS-----
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHhCC-----
Confidence            5556666678899999999999987743 22          56777888875  233488999999999887752     


Q ss_pred             ChhHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHh-hcCCccccchhhhHHH
Q psy9906          82 PPGVSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDML-DSQDYNVCELLPVLLP  151 (191)
Q Consensus        82 ~~~~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l-~~~~~~~~~~~l~~L~  151 (191)
                      +++.+..     .=..++..|.+++..+|..++.++..|+.......    -.+.++.|+.++ .++++..+..+..+|.
T Consensus       149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~  228 (528)
T 4b8j_A          149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS  228 (528)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            1233332     22356667778899999999999999986542100    124678888888 4556666666666665


Q ss_pred             HHhh-------------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         152 ILKE-------------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       152 ~l~e-------------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      .++.                   -+.+.++.++..++.+++.+.++..
T Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (528)
T 4b8j_A          229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN  276 (528)
T ss_dssp             HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            5543                   3456789999999999999887654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.71  E-value=0.0047  Score=53.29  Aligned_cols=151  Identities=15%  Similarity=0.165  Sum_probs=112.4

Q ss_pred             CCC-HHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906          22 SPD-NLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK   90 (191)
Q Consensus        22 s~d-~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik   90 (191)
                      ++| ..+|..|-..|.++...          .|....|+.++.   +.+..+|..|+-.|.|....     ++..+..+.
T Consensus       128 ~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~aL~~l~~~-----~~~~~~~i~  199 (528)
T 4b8j_A          128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG---SSSDDVREQAVWALGNVAGD-----SPKCRDLVL  199 (528)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHT-----CHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCC-----ChhhHHHHH
Confidence            445 88999998888887763          256677777774   46789999999999988642     234444443


Q ss_pred             -----HHHHHhh-CCCCHHHHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh------
Q psy9906          91 -----QECLSAI-GDPSPLIRATVGILITTIASKGDLKSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE------  155 (191)
Q Consensus        91 -----~~ll~~l-~~~~~~ir~~~~~~i~~Ia~~e~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e------  155 (191)
                           ..|+..| .+++..++..++.++..++...+...+   .+++|.|+.++.++++..+..++.+|..+++      
T Consensus       200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  279 (528)
T 4b8j_A          200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI  279 (528)
T ss_dssp             HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence                 2566667 357899999999999999988633332   5689999999998888777777777766553      


Q ss_pred             --------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 --------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 --------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                                    -+.++++.++..++.++|.|+.|.+
T Consensus       280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~  318 (528)
T 4b8j_A          280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD  318 (528)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH
Confidence                          2456788999999999999987654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.69  E-value=0.0008  Score=58.35  Aligned_cols=151  Identities=16%  Similarity=0.209  Sum_probs=112.1

Q ss_pred             CC-CHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-
Q psy9906          22 SP-DNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-   89 (191)
Q Consensus        22 s~-d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-   89 (191)
                      ++ +..+|..|-..|..+...          ++....|..++.   +.+..+|..|+-.|.|....     +++.+..+ 
T Consensus       141 ~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~-----~~~~~~~~~  212 (530)
T 1wa5_B          141 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGD-----STDYRDYVL  212 (530)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCC-----CccchHHHH
Confidence            44 788999998888877652          466778888875   35788999999999888753     12333332 


Q ss_pred             ----HHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-CCCCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh------
Q psy9906          90 ----KQECLSAIGDPSPLIRATVGILITTIASKG-DLKSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE------  155 (191)
Q Consensus        90 ----k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e------  155 (191)
                          =..|+..+.+++..++..++.+++.++... +...+   .+++|.|+.++.++++..+..++.+|..+..      
T Consensus       213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  292 (530)
T 1wa5_B          213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI  292 (530)
T ss_dssp             HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence                235666677788999999999999999876 33233   3689999999998887777777777766553      


Q ss_pred             --------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 --------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 --------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                                    -+.+.++.+|..++.+++.|+.|.+
T Consensus       293 ~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          293 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence                          2345789999999999999987643

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.69  E-value=0.00024  Score=55.22  Aligned_cols=159  Identities=21%  Similarity=0.152  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhh
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF   78 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W   78 (191)
                      +...+...|   .++|.++|..|-..|..+-.          ..|....|..++.   +.+..+|..|+-.|.|..... 
T Consensus        13 ~~~~~~~~L---~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~-   85 (252)
T 4db8_A           13 ELPQMTQQL---NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGG-   85 (252)
T ss_dssp             SHHHHHHHH---HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSC-
T ss_pred             hHHHHHHHH---cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCC-
Confidence            355555555   46677888888888843211          2467777888874   346889999999999887522 


Q ss_pred             cCCChhHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-C---CchHHHHHHHHhhcCCccccchhhhH
Q psy9906          79 YEFPPGVSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLK-S---WPELLPTLNDMLDSQDYNVCELLPVL  149 (191)
Q Consensus        79 ~~i~~~~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-~---Wpell~~L~~~l~~~~~~~~~~~l~~  149 (191)
                          ++.+..     .-..+++.|.++++.+|..++.++..++..+... .   =.+.+|.|++++.++++..++.++.+
T Consensus        86 ----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  161 (252)
T 4db8_A           86 ----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA  161 (252)
T ss_dssp             ----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence                233332     2346667777889999999999999998765221 1   13588999999998888777777777


Q ss_pred             HHHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         150 LPILKE--------------------TLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       150 L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                      |..++.                    -+.+++..+|..++.+++.++.+
T Consensus       162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  210 (252)
T 4db8_A          162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  210 (252)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence            755543                    23456888999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.66  E-value=0.0027  Score=54.96  Aligned_cols=164  Identities=12%  Similarity=-0.023  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      +..|+++|.   +++..+|.+|-..|.++...          .+....|+.++.   +.+..+|..|+-.|.+.....=.
T Consensus       175 i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          175 VPLFIQLLY---TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN---SNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHHHHHHH---HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG---SCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhCCCCC
Confidence            344555555   46889999999999888653          256666777764   36788999999999888764311


Q ss_pred             CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHhhcCCccccchhhhHHHHHh-
Q psy9906          80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL----KSWPELLPTLNDMLDSQDYNVCELLPVLLPILK-  154 (191)
Q Consensus        80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~----~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~-  154 (191)
                      .........+-..|+..|.+++..++..++.+++.++.....    -...++++.|+.++.++++..+..++.+|..++ 
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence            222222334445777778888999999999999999965311    011367899999999888777777777765554 


Q ss_pred             -------------------hhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         155 -------------------ETLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       155 -------------------e~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                                         +-+.++++.+|..|+.+++.|..|.
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~  372 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  372 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence                               2345678999999999999998754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.65  E-value=0.0023  Score=58.14  Aligned_cols=170  Identities=18%  Similarity=0.220  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhc-CC--CHHHHHHHHHHHHHhhcC-C---C---hHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          11 IQILQLLKESQ-SP--DNLIQRAVQHKLEQLNTH-P---D---FNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        11 ~~l~~lL~~~~-s~--d~~~r~~AE~~L~~~~~~-~---~---~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      ..++..+...+ ++  +..+|..|-..|..+... +   +   +..+++..+.. ..+.+..+|..|.-.|...+..+..
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            44444444443 33  578999998888764421 0   0   11223333221 2345778999999999998887766


Q ss_pred             CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC---------------CC--CCC-------chHHHHHHHHh
Q psy9906          80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG---------------DL--KSW-------PELLPTLNDML  135 (191)
Q Consensus        80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e---------------~~--~~W-------pell~~L~~~l  135 (191)
                      .+.+.....+-..++..+.+.+..+|..+..++..+++..               .|  ..+       ++++|.+++.+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            5544433244456666677788999999999998888752               11  111       45777788777


Q ss_pred             hc-------CCccccchhhhHHHHH----------------hhhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         136 DS-------QDYNVCELLPVLLPIL----------------KETLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       136 ~~-------~~~~~~~~~l~~L~~l----------------~e~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      ..       .++..+.++..+|..+                .+.+.+.+|.+|++++.++|.|++|..
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~  398 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE  398 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC
Confidence            53       2345555555555433                334567899999999999999999875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.65  E-value=0.001  Score=51.84  Aligned_cols=140  Identities=14%  Similarity=0.168  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhc--CCChHHHHHHH----HhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906          10 LIQILQLLKESQ--SPDNLIQRAVQHKLEQLNT--HPDFNNYLIFV----LTKLTSEDEPTRSLSGLILKNNVRARFYEF   81 (191)
Q Consensus        10 ~~~l~~lL~~~~--s~d~~~r~~AE~~L~~~~~--~~~~~~~L~~i----l~~~~~~~~~vRq~A~i~LKn~i~~~W~~i   81 (191)
                      +.++...|...+  +++..+|..|-..|..+..  .++|..+.-.+    +....+....+|..|...|+..+...    
T Consensus        54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----  129 (242)
T 2qk2_A           54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST----  129 (242)
T ss_dssp             CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----
Confidence            456666666655  6799999999999998775  24454443333    32234567899999999999987742    


Q ss_pred             ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-----LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-----~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      +  . ..+=..++..+.+.++.+|..+...+..++..-.     ...+|.++|.|...+.++++..+..+..++..+...
T Consensus       130 ~--~-~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          130 S--L-EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             C--H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             C--H-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2  1 2355678888888899999999999999765532     245789999999999999999999999999777653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.60  E-value=0.00049  Score=53.41  Aligned_cols=151  Identities=17%  Similarity=0.149  Sum_probs=104.3

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH-H
Q psy9906          18 KESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV-S   86 (191)
Q Consensus        18 ~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~-k   86 (191)
                      .-..+++.++|..|-..|..+...          .|....|..++.   +.+..+|..|+-.|.|.....     +.. .
T Consensus        61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~-----~~~~~  132 (252)
T 4db8_A           61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGG-----NEQIQ  132 (252)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSC-----HHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHhhcCC-----chHHH
Confidence            333466889999999999888752          346667777764   457899999999999885421     221 1


Q ss_pred             HH----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC---C-chHHHHHHHHhhcCCccccchhhhHHHHHhh---
Q psy9906          87 EF----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS---W-PELLPTLNDMLDSQDYNVCELLPVLLPILKE---  155 (191)
Q Consensus        87 ~~----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~---W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~e---  155 (191)
                      ..    +=..|++.|.+++..++..++.++..++.......   . .++++.|++++.++++..++.++.+|..++.   
T Consensus       133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  212 (252)
T 4db8_A          133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  212 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence            22    22366667778899999999999999997541110   0 4678999999999888888888888866642   


Q ss_pred             -----------------hcCCCcHHHHHHHHHHHHHHh
Q psy9906         156 -----------------TLFHHDWEIKESGILALGAIA  176 (191)
Q Consensus       156 -----------------~l~~~~~~~r~~~i~~~~ai~  176 (191)
                                       -+.+.+..+|..|..+++.+.
T Consensus       213 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          213 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence                             123445666666666665543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.44  E-value=0.00042  Score=52.35  Aligned_cols=129  Identities=17%  Similarity=0.102  Sum_probs=94.7

Q ss_pred             CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9906          42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-----KQECLSAIGDPSPLIRATVGILITTIA  116 (191)
Q Consensus        42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-----k~~ll~~l~~~~~~ir~~~~~~i~~Ia  116 (191)
                      +++...|..++.   +.+..+|..|+-.|.+....     +++.+..+     -..+++.|.++++.+|..++.++..++
T Consensus        11 ~~~~~~l~~LL~---s~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   82 (210)
T 4db6_A           11 GSELPQMVQQLN---SPDQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA   82 (210)
T ss_dssp             --CHHHHHHHTT---CSCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHhc---CCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456778888874   56889999999999988642     23333322     346777788889999999999999998


Q ss_pred             hhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHHHH
Q psy9906         117 SKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGILAL  172 (191)
Q Consensus       117 ~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~~~  172 (191)
                      ..+...    ...+.+|.|+.++.++++..++.+..+|..++.                    -+.+.+..+|..++.++
T Consensus        83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL  162 (210)
T 4db6_A           83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (210)
T ss_dssp             TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence            654211    124688999999999988777777777765542                    23456889999999999


Q ss_pred             HHHhhh
Q psy9906         173 GAIAEV  178 (191)
Q Consensus       173 ~ai~~~  178 (191)
                      +.+..+
T Consensus       163 ~~l~~~  168 (210)
T 4db6_A          163 SNIASG  168 (210)
T ss_dssp             HHHHTS
T ss_pred             HHHHcC
Confidence            998876

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.22  E-value=0.011  Score=51.19  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=46.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNT---HP--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR   75 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~   75 (191)
                      +-+++.+..|.|.+.+.+|...+..+..   +|        |..+.|..++.  .+.++.++.-|+-.|.|...
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~--~~~~~~lq~~Aa~aL~nias  130 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG--KTDCSPIQFESAWALTNIAS  130 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC--CCCCHHHHHHHHHHHHHHhc
Confidence            5677788899999999999999987642   23        45777888875  34567888888888888653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.21  E-value=0.018  Score=52.03  Aligned_cols=161  Identities=13%  Similarity=0.004  Sum_probs=110.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcC--C-----ChHHHHHHHHhhhCCC-ChhHHhHHHHHHHHhhhhhhcC-C--Ch
Q psy9906          15 QLLKESQSPDNLIQRAVQHKLEQLNTH--P-----DFNNYLIFVLTKLTSE-DEPTRSLSGLILKNNVRARFYE-F--PP   83 (191)
Q Consensus        15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~--~-----~~~~~L~~il~~~~~~-~~~vRq~A~i~LKn~i~~~W~~-i--~~   83 (191)
                      .++....++++.+|+++-..|..+...  |     ++...|...+   ++. +..+|+.|...|+..... +.. .  -.
T Consensus        99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l---~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~  174 (861)
T 2bpt_A           99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNT---GAEQPENVKRASLLALGYMCES-ADPQSQALV  174 (861)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHT---STTSCHHHHHHHHHHHHHHHHT-SSTTSSTTG
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHc-CChhhhHHH
Confidence            344555677889999998888875431  3     3444444444   344 788999998888777653 332 1  23


Q ss_pred             hHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhC---C--CCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-
Q psy9906          84 GVSEFIKQECLSAIGDP--SPLIRATVGILITTIASKG---D--LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE-  155 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~~~--~~~ir~~~~~~i~~Ia~~e---~--~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-  155 (191)
                      .....+-..++..+.++  +..+|..+..++..++..-   .  ...|+.+++.+.+.+.++++..+..++.+|..+.+ 
T Consensus       175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~  254 (861)
T 2bpt_A          175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK  254 (861)
T ss_dssp             GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            44566777778888876  7899999999998875432   1  12367799999998888888888888877744443 


Q ss_pred             -------------------hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         156 -------------------TLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       156 -------------------~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                                         .+.+.+..+|..++..++.+++..
T Consensus       255 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~  297 (861)
T 2bpt_A          255 YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE  297 (861)
T ss_dssp             HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence                               123456788999998888887753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0097  Score=47.03  Aligned_cols=148  Identities=11%  Similarity=0.153  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhc--C-CChH-HHHHH----HHhhhCCCChhHHhHHHHHHHHhhhhhh
Q psy9906           9 GLIQILQLLKESQ--SPDNLIQRAVQHKLEQLNT--H-PDFN-NYLIF----VLTKLTSEDEPTRSLSGLILKNNVRARF   78 (191)
Q Consensus         9 ~~~~l~~lL~~~~--s~d~~~r~~AE~~L~~~~~--~-~~~~-~~L~~----il~~~~~~~~~vRq~A~i~LKn~i~~~W   78 (191)
                      ++.++++.|...+  .+|..+|..|-..|.++..  . ++|. .|...    ++...++....||..|.-.|...+..- 
T Consensus        57 ~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~-  135 (249)
T 2qk1_A           57 NYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY-  135 (249)
T ss_dssp             CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS-
T ss_pred             cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-
Confidence            3456666666665  6788899999999888765  4 5666 55443    333334556789988888888888753 


Q ss_pred             cCCChh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC--C----CC-chHHHHHHHHhhcCCccccchhhhHH
Q psy9906          79 YEFPPG-VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL--K----SW-PELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus        79 ~~i~~~-~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~--~----~W-pell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                      +..... .-+.+=+.|+..|.+.++.+|..+..+|+.++..-..  .    .- |+++|.+...+.+++...+..+..++
T Consensus       136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l  215 (249)
T 2qk1_A          136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF  215 (249)
T ss_dssp             CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            111111 1234666888999988999999999999999987642  2    34 89999999999999999999999999


