Psyllid ID: psy9944

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MSEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVLESHKFETSRI
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccHHHHHHHHHHccccccccccEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEccccHHHHHHHHHHHccccccccccccHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHccEccccEccccc
Coil and Loop (DISEMBL)
msegsmsegiyrrsgstTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFrdlpepllsTELHVHLCNAagmecateDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLAsiwgptlmhveNWTTVIVVTYYqvkgpsspipaVGIITIILSesvleshkfetsri
Flexible Loop (DISEMBL)
msegsmsegiyrrsgsTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASiwgptlmhVENWTTVIVVTYYQVKGPSSPIPAVGIITIIlsesvleshkfetsri
Low Complexity Region (SEG)
MSEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVLESHKFETSRI
Disordered region (IsUnstruct)
*********************KLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESV***********
Disordered Region (DISOPRED)
*SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVL**********
Disordered Region (DISEMBL)
***************STTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVL**********
Disordered Region (DISPRO)
***GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVLESHKF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVLESHKFETSRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q96P48	1450	Arf-GAP with Rho-GAP doma	no	N/A	0.737	0.093	0.426	9e-21
Q4LDD4	1452	Arf-GAP with Rho-GAP doma	yes	N/A	0.737	0.092	0.411	9e-20
P97393	1501	Rho GTPase-activating pro	no	N/A	0.710	0.086	0.348	1e-16
Q13017	1502	Rho GTPase-activating pro	no	N/A	0.710	0.086	0.348	3e-16
Q9Z1N3	2626	Unconventional myosin-IXa	no	N/A	0.737	0.051	0.340	8e-16
B2RTY4	2548	Unconventional myosin-IXa	no	N/A	0.737	0.052	0.340	8e-16
Q8C170	2542	Unconventional myosin-IXa	no	N/A	0.737	0.053	0.340	1e-15
Q8R5G7	1538	Arf-GAP with Rho-GAP doma	no	N/A	0.710	0.084	0.335	1e-15
Q2M1Z3	1444	Rho GTPase-activating pro	no	N/A	0.688	0.087	0.361	3e-15
Q9P227	1491	Rho GTPase-activating pro	no	N/A	0.797	0.097	0.337	4e-15

>sp|Q96P48|ARAP1_HUMAN Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1 PE=1 SV=3

 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 1/136 (0%)

Query: 4    GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
            G  SEGIYR+ G T+   +LL   RQDA  V L   +    DVS+ LKRF RDLP+ L +
Sbjct: 985  GLTSEGIYRKCGQTSKTQRLLESLRQDARSVHLKEGEQHVDDVSSALKRFLRDLPDGLFT 1044

Query: 64   TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
                +    A+ +E   E+KV  YR LL +L P++  TV+ L+ HLY +Q   D N+M+V
Sbjct: 1045 RAQRLTWLEASEIE-DEEEKVSRYRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMNV 1103

Query: 124  ENLASIWGPTLMHVEN 139
             NLA ++GPTL   + 
Sbjct: 1104 HNLAIVFGPTLFQTDG 1119

Phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating protein that modulates actin cytoskeleton remodeling by regulating ARF and RHO family members. Is activated by phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) binding. Can be activated by phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding, albeit with lower efficiency. Has a preference for ARF1 and ARF5.
Homo sapiens (taxid: 9606)

>sp|Q4LDD4|ARAP1_MOUSE Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Arap1 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 78/136 (57%), Gaps = 1/136 (0%)

Query: 4    GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
            G  SEGIYR+ G T+   +LL   RQDA  V L   +    DVS+ LKRF RDLP+ L +
Sbjct: 987  GLTSEGIYRKCGQTSKTQRLLDSLRQDARSVHLKEGEQHVDDVSSALKRFLRDLPDGLFT 1046

Query: 64   TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
                +    A+ +E   E+K+  YR LL  L P++  TV+ L+ HLY +Q   D N+M+ 
Sbjct: 1047 RAQRLAWLEASEIE-DEEEKISRYRELLVHLPPVNRATVKALISHLYCVQCFSDTNQMNT 1105

Query: 124  ENLASIWGPTLMHVEN 139
             NLA ++GPTL   + 
Sbjct: 1106 HNLAIVFGPTLFQTDG 1121

Phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating protein that modulates actin cytoskeleton remodeling by regulating ARF and RHO family members. Is activated by phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) binding. Can be activated by phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding, albeit with lower efficiency. Has a preference for ARF1 and ARF5.

Mus musculus (taxid: 10090)

>sp|P97393|RHG05_MOUSE Rho GTPase-activating protein 5 OS=Mus musculus GN=Arhgap5 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 4    GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
            G  +EG+YR SG+ T+   +  +F QD   + L+  + T + V+  LK FF DLP+PL+ 
Sbjct: 1288 GLCTEGLYRVSGNKTDQDNIQKQFDQD-HNINLASMEVTVNAVAGALKAFFADLPDPLIP 1346

Query: 64   TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
              LH  L  AA +   TE + H  + +++K HP++Y   R ++ HL  + ++   N M+ 
Sbjct: 1347 YSLHPELLEAAKIPDKTE-RFHALKEIVKKFHPVNYDVFRYVITHLNRVSQQNKINLMTA 1405

Query: 124  ENLASIWGPTLM 135
            +NL+  + PTLM
Sbjct: 1406 DNLSICFWPTLM 1417

GTPase-activating protein for Rho family members. May play a role in the reduction of the p21rasGTPase-activating potential of RASA1/p120GAP.

Mus musculus (taxid: 10090)

>sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 4    GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
            G  +EG+YR SG+ T+   +  +F QD   + L   + T + V+  LK FF DLP+PL+ 
Sbjct: 1289 GLCTEGLYRVSGNKTDQDNIQKQFDQD-HNINLVSMEVTVNAVAGALKAFFADLPDPLIP 1347

Query: 64   TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
              LH  L  AA +   TE ++H  + +++K HP++Y   R ++ HL  + ++   N M+ 
Sbjct: 1348 YSLHPELLEAAKIPDKTE-RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 1406

Query: 124  ENLASIWGPTLM 135
            +NL+  + PTLM
Sbjct: 1407 DNLSICFWPTLM 1418

GTPase-activating protein for Rho family members. May play a role in the reduction of the p21rasGTPase-activating potential of RASA1/p120GAP.

Homo sapiens (taxid: 9606)

>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 4    GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
            G  +EGIYR+SGST  + +L      DA  V L  + Y  H +++V K++ RDLP PL++
Sbjct: 2158 GLYTEGIYRKSGSTNKIKELRQGLDTDAESVNL--DDYNIHVIASVFKQWLRDLPNPLMT 2215

Query: 64   TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             EL+     A G++   E    +Y S++++L   H  T+ +L+ HL  I  ++D N+MS 
Sbjct: 2216 FELYEEFLRAMGLQERKETIRGVY-SVIDQLSRTHLSTLERLIFHLVRIALQEDTNRMSA 2274

Query: 124  ENLASIWGPTLMHVENWT 141
              LA ++ P ++   + T
Sbjct: 2275 NALAIVFAPCILRCPDTT 2292

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho by stimulating it's GTPase activity in neurons, has a role in the regulation of neuronal morphology and function.

Rattus norvegicus (taxid: 10116)

>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 4    GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
            G  +EGIYR+SGST  + +L      DA  V L  + Y  H +++V K++ RDLP PL++
Sbjct: 2090 GLYTEGIYRKSGSTNKIKELRQGLDTDAESVNL--DDYNIHVIASVFKQWLRDLPNPLMT 2147

Query: 64   TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             EL+     A G++   E    +Y S++++L   H  T+ +L+ HL  I  ++D N+MS 
Sbjct: 2148 FELYEEFLRAMGLQERKETIRGVY-SVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSA 2206

Query: 124  ENLASIWGPTLMHVENWT 141
              LA ++ P ++   + T
Sbjct: 2207 NALAIVFAPCILRCPDTT 2224

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Homo sapiens (taxid: 9606)

>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 4    GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
            G  +EGIYR+SGST  + +L      DA  V L  + Y  H +++V K++ RDLP PL++
Sbjct: 2092 GLYTEGIYRKSGSTNKIKELRQGLDTDAESVNL--DDYNIHVIASVFKQWLRDLPNPLMT 2149

Query: 64   TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             EL+     A G++   E    +Y S++++L   H  T+ +L+ HL  I  ++D N+MS 
Sbjct: 2150 FELYEEFLRAMGLQERKETIRGVY-SVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSA 2208

Query: 124  ENLASIWGPTLMHVENWT 141
              LA ++ P ++   + T
Sbjct: 2209 NALAIVFAPCILRCPDTT 2226

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Mus musculus (taxid: 10090)

>sp|Q8R5G7|ARAP3_MOUSE Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Arap3 PE=1 SV=3

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 8    EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
            EG+YR+ G+     +LLAEFR+DA  V+L   ++   DV+  LKRFFR+L +P+ S  L 
Sbjct: 934  EGVYRKGGARARSLRLLAEFRRDARSVKLRPREHFVEDVTDTLKRFFRELDDPVTSARLL 993

Query: 68   VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
                 AA +    + ++  Y+ ++  L  ++  T+  L+GHLY +Q+    N+M   NLA
Sbjct: 994  PRWREAAELSQKNQ-RLEKYKEVISCLPRVNRRTLATLIGHLYRVQKCASLNQMCTRNLA 1052

Query: 128  SIWGPTLMHVE 138
             ++ P++   +
Sbjct: 1053 LLFAPSVFQTD 1063

Phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating protein that modulates actin cytoskeleton remodeling by regulating ARF and RHO family members. Is activated by phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) binding. Can be activated by phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding, albeit with lower efficiency. Acts preferentially on ARF5 and on RHOA.