Q ss_pred             HHHhhhc
Q psy9906         151 PILKETL  157 (191)
Q Consensus       151 ~~l~e~l  157 (191)
                      ..++..+
T Consensus       216 ~~i~~~v  222 (249)
T 2qk1_A          216 AILIKIF  222 (249)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.12  E-value=0.021  Score=49.60  Aligned_cols=166  Identities=15%  Similarity=0.160  Sum_probs=100.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh----
Q psy9906          13 ILQLLKESQSPDNLIQRAVQHKLEQLNT---HP--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR----   77 (191)
Q Consensus        13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~----   77 (191)
                      +-+++.+..|+|.+.+.+|-..+..+-.   .|        |..+.|..++.  .+.++.++.-|+-.|.|.....    
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~--~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG--KTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc--CCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            5667888899999999999999887542   22        45667778874  3556788888888888765410    


Q ss_pred             ----------------------------hc-----CCChhHHHHHHH-----HHHHhhCCC-----CHHHHHHHHHHHHH
Q psy9906          78 ----------------------------FY-----EFPPGVSEFIKQ-----ECLSAIGDP-----SPLIRATVGILITT  114 (191)
Q Consensus        78 ----------------------------W~-----~i~~~~k~~ik~-----~ll~~l~~~-----~~~ir~~~~~~i~~  114 (191)
                                                  |-     .-+++.|..+.+     .++..|..+     ...+.+.++.+++.
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence                                        00     012333333321     233333321     12334445555555


Q ss_pred             HHhhC-CCCCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHH
Q psy9906         115 IASKG-DLKSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGIL  170 (191)
Q Consensus       115 Ia~~e-~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~  170 (191)
                      +++.. ....+   .+++|.|..++.++++.....+..+|.++.+                    -+.+.+..++..++.
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            55544 22222   3467778888877777666666666655543                    234567888888888


Q ss_pred             HHHHHhhhhh
Q psy9906         171 ALGAIAEVNK  180 (191)
Q Consensus       171 ~~~ai~~~~~  180 (191)
                      ++|.|+.|.+
T Consensus       316 aL~nl~~~~~  325 (529)
T 3tpo_A          316 AIGNIVTGTD  325 (529)
T ss_dssp             HHHHHTTSCH
T ss_pred             HHHHHHccch
Confidence            8888876543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.91  E-value=0.01  Score=53.07  Aligned_cols=132  Identities=12%  Similarity=0.122  Sum_probs=81.3

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHH
Q psy9906          16 LLKESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQEC   93 (191)
Q Consensus        16 lL~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~l   93 (191)
                      ++....|+|-..||-+.-.+..+.+ +|+........+. ..++.++.+|-+|.-.+=+..       .++.-+.+-..+
T Consensus        79 vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~~v  151 (621)
T 2vgl_A           79 AVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAGEI  151 (621)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTTHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHHHH
Confidence            3344445566666666666665544 2333322222221 123445555555555544332       245556677777


Q ss_pred             HHhh--CCCCHHHHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          94 LSAI--GDPSPLIRATVGILITTIASKGDLKSWP--ELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        94 l~~l--~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp--ell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      .+++  .++++.||+.++.++..+.+.++ +.=+  ++++.+..++.++|+....+++.++..+++
T Consensus       152 ~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          152 PKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             HHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence            8888  78999999999999999999873 2223  667777778877788777777777765554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.78  E-value=0.0092  Score=53.16  Aligned_cols=126  Identities=13%  Similarity=0.084  Sum_probs=73.7

Q ss_pred             cCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHH-hhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhC
Q psy9906          21 QSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVL-TKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIG   98 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il-~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~   98 (191)
                      .++|-..||-+.-.+..+.. +|+........+ ...++.++.+|-+|.-.|=+..       +++.-+.+-..+..+|.
T Consensus        80 ~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~  152 (618)
T 1w63_A           80 ASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLK  152 (618)
T ss_dssp             HSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHc
Confidence            36677777777777776654 344322222222 2234556667766666554443       23333455566667777


Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906          99 DPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK  154 (191)
Q Consensus        99 ~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~  154 (191)
                      ++++.||++++.++..|.+.. |+.=+++++.+..++.+.|+..+.+++.+|..++
T Consensus       153 ~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~  207 (618)
T 1w63_A          153 TSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMC  207 (618)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence            788888888888888888765 2222355566666666666655555555554443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=96.77  E-value=0.018  Score=46.84  Aligned_cols=132  Identities=10%  Similarity=0.084  Sum_probs=95.5

Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906          19 ESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus        19 ~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      -..++++++|.+|=..|-.+...          .|....|+.++..  +.+..+|.-|+-.|-|.+..+-    +..+..
T Consensus        90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~~~~----~~~~~~  163 (296)
T 1xqr_A           90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVREQE----AGLLQF  163 (296)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTTCH----HHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCc----HHHHHH
Confidence            34578999999999888876542          2667778888852  3467899999888888775321    111122


Q ss_pred             HH----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          89 IK----QECLSAIGDPSPLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        89 ik----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      +.    ..|+..|.+++..++..++.+++.++........    .++++.|+.++.+++...++.++.+|..+...
T Consensus       164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            22    2566667788999999999999999987522111    36889999999999988899999988666543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.72  E-value=0.014  Score=53.44  Aligned_cols=134  Identities=13%  Similarity=0.133  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      +..|+.+|.   ++|..+|..|-..|..+..          .++....|..++.  .+.+..+|..|+-.|++... .  
T Consensus       152 ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~--~~~d~~vr~~Aa~aL~~Ls~-~--  223 (780)
T 2z6g_A          152 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTSGTLHNLSH-H--  223 (780)
T ss_dssp             HHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHT-S--
T ss_pred             HHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHc--CCCCHHHHHHHHHHHHHHhC-C--
Confidence            344555554   6789999999999988765          2467778888875  23578899999999998433 2  


Q ss_pred             CCChhHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906          80 EFPPGVSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus        80 ~i~~~~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                         ++.+..     +=..|++.|.++++.++..++.++..|+.......    =.+.++.|+.++.+++....+.++.+|
T Consensus       224 ---~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL  300 (780)
T 2z6g_A          224 ---REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  300 (780)
T ss_dssp             ---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             ---chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence               111222     22366777778889999999999999998753211    136889999999987766666666565


Q ss_pred             HHHh
Q psy9906         151 PILK  154 (191)
Q Consensus       151 ~~l~  154 (191)
                      ..+.
T Consensus       301 ~~La  304 (780)
T 2z6g_A          301 QILA  304 (780)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.52  E-value=0.0048  Score=43.45  Aligned_cols=112  Identities=11%  Similarity=-0.034  Sum_probs=76.0

Q ss_pred             CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906          42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL  121 (191)
Q Consensus        42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~  121 (191)
                      |.+...+...+.   +.+..+|..|+..|.+.        ....   + ..|++.|.++++.+|..++.+++.+..    
T Consensus        11 ~~~~~~l~~~L~---~~~~~vR~~A~~~L~~~--------~~~~---~-~~L~~~L~d~~~~vR~~A~~aL~~~~~----   71 (131)
T 1te4_A           11 SSGLVPRGSHMA---DENKWVRRDVSTALSRM--------GDEA---F-EPLLESLSNEDWRIRGAAAWIIGNFQD----   71 (131)
T ss_dssp             ----------CC---SSCCCSSSSCCSSTTSC--------SSTT---H-HHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred             cccHHHHHHHhc---CCCHHHHHHHHHHHHHh--------CchH---H-HHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence            556666666663   45677888887666432        1111   3 678888999999999999888887752    


Q ss_pred             CCCchHHHHHHHHhhcCCccccchhhhHHHHHh---------hhcCCCcHHHHHHHHHHHHHH
Q psy9906         122 KSWPELLPTLNDMLDSQDYNVCELLPVLLPILK---------ETLFHHDWEIKESGILALGAI  175 (191)
Q Consensus       122 ~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~---------e~l~~~~~~~r~~~i~~~~ai  175 (191)
                         ++.++.|...+.++++..+..+...|..+.         +-+.+.+..+|..++.+++.|
T Consensus        72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence               578899999998888888888887775554         345677899999998888754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.46  E-value=0.058  Score=45.93  Aligned_cols=133  Identities=14%  Similarity=0.146  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      +..|+.+|.   ++|..+|..|-..|..+...          ++....|..++.  .+.+..+|..|+-.|++....   
T Consensus        19 i~~Lv~lL~---~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~--~~~~~~~~~~a~~~L~~ls~~---   90 (529)
T 1jdh_A           19 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTAGTLHNLSHH---   90 (529)
T ss_dssp             HHHHHHHHT---CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTTS---
T ss_pred             HHHHHHHhC---CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHh--cCCCHHHHHHHHHHHHHHHcC---
Confidence            344444443   67999999999999887642          345666777774  244788999999999885432   


Q ss_pred             CCChhHHHHHH-----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906          80 EFPPGVSEFIK-----QECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus        80 ~i~~~~k~~ik-----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                         ++.+..+.     ..+++.|.++++.++..++.++..++..+....    =.+.+|.|++++.++++.....+..+|
T Consensus        91 ---~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L  167 (529)
T 1jdh_A           91 ---REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  167 (529)
T ss_dssp             ---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             ---chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence               23333332     266677778889999999999999998853211    146889999999988766655555555


Q ss_pred             HHH
Q psy9906         151 PIL  153 (191)
Q Consensus       151 ~~l  153 (191)
                      ..+
T Consensus       168 ~~l  170 (529)
T 1jdh_A          168 QIL  170 (529)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.45  E-value=0.031  Score=49.72  Aligned_cols=114  Identities=8%  Similarity=0.073  Sum_probs=86.4

Q ss_pred             CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhh
Q psy9906          57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLD  136 (191)
Q Consensus        57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~  136 (191)
                      +.+...|+++-+++.++...     .++....+-+.+.+.|.++++.+|..+..+++.|+..+   --+++++.+..++.
T Consensus        81 s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~---~~~~l~~~l~~~L~  152 (618)
T 1w63_A           81 SQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE---MCRDLAGEVEKLLK  152 (618)
T ss_dssp             SSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHc
Confidence            45677788888777766543     35555567778888899999999988888888887433   23567999999999


Q ss_pred             cCCccccchhhhHHHHHhh---------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         137 SQDYNVCELLPVLLPILKE---------------TLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       137 ~~~~~~~~~~l~~L~~l~e---------------~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                      ++++..+..|..++..+.+               -+.+.+..++.+|+.+++.|.+.
T Consensus       153 ~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          153 TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence            9999888888888855542               23356789999999999988754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.37  E-value=0.085  Score=49.41  Aligned_cols=89  Identities=16%  Similarity=0.133  Sum_probs=64.8

Q ss_pred             HHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh-hcCCccccchhhhHHHHHhh---------
Q psy9906          87 EFIKQECLSA-IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDML-DSQDYNVCELLPVLLPILKE---------  155 (191)
Q Consensus        87 ~~ik~~ll~~-l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l-~~~~~~~~~~~l~~L~~l~e---------  155 (191)
                      ..|+ .||.. ..+.+..+|+.+...++.|+-.+     |+..+.+++.+ ++.|+..+.++...|..++-         
T Consensus       577 ~aIq-~LL~~~~~d~~d~VRraAViaLGlI~~g~-----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid  650 (963)
T 4ady_A          577 SAVK-RLLHVAVSDSNDDVRRAAVIALGFVLLRD-----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID  650 (963)
T ss_dssp             HHHH-HHHHHHHHCSCHHHHHHHHHHHHHHTSSS-----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred             HHHH-HHHHHhccCCcHHHHHHHHHHHHhhccCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH
Confidence            3444 34443 44678889998888888887665     46777777754 45688888888888877752         


Q ss_pred             ----hcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906         156 ----TLFHHDWEIKESGILALGAIAEVNKS  181 (191)
Q Consensus       156 ----~l~~~~~~~r~~~i~~~~ai~~~~~~  181 (191)
                          -..+++..+|..|+.++|-|.-|--.
T Consensus       651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          651 VLDPLTKDPVDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence                23467899999999999999877433

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.25  E-value=0.45  Score=40.28  Aligned_cols=150  Identities=17%  Similarity=0.098  Sum_probs=97.7

Q ss_pred             cCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906          21 QSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK   90 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik   90 (191)
                      .+++..+|..+-..|..+..          ..+....|..++..  ..+...+..++-.|+|.-.      .++.+..+.
T Consensus       153 ~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~~~~~~a~~~L~~l~~------~~~~~~~~~  224 (529)
T 1jdh_A          153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRVLKVLSV------CSSNKPAIV  224 (529)
T ss_dssp             GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh--CChHHHHHHHHHHHHHHhc------CcccHHHHH
Confidence            34677777777666654432          13567777777752  3344455555556666542      233344332


Q ss_pred             -H----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh--------
Q psy9906          91 -Q----ECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET--------  156 (191)
Q Consensus        91 -~----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~--------  156 (191)
                       .    .+++.+.+++..++..++.++..+++...+ ..-.+++|.|++++.++++..++.+..+|..++..        
T Consensus       225 ~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  304 (529)
T 1jdh_A          225 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  304 (529)
T ss_dssp             HTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence             2    344455567889999999999999987632 22357999999999988888777777777666431        


Q ss_pred             ------------cC--CCcHHHHHHHHHHHHHHhhh
Q psy9906         157 ------------LF--HHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       157 ------------l~--~~~~~~r~~~i~~~~ai~~~  178 (191)
                                  +.  +.++.+++.++.+++.+..+
T Consensus       305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence                        11  12378999999999988764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=96.22  E-value=0.087  Score=45.65  Aligned_cols=160  Identities=16%  Similarity=0.117  Sum_probs=106.2

Q ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          11 IQILQLLKES-QSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        11 ~~l~~lL~~~-~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      ..++..|... .++|.+++..|-..|..+..          ..|....|..++.   +.+..++..|+-.|.|....   
T Consensus       250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~---  323 (529)
T 3tpo_A          250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTG---  323 (529)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTS---
T ss_pred             hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHcc---
Confidence            4444444443 46788899888877766553          2456667777764   56788999999899887642   


Q ss_pred             CCChhHHHHH-HH----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcCCccccchhhhHH
Q psy9906          80 EFPPGVSEFI-KQ----ECLSAIGDPSPLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus        80 ~i~~~~k~~i-k~----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                        +++.+..+ ..    .++..|.++++.+|..++.+++.|+........    .+++|.|+.++.+++...+..+..+|
T Consensus       324 --~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  401 (529)
T 3tpo_A          324 --TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI  401 (529)
T ss_dssp             --CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             --chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence              23333322 22    355566778899999999999999876421110    25889999999988876665555555


Q ss_pred             HHH---------------------hhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         151 PIL---------------------KETLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       151 ~~l---------------------~e~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                      .-+                     ++-+...|..++..++.++..|...
T Consensus       402 ~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          402 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            322                     2234456888888888888777653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=96.14  E-value=0.17  Score=43.59  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=104.8

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhC--CCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906          17 LKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLT--SEDEPTRSLSGLILKNNVRARFYEFPPG   84 (191)
Q Consensus        17 L~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~--~~~~~vRq~A~i~LKn~i~~~W~~i~~~   84 (191)
                      +.-..++|..+|.+|-..|.++..+          .|....|+.++....  .....+...++-.|.|.....-......
T Consensus       149 v~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  228 (510)
T 3ul1_B          149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  228 (510)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH
Confidence            3334578999999999988887642          244555666664210  0122333444555555544321222222


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHhh-----
Q psy9906          85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE-----  155 (191)
Q Consensus        85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-----  155 (191)
                      ....+-..|+..+.+++..++..++.+++.++......    .-.++++.|++++.+++...+..++.+|..+..     
T Consensus       229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~  308 (510)
T 3ul1_B          229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  308 (510)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH
Confidence            22344456777888899999999999999998654110    124578999999999888888888887755531     


Q ss_pred             ---------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 ---------------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 ---------------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                                     -+.+++..+|..+..+++.|..|..
T Consensus       309 ~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~  348 (510)
T 3ul1_B          309 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ  348 (510)
T ss_dssp             HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH
Confidence                           1234578899999999998876543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.08  E-value=0.00083  Score=47.53  Aligned_cols=108  Identities=14%  Similarity=0.155  Sum_probs=79.2

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCC
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDP  100 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~  100 (191)
                      .++|..+|..|-..|..+.. +. ...|...+.   +.+..+|..|+..|-+.-.       +    ..-..|+..+.++
T Consensus        22 ~~~~~~vR~~A~~~L~~~~~-~~-~~~L~~~L~---d~~~~vR~~A~~aL~~~~~-------~----~a~~~L~~~L~d~   85 (131)
T 1te4_A           22 ADENKWVRRDVSTALSRMGD-EA-FEPLLESLS---NEDWRIRGAAAWIIGNFQD-------E----RAVEPLIKLLEDD   85 (131)
T ss_dssp             CSSCCCSSSSCCSSTTSCSS-TT-HHHHHHGGG---CSCHHHHHHHHHHHGGGCS-------H----HHHHHHHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHHhCc-hH-HHHHHHHHc---CCCHHHHHHHHHHHHhcCC-------H----HHHHHHHHHHcCC
Confidence            45788899888888876654 34 466766663   4688999999988765421       1    2345667777788


Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHH
Q psy9906         101 SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLP  151 (191)
Q Consensus       101 ~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~  151 (191)
                      ++.+|..++.+++.+.       -++.++.|...++++++..+..+...|.
T Consensus        86 ~~~VR~~A~~aL~~~~-------~~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           86 SGFVRSGAARSLEQIG-------GERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             CTHHHHHHHHHHHHHC-------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999999886       2678899999998877777776666553

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.02  E-value=0.054  Score=48.07  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      +..|+.+|.   ++|..+|..|-..|.++....          +....|...+.  .+.+..+|..|+-.|++....   
T Consensus        16 i~~Lv~lL~---~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~--~~~~~~~~~~A~~~L~~Ls~~---   87 (644)
T 2z6h_A           16 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTAGTLHNLSHH---   87 (644)
T ss_dssp             HHHHHHHHT---CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHTTS---
T ss_pred             HHHHHHHHc---CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHh--cCCCHHHHHHHHHHHHHHhcC---
Confidence            445555554   679999999999999887643          34555666664  345788999999888865432   


Q ss_pred             CCChhHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906          80 EFPPGVSEFI-----KQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL  150 (191)
Q Consensus        80 ~i~~~~k~~i-----k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L  150 (191)
                         ++.+..+     -..+++.|.++++.++..++.++..++..+.+..    =.+.+|.|+.++.++++.....+..+|
T Consensus        88 ---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  164 (644)
T 2z6h_A           88 ---REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  164 (644)
T ss_dssp             ---HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             ---hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence               1233322     2356777778889999999999999998863211    146899999999988765555555555


Q ss_pred             HHHh
Q psy9906         151 PILK  154 (191)
Q Consensus       151 ~~l~  154 (191)
                      ..+.
T Consensus       165 ~~La  168 (644)
T 2z6h_A          165 QILA  168 (644)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=95.76  E-value=0.53  Score=42.93  Aligned_cols=149  Identities=19%  Similarity=0.133  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-H
Q psy9906          22 SPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-K   90 (191)
Q Consensus        22 s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-k   90 (191)
                      +++..++..|-..|..+..          ..+....|..++.  ...+...+..|+-.|++.-.      .++.+..+ +
T Consensus       287 ~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~--~~~~~~~~~~a~~aL~~Ls~------~~~~~~~i~~  358 (780)
T 2z6g_A          287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR--TYTYEKLLWTTSRVLKVLSV------CSSNKPAIVE  358 (780)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHT------STTHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhhc------ChHHHHHHHH
Confidence            4577777777666654432          2466777777774  23344455555566666543      12333333 3


Q ss_pred             ----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh---------
Q psy9906          91 ----QECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET---------  156 (191)
Q Consensus        91 ----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~---------  156 (191)
                          ..|+..+.+.+..++..++.++..++....+ ..-.++++.|++++.+.++..++.+..+|..+...         
T Consensus       359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~  438 (780)
T 2z6g_A          359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC  438 (780)
T ss_dssp             TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                3455566667888888999999999987632 22367999999999988888888888888666531         


Q ss_pred             -----------cCC-CcH-HHHHHHHHHHHHHhhh
Q psy9906         157 -----------LFH-HDW-EIKESGILALGAIAEV  178 (191)
Q Consensus       157 -----------l~~-~~~-~~r~~~i~~~~ai~~~  178 (191)
                                 +.+ .++ .+|+.++.++|.|..+
T Consensus       439 ~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~  473 (780)
T 2z6g_A          439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  473 (780)
T ss_dssp             TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence                       111 233 7899999999988753

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=95.72  E-value=0.15  Score=42.58  Aligned_cols=137  Identities=12%  Similarity=0.030  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      .-+..++....++|-..||-..-.+..+.+.++ .....-.+....++.++-+|-.|.=.|=+.       .+++.-+.+
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I-------~~~~m~~~l  140 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQI-------TDSTMLQAI  140 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHH-------CCTTTHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcC-------CCHHHHHHH
Confidence            334555667788999999999999999987655 332222333233456777777766555433       334555666


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      -..+-++|.+.++.||+.++-++..+....+. -=..+++.+.+++.+.|+-....++.+|..+++
T Consensus       141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence            67788899999999999999999988766521 112345666677777676555555655555554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.60  E-value=0.67  Score=37.01  Aligned_cols=169  Identities=16%  Similarity=0.076  Sum_probs=109.2

Q ss_pred             CCChHHHHHHHHHHHH---------hcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhh-----hCCCChhHHhHHHH
Q psy9906           4 QPQEEGLIQILQLLKE---------SQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTK-----LTSEDEPTRSLSGL   68 (191)
Q Consensus         4 ~p~~~~~~~l~~lL~~---------~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~-----~~~~~~~vRq~A~i   68 (191)
                      +|.++.+++|...+..         .+++|-..|-+|-+.|.+.-. .|......++++..     .-+.+..+=+.+.-
T Consensus        30 ~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~  109 (266)
T 2of3_A           30 APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE  109 (266)
T ss_dssp             SCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            3555556555554443         356788888888888875443 45443333333211     11335666666666


Q ss_pred             HHHHhhhhh---hcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccch
Q psy9906          69 ILKNNVRAR---FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCEL  145 (191)
Q Consensus        69 ~LKn~i~~~---W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~  145 (191)
                      +|...+..-   =..+.+.+-..+=..|++-+.++...+|..+-.++..+...-+|.   -+++.+.+.+.+.|+..++.
T Consensus       110 ~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~---~v~~~l~~g~ksKN~R~R~e  186 (266)
T 2of3_A          110 LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSE  186 (266)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHccCCHHHHHH
Confidence            777766531   123667666667788888899999999999999998888764322   26677777777777766666


Q ss_pred             hhhHH------------------HHHhhhcCCCcHHHHHHHHHHHHHH
Q psy9906         146 LPVLL------------------PILKETLFHHDWEIKESGILALGAI  175 (191)
Q Consensus       146 ~l~~L------------------~~l~e~l~~~~~~~r~~~i~~~~ai  175 (191)
                      .+.++                  +.+...+-++|-.+|.+|+.++..+
T Consensus       187 ~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~  234 (266)
T 2of3_A          187 CLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC  234 (266)
T ss_dssp             HHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            65544                  4445555677889999998776653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=95.27  E-value=1.3  Score=39.14  Aligned_cols=148  Identities=19%  Similarity=0.125  Sum_probs=98.5

Q ss_pred             CCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906          22 SPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ   91 (191)
Q Consensus        22 s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~   91 (191)
                      +++...+..|-..|..+..          ..+....|..++.  ......++..++-.|+|.-.      .++.|..+.+
T Consensus       151 ~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~--~~~~~~~~~~a~~~L~nLs~------~~~~~~~l~~  222 (644)
T 2z6h_A          151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR--TYTYEKLLWTTSRVLKVLSV------CSSNKPAIVE  222 (644)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTT------CTTHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHH--cCChHHHHHHHHHHHHHHhc------CcccHHHHHH
Confidence            4456666666556665542          1356677777775  23345666667777776642      2344444332


Q ss_pred             -----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHhhcCCccccchhhhHHHHHhhh---------
Q psy9906          92 -----ECLSAIGDPSPLIRATVGILITTIASKGDLK-SWPELLPTLNDMLDSQDYNVCELLPVLLPILKET---------  156 (191)
Q Consensus        92 -----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~---------  156 (191)
                           .+++.+.+.+..++..++.++..+++..... .-.++++.|++++.++++..++.+..+|..++..         
T Consensus       223 ~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~  302 (644)
T 2z6h_A          223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC  302 (644)
T ss_dssp             TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                 3445556678899999999999999876332 2347999999999988888888888887666531         


Q ss_pred             -----------cCC-Cc-HHHHHHHHHHHHHHhh
Q psy9906         157 -----------LFH-HD-WEIKESGILALGAIAE  177 (191)
Q Consensus       157 -----------l~~-~~-~~~r~~~i~~~~ai~~  177 (191)
                                 +.+ .+ ..+++.++.+++.|..
T Consensus       303 ~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence                       111 22 7899999999998864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=94.77  E-value=0.93  Score=38.48  Aligned_cols=115  Identities=19%  Similarity=0.162  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-C---------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-P---------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY   79 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~---------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~   79 (191)
                      +..++++|.   ++|.+.+..|-..|..+... +         |....|..++.   +.+..++..|+-.|+|....   
T Consensus         4 l~~lv~~L~---s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~~~~~A~~aL~nLa~~---   74 (457)
T 1xm9_A            4 IPKAVQYLS---SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR---SPNQNVQQAAAGALRNLVFR---   74 (457)
T ss_dssp             HHHHHHHHH---SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT---SSCHHHHHHHHHHHHHHHSS---
T ss_pred             HHHHHHHHC---CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC---
Confidence            455666664   56778999999999887642 2         34556666663   46788999999999988762   


Q ss_pred             CCChhHHHHHHH-----HHHHhhC-CCCHHHHHHHHHHHHHHHhhCCCCC--CchHHHHHHHHh
Q psy9906          80 EFPPGVSEFIKQ-----ECLSAIG-DPSPLIRATVGILITTIASKGDLKS--WPELLPTLNDML  135 (191)
Q Consensus        80 ~i~~~~k~~ik~-----~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e~~~~--Wpell~~L~~~l  135 (191)
                        +++.|..|.+     .+++.|. +++..++..++.++..++..+....  -.+.+|.|++++
T Consensus        75 --~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll  136 (457)
T 1xm9_A           75 --STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV  136 (457)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence              3677777754     6777888 6789999999999999998852210  116788888888

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=94.70  E-value=0.55  Score=41.76  Aligned_cols=115  Identities=11%  Similarity=0.094  Sum_probs=80.4

Q ss_pred             CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh
Q psy9906          56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDML  135 (191)
Q Consensus        56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l  135 (191)
                      ++.+...|+++-+++.+....     .++.-..+=+.+.+-|.++++.+|..+-.+++.|..   |+--+.+.+.+.+.+
T Consensus        84 ~s~~~~~Krl~YL~l~~~~~~-----~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l  155 (621)
T 2vgl_A           84 SSNRYTEKQIGYLFISVLVNS-----NSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFAGEIPKIL  155 (621)
T ss_dssp             GCSCHHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHccC-----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHH
Confidence            355677777777777776643     244444555677778889999999877777777754   334567888888998


Q ss_pred             --hcCCccccchhhhHHHHHhh-----------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         136 --DSQDYNVCELLPVLLPILKE-----------------TLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       136 --~~~~~~~~~~~l~~L~~l~e-----------------~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                        .+.++..+..|..++..+.+                 -+.+.+..++.+|+.+++.|...
T Consensus       156 ~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          156 VAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             HCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence              77777777777777644433                 23345788999998888888763

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=93.98  E-value=2.8  Score=38.64  Aligned_cols=140  Identities=14%  Similarity=0.022  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH-------HHH
Q psy9906          28 QRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE-------FIK   90 (191)
Q Consensus        28 r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~-------~ik   90 (191)
                      +..|=..|.++...          .|.+..|..++.   +.+..+|..|+-.+.|.....      +.+.       .++
T Consensus       598 ~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~---s~~~~Vq~~A~~~L~NLa~~~------~~~~~~v~~~g~l~  668 (810)
T 3now_A          598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM---EDHLYLTRAAAQCLCNLVMSE------DVIKMFEGNNDRVK  668 (810)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SCCTTHHHHHHHHHHHHTTSH------HHHHHHHSSSSHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCh------HHHHHHHhccCcHH
Confidence            34555555555443          366777777775   346779999999999987621      1111       222


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHhhC------CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------
Q psy9906          91 QECLSAIGDPSPLIRATVGILITTIASKG------DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------  155 (191)
Q Consensus        91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e------~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------  155 (191)
                       .|+..+.+++..+|..++.+++.|+...      -.+. ...++.|++++.+++...++.+..++.-+..         
T Consensus       669 -~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l  746 (810)
T 3now_A          669 -FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKL  746 (810)
T ss_dssp             -HHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -HHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence             5666777788999999999999999832      1232 5788999999999988887777777633321         


Q ss_pred             ----------hc-CCC---cHHHHHHHHHHHHHHhhh
Q psy9906         156 ----------TL-FHH---DWEIKESGILALGAIAEV  178 (191)
Q Consensus       156 ----------~l-~~~---~~~~r~~~i~~~~ai~~~  178 (191)
                                .+ ..+   +..+.+.|+.++..|++.
T Consensus       747 ~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~  783 (810)
T 3now_A          747 FETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY  783 (810)
T ss_dssp             HTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence                      11 122   467777787777776653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=93.82  E-value=0.69  Score=42.66  Aligned_cols=129  Identities=10%  Similarity=0.042  Sum_probs=84.5

Q ss_pred             ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-H----HHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9906          43 DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-K----QECLSAIGDPSPLIRATVGILITTIAS  117 (191)
Q Consensus        43 ~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-k----~~ll~~l~~~~~~ir~~~~~~i~~Ia~  117 (191)
                      |....|..++.   +.++.+|..|+-.|.|....      ++.|..| +    ..|+..|.+.++..+..++.+++.++.
T Consensus       495 GaVp~LV~LL~---s~s~~vqe~Aa~aL~NLA~d------~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~  565 (810)
T 3now_A          495 GITTALCALAK---TESHNSQELIARVLNAVCGL------KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI  565 (810)
T ss_dssp             THHHHHHHHHT---CCCHHHHHHHHHHHHHHHTS------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHc---CCCHHHHHHHHHHHHHHcCC------HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence            55666777763   56788999999999888531      3344432 2    245566667888999999999999987


Q ss_pred             hCCC-CCC-----chHHHHHHHHhhcCCc-cccchhhhHHHHH--------------------hhhcCCCcHHHHHHHHH
Q psy9906         118 KGDL-KSW-----PELLPTLNDMLDSQDY-NVCELLPVLLPIL--------------------KETLFHHDWEIKESGIL  170 (191)
Q Consensus       118 ~e~~-~~W-----pell~~L~~~l~~~~~-~~~~~~l~~L~~l--------------------~e~l~~~~~~~r~~~i~  170 (191)
                      ..-| ..+     .+.+|.|++++.+++. ....-++.+|..+                    .+-+.+.+..+|.+|..
T Consensus       566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~  645 (810)
T 3now_A          566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ  645 (810)
T ss_dssp             HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            6422 112     2478889998875422 2222334444333                    22345667889999999