Mus musculus (taxid: 10090)

>sp|Q2M1Z3|RHG31_HUMAN Rho GTPase-activating protein 31 OS=Homo sapiens GN=ARHGAP31 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE--HDVSTVLKRFFRDLPEPLLSTE 65
           +GIYR SG T+N+ +L  EF  D     L+RE Y +  H V ++ K +FR+LP PLL+ E
Sbjct: 52  DGIYRLSGVTSNIQRLRQEFGSDQC-PDLTREVYLQDIHCVGSLCKLYFRELPNPLLTYE 110

Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
           L+     A    C  E ++   ++++++L P HY T+  L+ HL  I     +  M   N
Sbjct: 111 LYEKFTEAVS-HCPEEGQLARIQNVIQELPPSHYRTLEYLIRHLAHIASFSSKTNMHARN 169

Query: 126 LASIWGPTLM 135
           LA +W P L+
Sbjct: 170 LALVWAPNLL 179

Functions as a GTPase-activating protein (GAP) for RAC1 and CDC42. Required for cell spreading, polarized lamellipodia formation and cell migration.

Homo sapiens (taxid: 9606)

>sp|Q9P227|RHG23_HUMAN Rho GTPase-activating protein 23 OS=Homo sapiens GN=ARHGAP23 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 2    SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDV-STVLKRFFRDLPEP 60
            + G  S GIYR  G+   VS L  +  +    + L  E++ + +V S++LK FFR LPEP
Sbjct: 932  ARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQDLNVISSLLKSFFRKLPEP 991

Query: 61   LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
            L + + +     A  +E A E ++   R L+  L   +Y T++ L+GHL  I +  ++NK
Sbjct: 992  LFTDDKYNDFIEANRIEDARE-RMRTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNK 1050

Query: 121  MSVENLASIWGPTLMHVENWTTVIVVTY 148
            M   NLA ++GPTL+         +VT+
Sbjct: 1051 MEPRNLALVFGPTLVRTSEDNMTDMVTH 1078

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
328720808	1079	PREDICTED: arf-GAP with Rho-GAP domain,	0.765	0.129	0.6	3e-49
307212543	1274	Centaurin-delta-1 [Harpegnathos saltator	0.726	0.104	0.529	1e-36
322780408	1266	hypothetical protein SINV_03206 [Solenop	0.726	0.105	0.514	1e-35
242017549	1151	conserved hypothetical protein [Pediculu	0.743	0.118	0.540	2e-35
189235004	1082	PREDICTED: similar to RhoGAP15B CG4937-P	0.732	0.123	0.503	2e-35
307167466	1238	Centaurin-delta-1 [Camponotus floridanus	0.726	0.107	0.5	3e-35
332020429	1209	Arf-GAP with Rho-GAP domain, ANK repeat	0.726	0.110	0.507	9e-35
383853017	1235	PREDICTED: uncharacterized protein LOC10	0.726	0.107	0.514	9e-35
383853019	1209	PREDICTED: uncharacterized protein LOC10	0.726	0.110	0.514	9e-35
340716138	1251	PREDICTED: hypothetical protein LOC10064	0.748	0.109	0.489	2e-33

>gi|328720808|ref|XP_001949678.2| PREDICTED: arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2-like [Acyrthosiphon pisum]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 118/145 (81%), Gaps = 5/145 (3%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G ++EG+YRRSGS +N +KLL+ FR+DAW VQ S++ Y+ +DV++VLKRFFRDLPEPLL+
Sbjct: 655 GCLTEGVYRRSGSCSNTTKLLSAFRKDAWAVQFSQQDYSVYDVASVLKRFFRDLPEPLLT 714

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
           TELH HLCNA    C+ ++K+ +YRSLLE+L  I+YVTVRKL+ HLY+IQ + ++N M+V
Sbjct: 715 TELHTHLCNAVKCNCSEDEKIILYRSLLERLPAINYVTVRKLLSHLYYIQLQNEKNLMTV 774

Query: 124 ENLASIWGPTLMHVE-----NWTTV 143
           +NLASIWGPTLMH+E     NW+ +
Sbjct: 775 QNLASIWGPTLMHIEDSDSLNWSKI 799

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212543|gb|EFN88266.1| Centaurin-delta-1 [Harpegnathos saltator]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 97/134 (72%), Gaps = 1/134 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G MSEGIYRRSGS++ V KLL  FR+DAW  Q++R  YTEHDV+TVL+RF RDLP+PL  
Sbjct: 856 GMMSEGIYRRSGSSSAVVKLLEAFRKDAWATQITRNSYTEHDVATVLRRFLRDLPDPLFP 915

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             +H  LC AA    + E++V  YR LL  L+P+   T+R+++ HL+ + ++  RN M+V
Sbjct: 916 ANIHDRLCLAA-ESTSEENRVATYRKLLSVLNPVTSATLRRILAHLHGLSQQSARNLMTV 974

Query: 124 ENLASIWGPTLMHV 137
           ENL+++WGPTLMH 
Sbjct: 975 ENLSAVWGPTLMHA 988

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780408|gb|EFZ09896.1| hypothetical protein SINV_03206 [Solenopsis invicta]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 95/134 (70%), Gaps = 1/134 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G M+EGIYRRSGS++ V KLL  FR+DAW  Q++R  YTEHDV+TVL+RF RDLP+PL  
Sbjct: 848 GMMTEGIYRRSGSSSAVVKLLEAFRRDAWATQITRNVYTEHDVATVLRRFLRDLPDPLFP 907

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             +H   C  A    + E++V  YR LL  L+PI   T+R+++ HL+ + ++  RN M+V
Sbjct: 908 PAIHDRFC-LASESTSEENRVATYRKLLSTLNPITSATLRRILAHLHGLSQQSARNLMTV 966

Query: 124 ENLASIWGPTLMHV 137
           ENL+++WGPTLMH 
Sbjct: 967 ENLSAVWGPTLMHA 980

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017549|ref|XP_002429250.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514146|gb|EEB16512.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPL 61
           ++G  SEGIYRR+GS   VS+LLA FR +AW VQLSR++YTE DVS+VLKRFFRDLPEPL
Sbjct: 729 TQGVFSEGIYRRNGSNRAVSQLLASFRCNAWSVQLSRDEYTEFDVSSVLKRFFRDLPEPL 788

Query: 62  LSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
           L  E+   L          E K+  Y++ L+KL  I+Y+T R+L+ HL+FI + K++N M
Sbjct: 789 LVPEIQEDLGKILAFTNVKE-KIEEYKNTLKKLPSINYLTARRLLCHLHFIDKLKEKNLM 847

Query: 122 SVENLASIWGPTLMHVE 138
             ENLA+IWGPT++ V+
Sbjct: 848 GAENLAAIWGPTILQVQ 864

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235004|ref|XP_970036.2| PREDICTED: similar to RhoGAP15B CG4937-PB [Tribolium castaneum] gi|270003924|gb|EFA00372.1| hypothetical protein TcasGA2_TC003215 [Tribolium castaneum]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           GSM+EGIYRR G+ T V+++LA+FR+DAW VQL+ ++YTEHDV+T LKRF RD+PEP+L+
Sbjct: 658 GSMTEGIYRRPGTNTAVAEILAKFRKDAWAVQLTIDKYTEHDVATALKRFIRDIPEPVLT 717

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
                +L   + ++   E ++ +Y++ L++L PI Y T +KL+GHL+FI  +  +N M+V
Sbjct: 718 NSQRQYLHQVSLVKNKDE-RIRMYKAALDQLPPISYKTAKKLLGHLHFIASQSKKNLMNV 776

Query: 124 ENLASIWGPTLMHVE 138
           +NLA++WGP+LMH E
Sbjct: 777 DNLAAVWGPSLMHQE 791

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167466|gb|EFN61039.1| Centaurin-delta-1 [Camponotus floridanus]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G MSEGIYRRSGS++ V KLL  FR+DAW  Q++R  YTEHDV+TVL+RF RDLP+PL  
Sbjct: 820 GMMSEGIYRRSGSSSAVVKLLEAFRRDAWATQITRNSYTEHDVATVLRRFLRDLPDPLFP 879

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            ++H  LC    +  + E++V  YR LL  L P+   T+R+++ HL+ + ++  RN M+ 
Sbjct: 880 AKIHDRLCLTTDL-TSEENRVTTYRKLLSTLDPVTSATLRRILAHLHGLSQQSARNLMTA 938

Query: 124 ENLASIWGPTLMHV 137
           +NL+++WGPTLMH 
Sbjct: 939 DNLSAVWGPTLMHA 952

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020429|gb|EGI60849.1| Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [Acromyrmex echinatior]

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G M+EGIYRRSGS++ V KLL  FR+DAW  Q++R  Y+EHDV+TVL+RF RDLPE L  
Sbjct: 791 GMMTEGIYRRSGSSSAVVKLLEAFRRDAWATQITRNVYSEHDVATVLRRFLRDLPESLFP 850

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             +H  LC  A    + E+++  YR LL  L+PI   T+R+++ HL+ + ++  RN M+V
Sbjct: 851 PNIHDRLC-LASESTSEENRIATYRKLLSTLNPITSATLRRILAHLHGLSQQSARNLMTV 909