Q ss_pred             HHHHHhhhhh
Q psy9906         171 ALGAIAEVNK  180 (191)
Q Consensus       171 ~~~ai~~~~~  180 (191)
                      +++.|+.+.+
T Consensus       646 ~L~NLa~~~~  655 (810)
T 3now_A          646 CLCNLVMSED  655 (810)
T ss_dssp             HHHHHTTSHH
T ss_pred             HHHHHhCChH
Confidence            9999887654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=93.65  E-value=0.42  Score=42.66  Aligned_cols=115  Identities=20%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             CCChhHHhHHHHHHHHhhhhhh------cCCChhHHHHHHHHHHHhhC---C-----CCHHHHHHHHHHHHHHHhhCCCC
Q psy9906          57 SEDEPTRSLSGLILKNNVRARF------YEFPPGVSEFIKQECLSAIG---D-----PSPLIRATVGILITTIASKGDLK  122 (191)
Q Consensus        57 ~~~~~vRq~A~i~LKn~i~~~W------~~i~~~~k~~ik~~ll~~l~---~-----~~~~ir~~~~~~i~~Ia~~e~~~  122 (191)
                      +..=++|+-|++-||-.++.+=      .....  --.+|=-.+-+|-   +     ....||..+|++++.+ .+-++.
T Consensus       185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e  261 (800)
T 3oc3_A          185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP  261 (800)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS
T ss_pred             CcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh
Confidence            3455899999999999998641      11222  2244433333442   1     3579999999999999 776555


Q ss_pred             CCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc--------------CCCcHHHHHHHHHHHHHHh
Q psy9906         123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL--------------FHHDWEIKESGILALGAIA  176 (191)
Q Consensus       123 ~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l--------------~~~~~~~r~~~i~~~~ai~  176 (191)
                        -..+..++..+..+.|..++|+|.-|+|+.+-+              .+.|-++|-.|..++..|+
T Consensus       262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA  327 (800)
T 3oc3_A          262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP  327 (800)
T ss_dssp             --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred             --HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence              355666665557778999999999999995532              4456778887777777776

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=93.64  E-value=0.91  Score=35.89  Aligned_cols=134  Identities=14%  Similarity=0.051  Sum_probs=76.3

Q ss_pred             CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-
Q psy9906          42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-  120 (191)
Q Consensus        42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-  120 (191)
                      .+....|..++   +..+..++.-|.+.+++.++..-..+....-+.+=..+++.+.+.+..+.-.+..|+..+....+ 
T Consensus        32 e~~l~~L~~LL---~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL  108 (265)
T 3b2a_A           32 KRALFLILELA---GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM  108 (265)
T ss_dssp             HHHHHHHHHHT---TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred             hhHHHHHHHHH---hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence            45677777777   35678889889999999988643223233333344445555555666666666666666666553 


Q ss_pred             -CCCCchHHHHHHHHhhcCCccccchhhhHHH-------------HHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906         121 -LKSWPELLPTLNDMLDSQDYNVCELLPVLLP-------------ILKETLFHHDWEIKESGILALGAIAEV  178 (191)
Q Consensus       121 -~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~-------------~l~e~l~~~~~~~r~~~i~~~~ai~~~  178 (191)
                       ++.+--+...+.+.+.+++.-..+-+...+.             ++.+=+.+.+..++.+|+.++..|+..
T Consensus       109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence             3445555666666666555433222222222             222222344666666666666666553

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=92.68  E-value=2.7  Score=34.67  Aligned_cols=142  Identities=15%  Similarity=0.132  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-----------CCChHHHHHHHHhhhCCC--ChhHHhHHHHHHHHhhhh
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNT-----------HPDFNNYLIFVLTKLTSE--DEPTRSLSGLILKNNVRA   76 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-----------~~~~~~~L~~il~~~~~~--~~~vRq~A~i~LKn~i~~   76 (191)
                      +..|+++|..  +++.+.++.|-..|.++..           ..|....|..++.. .+.  ...++.-|+-.|+|.-..
T Consensus       172 Ip~Lv~lL~~--~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~-~~~~~~~~v~~~A~~aL~nLs~~  248 (354)
T 3nmw_A          172 VKALMECALE--VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILRNVSSL  248 (354)
T ss_dssp             HHHHHHHHHH--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc-CCCcccHHHHHHHHHHHHHHHhh
Confidence            3345554432  3567788777766665543           34666777777742 211  124777777777775431


Q ss_pred             hhcCCChhHHHHHH-----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC---C-chHHHHHHHHhhcCCccccchhh
Q psy9906          77 RFYEFPPGVSEFIK-----QECLSAIGDPSPLIRATVGILITTIASKGDLKS---W-PELLPTLNDMLDSQDYNVCELLP  147 (191)
Q Consensus        77 ~W~~i~~~~k~~ik-----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~---W-pell~~L~~~l~~~~~~~~~~~l  147 (191)
                       . .-.++.|..++     ..|++.|.+.+..++..++.++..++..+....   . -+.+|.|++++.+++...++.+.
T Consensus       249 -~-a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~  326 (354)
T 3nmw_A          249 -I-ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA  326 (354)
T ss_dssp             -H-TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred             -c-cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence             1 12355566554     356777778889999999999999985431111   0 24677788888777777777777


Q ss_pred             hHHHHHhhh
Q psy9906         148 VLLPILKET  156 (191)
Q Consensus       148 ~~L~~l~e~  156 (191)
                      .+|.-+...
T Consensus       327 ~aL~nL~~~  335 (354)
T 3nmw_A          327 AALRNLMAN  335 (354)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            777666653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=91.71  E-value=3.9  Score=31.96  Aligned_cols=106  Identities=9%  Similarity=-0.050  Sum_probs=70.7

Q ss_pred             HHHH-hcCCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-CChh-HHHHHHH
Q psy9906          16 LLKE-SQSPDNLIQRAVQHKLEQLNTHPDF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-FPPG-VSEFIKQ   91 (191)
Q Consensus        16 lL~~-~~s~d~~~r~~AE~~L~~~~~~~~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-i~~~-~k~~ik~   91 (191)
                      +++. ..++...+|..|-+.+..+-..... ...+-.++...++-++.+|..+...|.+.+..+-.. ++.. .-..+-.
T Consensus       107 lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~  186 (278)
T 4ffb_C          107 LVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLK  186 (278)
T ss_dssp             HHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGG
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHH
Confidence            4444 4567888999988888876543332 222333333235668899999999999999875332 3321 2223444


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906          92 ECLSAIGDPSPLIRATVGILITTIASKGDL  121 (191)
Q Consensus        92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~  121 (191)
                      .+..++.++++.||..+..++..+.+.-++
T Consensus       187 ~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~  216 (278)
T 4ffb_C          187 HVPQLAGHGDRNVRSQTMNLIVEIYKVTGN  216 (278)
T ss_dssp             GHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence            677778899999999999999999887653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=91.54  E-value=3.7  Score=31.48  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=87.6

Q ss_pred             HhcCCC-HHHHHHHHHHHHHhhc-CCCh-HHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCC---ChhHHHHHHH
Q psy9906          19 ESQSPD-NLIQRAVQHKLEQLNT-HPDF-NNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEF---PPGVSEFIKQ   91 (191)
Q Consensus        19 ~~~s~d-~~~r~~AE~~L~~~~~-~~~~-~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i---~~~~k~~ik~   91 (191)
                      ..++-| =.+||.|-..+....+ .|+. .+.+-.++.- ..+...+        |-.-|.+-...+   .|+.-..+-.
T Consensus        39 ~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIp--------ltqeIa~a~G~la~i~Pe~v~~vVp  110 (253)
T 2db0_A           39 ELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIP--------LTQEIAKAFGQMAKEKPELVKSMIP  110 (253)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHH--------HHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHhHHHHhCHHHHHhhHH
Confidence            334444 2478888888776655 4653 3333333321 1233322        222232222221   2332222223


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------------h
Q psy9906          92 ECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------------T  156 (191)
Q Consensus        92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------------~  156 (191)
                      .+..-+.-.++.+|-..+.++..|++.. |.--+..+..+..+++++|...+-.++..+.-+-+               =
T Consensus       111 ~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aL  189 (253)
T 2db0_A          111 VLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL  189 (253)
T ss_dssp             HHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGG
T ss_pred             HHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHH
Confidence            3334444579999999999999999986 33445566667788887775555555554433322               2


Q ss_pred             cCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         157 LFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       157 l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      +.+.|--+|-+++..++-+++-..
T Consensus       190 L~D~deiVRaSaVEtL~~lA~~np  213 (253)
T 2db0_A          190 LHDGDEIVRASAVEALVHLATLND  213 (253)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred             HcCcchhhhHHHHHHHHHHHHcCH
Confidence            345677899999999998887544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=90.41  E-value=5.2  Score=31.17  Aligned_cols=163  Identities=7%  Similarity=-0.037  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCC----------hH---HHHHHHHhhhCCCChhHHhHHHHHHHHh
Q psy9906           8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT-HPD----------FN---NYLIFVLTKLTSEDEPTRSLSGLILKNN   73 (191)
Q Consensus         8 ~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~----------~~---~~L~~il~~~~~~~~~vRq~A~i~LKn~   73 (191)
                      +++..|- +-+...|.+=..|++|-+.|...-. .+.          |.   ..+-..+   .+.+..+.+.|.-.+..+
T Consensus         7 ~d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l---~DsN~~v~~~al~~l~~~   82 (278)
T 4ffb_C            7 VDYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI---TDSNVVAQEQAIVALNSL   82 (278)
T ss_dssp             ----CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT---TCSSHHHHHHHHHHHHHH
T ss_pred             hhhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHH
Confidence            3444433 3456677788899999998876432 111          21   1222232   345677888888788777


Q ss_pred             hhhhhcC--CCh---hHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhh
Q psy9906          74 VRARFYE--FPP---GVSEFIKQECLS-AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLP  147 (191)
Q Consensus        74 i~~~W~~--i~~---~~k~~ik~~ll~-~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l  147 (191)
                      +...=..  ...   ..-..+=..|++ ++.++.+.+|.....++..++....+.  ..+++.+...+.+.++..+..++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~~~e~l~~~l~~Knpkv~~~~l  160 (278)
T 4ffb_C           83 IDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQSVELVIPFFEKKLPKLIAAAA  160 (278)
T ss_dssp             HTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HHHHHHHGGGGGCSCHHHHHHHH
T ss_pred             HHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhccCHHHHHHHH
Confidence            6532111  001   111222334444 466788899988888888888766432  35677788888888887766666


Q ss_pred             hHHHH-Hhh---------------------hcCCCcHHHHHHHHHHHHHHh
Q psy9906         148 VLLPI-LKE---------------------TLFHHDWEIKESGILALGAIA  176 (191)
Q Consensus       148 ~~L~~-l~e---------------------~l~~~~~~~r~~~i~~~~ai~  176 (191)
                      .+|.. +.+                     -+-+.+..+|.+|+.+++.+-
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            66532 222                     234678999999999887753

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=89.56  E-value=2.4  Score=33.82  Aligned_cols=104  Identities=15%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcC--CC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-
Q psy9906          14 LQLLKESQSPDNLIQRAVQHKLEQLNTH--PD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-   89 (191)
Q Consensus        14 ~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-   89 (191)
                      -.+++.+..+...+|..+.+-+..+..-  |. ...+++.-+   ++-+.-+|.-+...+-..|..+  .+++ .+ .+ 
T Consensus       135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~---ksKN~R~R~e~l~~l~~li~~~--G~~~-~~-~l~  207 (266)
T 2of3_A          135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL---KSKNARQRSECLLVIEYYITNA--GISP-LK-SLS  207 (266)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG---GCSCHHHHHHHHHHHHHHHHHH--CSGG-GG-GGC
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHhc--CCCc-cc-ccc
Confidence            3445555556666666666666655542  22 233333322   3344556666666666666553  1111 11 22 


Q ss_pred             -HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC
Q psy9906          90 -KQECLSAIGDPSPLIRATVGILITTIASKGDLKSW  124 (191)
Q Consensus        90 -k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W  124 (191)
                       ...+...+.+++..||+++-.|++.+.++.+..-|
T Consensus       208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~  243 (266)
T 2of3_A          208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW  243 (266)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence             13455556666667777666666666666654444

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=88.88  E-value=4.4  Score=36.30  Aligned_cols=143  Identities=14%  Similarity=0.049  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHH
Q psy9906          25 NLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLI  104 (191)
Q Consensus        25 ~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~i  104 (191)
                      ..+|..|-|.|-.+..-|+....|..++.......=++|+.+.+-||-.     ..+-.+ ...+-+.++.+|.+++.-|
T Consensus       242 APVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv~aVL~GL~D~DDDV  315 (800)
T 3oc3_A          242 APVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLCRKLVSLLSSPDEDI  315 (800)
T ss_dssp             CHHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHHHHHHHHTTCSSHHH
T ss_pred             eehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHHHHHHhhcCCcccHH
Confidence            3578888888877733344334444444222344568999999999866     221112 6778889999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCc--cccchhhhHHHHHhh-----------------hcCCCcHHHH
Q psy9906         105 RATVGILITTIASKGDLKSWPELLPTLNDMLDSQDY--NVCELLPVLLPILKE-----------------TLFHHDWEIK  165 (191)
Q Consensus       105 r~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~--~~~~~~l~~L~~l~e-----------------~l~~~~~~~r  165 (191)
                      |..+|.++.-|+   .|+.-+.++..+.+.+.+.|.  ...-..|.+|..++.                 -+.++--.+|
T Consensus       316 RAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          316 KLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             HHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHH
Confidence            999999999999   567788899999999987643  123445556666554                 1234557899


Q ss_pred             HHHHHHHHHHh
Q psy9906         166 ESGILALGAIA  176 (191)
Q Consensus       166 ~~~i~~~~ai~  176 (191)
                      .+.+.++.++.
T Consensus       393 ~AVL~TL~tfL  403 (800)
T 3oc3_A          393 TSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHTTTCC
T ss_pred             HHHHHHHHHHH
Confidence            99988877655

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=88.79  E-value=9.1  Score=32.22  Aligned_cols=134  Identities=13%  Similarity=0.134  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---------------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHh
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNT---------------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNN   73 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~---------------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~   73 (191)
                      .+..++.+|...  .++.++..|--.|.++..               ..+....|..++.   +.+..+|.-|+-.|+|.
T Consensus       284 ~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~---~~~~~v~~~A~~aL~nl  358 (457)
T 1xm9_A          284 AIRTYLNLMGKS--KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ---SGNSDVVRSGASLLSNM  358 (457)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT---CSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhc--CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh---CCCHhHHHHHHHHHHHH
Confidence            455667777664  456777777777666542               1344556677763   46788999999999998


Q ss_pred             hhhhhcCCChhHHHHHHHH----HHHhhCCCC------HHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcC-
Q psy9906          74 VRARFYEFPPGVSEFIKQE----CLSAIGDPS------PLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQ-  138 (191)
Q Consensus        74 i~~~W~~i~~~~k~~ik~~----ll~~l~~~~------~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~-  138 (191)
                      -.      +++.+..|...    |++.|..++      ..+...+..++..|...+....+    .+.++.|.+++.++ 
T Consensus       359 s~------~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~  432 (457)
T 1xm9_A          359 SR------HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSA  432 (457)
T ss_dssp             HT------SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTT
T ss_pred             hc------CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence            65      24555555554    444455432      35666778888888876632111    36778888888777 


Q ss_pred             CccccchhhhHHHHH
Q psy9906         139 DYNVCELLPVLLPIL  153 (191)
Q Consensus       139 ~~~~~~~~l~~L~~l  153 (191)
                      +...+..|..+|..+
T Consensus       433 ~~~i~~~A~~~L~~~  447 (457)
T 1xm9_A          433 SPKAAEAARLLLSDM  447 (457)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHH
Confidence            666666666666433

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=88.15  E-value=11  Score=32.06  Aligned_cols=152  Identities=16%  Similarity=0.013  Sum_probs=96.0

Q ss_pred             cCCCHHHHHHHHHHHHHhhcC-----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTH-----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~-----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      .++|.+++..|-..|..+...           .|....|..++.  .+.+..++..|+-.|.|.....     ++.|..|
T Consensus       253 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl--~s~~~~v~~~A~~aL~nLs~~~-----~~nk~~I  325 (458)
T 3nmz_A          253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL--EVKKESTLKSVLSALWNLSAHC-----TENKADI  325 (458)
T ss_dssp             GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT--TCCSHHHHHHHHHHHHHHHHHC-----HHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHccCC-----HHHHHHH
Confidence            367888999988888776542           245566667653  3456778877777777765421     2333333


Q ss_pred             H------HHHHHhhCCCCH----HHHHHHHHHHHHHHhh--CCCCC-----CchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906          90 K------QECLSAIGDPSP----LIRATVGILITTIASK--GDLKS-----WPELLPTLNDMLDSQDYNVCELLPVLLPI  152 (191)
Q Consensus        90 k------~~ll~~l~~~~~----~ir~~~~~~i~~Ia~~--e~~~~-----Wpell~~L~~~l~~~~~~~~~~~l~~L~~  152 (191)
                      -      ..|++.|.....    .++..++.++..|+.+  ..++.     =.+.+|.|++++.+++...++.+..+|.-
T Consensus       326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n  405 (458)
T 3nmz_A          326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN  405 (458)
T ss_dssp             HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            2      244555555432    4888888899998863  21111     13578899999998877666666666644


Q ss_pred             Hh--------------------hhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         153 LK--------------------ETLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       153 l~--------------------e~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                      +.                    +-+.+.+..+|+.|..++..|+.+.
T Consensus       406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            43                    1233456777888877777777653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=88.05  E-value=8.3  Score=32.96  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHHhhc-----------CCChHHHHHHHHhhhCCCC--hhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906          22 SPDNLIQRAVQHKLEQLNT-----------HPDFNNYLIFVLTKLTSED--EPTRSLSGLILKNNVRARFYEFPPGVSEF   88 (191)
Q Consensus        22 s~d~~~r~~AE~~L~~~~~-----------~~~~~~~L~~il~~~~~~~--~~vRq~A~i~LKn~i~~~W~~i~~~~k~~   88 (191)
                      +++..+++.|-..|.++..           ..|....|..++.. ....  ..++.-|+-.|+|.-.. . .-+++.+..
T Consensus       298 s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~-~~~~~~~~v~~~A~~aL~nLs~~-~-a~~~~~~~~  374 (458)
T 3nmz_A          298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILRNVSSL-I-ATNEDHRQI  374 (458)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSTTHHHHHHHHHHHHHHHH-H-TTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHhc-c-cCCHHHHHH
Confidence            3467788777666655443           35677777788752 2111  14777777777775431 1 123555665


Q ss_pred             HHH-----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC---C-chHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          89 IKQ-----ECLSAIGDPSPLIRATVGILITTIASKGDLKS---W-PELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        89 ik~-----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~---W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                      +++     .|++.|.+.+..++..++.++..++..+....   . -+.+|.|++++.+++...++.+..+|.-+..
T Consensus       375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            553     56777778889999999999999996442111   1 2578899999998888888999888877665

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=86.97  E-value=6.9  Score=30.64  Aligned_cols=69  Identities=20%  Similarity=0.159  Sum_probs=40.3

Q ss_pred             CCChhHHhHHHHHHHHhhhhhhcCCC--hhHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q psy9906          57 SEDEPTRSLSGLILKNNVRARFYEFP--PGVSEFIKQECLSA-IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLND  133 (191)
Q Consensus        57 ~~~~~vRq~A~i~LKn~i~~~W~~i~--~~~k~~ik~~ll~~-l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~  133 (191)
                      +.+..+|.+|...++-     |...+  ..+.+.+- .+++. ..+++..||+.+|..+..+++.+     |+.+..+++
T Consensus       150 d~n~~VRR~Ase~~rp-----W~~~~~~k~dp~~ll-~iL~~L~~D~s~yVrKSVan~LrD~SK~~-----Pd~V~~~~~  218 (240)
T 3l9t_A          150 SSNLHTRRAATEGLRI-----WTNRPYFKENPNEAI-RRIADLKEDVSEYVRKSVGNALRDISKKF-----PDLVKIELK  218 (240)
T ss_dssp             CSSHHHHHHHHHHTCS-----GGGSTTTTTCHHHHH-HHHHTTTTCSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhHH-----HhccchhhcCHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHhhhC-----HHHHHHHHH
Confidence            3455566666555542     44321  12222233 23333 33578999999999999999888     666666655


Q ss_pred             Hhh
Q psy9906         134 MLD  136 (191)
Q Consensus       134 ~l~  136 (191)
                      .-.
T Consensus       219 ~w~  221 (240)
T 3l9t_A          219 NWK  221 (240)
T ss_dssp             TCC
T ss_pred             Hhh
Confidence            443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=86.66  E-value=10  Score=34.75  Aligned_cols=153  Identities=13%  Similarity=0.036  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHHHhhc-----CC-----ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906          22 SPDNLIQRAVQHKLEQLNT-----HP-----DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ   91 (191)
Q Consensus        22 s~d~~~r~~AE~~L~~~~~-----~~-----~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~   91 (191)
                      +.+.++|.-|-..|++.-+     -|     ..-.+++..+...++.+..+|...+..+-..+++.|..-=+    .+=.
T Consensus        69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp----~~l~  144 (963)
T 2x19_B           69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP----CAVA  144 (963)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST----THHH
T ss_pred             CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc----hHHH
Confidence            5688999999988886421     11     23445666665323346788887777777777765521101    1223


Q ss_pred             HHHHhhCC-----CCHHHHHHHHHHHHHHHhhC----C------------CCCCchHHHHHHHHhhcCCcc--ccchhhh
Q psy9906          92 ECLSAIGD-----PSPLIRATVGILITTIASKG----D------------LKSWPELLPTLNDMLDSQDYN--VCELLPV  148 (191)
Q Consensus        92 ~ll~~l~~-----~~~~ir~~~~~~i~~Ia~~e----~------------~~~Wpell~~L~~~l~~~~~~--~~~~~l~  148 (191)
                      .+++.+.+     ++...+..+-.++..+....    .            ...-|.+++.+.+.+++.+..  ....++.
T Consensus       145 ~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~  224 (963)
T 2x19_B          145 DMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLK  224 (963)
T ss_dssp             HHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            45555544     24445555566666555311    1            122355666666666544221  3444555


Q ss_pred             HHHH-----------------HhhhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         149 LLPI-----------------LKETLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       149 ~L~~-----------------l~e~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      |+..                 +.+-+  .+++.|++++.+++.|+.+..
T Consensus       225 ~l~~wi~~~~~~~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~  271 (963)
T 2x19_B          225 CFSSWVQLEVPLQDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPD  271 (963)
T ss_dssp             HHHHHHTSSCCGGGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHcCCCCcccchHHHHHHHHHh--CCchHHHHHHHHHHHHHcccc
Confidence            5521                 11111  367889999999999998643

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.63  E-value=11  Score=32.76  Aligned_cols=72  Identities=17%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             ChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHhhc
Q psy9906          59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW-PELLPTLNDMLDS  137 (191)
Q Consensus        59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W-pell~~L~~~l~~  137 (191)
                      +...+++|+..+-++++.    .+ +-.+.-=+.++.+.-+.+..||.++..-+..+++.    +| +-+...|.|+++.
T Consensus        41 ~~k~K~LaaQ~I~kffk~----FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqt  111 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKH----FP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQT  111 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGG----CG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHhh----Ch-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhc
Confidence            455566665544433332    21 22222223444555555555555555555555544    22 3344455555554


Q ss_pred             CC
Q psy9906         138 QD  139 (191)
Q Consensus       138 ~~  139 (191)
                      .+
T Consensus       112 dd  113 (507)
T 3u0r_A          112 DD  113 (507)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=86.61  E-value=20  Score=33.12  Aligned_cols=116  Identities=11%  Similarity=-0.033  Sum_probs=77.0

Q ss_pred             ChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC--------------CCCCC
Q psy9906          59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG--------------DLKSW  124 (191)
Q Consensus        59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e--------------~~~~W  124 (191)
                      .+-+|..|+-.+-++-.  |  ++++.-..+=..+++.|.+++..||..++.++..++...              .....
T Consensus       471 ~p~vr~~a~~~lg~~~~--~--~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRN--Q--LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (960)
T ss_dssp             CHHHHHHHHHHHHHTGG--G--SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             CceehHHHHHHHHHHHh--h--CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence            67789888887776654  4  355555555567888888888999999999999988741              12346


Q ss_pred             chHHHHHHHHhhcCC-----ccccchhhhHHHHHhh----hc-------------------CC-CcHHHHHHHHHHHHHH
Q psy9906         125 PELLPTLNDMLDSQD-----YNVCELLPVLLPILKE----TL-------------------FH-HDWEIKESGILALGAI  175 (191)
Q Consensus       125 pell~~L~~~l~~~~-----~~~~~~~l~~L~~l~e----~l-------------------~~-~~~~~r~~~i~~~~ai  175 (191)
                      +.+++.|+.+++...     ....+.++.++..+.+    ++                   .+ .+...+...+.++|+|
T Consensus       547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l  626 (960)
T 1wa5_C          547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI  626 (960)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence            788888888887741     1133455555533322    11                   11 2455666677788888


Q ss_pred             hhh
Q psy9906         176 AEV  178 (191)
Q Consensus       176 ~~~  178 (191)
                      +..
T Consensus       627 ~~~  629 (960)
T 1wa5_C          627 LNY  629 (960)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            775

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=86.38  E-value=1.1  Score=42.41  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             HHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhC
Q psy9906          62 TRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS-PLIRATVGILITTIASKG  119 (191)
Q Consensus        62 vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~-~~ir~~~~~~i~~Ia~~e  119 (191)
                      .|..+..++..++-++.-.++++++..|.+.++.+|.++. -.||..++.+++.+.+..
T Consensus       817 ~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~  875 (997)
T 1vsy_5          817 QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW  875 (997)
T ss_dssp             SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence            8888888888888888777889999999999999999999 999999999999999775

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=86.01  E-value=23  Score=33.35  Aligned_cols=166  Identities=10%  Similarity=0.083  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906           7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQ-LNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP   83 (191)
Q Consensus         7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~-~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~   83 (191)
                      ++....+++.|..  +.|+-+|..|--.+-- +...  +..+.-|+.++..  ..+..+|+.|.+-|-.....  .   +
T Consensus       540 ~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g--~---~  610 (963)
T 4ady_A          540 QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLR--D---Y  610 (963)
T ss_dssp             GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSS--S---C
T ss_pred             hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccC--C---H
Confidence            3456777788876  4566788777666653 3332  2356657777753  45667999888877533221  1   1


Q ss_pred             hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-------
Q psy9906          84 GVSEFIKQECLSAIG-DPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE-------  155 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-------  155 (191)
                      +   .+ ..+++.|. ..++.+|..++.+++.+....+  . ++.+..|..+..+++...+.+|...|..|--       
T Consensus       611 e---~v-~rlv~~L~~~~d~~VR~gAalALGli~aGn~--~-~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~  683 (963)
T 4ady_A          611 T---TV-PRIVQLLSKSHNAHVRCGTAFALGIACAGKG--L-QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN  683 (963)
T ss_dssp             S---SH-HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--C-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred             H---HH-HHHHHHHHhcCCHHHHHHHHHHHHHhccCCC--c-HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence            1   11 23455444 4788999999998888875443  2 7788888888777777777777777655541       


Q ss_pred             ------------hc--CCCcHHHHHHHHHHHHHHhhhhhhhchhhcc
Q psy9906         156 ------------TL--FHHDWEIKESGILALGAIAEVNKSIGLKLLC  188 (191)
Q Consensus       156 ------------~l--~~~~~~~r~~~i~~~~ai~~~~~~~~~~~~~  188 (191)
                                  .+  .+.|...|..+..|.|-|--|..-..++...
T Consensus       684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~  730 (963)
T 4ady_A          684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLEN  730 (963)
T ss_dssp             TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBC
T ss_pred             hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence                        11  1235667777777777777776665555543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=85.66  E-value=14  Score=30.34  Aligned_cols=152  Identities=16%  Similarity=0.012  Sum_probs=97.3

Q ss_pred             cCCCHHHHHHHHHHHHHhhcC-----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTH-----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~-----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      .++|.+++.+|-..|..+...           .|....|..++.  .+.+..++..|+-.|.|.-.     ..++.|..|
T Consensus       137 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~--~~~~~~~~~~A~~aL~nLs~-----~~~~nk~~i  209 (354)
T 3nmw_A          137 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL--EVKKESTLKSVLSALWNLSA-----HCTENKADI  209 (354)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHT-----TCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHc-----cChhhhHHH
Confidence            467889999988888776542           245666777653  24466777777766766543     123444444


Q ss_pred             H------HHHHHhhCCCCH----HHHHHHHHHHHHHHhh--CCCCC-----CchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906          90 K------QECLSAIGDPSP----LIRATVGILITTIASK--GDLKS-----WPELLPTLNDMLDSQDYNVCELLPVLLPI  152 (191)
Q Consensus        90 k------~~ll~~l~~~~~----~ir~~~~~~i~~Ia~~--e~~~~-----Wpell~~L~~~l~~~~~~~~~~~l~~L~~  152 (191)
                      .      ..|++.|...+.    .++..++.++..++.+  ..++.     =.+.+|.|++++.+++...++.+..+|.-
T Consensus       210 ~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n  289 (354)
T 3nmw_A          210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN  289 (354)
T ss_dssp             HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            3      244555555432    5888888899988862  11110     13578999999998877666666666644


Q ss_pred             Hh--------------------hhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         153 LK--------------------ETLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       153 l~--------------------e~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                      +.                    +-+.+.+..+|+.|..++..+..+.
T Consensus       290 La~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            44                    2234457788888888888888764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=84.99  E-value=20  Score=31.68  Aligned_cols=122  Identities=13%  Similarity=0.050  Sum_probs=74.2

Q ss_pred             cCCCHHHHHHHHHHHHHhhcC-----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTH-----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI   89 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~-----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i   89 (191)
                      .+++.+++.+|-..|.++...           .|.+..|..++.  .+.+..++..|+-.|.|.-.      .++.|..|
T Consensus       100 ~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~--s~~~~~~~e~aa~aL~nLS~------~~~~k~~I  171 (584)
T 3l6x_A          100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR--KARDMDLTEVITGTLWNLSS------HDSIKMEI  171 (584)
T ss_dssp             GCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHH--HCCSHHHHHHHHHHHHHHTT------SGGGHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHc--CCCCHHHHHHHHHHHHHHhC------CchhhHHH
Confidence            467899999999999887752           366778888885  23466777777767766543      23444433


Q ss_pred             HH----HHHHhhC------------------CCCHHHHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHhhc-----
Q psy9906          90 KQ----ECLSAIG------------------DPSPLIRATVGILITTIASKGDL-----KSWPELLPTLNDMLDS-----  137 (191)
Q Consensus        90 k~----~ll~~l~------------------~~~~~ir~~~~~~i~~Ia~~e~~-----~~Wpell~~L~~~l~~-----  137 (191)
                      -.    .|++.+.                  ..+..++..++.++..++.....     .+=+.+++.|+.++++     
T Consensus       172 ~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~  251 (584)
T 3l6x_A          172 VDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK  251 (584)
T ss_dssp             HHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhccc
Confidence            22    2233220                  12467888888888888865411     1124566677777653     


Q ss_pred             -CCccccchhhhHH
Q psy9906         138 -QDYNVCELLPVLL  150 (191)
Q Consensus       138 -~~~~~~~~~l~~L  150 (191)
                       .+....+.++-+|
T Consensus       252 ~~~~~~~enav~aL  265 (584)
T 3l6x_A          252 DSDSKLVENCVCLL  265 (584)
T ss_dssp             CCSCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHH
Confidence             2334445455444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=83.32  E-value=21  Score=33.66  Aligned_cols=163  Identities=10%  Similarity=0.143  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----Ch-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906           9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP----DF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP   83 (191)
Q Consensus         9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~----~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~   83 (191)
                      ....|-+++.....++...++.|-..+-.+-...    +. ...+-.+.....+-...  -.|.+.+..... +...- +
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~-~~~~~-~   87 (986)
T 2iw3_A           12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIAN-QSNLS-P   87 (986)
T ss_dssp             HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTC-TTTCC-T
T ss_pred             hHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHH-hcCCC-C
Confidence            3444445555555555666777776666654311    11 22222222111111111  444444444332 22221 1


Q ss_pred             hHHHHH---HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh----
Q psy9906          84 GVSEFI---KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE----  155 (191)
Q Consensus        84 ~~k~~i---k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e----  155 (191)
                      ..-.++   -..++.++.+-...||+++..++..|++.-.|..-+.++|.|+..+.+. .|..+.+++.++..+.+    
T Consensus        88 ~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           88 SVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             TTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             CcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            122333   3566667777788999999999999999998877789999999999766 68888888887755543    