Query: 124 ENLASIWGPTLMHV 137
           ENL+++WGPTLMH 
Sbjct: 910 ENLSAVWGPTLMHA 923

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853017|ref|XP_003702021.1| PREDICTED: uncharacterized protein LOC100879779 isoform 1 [Megachile rotundata]

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 92/134 (68%), Gaps = 1/134 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G M+EGIYR+SGS + V KLL  FR+DAW  Q++RE YTEHDV+TVL+RF RDLP PL  
Sbjct: 817 GIMTEGIYRQSGSNSAVVKLLQAFRRDAWATQITREAYTEHDVATVLRRFLRDLPNPLFP 876

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             +H  LC  +      +D+V  YR LL  L PI   T+R+++ HL+ + ++  RN M+ 
Sbjct: 877 ANIHDRLCFTSESN-NEDDRVSTYRKLLTTLSPIPAATLRRVLAHLHCLSQQSSRNLMTC 935

Query: 124 ENLASIWGPTLMHV 137
           ENL++IWGPTLMH 
Sbjct: 936 ENLSAIWGPTLMHA 949

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853019|ref|XP_003702022.1| PREDICTED: uncharacterized protein LOC100879779 isoform 2 [Megachile rotundata]

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 92/134 (68%), Gaps = 1/134 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G M+EGIYR+SGS + V KLL  FR+DAW  Q++RE YTEHDV+TVL+RF RDLP PL  
Sbjct: 791 GIMTEGIYRQSGSNSAVVKLLQAFRRDAWATQITREAYTEHDVATVLRRFLRDLPNPLFP 850

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             +H  LC  +      +D+V  YR LL  L PI   T+R+++ HL+ + ++  RN M+ 
Sbjct: 851 ANIHDRLCFTSESN-NEDDRVSTYRKLLTTLSPIPAATLRRVLAHLHCLSQQSSRNLMTC 909

Query: 124 ENLASIWGPTLMHV 137
           ENL++IWGPTLMH 
Sbjct: 910 ENLSAIWGPTLMHA 923

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716138|ref|XP_003396558.1| PREDICTED: hypothetical protein LOC100644485 [Bombus terrestris]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 94/143 (65%), Gaps = 6/143 (4%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G MS+GIYR++GS + V KLL  FR+DAW  Q++R  YTEHDV+TVL+RF RDLP PL  
Sbjct: 833 GIMSKGIYRQNGSNSAVVKLLKAFRRDAWATQITRSAYTEHDVATVLRRFLRDLPNPLFP 892

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             +H  LC  A     +E +V  YR LL  L P+   T+R+++ HLY + ++  +N M+ 
Sbjct: 893 PNIHDRLCLTAETVNDSE-QVSAYRKLLSTLTPVPAATLRRILAHLYCLSQQSSKNLMTG 951

Query: 124 ENLASIWGPTLMH-----VENWT 141
           ENL++IWGPTLMH     VE W 
Sbjct: 952 ENLSAIWGPTLMHADESSVEEWN 974

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
FB|FBgn0030808	1552	RhoGAP15B "Rho GTPase activati	0.699	0.082	0.522	6e-29
UNIPROTKB|E7EU13	1194	ARAP1 "Arf-GAP with Rho-GAP do	0.726	0.111	0.441	1.2e-21
UNIPROTKB|Q96P48	1450	ARAP1 "Arf-GAP with Rho-GAP do	0.726	0.091	0.441	1.6e-21
UNIPROTKB|E2R818	1436	ARAP1 "Uncharacterized protein	0.726	0.092	0.433	2e-21
UNIPROTKB|I3LPU3	1051	ARAP1 "Uncharacterized protein	0.726	0.126	0.426	2.1e-21
UNIPROTKB|I3LFX1	1457	ARAP1 "Uncharacterized protein	0.726	0.091	0.426	3.3e-21
UNIPROTKB|F1SUV2	1459	ARAP1 "Uncharacterized protein	0.726	0.091	0.426	3.3e-21
UNIPROTKB|F1LM60	1443	Arap1 "Protein Arap1" [Rattus	0.726	0.092	0.426	1.4e-20
MGI|MGI:1916960	1452	Arap1 "ArfGAP with RhoGAP doma	0.726	0.091	0.426	1.4e-20
UNIPROTKB|D4ABQ7	1454	Arap1 "Protein Arap1" [Rattus	0.726	0.091	0.426	1.4e-20

FB|FBgn0030808 RhoGAP15B "Rho GTPase activating protein at 15B" [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 6.0e-29, P = 6.0e-29
 Identities = 70/134 (52%), Positives = 95/134 (70%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
             GSMSEGIYR+SGS  ++ KL++ FR DA+ V+++R +Y EHDV+ VLKRF RDLPE LL 
Sbjct:  1124 GSMSEGIYRKSGSENSMHKLMSAFRADAFNVEITRNEYNEHDVANVLKRFMRDLPERLLG 1183

Query:    64 --TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
               T+  V +   A    A+E K+ IYR LL +L  I   T+R+++GHL FI  ++ +NKM
Sbjct:  1184 KLTDSFVFVTELA---VASE-KIPIYRELLARLSAIERETLRRIVGHLVFISSQQAKNKM 1239

Query:   122 SVENLASIWGPTLM 135
             SV+NL  IWGPTL+
Sbjct:  1240 SVQNLTMIWGPTLL 1253

GO:0005083 "small GTPase regulator activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

UNIPROTKB|E7EU13 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 60/136 (44%), Positives = 83/136 (61%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   740 GLTSEGIYRKCGQTSKTQRLLESLRQDARSVHLKEGEQHVD-DVSSALKRFLRDLPDGLF 798

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+KV  YR LL +L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:   799 TRAQRLTWLEASEIE-DEEEKVSRYRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMN 857

Query:   123 VENLASIWGPTLMHVE 138
             V NLA ++GPTL   +
Sbjct:   858 VHNLAIVFGPTLFQTD 873

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|Q96P48 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 60/136 (44%), Positives = 83/136 (61%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   985 GLTSEGIYRKCGQTSKTQRLLESLRQDARSVHLKEGEQHVD-DVSSALKRFLRDLPDGLF 1043

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+KV  YR LL +L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:  1044 TRAQRLTWLEASEIE-DEEEKVSRYRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMN 1102

Query:   123 VENLASIWGPTLMHVE 138
             V NLA ++GPTL   +
Sbjct:  1103 VHNLAIVFGPTLFQTD 1118

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0051497 "negative regulation of stress fiber assembly" evidence=IMP

GO:0030037 "actin filament reorganization involved in cell cycle" evidence=TAS

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0051270 "regulation of cellular component movement" evidence=IMP

GO:0008060 "ARF GTPase activator activity" evidence=IDA

GO:0005100 "Rho GTPase activator activity" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043089 "positive regulation of Cdc42 GTPase activity" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

UNIPROTKB|E2R818 ARAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 59/136 (43%), Positives = 84/136 (61%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V+L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   971 GLTSEGIYRKCGQTSKTQRLLESLRQDARSVRLKEGEQHVD-DVSSALKRFLRDLPDGLF 1029

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +   +A+ +E   E+KV  YR LL +L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:  1030 TRAQRLAWLDASEIE-DEEEKVSRYRELLARLPPVNRATVKALISHLYCVQCFSDTNQMN 1088

Query:   123 VENLASIWGPTLMHVE 138
               NLA ++GPTL   +
Sbjct:  1089 THNLAIVFGPTLFQTD 1104

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|I3LPU3 ARAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 2.1e-21, P = 2.1e-21
 Identities = 58/136 (42%), Positives = 83/136 (61%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V+L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   660 GLTSEGIYRKCGQTSKTQRLLESLRQDARSVRLKEGEQHVD-DVSSALKRFLRDLPDGLF 718

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+K+  YR LL +L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:   719 TRVQRLSWLEASEIE-DEEEKISRYRELLARLPPVNRATVKALISHLYCVQCFSDTNQMN 777

Query:   123 VENLASIWGPTLMHVE 138
               NLA ++GPTL   +
Sbjct:   778 THNLAIVFGPTLFQTD 793

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|I3LFX1 ARAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 58/136 (42%), Positives = 83/136 (61%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V+L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   992 GLTSEGIYRKCGQTSKTQRLLESLRQDARSVRLKEGEQHVD-DVSSALKRFLRDLPDGLF 1050

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+K+  YR LL +L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:  1051 TRVQRLSWLEASEIE-DEEEKISRYRELLARLPPVNRATVKALISHLYCVQCFSDTNQMN 1109

Query:   123 VENLASIWGPTLMHVE 138
               NLA ++GPTL   +
Sbjct:  1110 THNLAIVFGPTLFQTD 1125

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1SUV2 ARAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 58/136 (42%), Positives = 83/136 (61%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V+L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   994 GLTSEGIYRKCGQTSKTQRLLESLRQDARSVRLKEGEQHVD-DVSSALKRFLRDLPDGLF 1052

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+K+  YR LL +L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:  1053 TRVQRLSWLEASEIE-DEEEKISRYRELLARLPPVNRATVKALISHLYCVQCFSDTNQMN 1111

Query:   123 VENLASIWGPTLMHVE 138
               NLA ++GPTL   +
Sbjct:  1112 THNLAIVFGPTLFQTD 1127

GO:0051497 "negative regulation of stress fiber assembly" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0051270 "regulation of cellular component movement" evidence=IEA

GO:0043089 "positive regulation of Cdc42 GTPase activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1LM60 Arap1 "Protein Arap1" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 58/136 (42%), Positives = 81/136 (59%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   989 GLTSEGIYRKCGQTSKTQRLLDSLRQDARSVHLKEGEQHVD-DVSSALKRFLRDLPDGLF 1047