Q ss_pred             ---------------hcCCCcHHHHHHHHHHHHHH
Q psy9906         156 ---------------TLFHHDWEIKESGILALGAI  175 (191)
Q Consensus       156 ---------------~l~~~~~~~r~~~i~~~~ai  175 (191)
                                     .+.+.-.++..+|..++.++
T Consensus       168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~  202 (986)
T 2iw3_A          168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA  202 (986)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence                           45666677888766655543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=82.43  E-value=5.4  Score=36.81  Aligned_cols=70  Identities=9%  Similarity=0.027  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-----CC-----ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh
Q psy9906           7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT-----HP-----DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA   76 (191)
Q Consensus         7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-----~~-----~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~   76 (191)
                      |+...-+.++|..  +.|.++|.-|-..|++.-+     -|     ..-.+++..+....+.+..+|...+..+-..+++
T Consensus        38 p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~  115 (971)
T 2x1g_F           38 PQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVH  115 (971)
T ss_dssp             THHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            3444445555543  5688999999888886421     11     2345566666543334678888888777777777


Q ss_pred             hh
Q psy9906          77 RF   78 (191)
Q Consensus        77 ~W   78 (191)
                      .|
T Consensus       116 ~~  117 (971)
T 2x1g_F          116 ML  117 (971)
T ss_dssp             TT
T ss_pred             cc
Confidence            44

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=80.24  E-value=3.6  Score=36.88  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=45.1

Q ss_pred             CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH-----hhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906          56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLS-----AIGDPSPLIRATVGILITTIASKGD  120 (191)
Q Consensus        56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~-----~l~~~~~~ir~~~~~~i~~Ia~~e~  120 (191)
                      ++.++..|..|+..|.|.+..     +...+..+++.++.     +|.+++..||..++.++..++..++
T Consensus        44 ~S~~~~~r~~A~~al~~l~~~-----~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           44 KSPDAKSRTTAAGAIANIVQD-----AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             SSSCCSHHHHHHHHHHHHTTS-----HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHcC-----cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            567889999999999998842     23444455554443     3556899999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-42
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	1e-22
d1wa5c_	959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	5e-22
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-19
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.002
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	1e-18
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.004

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (370), Expect = 9e-42
 Identities = 112/156 (71%), Positives = 126/156 (80%)

Query: 3   WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
           W+P E+GL QILQLLKESQSPD  IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 3   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 62

Query: 63  RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
           RSLSGLILKNNV+A F  FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 63  RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 122

Query: 123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLF 158
           +WP+LLP L  +LDS+DYN CE     L  + E   
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 158

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (227), Expect = 1e-22
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
           +++ +L+++ SPD L   A Q  LE+      P F   L  VL       +  R  +GL 
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 60

Query: 70  LKNNVRA-----------RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
           +KN++ +           R+          +K   L  +G  +    +    +     ++
Sbjct: 61  IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120

Query: 119 GDLKSWPELLPTLNDMLDSQDYNV 142
             +  WPEL+P L   + + +   
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTE 144

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.4 bits (223), Expect = 5e-22
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 10/151 (6%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
            + + L ES        +  +  L QL T   F   L+ V+   T+    TR    L  K
Sbjct: 6   TVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFK 62

Query: 72  NNVRARFYE------FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP 125
           N ++ ++ +       P    E IK+E +  +      ++  +G  I++IA       WP
Sbjct: 63  NFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP 122

Query: 126 ELLPTLNDMLDSQDYNVCE-LLPVLLPILKE 155
            LL  L   L + D    + +L V   I K 
Sbjct: 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 8e-19
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 12  QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
           +++ +L+++ SPD L   A Q  LE+      P F   L  VL       +  R  +GL 
Sbjct: 1   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 59

Query: 70  LKNNVRARFYE-----------FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
           +KN++ ++  +                   +K   L  +G  +    +    +     ++
Sbjct: 60  IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 119

Query: 119 GDLKSWPELLPTLNDMLDS--QDYNVCELLPVLLPILKETLFHHDWEIKESGIL 170
             +  WPEL+P L   + +     ++ E     +  + + +     + K + IL
Sbjct: 120 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEIL 173

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 54/231 (23%)

Query: 1   MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLT---- 56
                  E L  I+Q +++ +  +N+   A    L  L       +        +     
Sbjct: 164 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 223

Query: 57  ---SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILIT 113
                D   R  +   L   +   +      +   +    + A+      +        +
Sbjct: 224 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 283

Query: 114 TIASKGD------------------------LKSWPELLPTLNDMLDSQDYNVC------ 143
            +  +                            +   L+P L   L  QD N        
Sbjct: 284 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 343

Query: 144 -----------------ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
                            +++P +LP +KE + + DW  +++ ++A G I E
Sbjct: 344 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 394

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.0 bits (198), Expect = 1e-18
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 17/144 (11%)

Query: 12  QILQLLKES-QSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGL 68
           +  QLL+ S  SPD  I+   + +L++L  +    F      VL    +     R L+ L
Sbjct: 5   EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAAL 63

Query: 69  ILKNNVRAR------------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116
            LKN + ++              +  P     IK   L+A+    P I      LI  IA
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA 123

Query: 117 SK-GDLKSWPELLPTLNDMLDSQD 139
                  +WPEL+  + D   ++ 
Sbjct: 124 DIELPHGAWPELMKIMVDNTGAEQ 147

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 94  LSAIGDPSPLIRATVGILITTIASK-GDLKSWPELLPTLNDMLDSQDYNVCEL------- 145
           +  + +    +R      ++TIA   G  ++  ELLP L D +  +D  +  L       
Sbjct: 16  IDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTF 75

Query: 146 ---------LPVLLPILKETLFHHDWEIKESGILALGAIAE 177
                    +  LLP L+      +  +++  + +L AI+ 
Sbjct: 76  TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISH 116

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 16/112 (14%), Positives = 40/112 (35%)

Query: 51  VLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGI 110
           +L K+TS D+  R ++   L   ++    +        + +  L  + D +  ++     
Sbjct: 8   LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67

Query: 111 LITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDW 162
            +  + SK        ++ TL   + S    + ++  + L  +   L     
Sbjct: 68  CLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 32/187 (17%), Positives = 58/187 (31%), Gaps = 17/187 (9%)

Query: 16   LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75
            +L+   SP   ++ A  + L  ++   +   YL FVL ++TS+ +    L    LK  + 
Sbjct: 858  ILEAFSSPSEEVKSAASYALGSISVG-NLPEYLPFVLQEITSQPKRQYLLLH-SLKEIIS 915

Query: 76   ARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLND-- 133
            +          E I    L          R  V   +  +         P L   L    
Sbjct: 916  SASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGS 975

Query: 134  -------------MLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNK 180
                          +      +  LL   +    +TL   D  ++   ++   + A    
Sbjct: 976  SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1035

Query: 181  SIGLKLL 187
            S+   LL
Sbjct: 1036 SLIRDLL 1042

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.94
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.93
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.9
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.59
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.97
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.83
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.69
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.53
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.41
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.39
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.35
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.93
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.73
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.5
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.37
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.28
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.23
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.08
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.74
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	95.7
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.34
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.26
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.26
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.65
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	92.19
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	89.96
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	89.06

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.5e-26  Score=210.07  Aligned_cols=149  Identities=22%  Similarity=0.310  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC------C
Q psy9906           8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE------F   81 (191)
Q Consensus         8 ~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~------i   81 (191)
                      .|++++.++|.++++|+  +||+||++|++++++|||..+|++++. +++.+..+|++|+++|||.|+++|..      +
T Consensus         2 ~d~~~l~~ll~~s~~~~--~~k~Ae~~L~~~~~~p~f~~~L~~i~~-~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i   78 (959)
T d1wa5c_           2 SDLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNHLL   78 (959)
T ss_dssp             CHHHHHHHHHHHTTSGG--GHHHHHHHHHHHHTSTTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred             CcHHHHHHHHHHCCChH--HHHHHHHHHHHHHcCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            47899999999988775  899999999999999999999999997 46678899999999999999999974      8


Q ss_pred             ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906          82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH  159 (191)
Q Consensus        82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~  159 (191)
                      ++++|..||+.++++|.++++.+|++++.+++.|+++|||++||++++.|.+.++++|+...++++.+|..+++.+..
T Consensus        79 ~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~  156 (959)
T d1wa5c_          79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP  156 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred             CHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998999999999999999999999999999999999999999999999999999999886643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-29  Score=229.71  Aligned_cols=156  Identities=72%  Similarity=1.095  Sum_probs=147.8

Q ss_pred             CCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906           1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE   80 (191)
Q Consensus         1 ~~~~p~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~   80 (191)
                      ..|+|+++.+++|.++|++++|||+++|++||++|++++..|+|..+|..++...++.+..+|++|+++|||.|.++|..
T Consensus         1 ~~~~p~~~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~   80 (888)
T d1qbkb_           1 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN   80 (888)
T ss_dssp             CCSHHHHTTHHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTC
T ss_pred             CCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            37999999999999999999999999999999999999989999999999987545667789999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906          81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET  156 (191)
Q Consensus        81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~  156 (191)
                      ++++.|+.||+.++++|.++++.+|++++.+|+.|++.++++.||+++|.|.+.+.+++++.+++++.+|..++|+
T Consensus        81 ~~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~  156 (888)
T d1qbkb_          81 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED  156 (888)
T ss_dssp             STTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGG
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988874

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.7e-24  Score=188.77  Aligned_cols=167  Identities=22%  Similarity=0.282  Sum_probs=142.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-----------h
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-----------F   78 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-----------W   78 (191)
                      +|.++|.+++|||+++|++||++|++++++  |+|..+|+.++. +.+.+.++|++|+++|||.+.++           |
T Consensus         2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~-~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~   80 (876)
T d1qgra_           2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   80 (876)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhccccchhhhhhccc
Confidence            689999999999999999999999999875  899999999996 46678899999999999999755           5


Q ss_pred             cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCC--ccccchhhhHHHHHhh
Q psy9906          79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQD--YNVCELLPVLLPILKE  155 (191)
Q Consensus        79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~--~~~~~~~l~~L~~l~e  155 (191)
                      ..++++.|+.||+.+++++.+++. ++++++.+++.|++.|+| +.||+++|.|.+.+.+++  ...+++++.+|..+++
T Consensus        81 ~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~  159 (876)
T d1qgra_          81 LAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  159 (876)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            579999999999999999987654 567799999999999987 789999999999998764  4568899999988876


Q ss_pred             hcC----------------------CCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 TLF----------------------HHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 ~l~----------------------~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      ++.                      +++..+|.+++.+++...+...
T Consensus       160 ~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            321                      2346788888888877665544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2e-23  Score=185.21  Aligned_cols=170  Identities=25%  Similarity=0.274  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc-------
Q psy9906          10 LIQILQLLKES-QSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY-------   79 (191)
Q Consensus        10 ~~~l~~lL~~~-~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~-------   79 (191)
                      ..++.++|.++ +|||+++|++||++|+++.++  |+|...|++++. +.+.+..+|++|+++|||.+.++|.       
T Consensus         3 ~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~-~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~   81 (861)
T d2bpta1           3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLI-DENTKLEGRILAALTLKNELVSKDSVKTQQFA   81 (861)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhhcccchhhhhHH
Confidence            57899999886 799999999999999999874  789999999996 4667889999999999999987764       


Q ss_pred             -----CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHhhcCC-ccccchhhhHHHH
Q psy9906          80 -----EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK-SWPELLPTLNDMLDSQD-YNVCELLPVLLPI  152 (191)
Q Consensus        80 -----~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-~Wpell~~L~~~l~~~~-~~~~~~~l~~L~~  152 (191)
                           .++++.|+.||+.+++++.++++.+|++++.+++.|++.|+|. .||++++.|++.+.+++ ...+++++.+|..
T Consensus        82 ~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~  161 (861)
T d2bpta1          82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY  161 (861)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred             hhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                 4899999999999999999999999999999999999999885 89999999999998764 4567899999998


Q ss_pred             HhhhcC------------------------CCcHHHHHHHHHHHHHHhhhhh
Q psy9906         153 LKETLF------------------------HHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       153 l~e~l~------------------------~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      +++.+.                        +.+..+|..++.+++..+....
T Consensus       162 i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~  213 (861)
T d2bpta1         162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHh
Confidence            886431                        1346788888888888665443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.5e-19  Score=146.77  Aligned_cols=167  Identities=22%  Similarity=0.278  Sum_probs=137.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-----------h
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-----------F   78 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-----------W   78 (191)
                      +|.++|.+++|||+++|++||+.|+++..+  |+|...|+.++. +++.+..+|++|+++|||.+..+           |
T Consensus         1 el~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~-~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~   79 (458)
T d1ibrb_           1 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   79 (458)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhh
Confidence            478999999999999999999999999874  789999999986 45668899999999999999754           6


Q ss_pred             cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcC--CccccchhhhHHHHHhh
Q psy9906          79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQ--DYNVCELLPVLLPILKE  155 (191)
Q Consensus        79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~--~~~~~~~~l~~L~~l~e  155 (191)
                      ..++++.|..+|+.+++.+.+++..+ +.++.+++.++..++| ..||++++.+++.+.++  ++..+++++.++..+++
T Consensus        80 ~~l~~~~~~~i~~~ll~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~  158 (458)
T d1ibrb_          80 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  158 (458)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHhccCCCcHHH-HHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence            67999999999999999998876544 5678899999999855 78999999999999875  34557788888877765


Q ss_pred             hc--------------------C--CCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 TL--------------------F--HHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 ~l--------------------~--~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      ..                    .  +.+..+|..++.+++.+.+...
T Consensus       159 ~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         159 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             hccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            21                    1  2357889999988888766443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.8e-07  Score=77.52  Aligned_cols=168  Identities=10%  Similarity=0.137  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHhhh-CCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906           9 GLIQILQLLKESQS-PDNLIQRAVQHKLEQLNTHPD---FNNYLIFVLTKL-TSEDEPTRSLSGLILKNNVRARFYEFPP   83 (191)
Q Consensus         9 ~~~~l~~lL~~~~s-~d~~~r~~AE~~L~~~~~~~~---~~~~L~~il~~~-~~~~~~vRq~A~i~LKn~i~~~W~~i~~   83 (191)
                      ....|+..|....+ +|+.+|.+|...|..+....+   +...+..++... .+.....|..|+.++...    |...++
T Consensus        84 ~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~----~~~~~~  159 (588)
T d1b3ua_          84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC----YPRVSS  159 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHH----TTTSCH
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH----HHHhhH
Confidence            34445555555444 467888888888887765322   222233222211 234455676666555443    455678


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-------
Q psy9906          84 GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE-------  155 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-------  155 (191)
                      ..+..+...+.+.+.+.++.+|..++.++..+++.-. +..|++++|.+.++++++++..+..++.++..+.+       
T Consensus       160 ~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~  239 (588)
T d1b3ua_         160 AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL  239 (588)
T ss_dssp             HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHH
Confidence            8888899888888999999999999999999999863 35588999999999998888888888777754432       


Q ss_pred             ----------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 ----------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 ----------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                                -+.+.+|.+|.+++.++|.+++...
T Consensus       240 ~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~  274 (588)
T d1b3ua_         240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG  274 (588)
T ss_dssp             HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh
Confidence                      2346789999999999999876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.4e-05  Score=70.13  Aligned_cols=129  Identities=13%  Similarity=0.092  Sum_probs=101.8

Q ss_pred             HHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHH
Q psy9906          49 IFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELL  128 (191)
Q Consensus        49 ~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell  128 (191)
                      ..++...++.|+.+|.+|.--|.+.+...+..++++.-..+-+.++.+|.++++.||+.+..|++.++.+-.+..++.++
T Consensus         6 ~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~   85 (1207)
T d1u6gc_           6 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV   85 (1207)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHH
Confidence            34444456788899999988888888877777777666668889999999999999999999999999988777888999


Q ss_pred             HHHHHHhhcCCccccchhhhHHHHHhhhc--------------------------CCCcHHHHHHHHHHHHHHhh
Q psy9906         129 PTLNDMLDSQDYNVCELLPVLLPILKETL--------------------------FHHDWEIKESGILALGAIAE  177 (191)
Q Consensus       129 ~~L~~~l~~~~~~~~~~~l~~L~~l~e~l--------------------------~~~~~~~r~~~i~~~~ai~~  177 (191)
                      +.|...+.+++...++.+..+|+.+...+                          ...++.+|..++.+++.++.
T Consensus        86 ~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          86 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999888877777777777776554432                          12357788888887777654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.00072  Score=61.10  Aligned_cols=164  Identities=17%  Similarity=0.134  Sum_probs=110.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC------CC----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH------PD----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEF   81 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~------~~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i   81 (191)
                      ++.++|+...+||++.|-.|...|.+.-+.      ++    ....|+..+   +..+..||..|.-.|...+.+    +
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L---~D~~~~Vq~~A~k~l~~l~~~----~   76 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL---EDKNGEVQNLAVKCLGPLVSK----V   76 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHHHTT----S
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHh----C
Confidence            577899999999999999999877764331      12    244444444   456788999999888887653    5


Q ss_pred             ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC---------CchHHHHHHHHhhcC-CccccchhhhHHH
Q psy9906          82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS---------WPELLPTLNDMLDSQ-DYNVCELLPVLLP  151 (191)
Q Consensus        82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~---------Wpell~~L~~~l~~~-~~~~~~~~l~~L~  151 (191)
                      +++.-..+.+.|+..+.+.....|...+.++..+...-++..         ++.+++.+...+.+. +...+..++.+|.
T Consensus        77 ~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          77 KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             cHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            567777888899998888888888888888888876553211         244455555555443 3333444444442


Q ss_pred             -------------------HHhhhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q psy9906         152 -------------------ILKETLFHHDWEIKESGILALGAIAEVNKSI  182 (191)
Q Consensus       152 -------------------~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~  182 (191)
                                         .+...+.++++.+|..|+.+++.++.+....
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~  206 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI  206 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH
Confidence                               2333456678999999999999988776543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00071  Score=50.70  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=78.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHH
Q psy9906          15 QLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECL   94 (191)
Q Consensus        15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll   94 (191)
                      +++....++|+.+|..|-..|..+.. ++....|..++.   +.+..+|..|+..|.+.-.      .......+-..++
T Consensus        23 ~L~~~L~d~~~~vR~~A~~~L~~~~~-~~~~~~l~~~l~---d~~~~vr~~a~~aL~~l~~------~~~~~~~~~~~l~   92 (276)
T d1oyza_          23 ELFRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKI------CKKCEDNVFNILN   92 (276)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCC------CTTTHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhCC-HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhcc------ccccccchHHHHH
Confidence            34555567899999999999998865 667788888774   5678899999988865421      1112222333344


Q ss_pred             H-hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhh
Q psy9906          95 S-AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPV  148 (191)
Q Consensus        95 ~-~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~  148 (191)
                      . .+.++++.+|..+..++..+...... .=|.+++.+...+.+.++..+..+..
T Consensus        93 ~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~a~~  146 (276)
T d1oyza_          93 NMALNDKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITAFDKSTNVRRATAF  146 (276)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHhcCCChhHHHHHHHHHHHHccccch-hhHHHHHHHHHHhcCcchHHHHHHHH
Confidence            4 34567888888888888887766521 11445555555555554444333333

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.0008  Score=56.30  Aligned_cols=159  Identities=19%  Similarity=0.121  Sum_probs=102.3

Q ss_pred             HHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC--CC-----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906          12 QILQLLKES-QSPDNLIQRAVQHKLEQLNTH--PD-----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP   83 (191)
Q Consensus        12 ~l~~lL~~~-~s~d~~~r~~AE~~L~~~~~~--~~-----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~   83 (191)
                      .+...+... .+++..+|+.+-+.+..+...  ++     +...+...+   ......+|..|+-.|...+...=   .+
T Consensus       402 ~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~D~~~~VR~~A~~~L~~l~~~~~---~~  475 (588)
T d1b3ua_         402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHVYAIREAATSNLKKLVEKFG---KE  475 (588)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG---GCSSHHHHHHHHHHHHHHHHHHC---HH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhc---cCCchhHHHHHHHHHHHHHHHhC---cH
Confidence            344333333 456777888887777765431  11     223333333   34567889888888887776421   01


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHhhcCCccccchhhhHHHHHhhh------
Q psy9906          84 GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK-SWPELLPTLNDMLDSQDYNVCELLPVLLPILKET------  156 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~------  156 (191)
                      ..+..+-..+.+.+.+++...|..+..++..++..-+++ ..++++|.+.+++.++.++.+.++..+|..+...      
T Consensus       476 ~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~  555 (588)
T d1b3ua_         476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL  555 (588)
T ss_dssp             HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhH
Confidence            233445556666667788888888888888887654322 2357888888888888888888888888666542      


Q ss_pred             -----------cCCCcHHHHHHHHHHHHHHh
Q psy9906         157 -----------LFHHDWEIKESGILALGAIA  176 (191)
Q Consensus       157 -----------l~~~~~~~r~~~i~~~~ai~  176 (191)
                                 ..++|.++|..|-.|+..++
T Consensus       556 ~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence                       23567888888877777665

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00073  Score=51.47  Aligned_cols=150  Identities=13%  Similarity=0.079  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCChH---------HHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH-HHH---
Q psy9906          24 DNLIQRAVQHKLEQLNTHPDFN---------NYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE-FIK---   90 (191)
Q Consensus        24 d~~~r~~AE~~L~~~~~~~~~~---------~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~-~ik---   90 (191)
                      |.+.|..|=..|..+..+.+..         ..++..+  .++.+..+|..|+-.|.+.....     +..+. .++   
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~l--l~s~~~~vr~~A~~~L~~l~~~~-----~~~~~~~~~~~~  102 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY--LEAGAAGLRWRAAQLIGTCSQNV-----AAIQEQVLGLGA  102 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTT--TTCSSHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCc
Confidence            5667777777777776543322         2233222  24678899999999999887632     23232 222   


Q ss_pred             -HHHHHhhC-CCCHHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcCCccccchhhhHHHHHhh---------
Q psy9906          91 -QECLSAIG-DPSPLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQDYNVCELLPVLLPILKE---------  155 (191)
Q Consensus        91 -~~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------  155 (191)
                       ..++..+. .+++.+|..++.+++.+++...+..+    .+.++.|..++.+++...+..++.+|..++.         
T Consensus       103 i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  182 (264)
T d1xqra1         103 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL  182 (264)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHH
Confidence             35556564 46788999999999999988754332    3468888899988887766666666644432         


Q ss_pred             -----------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 -----------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 -----------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                                 -+.+++..+|+.++.+++.++++..
T Consensus       183 ~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~  218 (264)
T d1xqra1         183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  218 (264)
T ss_dssp             HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCH
Confidence                       2345678899999999998886543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0054  Score=48.41  Aligned_cols=165  Identities=13%  Similarity=0.134  Sum_probs=106.5

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHhhc-CC--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-----
Q psy9906          13 ILQLLKES-QSPDNLIQRAVQHKLEQLNT-HP--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-----   77 (191)
Q Consensus        13 l~~lL~~~-~s~d~~~r~~AE~~L~~~~~-~~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-----   77 (191)
                      +.+++... .++|.++|+.+-..|.++.. .|        +....++....  .+.+..+|..|.-.+.......     
T Consensus       217 ~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~i~~~~~~~~~  294 (458)
T d1ibrb_         217 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM--KSDIDEVALQGIEFWSNVCDEEMDLAI  294 (458)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH--HCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444 45688999998888887542 12        11222222221  3556677777665554443210     


Q ss_pred             -----------hcCCC----hhHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh
Q psy9906          78 -----------FYEFP----PGVSEFIKQECLSAIGD-------PSPLIRATVGILITTIASKGDLKSWPELLPTLNDML  135 (191)
Q Consensus        78 -----------W~~i~----~~~k~~ik~~ll~~l~~-------~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l  135 (191)
                                 .....    ......+-..+.+.+..       .+..+|..++.++..++..-+...+|.+++.+.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l  374 (458)
T d1ibrb_         295 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI  374 (458)
T ss_dssp             HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT
T ss_pred             hhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHh
Confidence                       00111    12222333444444432       235688999999999998887777899999999999


Q ss_pred             hcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         136 DSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       136 ~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                      +++++..+++++.+|..+.+                    .+.+++..+|.+|+.++|.|++..
T Consensus       375 ~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         375 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  438 (458)
T ss_dssp             TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999998866653                    223467889999999999998765

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0058  Score=46.20  Aligned_cols=129  Identities=10%  Similarity=0.077  Sum_probs=94.4

Q ss_pred             cCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-
Q psy9906          21 QSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-   89 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-   89 (191)
                      .++|.++|.+|=..|..+...          .+....|+.++.  +..+..+|..|+..|.+.+...-    +..+..+ 
T Consensus        69 ~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~~v~~~a~~aL~~l~~~~~----~~~~~~~~  142 (264)
T d1xqra1          69 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD--RDACDTVRVKALFAISCLVREQE----AGLLQFLR  142 (264)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHTTCH----HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh--cCCCHHHHHHHHHHHHHHhccch----hhHHHHHH
Confidence            367999999999999887752          244566777774  34577899988888888775321    1111222 


Q ss_pred             ---HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906          90 ---KQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLLPILKE  155 (191)
Q Consensus        90 ---k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e  155 (191)
                         -..+++.+.+++..++..++.++..++.......    ..+.+|.|+.++.++++..++.++.+|..+.+
T Consensus       143 ~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         143 LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence               2466777778899999999999999987763211    23578999999999999999999999977664

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.024  Score=46.11  Aligned_cols=149  Identities=16%  Similarity=0.213  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH---
Q psy9906          24 DNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK---   90 (191)
Q Consensus        24 d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik---   90 (191)
                      |...+..|-..|..+...          .|....+..++.   +.+..+|..|+-.|.|....     +++.|..+.   
T Consensus       133 ~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~---s~~~~i~~~a~~~L~nia~~-----~~~~r~~l~~~~  204 (503)
T d1wa5b_         133 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGD-----STDYRDYVLQCN  204 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhc---CCChhHHHHHHHHHHHHhhh-----hHHHHHHHHhhc
Confidence            567788887777766531          355666777764   35778999999999886642     234444433   


Q ss_pred             --HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh---------
Q psy9906          91 --QECLSAIGDPSPLIRATVGILITTIASKGDL-KSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE---------  155 (191)
Q Consensus        91 --~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------  155 (191)
                        ..++..+.+.+..+++.++.++..+++...+ ...   .+++|.+...+.++|+.....++.+|.++.+         
T Consensus       205 ~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~  284 (503)
T d1wa5b_         205 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV  284 (503)
T ss_dssp             CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             ccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhh
Confidence              3456666677888999999999999987532 222   3588999999998888777777777766653         


Q ss_pred             -----------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         156 -----------TLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       156 -----------~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                                 -+.+.+..++..++.++|.|+.+.+
T Consensus       285 ~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         285 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             hhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence                       2345678899999999999886644

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.021  Score=45.06  Aligned_cols=163  Identities=16%  Similarity=0.128  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhh
Q psy9906          10 LIQILQLLKES-QSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF   78 (191)
Q Consensus        10 ~~~l~~lL~~~-~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W   78 (191)
                      ...+...|... .++|.+.+..|-..|..+...          ++....|..++.   +.+..++..|...|.+....  
T Consensus       186 ~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~---~~~~~~~~~al~~l~~l~~~--  260 (434)
T d1q1sc_         186 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTG--  260 (434)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTS--
T ss_pred             hhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccc---cchhhhhhchhhhhhhHHhh--
Confidence            44455555544 456888888887777765432          345566666653   46788999998888877642  


Q ss_pred             cCCChhHH-HHHHH----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCC--CCC--chHHHHHHHHhhcCCccccchhhhH
Q psy9906          79 YEFPPGVS-EFIKQ----ECLSAIGDPSPLIRATVGILITTIASKGDL--KSW--PELLPTLNDMLDSQDYNVCELLPVL  149 (191)
Q Consensus        79 ~~i~~~~k-~~ik~----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~--~~W--pell~~L~~~l~~~~~~~~~~~l~~  149 (191)
                         +++.+ ..++.    .+++.+.++++.++..++.++..++.....  ..+  .++++.+++.+.+++...+..+..+
T Consensus       261 ---~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~  337 (434)
T d1q1sc_         261 ---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA  337 (434)
T ss_dssp             ---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             ---hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHH
Confidence               12222 22332    355566678889999999999999875411  111  3477888888888887766666666


Q ss_pred             HHHHh---------------------hhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         150 LPILK---------------------ETLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       150 L~~l~---------------------e~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      +..+.                     +-+...+.+.+..++.++..|.+..+
T Consensus       338 l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         338 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            53332                     22344578888888888887766443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.37  E-value=0.0037  Score=41.01  Aligned_cols=97  Identities=12%  Similarity=0.022  Sum_probs=69.8

Q ss_pred             CChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhc
Q psy9906          58 EDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDS  137 (191)
Q Consensus        58 ~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~  137 (191)
                      .+..||..|.-.|.+        +.++.   + ..|++.|.++++.+|..++.+++.+.       =++.++.|..++.+
T Consensus         4 ~~~~VR~~A~~aL~~--------~~~~~---~-~~L~~~l~d~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~d   64 (111)
T d1te4a_           4 ENKWVRRDVSTALSR--------MGDEA---F-EPLLESLSNEDWRIRGAAAWIIGNFQ-------DERAVEPLIKLLED   64 (111)
T ss_dssp             SCCCSSSSCCSSTTS--------CSSTT---H-HHHHHGGGCSCHHHHHHHHHHHGGGC-------SHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH--------hCHHH---H-HHHHHHHcCCCHHHHHHHHHHHHhcc-------hhhhHHHHHhhhcc
Confidence            455677766665543        22222   2 35778888999999998888876543       25688999999999


Q ss_pred             CCccccchhhhHHHHHhh---------hcCCCcHHHHHHHHHHHH
Q psy9906         138 QDYNVCELLPVLLPILKE---------TLFHHDWEIKESGILALG  173 (191)
Q Consensus       138 ~~~~~~~~~l~~L~~l~e---------~l~~~~~~~r~~~i~~~~  173 (191)
                      +++..+..+...|..+..         -+.++++.+|.+|+.++.
T Consensus        65 ~~~~VR~~a~~aL~~i~~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             chhHHHHHHHHHHHHhCccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999888888888866643         346678999999887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.12  Score=37.73  Aligned_cols=96  Identities=14%  Similarity=0.069  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906          10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPD----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV   85 (191)
Q Consensus        10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~   85 (191)
                      +..+.+++   .++|+.+|..|-..|..+.....    ....+...+.  ++.+..+|..|.-.|.+.....     ...
T Consensus        52 ~~~l~~~l---~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~l--~d~~~~vr~~a~~aL~~~~~~~-----~~~  121 (276)
T d1oyza_          52 VRLAIEFC---SDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL--NDKSACVRATAIESTAQRCKKN-----PIY  121 (276)
T ss_dssp             HHHHHHHH---TCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHC-----GGG
T ss_pred             HHHHHHHH---cCCCHHHHHHHHHHHHHhccccccccchHHHHHHHHh--cCCChhHHHHHHHHHHHHcccc-----chh
Confidence            34444443   47899999999999988865322    2333444443  4568889999998887765432     222


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9906          86 SEFIKQECLSAIGDPSPLIRATVGILITTI  115 (191)
Q Consensus        86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I  115 (191)
                      ...+...+...+.++++.+|..++.++..+
T Consensus       122 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_         122 SPKIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            234555666667777777877666655543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.041  Score=44.90  Aligned_cols=126  Identities=13%  Similarity=0.135  Sum_probs=91.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH-HH
Q psy9906          21 QSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE-FI   89 (191)
Q Consensus        21 ~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~-~i   89 (191)
                      .+.|..+|..|-..|.++..          .+++...|..++.  .+.+..+|..|+-.|++.-..      ++.+. .+
T Consensus        27 ~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~--~~~~~~~~~~a~~~L~~l~~~------~~~~~~i~   98 (529)
T d1jdha_          27 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTAGTLHNLSHH------REGLLAIF   98 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTTS------HHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhCC------chhHHHHH
Confidence            36689999999988887653          2456777888875  345778898888888876332      22222 22


Q ss_pred             H----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906          90 K----QECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLLPILK  154 (191)
Q Consensus        90 k----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~  154 (191)
                      +    ..|+..|.++++.++..++.++..++......+    ..+.+|.|+.++.+++......+..+|..+.
T Consensus        99 ~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  171 (529)
T d1jdha_          99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence            2    456667778899999999999999998764321    3568899999999988877777777776554