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+K+  YR LL  L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:  1048 TRAQRLAWLEASEIE-DEEEKISRYRELLVHLPPVNRATVKALISHLYCVQCFSDTNQMN 1106

Query:   123 VENLASIWGPTLMHVE 138
               NLA ++GPTL   +
Sbjct:  1107 THNLAIVFGPTLFQTD 1122

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

MGI|MGI:1916960 Arap1 "ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 58/136 (42%), Positives = 81/136 (59%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   987 GLTSEGIYRKCGQTSKTQRLLDSLRQDARSVHLKEGEQHVD-DVSSALKRFLRDLPDGLF 1045

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+K+  YR LL  L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:  1046 TRAQRLAWLEASEIE-DEEEKISRYRELLVHLPPVNRATVKALISHLYCVQCFSDTNQMN 1104

Query:   123 VENLASIWGPTLMHVE 138
               NLA ++GPTL   +
Sbjct:  1105 THNLAIVFGPTLFQTD 1120

GO:0001921 "positive regulation of receptor recycling" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=ISO

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0031702 "type 1 angiotensin receptor binding" evidence=ISO

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0043089 "positive regulation of Cdc42 GTPase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051270 "regulation of cellular component movement" evidence=ISO

GO:0051491 "positive regulation of filopodium assembly" evidence=ISO

GO:0051497 "negative regulation of stress fiber assembly" evidence=ISO

UNIPROTKB|D4ABQ7 Arap1 "Protein Arap1" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 58/136 (42%), Positives = 81/136 (59%)

Query:     4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLL 62
             G  SEGIYR+ G T+   +LL   RQDA  V L   EQ+ + DVS+ LKRF RDLP+ L 
Sbjct:   989 GLTSEGIYRKCGQTSKTQRLLDSLRQDARSVHLKEGEQHVD-DVSSALKRFLRDLPDGLF 1047

Query:    63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
             +    +    A+ +E   E+K+  YR LL  L P++  TV+ L+ HLY +Q   D N+M+
Sbjct:  1048 TRAQRLAWLEASEIE-DEEEKISRYRELLVHLPPVNRATVKALISHLYCVQCFSDTNQMN 1106

Query:   123 VENLASIWGPTLMHVE 138
               NLA ++GPTL   +
Sbjct:  1107 THNLAIVFGPTLFQTD 1122

GO:0005100 "Rho GTPase activator activity" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0043089 "positive regulation of Cdc42 GTPase activity" evidence=IEA

GO:0051270 "regulation of cellular component movement" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0051497 "negative regulation of stress fiber assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	2e-57
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	8e-44
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	2e-37
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	3e-34
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	6e-31
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	4e-26
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	1e-25
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	3e-24
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	7e-24
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	2e-23
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	2e-22
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	2e-20
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	3e-20
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	2e-19
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	6e-19
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	6e-19
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	1e-18
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	2e-17
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	2e-17
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	5e-17
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	5e-17
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	1e-16
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	1e-16
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	1e-16
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	6e-16
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	3e-15
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	6e-15
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	3e-14
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	3e-14
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	4e-13
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	1e-11
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	1e-09
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	1e-08
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	1e-07
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	1e-07
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	3e-07
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	9e-05
cd04380	220	cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas	0.001

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score =  178 bits (453), Expect = 2e-57
 Identities = 68/133 (51%), Positives = 93/133 (69%), Gaps = 1/133 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G MSEGIYR++G  ++V KLL  FR+DA  VQL   +YT HDV+ VLKRF RDLP+PLL+
Sbjct: 30  GLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLT 89

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
           +ELH     AA +E   E ++  Y+ L+ +L PI+  T++ L+GHLY +Q+  D N+MSV
Sbjct: 90  SELHAEWIEAAELENKDE-RIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSV 148

Query: 124 ENLASIWGPTLMH 136
            NLA ++GPTL  
Sbjct: 149 HNLALVFGPTLFQ 161

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  142 bits (360), Expect = 8e-44
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 2/133 (1%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EGI+R SGS + + +L   F           E+   H V+++LK F R+LPEPLL+
Sbjct: 15  GLDTEGIFRVSGSASRIKELREAFDSGEDVDLDL-EEEDVHVVASLLKLFLRELPEPLLT 73

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            EL+     AA  E   E++V   R LL KL P +  T+R L+ HL  + +  + NKM+ 
Sbjct: 74  FELYEEFIEAAKSEDE-EERVEALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNA 132

Query: 124 ENLASIWGPTLMH 136
            NLA ++GPTL+ 
Sbjct: 133 HNLAIVFGPTLLR 145

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  126 bits (320), Expect = 2e-37
 Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
           +EGIYR SGS + V +L   F        L   +Y  HDV+ +LK F R+LPEPL++ EL
Sbjct: 21  TEGIYRVSGSKSRVKELRDAFDSG-PDPDLDLSEYDVHDVAGLLKLFLRELPEPLITYEL 79

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
           +     AA +E  TE ++   R LL  L P +  T+R L+ HL  + E  + NKM+  NL
Sbjct: 80  YEEFIEAAKLEDETE-RLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNL 138

Query: 127 ASIWGPTLMH 136
           A ++GPTL+ 
Sbjct: 139 AIVFGPTLLR 148

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  118 bits (298), Expect = 3e-34
 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPL 61
             G  +EGI+R SGS + + +L  +F  D  +     E Y  HDV+++LK + R+LPEPL
Sbjct: 13  KNGLNTEGIFRVSGSASKIEELKKKF--DRGEDIDDLEDYDVHDVASLLKLYLRELPEPL 70

Query: 62  LSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
           +  EL+      A +E   E    + + LL+ L P +   ++ L+  L+ I +  + NKM
Sbjct: 71  IPFELYDEFIELAKIEDEEERIEAL-KELLKSLPPENRDLLKYLLKLLHKISQNSEVNKM 129

Query: 122 SVENLASIWGPTLMH 136
           +  NLA ++ PTL+ 
Sbjct: 130 TASNLAIVFAPTLLR 144

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score =  110 bits (277), Expect = 6e-31
 Identities = 59/134 (44%), Positives = 77/134 (57%), Gaps = 8/134 (5%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEPLLS 63
            EGIYR SG+ + V+KL   F +D   V L   +  E D+ +V   LK FFR+LPEPLL+
Sbjct: 34  LEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLT 93

Query: 64  TELHVHLCNAAGMECAT--EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
             L      AA +E  +   D +H    L+  L   +Y T+R LM HL  I+E +  N+M
Sbjct: 94  KALSREFIEAAKIEDESRRRDALH---GLINDLPDANYATLRALMFHLARIKEHESVNRM 150

Query: 122 SVENLASIWGPTLM 135
           SV NLA IWGPTLM
Sbjct: 151 SVNNLAIIWGPTLM 164

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 98.7 bits (246), Expect = 4e-26
 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 13/139 (9%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL----- 62
           +GIYR SGS   V KL   F      V LS   ++ HD+++VLK F ++LPEP+L     
Sbjct: 35  QGIYRISGSKARVEKLCQAFENGRDLVDLS--GHSPHDITSVLKHFLKELPEPVLPFQLY 92

Query: 63  ------STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK 116
                 + EL      AA      E+ +   + LL +L   +Y T+R LM HLY + E+ 
Sbjct: 93  DDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERF 152

Query: 117 DRNKMSVENLASIWGPTLM 135
           + NKMS  NL  ++GPTL+
Sbjct: 153 EDNKMSPNNLGIVFGPTLL 171

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 97.5 bits (243), Expect = 1e-25
 Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 15/141 (10%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
           +GIYR SGS   V KL   F      V+LS  + + HD+S+VLK F R LPEPL+   L+
Sbjct: 35  QGIYRVSGSKARVEKLCQAFENGKDLVELS--ELSPHDISSVLKLFLRQLPEPLILFRLY 92

Query: 68  VHL-------------CNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQE 114
                             A          +   + LL +L   +Y T++ L+ HLY + E
Sbjct: 93  NDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAE 152

Query: 115 KKDRNKMSVENLASIWGPTLM 135
           + + NKMS  NL  ++GPTL+
Sbjct: 153 QFEENKMSPNNLGIVFGPTLI 173

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 93.3 bits (232), Expect = 3e-24
 Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 2/133 (1%)

Query: 3   EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
            G  +EGIYR SG+ T++  L  +F QD   + L  + +T + V+  LK FF +LP+PL+
Sbjct: 29  TGLETEGIYRVSGNKTHLDSLQKQFDQDH-NLDLVSKDFTVNAVAGALKSFFSELPDPLI 87

Query: 63  STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
              +H+ L  AA +    + ++H  + LL+K  P ++   + ++ HL  + +    N M+
Sbjct: 88  PYSMHLELVEAAKINDREQ-RLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMT 146

Query: 123 VENLASIWGPTLM 135
            ENL+  + PTLM
Sbjct: 147 SENLSICFWPTLM 159

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 92.5 bits (230), Expect = 7e-24
 Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 3/132 (2%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EGIYR+SGS   + +L      D   V L  E Y  H +++VLK++ R+LPEPL++
Sbjct: 30  GLYTEGIYRKSGSANKIKELRQGLDTDPDSVNL--EDYPIHVITSVLKQWLRELPEPLMT 87

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            EL+ +   A  +E   E    +Y S+LE+L   +  T+ +L+ HL  +  +++ N+MS 
Sbjct: 88  FELYENFLRAMELEEKQERVRALY-SVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSA 146

Query: 124 ENLASIWGPTLM 135
             LA ++ P ++
Sbjct: 147 NALAIVFAPCIL 158

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 9   GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTELH 67
           GIYR  G+   +S L  E  +  + + L   ++ + + VS++LK FFR LPEPL + EL+
Sbjct: 38  GIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELY 97

Query: 68  VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
                A  +E   E ++   R L+  L   HY T++ L+ HL  + +  + NKM   NLA
Sbjct: 98  PDFIEANRIEDPVE-RLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLA 156

Query: 128 SIWGPTLMHVENWTTVIVVT 147
            ++GPTL+   +     +VT
Sbjct: 157 IVFGPTLVRTSDDNMETMVT 176

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 89.1 bits (221), Expect = 2e-22
 Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 4/130 (3%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE--HDVSTVLKRFFRDLPEPLLSTE 65
           +GIYR SG  +N+ +L  EF  +     L+++ Y +  H VS++ K +FR+LP PLL+ +
Sbjct: 36  DGIYRLSGIASNIQRLRHEFDSEQ-IPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQ 94

Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
           L+     A       E+++     ++++L P HY T+  LM HL  + +      M  +N
Sbjct: 95  LYEKFSEAVSAASD-EERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKN 153

Query: 126 LASIWGPTLM 135
           LA +W P L+
Sbjct: 154 LAIVWAPNLL 163

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 83.2 bits (206), Expect = 2e-20
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 6   MSEGIYRRSGSTTNVSKLLAEFRQDAWQVQL--SREQYTEHDVSTVLKRFFRDLPEPLLS 63
             EGI+R SGS + + +L   F    + V L  S      H V+ +LK + R+LP  +L 
Sbjct: 40  YEEGIFRLSGSASVIKQLKERF-NTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILG 98

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            ELH               +    + L+ +L   +Y  +  L   L  I E  D NKM++
Sbjct: 99  GELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNL 158

Query: 124 ENLASIWGPTL 134
            N+  ++ PTL
Sbjct: 159 RNVCIVFSPTL 169

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 82.8 bits (205), Expect = 3e-20
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
            +GIYR SG+   + KL      D        +    H ++  LK FFR+LPEPL    L
Sbjct: 34  VDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSL 93

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
                 A  +    E +V   + L++ L   ++ T++ L  HL  + E  ++N+M+ +NL
Sbjct: 94  FNDFVAAIKLSDY-EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNL 152

Query: 127 ASIWGPTLMHVENWTTVIVV-TYYQ 150
           A ++GPTL+  E  T  I V   YQ
Sbjct: 153 AIVFGPTLLRPEQETGNIAVHMVYQ 177

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 23/141 (16%)

Query: 8   EGIYRRSGSTTNVSKLLA-------------EFRQDAWQVQLSREQYTEHDVSTVLKRFF 54
           +G+YR  G  + V KLL+             +     W+++          +++ LK + 
Sbjct: 47  QGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIK---------TITSALKTYL 97

Query: 55  RDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQE 114
           R+LPEPL++ ELH    NAA  E   E +V+   SL+ KL   +   +  L+ HL  + +
Sbjct: 98  RNLPEPLMTYELHNDFINAAKSENL-ESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSD 156

Query: 115 KKDRNKMSVENLASIWGPTLM 135
              +N M+V NL  ++GPTL+
Sbjct: 157 HSKKNLMTVSNLGVVFGPTLL 177

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 79.7 bits (196), Expect = 6e-19
 Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EGIYR+SGST  + +L      DA  V L  + Y  H +++V K++ RDLP PL++
Sbjct: 30  GLYTEGIYRKSGSTNKIKELRQGLDTDANSVNL--DDYNIHVIASVFKQWLRDLPNPLMT 87

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            EL+     A G++   E    +Y S++++L   H  T+ +L+ HL  I  +++ N+MS 
Sbjct: 88  FELYEEFLRAMGLQERRETVRGVY-SVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSA 146

Query: 124 ENLASIWGPTLMHVENWT 141
             LA ++ P ++   + T
Sbjct: 147 NALAIVFAPCILRCPDTT 164

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 79.8 bits (197), Expect = 6e-19
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 15/141 (10%)

Query: 9   GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHV 68
           GI+R   S   V +L  EF +    V L     + HDV+ +LK FFRD+P+PLL  EL+ 
Sbjct: 29  GIFRVGSSKKRVRQLREEFDR-GIDVVLDENH-SVHDVAALLKEFFRDMPDPLLPRELYT 86

Query: 69  HLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEK-KDR--------- 118
                A +E   ++++   + L+  L P +  T+ +L+  L+ + E   D          
Sbjct: 87  AFIGTALLE--PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVS 144

Query: 119 -NKMSVENLASIWGPTLMHVE 138
            NKM+  NLA+I+GP L+H +
Sbjct: 145 GNKMTSLNLATIFGPNLLHKQ 165

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 79.1 bits (195), Expect = 1e-18
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEPLL 62
           G  SEG+YR SG    +  +   F +D  +  +S   Y + +V T  LK +FRDLP P++
Sbjct: 31  GLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVI 90

Query: 63  STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
           + + +    +AA +    E ++      L  L P HY T+R LM HL  +   +  NKM+
Sbjct: 91  TYDTYPKFIDAAKISNPDE-RLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMN 149

Query: 123 VENLASIWGPTLM 135
            ENL  ++GPTLM
Sbjct: 150 AENLGIVFGPTLM 162

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G    GIYR SG  T++  L A F  +   V +   +   + ++  LK +FR+LPEPL +
Sbjct: 31  GMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFT 90

Query: 64  TELHVHLCNAAGME--CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
            EL+ +      +    A E  +    +LL  L   + VT   L+ HL  + E+++ NKM
Sbjct: 91  DELYPNFAEGIALSDPVAKESCM---LNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKM 147

Query: 122 SVENLASIWGPTLM 135
           S+ NLA+++GPTL+
Sbjct: 148 SLHNLATVFGPTLL 161

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 7/133 (5%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
           +EG++R+SGS     +L A+        +         DV+ +LK+FFR+LPEPLL  +L
Sbjct: 37  TEGLFRKSGSVVRQKELKAKLEGG----EACLSSALPCDVAGLLKQFFRELPEPLLPYDL 92

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYV-TVRKLMGHLYFIQEKKDRNKMSVEN 125
           H  L  A  +    E K      LL  L P  +V T+R     LY + ++   NKM   N
Sbjct: 93  HEALLKAQELPTDEERKSATL--LLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSN 150

Query: 126 LASIWGPTLMHVE 138
           LA I+ P L   E
Sbjct: 151 LAVIFAPNLFQSE 163

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 75.2 bits (185), Expect = 5e-17
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 23/149 (15%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
           +GIYR +G+ + V KL   F      V+LS  + + HD+S VLK + R LPEPL+   L+
Sbjct: 35  KGIYRVNGAKSRVEKLCQAFENGKDLVELS--ELSPHDISNVLKLYLRQLPEPLILFRLY 92

Query: 68  VHLCNAA---------------------GMECATEDKVHIYRSLLEKLHPIHYVTVRKLM 106
                 A                      M       +   + LL +L   +Y T++ L+
Sbjct: 93  NEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLI 152

Query: 107 GHLYFIQEKKDRNKMSVENLASIWGPTLM 135
            HL+ + E+ + NKMS  NL  I+GPTL+
Sbjct: 153 VHLHRVSEQAEENKMSASNLGIIFGPTLI 181

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 74.8 bits (184), Expect = 5e-17
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE--HDVSTVLKRFFRDLPEPL 61
           G   EG++R  G  + + +L A    DA    L  +++    H V++ LK + R+LP+PL
Sbjct: 35  GMNEEGLFRVGGGASKLKRLKAAL--DAGTFSLPLDEFYSDPHAVASALKSYLRELPDPL 92

Query: 62  LSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
           L+  L+     AA      E    I+R +L KL   +   +R L+  L  + +K D NKM
Sbjct: 93  LTYNLYEDWVQAANKPDEDERLQAIWR-ILNKLPRENRDNLRYLIKFLSKLAQKSDENKM 151

Query: 122 SVENLASIWGPTLM 135
           S  N+A +  P L+
Sbjct: 152 SPSNIAIVLAPNLL 165

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 5/131 (3%)

Query: 9   GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEPLLSTELH 67
           G+YR  GS     +L   F +++  V+LS E Y + +V T VLK + R+LPEPL++ +L+
Sbjct: 38  GLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLY 97

Query: 68  VHLCNAAGMECATEDKV---HIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
             +  A  +     D     H+  S+++ L      T+  L+ HL  +    +RNKM+ +
Sbjct: 98  EMVLEALAV-ALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQ 156

Query: 125 NLASIWGPTLM 135
           NLA  +GP LM
Sbjct: 157 NLAVCFGPVLM 167

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 14/140 (10%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
           EG++R+ G++    +L          + L    +  HD +TVLK F  +LPEPLL T  H
Sbjct: 27  EGLFRKPGNSARQQELRDLLNSGT-DLDLESGGFHAHDCATVLKGFLGELPEPLL-THAH 84

Query: 68  VH-------LCNA--AGMECATEDKVHIYRS---LLEKLHPIHYVTVRKLMGHLYFIQEK 115
                    LC     G + +  DK  +  +   LL  L   +   ++ ++  LY   + 
Sbjct: 85  YPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKH 144