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.14  Score=43.14  Aligned_cols=170  Identities=17%  Similarity=0.285  Sum_probs=105.9

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHhhcC-------CChHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCC
Q psy9906          13 ILQLLKESQS--PDNLIQRAVQHKLEQLNTH-------PDFNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFP   82 (191)
Q Consensus        13 l~~lL~~~~s--~d~~~r~~AE~~L~~~~~~-------~~~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~   82 (191)
                      +..++....+  ++..+|..|-..|..+-..       ..+...++.++.. ..+.+..+|..|.-.|...+..+...+.
T Consensus       181 l~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  260 (861)
T d2bpta1         181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK  260 (861)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444554443  4688999998888764431       1122333333321 2456888999999999999988777666


Q ss_pred             hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-------------CCCCC-------chHHHHHHHHhhcCCc--
Q psy9906          83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG-------------DLKSW-------PELLPTLNDMLDSQDY--  140 (191)
Q Consensus        83 ~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-------------~~~~W-------pell~~L~~~l~~~~~--  140 (191)
                      +.....+...+.....+.++.+|.....++..++..+             ....+       +++++.+.+.+...+.  
T Consensus       261 ~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~  340 (861)
T d2bpta1         261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDP  340 (861)
T ss_dssp             HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6555556555555666778899998888888776553             11122       2355566666554321  


Q ss_pred             -----cccchhhhHH----------------HHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q psy9906         141 -----NVCELLPVLL----------------PILKETLFHHDWEIKESGILALGAIAEVNKSI  182 (191)
Q Consensus       141 -----~~~~~~l~~L----------------~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~  182 (191)
                           ..+..+..++                .++.+.+.+.+|..|++++.++|+++++...-
T Consensus       341 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~  403 (861)
T d2bpta1         341 EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV  403 (861)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred             cchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Confidence                 1223333333                23333456789999999999999999877543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.19  Score=39.16  Aligned_cols=162  Identities=14%  Similarity=0.101  Sum_probs=95.7

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCC--Ch-hHHhHHHHHHHHhhhhhhcCCCh
Q psy9906          17 LKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSE--DE-PTRSLSGLILKNNVRARFYEFPP   83 (191)
Q Consensus        17 L~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~--~~-~vRq~A~i~LKn~i~~~W~~i~~   83 (191)
                      +.-..+++.+.+..|-..|.++...          .+....|+.++......  .. .+|..+ ..+-+.....=.....
T Consensus       105 ~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~  183 (434)
T d1q1sc_         105 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT-WTLSNLCRNKNPAPPL  183 (434)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH-HHHHHHTCCCTTCCCH
T ss_pred             hhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH-HHHHHHhhcccccchh
Confidence            3334556788888887777765431          23344455554311100  11 112222 2222222111011112


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHhhcCCccccchhhhHHHHHhh----
Q psy9906          84 GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL----KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE----  155 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~----~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----  155 (191)
                      .....+-..+...+.+.++.++..++.++..++.....    -..+++++.+++++.+++...+..++.++..+..    
T Consensus       184 ~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~  263 (434)
T d1q1sc_         184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE  263 (434)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhH
Confidence            33334445666677778899999999999999866421    1245688999999998888888888887765542    


Q ss_pred             ----------------hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906         156 ----------------TLFHHDWEIKESGILALGAIAEVN  179 (191)
Q Consensus       156 ----------------~l~~~~~~~r~~~i~~~~ai~~~~  179 (191)
                                      -+.+++..+|..++.+++.+..+.
T Consensus       264 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  303 (434)
T d1q1sc_         264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR  303 (434)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc
Confidence                            123467889999988888887643

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.70  E-value=0.021  Score=46.42  Aligned_cols=163  Identities=11%  Similarity=0.071  Sum_probs=103.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhc---C--------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906          12 QILQLLKESQSPDNLIQRAVQHKLEQLNT---H--------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE   80 (191)
Q Consensus        12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~--------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~   80 (191)
                      .+-++.....|+|.+.+.+|-..+..+-.   .        .|....|..++.  .+.+..++..|+-.|.|.....   
T Consensus        77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~--~~~~~~iq~~a~~~L~ni~~~~---  151 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR--ENQPEMLQLEAAWALTNIASGT---  151 (503)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS--TTSCHHHHHHHHHHHHHHTTSC---
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHcCC---
Confidence            35556666788899999999888886532   1        234555666664  3456778888888887755321   


Q ss_pred             CChhHHHHHH----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906          81 FPPGVSEFIK----QECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLLPI  152 (191)
Q Consensus        81 i~~~~k~~ik----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L~~  152 (191)
                       +...+..+.    ..++..|.+++..++..++.+++.|+.......    =.++++.|..++.+.+......+..++.-
T Consensus       152 -~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~n  230 (503)
T d1wa5b_         152 -SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN  230 (503)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHH
Confidence             122222222    345555667888999999999999987642100    02456667777776665554444444444


Q ss_pred             Hh--------------------hhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906         153 LK--------------------ETLFHHDWEIKESGILALGAIAEVNK  180 (191)
Q Consensus       153 l~--------------------e~l~~~~~~~r~~~i~~~~ai~~~~~  180 (191)
                      ++                    +-+.+.+.+.+..+..+++-++++..
T Consensus       231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~  278 (503)
T d1wa5b_         231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ  278 (503)
T ss_dssp             HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred             HhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc
Confidence            43                    34456788888888888888776554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.3  Score=41.16  Aligned_cols=164  Identities=18%  Similarity=0.254  Sum_probs=99.7

Q ss_pred             CCCHHHHHHHHHHHHHhhcC-------CChHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHH
Q psy9906          22 SPDNLIQRAVQHKLEQLNTH-------PDFNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQEC   93 (191)
Q Consensus        22 s~d~~~r~~AE~~L~~~~~~-------~~~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~l   93 (191)
                      .++..+|..|-..+..+...       ..+..++..++.. ..+.+..+|..|.-.|...+..+...+.+.....+-..+
T Consensus       185 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~  264 (876)
T d1qgra_         185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAIT  264 (876)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34678899888887654431       1233334444432 234577899999999988888765555444444455555


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHhhC----------------CCCCC--------chHHHHHHHHhhcCC-------ccc
Q psy9906          94 LSAIGDPSPLIRATVGILITTIASKG----------------DLKSW--------PELLPTLNDMLDSQD-------YNV  142 (191)
Q Consensus        94 l~~l~~~~~~ir~~~~~~i~~Ia~~e----------------~~~~W--------pell~~L~~~l~~~~-------~~~  142 (191)
                      ...+.+....++......+..++..+                +...+        +.+++.+...+...+       ...
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  344 (876)
T d1qgra_         265 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP  344 (876)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchH
Confidence            56667777777777777777776532                11112        234444444444321       112


Q ss_pred             cchhhh----------------HHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhchh
Q psy9906         143 CELLPV----------------LLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLK  185 (191)
Q Consensus       143 ~~~~l~----------------~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~~  185 (191)
                      +.++..                +++++.+.+.+++|..|++++.++|++++|.....++
T Consensus       345 ~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~  403 (876)
T d1qgra_         345 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK  403 (876)
T ss_dssp             HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            233333                3355556677889999999999999999987655443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.34  E-value=0.048  Score=35.24  Aligned_cols=82  Identities=16%  Similarity=0.067  Sum_probs=59.3

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH
Q psy9906          16 LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLS   95 (191)
Q Consensus        16 lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~   95 (191)
                      ++....++|..+|..|-..|-.+.. ++....|...+.   +.++.||..|.-.|.+.     .  +    ......|..
T Consensus        27 L~~~l~d~~~~vR~~a~~~L~~~~~-~~~~~~L~~~l~---d~~~~VR~~a~~aL~~i-----~--~----~~~~~~L~~   91 (111)
T d1te4a_          27 LLESLSNEDWRIRGAAAWIIGNFQD-ERAVEPLIKLLE---DDSGFVRSGAARSLEQI-----G--G----ERVRAAMEK   91 (111)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHGGGCS-HHHHHHHHHHHH---HCCTHHHHHHHHHHHHH-----C--S----HHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhcch-hhhHHHHHhhhc---cchhHHHHHHHHHHHHh-----C--c----cchHHHHHH
Confidence            4455567899999999888877654 667888888875   35778999999888653     1  1    234556667


Q ss_pred             hhCCCCHHHHHHHHHHH
Q psy9906          96 AIGDPSPLIRATVGILI  112 (191)
Q Consensus        96 ~l~~~~~~ir~~~~~~i  112 (191)
                      .+.++++.+|..+..++
T Consensus        92 ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          92 LAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HTTSCCTHHHHHHHHHG
T ss_pred             HHcCCCHHHHHHHHHHH
Confidence            77788888988776655

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.2  Score=43.51  Aligned_cols=145  Identities=17%  Similarity=0.111  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhc------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906           9 GLIQILQLLKESQ-SPDNLIQRAVQHKLEQLNT------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEF   81 (191)
Q Consensus         9 ~~~~l~~lL~~~~-s~d~~~r~~AE~~L~~~~~------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i   81 (191)
                      .+..+...+...+ ++|...|..|-..|..+..      .|.....+-.++....+.++.+|..|+..|.++....-...
T Consensus       392 il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~  471 (888)
T d1qbkb_         392 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  471 (888)
T ss_dssp             SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSC
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            3556666776554 5678888888777765442      12222222233332345688999999999988765221122


Q ss_pred             ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHhhcCCccccchhhhHHHHH
Q psy9906          82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK---SWPELLPTLNDMLDSQDYNVCELLPVLLPIL  153 (191)
Q Consensus        82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~---~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l  153 (191)
                      .+.....+=..++..+.++++.++..++.++..++....+.   .-+++++.+...++..+......++.++..+
T Consensus       472 ~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l  546 (888)
T d1qbkb_         472 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL  546 (888)
T ss_dssp             HHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            22222234446777788899999999999999998765332   2466777777777765544444444444333

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.29  Score=37.28  Aligned_cols=104  Identities=11%  Similarity=0.119  Sum_probs=73.7

Q ss_pred             hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH-----HHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9906          44 FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ-----ECLSAIGDPSPLIRATVGILITTIASK  118 (191)
Q Consensus        44 ~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~-----~ll~~l~~~~~~ir~~~~~~i~~Ia~~  118 (191)
                      ..+.|..++.   +.++.+|..|+-.|+|.-..     +++.|..|++     .|++.|.++++.+|..++.++..++..
T Consensus         3 ~ip~lv~~L~---~~~~~~~~~a~~~l~~l~~~-----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~   74 (457)
T d1xm9a1           3 TIPKAVQYLS---SQDEKYQAIGAYYIQHTCFQ-----DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR   74 (457)
T ss_dssp             CHHHHHHHHH---SSCTHHHHHHHHHHHHHTSS-----CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHhC---CCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            3566777774   56889999999999987642     3566677764     488888889999999999999999854


Q ss_pred             CCCCC----CchHHHHHHHHhhcC-CccccchhhhHHHHHhh
Q psy9906         119 GDLKS----WPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE  155 (191)
Q Consensus       119 e~~~~----Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e  155 (191)
                      +....    -.+.++.++..+.+. ++..++.+..+|..+..
T Consensus        75 ~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          75 STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHh
Confidence            42110    123467777777543 55567777777766654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.19  Score=40.74  Aligned_cols=133  Identities=11%  Similarity=-0.023  Sum_probs=86.3

Q ss_pred             CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCC-hhHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC
Q psy9906          42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFP-PGVSEFIKQECLSAIGD-PSPLIRATVGILITTIASKG  119 (191)
Q Consensus        42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~-~~~k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e  119 (191)
                      .+..+-|..++.   +.+..+|..|+-.+.+.......... -.. ..+=..++..|.. .+..++..++.++..++..+
T Consensus        16 ~~aip~L~~lL~---~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (529)
T d1jdha_          16 TRAIPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             -CHHHHHHHHHT---CSCHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccHHHHHHHHh-hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence            355777777773   56888999999999887653221100 001 1223355666765 57889999999999998655


Q ss_pred             CCCCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHHHHHHHh
Q psy9906         120 DLKSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGILALGAIA  176 (191)
Q Consensus       120 ~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~  176 (191)
                      ....+   -+.+|.|+.++.++++..++.+..+|..++.                    -+.+++..++..+..+++.+.
T Consensus        92 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  171 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence            22111   2468999999998888777777777754432                    234456777777777777766


Q ss_pred             hh
Q psy9906         177 EV  178 (191)
Q Consensus       177 ~~  178 (191)
                      .+
T Consensus       172 ~~  173 (529)
T d1jdha_         172 YG  173 (529)
T ss_dssp             TT
T ss_pred             hh
Confidence            44

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.93  Score=34.26  Aligned_cols=99  Identities=16%  Similarity=0.082  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCC---------hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLNT-HPD---------FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE   80 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~---------~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~   80 (191)
                      ..|+++|   .++|++++..|=..|.++.. +++         -...|..++   .+.++.+|..|+-.|+|....+   
T Consensus         5 p~lv~~L---~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~~a~~aL~~L~~~~---   75 (457)
T d1xm9a1           5 PKAVQYL---SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL---RSPNQNVQQAAAGALRNLVFRS---   75 (457)
T ss_dssp             HHHHHHH---HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT---TSSCHHHHHHHHHHHHHHHSSC---
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH---CCCCHHHHHHHHHHHHHHHcCC---
Confidence            3555666   37789999999999999764 343         345566665   3578899999999999987432   


Q ss_pred             CChhHHHHHH-----HHHHHhhCC-CCHHHHHHHHHHHHHHHhhCC
Q psy9906          81 FPPGVSEFIK-----QECLSAIGD-PSPLIRATVGILITTIASKGD  120 (191)
Q Consensus        81 i~~~~k~~ik-----~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~  120 (191)
                        ++.|..+.     ..++..+.+ .++.+|..+..++..++..+.
T Consensus        76 --~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~  119 (457)
T d1xm9a1          76 --TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE  119 (457)
T ss_dssp             --HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             --HHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh
Confidence              33444443     345555654 678899999999999998763

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.06  E-value=4  Score=31.71  Aligned_cols=161  Identities=14%  Similarity=0.150  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCCChHHHHHHHHhh----h-CCCChhHHhHHHH-HHHHhhhhhhcCCCh
Q psy9906          11 IQILQLLKESQSPDNLIQRAVQHKLEQLN-THPDFNNYLIFVLTK----L-TSEDEPTRSLSGL-ILKNNVRARFYEFPP   83 (191)
Q Consensus        11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~-~~~~~~~~L~~il~~----~-~~~~~~vRq~A~i-~LKn~i~~~W~~i~~   83 (191)
                      .-+.+++....|+|+.+|......|..+. +.++.-.++...+.+    - -+......-.-.+ .+...+...=..+.+
T Consensus       133 ~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plke  212 (343)
T d2jaka1         133 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  212 (343)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchH
Confidence            44678888888999999999999998764 345544443333211    0 0001111111111 222222221223678


Q ss_pred             hHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC--------------CCCCCch----HHHHHHHHhhcCCcccc-
Q psy9906          84 GVSEFIKQECLSAIGD-PSPLIRATVGILITTIASKG--------------DLKSWPE----LLPTLNDMLDSQDYNVC-  143 (191)
Q Consensus        84 ~~k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e--------------~~~~Wpe----ll~~L~~~l~~~~~~~~-  143 (191)
                      +-+..++..++.+... .-...-.+++.|+......|              ||..++.    ++..+...+..-++... 
T Consensus       213 eh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~  292 (343)
T d2jaka1         213 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFV  292 (343)
T ss_dssp             HHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence            8888999888888876 34666788899998888887              4444432    77777777776655443 


Q ss_pred             chhhhHHHHHhhhcCCCcHHHHHHHHHH
Q psy9906         144 ELLPVLLPILKETLFHHDWEIKESGILA  171 (191)
Q Consensus       144 ~~~l~~L~~l~e~l~~~~~~~r~~~i~~  171 (191)
                      .....+++.+.+.+-++...+-+.|+..
T Consensus       293 ~~~~~lf~~la~ci~S~h~qVAErAl~~  320 (343)
T d2jaka1         293 KIMEPLFRQLAKCVSSPHFQVAERALYY  320 (343)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4444677888888888888888887653