Query: 116 KDRNKMSVENLASIWGPTLM 135
           +D+NKMS +NLA ++ P L+
Sbjct: 145 EDKNKMSADNLALLFTPHLI 164

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEP 60
           G   EG+YR SGS   V  L  +F +      LS+      D+  +   LK F R L EP
Sbjct: 32  GLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSK-----VDIHVICGCLKDFLRSLKEP 86

Query: 61  LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
           L++  L      AA +      +  +Y+++ E L   +  T+  L+ HL  + +     K
Sbjct: 87  LITFALWKEFMEAAEILDEDNSRAALYQAISE-LPQPNRDTLAFLILHLQRVAQSP-ECK 144

Query: 121 MSVENLASIWGPTLM 135
           M + NLA ++GPT++
Sbjct: 145 MDINNLARVFGPTIV 159

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 71.6 bits (176), Expect = 6e-16
 Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 6/129 (4%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTEL 66
           EGI+RRS +T  V ++  ++        +  +QY + H  + +LK F R+LPEPLL+ +L
Sbjct: 42  EGIFRRSANTQVVKEVQQKYNMG---EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDL 98

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
           +  +     ++   E++V   + LL+ L   +Y  ++ L+  L  +    D+NKM+  NL
Sbjct: 99  YDDIVGFLNVD--KEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNL 156

Query: 127 ASIWGPTLM 135
           A ++GP L+
Sbjct: 157 AVVFGPNLL 165

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHD---VSTVLKRFFRDLPEPLLST 64
           +GI+R SGS   V+ +   F +   +  L+ +Q  +HD   V+ VLK +FR L  PL   
Sbjct: 37  QGIFRVSGSQVEVNDIKNAFERG--EDPLADDQ-NDHDINSVAGVLKLYFRGLENPLFPK 93

Query: 65  ELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
           E    L +   +E  TE +VH  R +L  L     + +R L   L  + +  D N M   
Sbjct: 94  ERFEDLMSCVKLENPTE-RVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPY 152

Query: 125 NLASIWGPTLMHVEN 139
           NLA  +GPTLM V  
Sbjct: 153 NLAICFGPTLMPVPE 167

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 68.9 bits (169), Expect = 6e-15
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 3   EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
           +G  +EGI+RRS +     K L E      +V L  E      +++VLK F R++P  LL
Sbjct: 29  KGPSTEGIFRRSANAKAC-KELKEKLNSGVEVDLKAE--PVLLLASVLKDFLRNIPGSLL 85

Query: 63  STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
           S++L+    +A   E   E+K+   + LL+KL   + + ++ L+  L+ I +  + NKM 
Sbjct: 86  SSDLYEEWMSALDQE-NEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMD 144

Query: 123 VENLASIWGPTLMH 136
             NLA    P+L+ 
Sbjct: 145 AFNLAVCIAPSLLW 158

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 3/132 (2%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EGIYR+SGS   + +L    + D   V+L  E Y  H ++ +LK++ R+LPEPL++
Sbjct: 30  GLYTEGIYRKSGSANRMKELHQLLQADPENVKL--ENYPIHAITGLLKQWLRELPEPLMT 87

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
              +     A  +    E    IYR +LE+L   ++ T+ +L+ HL  +  ++D N+MS 
Sbjct: 88  FAQYNDFLRAVELPEKQEQLQAIYR-VLEQLPTANHNTLERLIFHLVKVALEEDVNRMSP 146

Query: 124 ENLASIWGPTLM 135
             LA ++ P L+
Sbjct: 147 NALAIVFAPCLL 158

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EGI R  GS   V  L  E     ++     +Q  +HD +++LK F R+LP+PLL+
Sbjct: 37  GLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLT 96

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            E ++    +     + +D++     L+  L   +  T++ L+  L  + + +++NKM++
Sbjct: 97  VE-YLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNL 155

Query: 124 ENLASIWGPTL 134
            N+A I  P L
Sbjct: 156 WNVAMIMAPNL 166

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 37/127 (29%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
           EGIY+ SG  + V +L A + +       + E+Y    V+++LK++ R+LPEPLL+ EL 
Sbjct: 39  EGIYKVSGIKSKVDELKAAYNRRE---SPNLEEYEPPTVASLLKQYLRELPEPLLTKELM 95

Query: 68  VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
                A G     E +  + R LL++L   + + +  L+ H+  +  ++   KM+++N++
Sbjct: 96  PRFEEACGRPTEAEREQELQR-LLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNIS 154

Query: 128 SIWGPTL 134
            +  PT+
Sbjct: 155 IVLSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G   EG++R +G+   V  L         +V LS+E       +++L+ F ++LPE L+ 
Sbjct: 35  GLEQEGLFRVNGNAETVEWLRQRL-DSGEEVDLSKEA-DVCSAASLLRLFLQELPEGLIP 92

Query: 64  TELHVHL------CNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKD 117
             L + L       N               R LL++L P++Y  ++ L   L  +  +  
Sbjct: 93  ASLQIRLMQLYQDYNGEDEFGRK------LRDLLQQLPPVNYSLLKFLCHFLSNVASQHH 146

Query: 118 RNKMSVENLASIWGPTLMHV 137
            N+M+ ENLA+++GP + HV
Sbjct: 147 ENRMTAENLAAVFGPDVFHV 166

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQ-DAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
            +  EGI+R +GS+  + +L   F     +      + YT HD ++VL+R+  +LPEPL+
Sbjct: 47  ATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLV 106

Query: 63  STELH-------------VHLCNAAGMECATEDK---VHIYRSLLEKLHPIHYVTVRKLM 106
             +L+             +        E    D    +  YR L+ +L  ++   +  L+
Sbjct: 107 PLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLL 166

Query: 107 GHLYFIQEKKDRNKMSVENLASIWGPTLM 135
             L       D+N M+  NLA+I+ P ++
Sbjct: 167 DLLAVFARNSDKNLMTASNLAAIFQPGIL 195

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 3/133 (2%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G   EG++R  G    V +L   F  DA +          H V+++LK + R+LPEP++ 
Sbjct: 37  GLKEEGLFRLPGQANLVKQLQDAF--DAGERPSFDSDTDVHTVASLLKLYLRELPEPVIP 94

Query: 64  TELHVHLCNAAGMECATEDKVHI-YRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
              +    + A +    E+K        +  L  ++Y  +  +   L  +Q     NKMS
Sbjct: 95  WAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMS 154

Query: 123 VENLASIWGPTLM 135
           V+NLA+++GP ++
Sbjct: 155 VQNLATVFGPNIL 167

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQ----DAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
           S  +YR     T  S  L E RQ    DA  V L  EQ+    ++  LKR+  DLP P++
Sbjct: 33  SSTLYR-----TQSSSSLTELRQILDCDAASVDL--EQFDVAALADALKRYLLDLPNPVI 85

Query: 63  STELHVHLCNAAGMECATEDKVHIYRSLLEKLH-PIHY-VTVRKLMGHLYFIQEKKDRNK 120
              ++  + + A    ++++   + R L+   + P  Y +T++ L+ H + + +   +N 
Sbjct: 86  PAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNL 145

Query: 121 MSVENLASIWGPTLM 135
           +S   LA I+ P L 
Sbjct: 146 LSARALAEIFSPLLF 160

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 40/148 (27%), Positives = 80/148 (54%), Gaps = 14/148 (9%)

Query: 1   MSEGSMS-EGIYRRSGSTTNVSKLLAEFRQDAWQVQ-LSREQYTEHDVSTVLKRFFRDLP 58
           M +  MS EG++R++G+   + +L  E  ++  +V  LS+E      ++ +LK+F R+LP
Sbjct: 38  MRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKE--NPVQLAALLKKFLRELP 95

Query: 59  EPLLSTELHVHLCNAAGMECATEDK--VHIYRSLLEKLHPIHYVTVRKLMGHLYFIQ--- 113
           +PLL+ +L+    ++  +E   E K  +H+   LL K    H  T+  L   L ++    
Sbjct: 96  DPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKY---HRDTMEVLFSFLKWVSSFS 152

Query: 114 --EKKDRNKMSVENLASIWGPTLMHVEN 139
             +++  +KM + NLA++  P +++ + 
Sbjct: 153 HIDEETGSKMDIHNLATVITPNILYSKT 180

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 31/142 (21%)

Query: 9   GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHV 68
           G++R+SG  + + KL +        V    +    +DV+ +LK++FRDLPEPLL+ +L  
Sbjct: 40  GLFRKSGVKSRIQKLRSMIESSTDNVNY--DGQQAYDVADMLKQYFRDLPEPLLTNKL-- 95

Query: 69  HLCNAAGMECATEDKVHIYRSLLEK-----------LHPIHYVTVRKLMGHLYF---IQE 114
                      +E  + I++ + ++           L P     V + +  LYF   +  
Sbjct: 96  -----------SETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTL--LYFLSDVAA 142

Query: 115 KKDRNKMSVENLASIWGPTLMH 136
               N+M+  NLA    P+L H
Sbjct: 143 NSQENQMTATNLAVCLAPSLFH 164

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEP 60
           G  +EGI+R  G    V++L  + R D W   LS       D       LK + R+L EP
Sbjct: 37  GFQTEGIFRVPGDIDEVNEL--KLRVDQWDYPLS----GLEDPHVPASLLKLWLRELEEP 90

Query: 61  LLSTELHVHLCNAAGMEC--ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLY-FIQEKK- 116
           L+   L+         +C  A+ED       +++KL  I+ + +  L+  L  F Q +  
Sbjct: 91  LIPDALY--------QQCISASEDPDKAVE-IVQKLPIINRLVLCYLINFLQVFAQPENV 141

Query: 117 DRNKMSVENLASIWGP 132
              KM V NLA ++ P
Sbjct: 142 AHTKMDVSNLAMVFAP 157

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQ--DAWQVQLSREQYTEHDVSTVLKRFFRDLPE 59
           + G   EG++   G  +   +LLAE R   D      S        V+  L  F   LP+
Sbjct: 63  TRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFNSPGSA--ESVAEALLLFLESLPD 120

Query: 60  PLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRN 119
           P++   L+  L     +E    ++    + +   L P+H      L   L  +  +    
Sbjct: 121 PIIPYSLYERL-----LEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADR 175

Query: 120 KMSVENLASIWGPTLMH 136
            +    LA+I+G  L+ 
Sbjct: 176 GLDENTLATIFGRVLLR 192

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	100.0
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	100.0
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	100.0
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	100.0
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	100.0
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	100.0
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	100.0
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	100.0
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	100.0
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	100.0
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	100.0
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	100.0
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	100.0
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	100.0
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	100.0
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	100.0
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	100.0
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	100.0
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	100.0
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	100.0
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	100.0
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	100.0
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	100.0
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	100.0
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.97
KOG4269|consensus	1112		99.97
KOG4270|consensus	577		99.96
KOG2200|consensus	674		99.96
KOG4407|consensus	1973		99.96
KOG1451|consensus	812		99.95
KOG1450|consensus	650		99.94
KOG3564|consensus	604		99.94
KOG2710|consensus	412		99.93
KOG1117|consensus	1186		99.91
KOG4406|consensus	467		99.91
KOG1453|consensus	918		99.9
KOG1452|consensus	442		99.8
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.74
KOG4271|consensus	1100		99.71
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.69
KOG4724|consensus	741		99.64
KOG4370|consensus	514		99.53
KOG3565|consensus	640		99.12
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	98.6
KOG4724|consensus	741		97.51
KOG1453|consensus	918		96.76
KOG4271|consensus	1100		96.22
KOG1449|consensus	670		95.12
KOG1449|consensus	670		85.2

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=100.00  E-value=1.4e-39  Score=249.56  Aligned_cols=149  Identities=25%  Similarity=0.422  Sum_probs=140.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+..+++++++.+++|..   .+.+++|+|++|++||.|||+||+||+|.++|+.|.++.+. .+..
T Consensus        33 ~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~---~~~~~~d~h~va~lLK~fLReLP~pLi~~~~~~~~~~~~~~-~~~~  108 (182)
T cd04381          33 KHGMKCEGIYKVSGIKSKVDELKAAYNRRES---PNLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGR-PTEA  108 (182)
T ss_pred             HhCCCCCceeecCCcHHHHHHHHHHHcCCCC---CCccccChHHHHHHHHHHHHhCCCccCCHHHHHHHHHHcCC-CCHH
Confidence            4699999999999999999999999999873   33457899999999999999999999999999999998887 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHHHHHHhhhhcCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGP  154 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~  154 (183)
                      +++..++.++.+||+.|+.+|++|+.||.+|+.|++.||||++|||+||||+|+.+.+....+++||+.+|+.
T Consensus       109 ~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~~~li~~~~~if~~  181 (182)
T cd04381         109 EREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQISNRLLYALLTHCQELFGN  181 (182)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccCcHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=7e-39  Score=247.96  Aligned_cols=138  Identities=32%  Similarity=0.522  Sum_probs=126.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+.+|||||++|+..+++++++.+++++...+++...+ |+|++|++||.|||+||+||+|.+.|+.|+++.+. .+.
T Consensus        29 ~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~~~~~~~~~~~~-~~~  107 (194)
T cd04372          29 ARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKI-SNP  107 (194)
T ss_pred             HcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCH
Confidence            5899999999999999999999999998654445443333 89999999999999999999999999999999887 788


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ++++..++.++.+||+.|+.+|.+|+.||++|+.+++.||||+.|||+||||+|+++++.
T Consensus       108 ~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~  167 (194)
T cd04372         108 DERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPED  167 (194)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCCc
Confidence            899999999999999999999999999999999999999999999999999999999754

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=100.00  E-value=3.6e-38  Score=246.09  Aligned_cols=154  Identities=25%  Similarity=0.383  Sum_probs=134.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc-----
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM-----   76 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~-----   76 (183)
                      ++|+.+|||||++|+..+++++++.+++|. ..++....+|+|++|++||.|||+||+||+|.+.|+.|+.+++.     
T Consensus        21 ~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~-~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~y~~~~~i~~l~~~~~   99 (208)
T cd04392          21 EKNLRVEGLFRKPGNSARQQELRDLLNSGT-DLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDE   99 (208)
T ss_pred             HhCCCCcceeeCCCcHHHHHHHHHHHHcCC-CCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhhcccc
Confidence            469999999999999999999999999986 34444456799999999999999999999999999999876641     


Q ss_pred             ------CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh----------
Q psy9944          77 ------ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW----------  140 (183)
Q Consensus        77 ------~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~----------  140 (183)
                            ..+.+.++..++.++.+||+.||.+|++|+.||++|++|++.||||+.|||+||||+|++|++.          
T Consensus       100 ~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~  179 (208)
T cd04392         100 KGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLTPEDLHENAQ  179 (208)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCCCCHHHHHHHHH
Confidence                  1355677899999999999999999999999999999999999999999999999999998632          


Q ss_pred             -----hHHHHHHhhhhcCCCC
Q psy9944         141 -----TTVIVVTYYQVKGPSS  156 (183)
Q Consensus       141 -----~~~~~~~~~~~f~~~~  156 (183)
                           .+.++++|..+|..+.
T Consensus       180 ~~~~iv~~lI~~~~~iF~~~~  200 (208)
T cd04392         180 KLNSIVTFMIKHSQKLFKAPA  200 (208)
T ss_pred             HHHHHHHHHHHHHHHHcCCcH
Confidence                 2456688888888754

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=3.6e-38  Score=242.74  Aligned_cols=139  Identities=29%  Similarity=0.406  Sum_probs=127.0

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+..+++++++.+++|.+......+.+|+|++|++||.|||+||+||+|.+.|+.|+++.+. .+..
T Consensus        31 ~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPepLip~~~~~~~~~~~~~-~~~~  109 (188)
T cd04383          31 LYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVKL-ENPT  109 (188)
T ss_pred             HcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCHH
Confidence            479999999999999999999999999987432222345699999999999999999999999999999999887 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      +++..++.++.+||+.|+.+|++|+.||++|++|++.||||++|||+||||+|++.++..
T Consensus       110 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~~  169 (188)
T cd04383         110 ERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQ  169 (188)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeccccCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999976543

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=5.9e-38  Score=242.84  Aligned_cols=137  Identities=32%  Similarity=0.492  Sum_probs=126.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.++++........+..|+|++|++||.|||+||+||+|.++|+.|.++.+. .++.
T Consensus        29 ~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPePLip~~~y~~~~~~~~~-~~~~  107 (196)
T cd04387          29 RRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIAL-SDPV  107 (196)
T ss_pred             HhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHc-CCHH
Confidence            479999999999999999999999999986433333446799999999999999999999999999999999887 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN  139 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~  139 (183)
                      .+...++.++.+||+.|+.+|.+|+.||++|+++++.||||+.|||+||||+|++++.
T Consensus       108 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~  165 (196)
T cd04387         108 AKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSE  165 (196)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccccCCCCc
Confidence            8999999999999999999999999999999999999999999999999999999963

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=100.00  E-value=1.1e-37  Score=240.64  Aligned_cols=151  Identities=25%  Similarity=0.348  Sum_probs=138.6

Q ss_pred             CC-CCCCCccccCCCHHHHHHHHHHHhccCccccCC--cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944           3 EG-SMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS--REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA   79 (183)
Q Consensus         3 ~g-l~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~--~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~   79 (183)
                      +| +.+|||||++|+..+++++++.++++.. .++.  .+.+|+|++|++||.|||+||+||+|.++|+.|..+.+...+
T Consensus        36 ~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~-~~~~~~~~~~d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~  114 (190)
T cd04400          36 NRAIYEEGIFRLSGSASVIKQLKERFNTEYD-VDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHD  114 (190)
T ss_pred             cCCcCCCCeeeCCCcHHHHHHHHHHHcCCCC-CCccccccccCHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCC
Confidence            45 7999999999999999999999999852 2221  235699999999999999999999999999999998877448


Q ss_pred             HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHHHHHHhhhhcCC
Q psy9944          80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGP  154 (183)
Q Consensus        80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~  154 (183)
                      ..+++..++.++.+||+.|+.+|++|+.||++|+.|++.|+||++|||+||||+|++|.+....++.+|+.+|+.
T Consensus       115 ~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~~~~~~~~~~~~~~~~f~~  189 (190)
T cd04400         115 RSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNIPAGIFVLFLTDFDCIFGG  189 (190)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHhhhhcCCCCCCCHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999974

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=100.00  E-value=8.5e-38  Score=240.63  Aligned_cols=139  Identities=32%  Similarity=0.481  Sum_probs=127.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCC-cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS-REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~-~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+...+++++..+|.+.. .++. .+..|+|++|++||.|||+||+||+|.+.|+.|+++.+. .+.
T Consensus        29 ~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~-~~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~~~~~~~~~~~-~~~  106 (187)
T cd04403          29 KRGLDVDGIYRVSGNLAVIQKLRFAVDHDEK-LDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKL-SDY  106 (187)
T ss_pred             HhCCCcCceeeecCcHHHHHHHHHHhcCCCC-CCccccccccHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHC-CCH
Confidence            4799999999999999999999999999763 2222 234599999999999999999999999999999999887 788


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT  142 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~  142 (183)
                      ++++..++.++.+||+.|+.+|++|+.||++|+.+++.||||+.|||+||||+|+|++..+.
T Consensus       107 ~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~~  168 (187)
T cd04403         107 EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQETG  168 (187)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccccCCCCcch
Confidence            89999999999999999999999999999999999999999999999999999999986654

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=1.1e-37  Score=239.60  Aligned_cols=135  Identities=29%  Similarity=0.487  Sum_probs=125.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.++.|....  ..+.+|+|++|++||+|||+||+||+|.+.|+.|+.+... .+..
T Consensus        28 ~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~--~~~~~d~h~va~lLK~flReLPepLi~~~~~~~~~~~~~~-~~~~  104 (186)
T cd04407          28 MHGLYTEGIYRKSGSANRMKELHQLLQADPENV--KLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVEL-PEKQ  104 (186)
T ss_pred             HcCCCCCceeecCCCHHHHHHHHHHHhcCCccc--CcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHC-CCHH
Confidence            579999999999999999999999999886333  3357799999999999999999999999999999998877 6778


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN  139 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~  139 (183)
                      +++..++.++.+||+.|+.+|.+|+.||++|+.+++.||||+.|||+||||+|+|+++
T Consensus       105 ~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~  162 (186)
T cd04407         105 EQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPD  162 (186)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccCCCC
Confidence            8899999999999999999999999999999999999999999999999999999764

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=100.00  E-value=1.4e-37  Score=244.27  Aligned_cols=154  Identities=25%  Similarity=0.374  Sum_probs=136.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+.++++++++.++++.+.....++.+|+|++|++||+|||+||+||+|.+.|+.|..+.+. .+..
T Consensus        35 ~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~-~~~~  113 (216)
T cd04391          35 ERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGL-PSKK  113 (216)
T ss_pred             HcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CCHH
Confidence            579999999999999999999999999875333455567899999999999999999999999999999998876 6778


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh---------------------
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW---------------------  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~---------------------  140 (183)
                      +++.+++.++.+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||+|+++...                     
T Consensus       114 ~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  193 (216)
T cd04391         114 DQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANI  193 (216)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHHHhccccCCCCCCCCCcchhHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999998421                     


Q ss_pred             hHHHHHHhhhhcCCCC
Q psy9944         141 TTVIVVTYYQVKGPSS  156 (183)
Q Consensus       141 ~~~~~~~~~~~f~~~~  156 (183)
                      .+.+++++..+|.-++
T Consensus       194 v~~lI~~~~~if~~p~  209 (216)
T cd04391         194 MRLLIRYQDLLWTVPS  209 (216)
T ss_pred             HHHHHHhHHHHhcCCH
Confidence            1234677888887654

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=100.00  E-value=2.3e-37  Score=241.04  Aligned_cols=152  Identities=26%  Similarity=0.390  Sum_probs=135.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.+++|....+.....+|+|++|++||.|||+||+||+|.+.|+.|+.+.+. .+.+
T Consensus        33 ~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~-~~~~  111 (203)
T cd04386          33 ETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANK-PDED  111 (203)
T ss_pred             HcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcc-CCHH
Confidence            579999999999999999999999999987544333345699999999999999999999999999999999887 6778


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh-----------------HHH
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT-----------------TVI  144 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~-----------------~~~  144 (183)
                      ++...++.++.+||+.|+.+|++|+.||++|++|++.|+|+++|||+||||+|++++...                 +.+
T Consensus       112 ~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~L  191 (203)
T cd04386         112 ERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELI  191 (203)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999986432                 245


Q ss_pred             HHHhhhhcCC
Q psy9944         145 VVTYYQVKGP  154 (183)
Q Consensus       145 ~~~~~~~f~~  154 (183)
                      +++|..+|..
T Consensus       192 I~~~~~iF~~  201 (203)
T cd04386         192 ISHADWFFPG  201 (203)
T ss_pred             HHhHHHhCCC
Confidence            5777777765

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=100.00  E-value=4.4e-37  Score=239.67  Aligned_cols=151  Identities=32%  Similarity=0.498  Sum_probs=134.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+..+++++++.+++|.. ..+. +.+|+|++|++||.|||+||+||+|.++|+.|+.+.+.  +.+
T Consensus        22 ~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~-~~~~~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~--~~~   97 (206)
T cd04376          22 KHGLQTVGIFRVGSSKKRVRQLREEFDRGID-VVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALL--EPD   97 (206)
T ss_pred             HcCCCCCceeeCCCCHHHHHHHHHHHhcCCC-CCCc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC--CHH
Confidence            4799999999999999999999999999873 2332 35699999999999999999999999999999998885  477


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcc-----------cCCCCchhhhHhhccccCCCCCh----------
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKD-----------RNKMSVENLASIWGPTLMHVENW----------  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~-----------~nkM~~~nLa~~f~P~L~~~~~~----------  140 (183)
                      +++..++.++.+||+.||.+|++|+.||++|+.|++           .||||++|||+||||+|+|++..          
T Consensus        98 ~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~  177 (206)
T cd04376          98 EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKSGEREFVQASL  177 (206)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCCCCcccccchhhh
Confidence            889999999999999999999999999999999986           79999999999999999999632          


Q ss_pred             -----------hHHHHHHhhhhcCCCC
Q psy9944         141 -----------TTVIVVTYYQVKGPSS  156 (183)
Q Consensus       141 -----------~~~~~~~~~~~f~~~~  156 (183)
                                 .+.++++|..+|..++
T Consensus       178 ~~~~~~~~~~vv~~LI~~~~~iF~~~~  204 (206)
T cd04376         178 RIEESTAIINVVQTMIDNYEELFMVSP  204 (206)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence                       2456688888888765

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=3.8e-37  Score=237.81  Aligned_cols=134  Identities=24%  Similarity=0.437  Sum_probs=121.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+.. +.++++.++++....  +++.+|+|++|++||+|||+||+||+|.+.|+.|+++++...+.+
T Consensus        28 ~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~--d~~~~dv~~va~~LK~ylReLPePLip~~~y~~fi~~~~~~~~~~  104 (200)
T cd04388          28 KKGLESSTLYRTQSSSS-LTELRQILDCDAASV--DLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSD  104 (200)
T ss_pred             HhCCCCCceeeCCCccH-HHHHHHHHhcCCCCC--CcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHccCCHH
Confidence            48999999999999775 678999999865334  445789999999999999999999999999999999886546788


Q ss_pred             HHHHHHHHHHH--hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC
Q psy9944          82 DKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE  138 (183)
Q Consensus        82 ~~~~~l~~ll~--~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~  138 (183)
                      +++..++.++.  .||+.|+.||+||+.||.+|++|+..|+||++|||+||||+|+|++
T Consensus       105 ~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~  163 (200)
T cd04388         105 EYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ  163 (200)
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence            89999999997  8999999999999999999999999999999999999999999996

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=2.4e-37  Score=237.74  Aligned_cols=136  Identities=32%  Similarity=0.537  Sum_probs=125.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.++.+....  ..+.+|+|++|++||.|||+||+||+|.++|+.|.++.+. .+..
T Consensus        28 ~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~--~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~-~~~~  104 (186)
T cd04406          28 MHGLYTEGIYRKSGSTNKIKELRQGLDTDANSV--NLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGL-QERR  104 (186)
T ss_pred             HhCCCCCceeeCCCcHHHHHHHHHHHccCCCCC--CcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-ccHH
Confidence            479999999999999999999999999875333  3456799999999999999999999999999999999887 6778


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      +++..++.++.+||+.|+.+|.+++.||.+|+.|++.||||++|||+||||+|+|+++.
T Consensus       105 ~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~~p~~  163 (186)
T cd04406         105 ETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDT  163 (186)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccCCCCC
Confidence            88999999999999999999999999999999999999999999999999999998654

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=100.00  E-value=4.2e-37  Score=238.94  Aligned_cols=137  Identities=24%  Similarity=0.385  Sum_probs=123.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc-CCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM-ECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~-~~~~   80 (183)
                      ++|+++|||||++|+..+++++++.+++|.. ..+. ..+|+|++|++||.|||+||+||+|.+.|+.|+.+.+. ..+.
T Consensus        35 ~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~-~~~~-~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~  112 (199)
T cd04390          35 EHGLKEEGLFRLPGQANLVKQLQDAFDAGER-PSFD-SDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDE  112 (199)
T ss_pred             HcCCCCCCeeeCCCCHHHHHHHHHHHhCCCC-CCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccH
Confidence            4799999999999999999999999999873 2232 35699999999999999999999999999999988764 2456


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ..+...++.++.+||+.|+.+|.+|+.||++|+.|++.||||++|||+||||+|+|++..
T Consensus       113 ~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~  172 (199)
T cd04390         113 EKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVE  172 (199)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCCCCCC
Confidence            778889999999999999999999999999999999999999999999999999999743

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=100.00  E-value=4e-37  Score=236.45  Aligned_cols=137  Identities=33%  Similarity=0.568  Sum_probs=127.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.++++. ..++....+|+|++|+++|+|||+||+||+|.++|+.|.++.+. .+..
T Consensus        28 ~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~va~~lK~fLreLPePlip~~~~~~~~~~~~~-~~~~  105 (185)
T cd04373          28 ATGLETEGIYRVSGNKTHLDSLQKQFDQDH-NLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKI-NDRE  105 (185)
T ss_pred             HcCCCCCCeeecCCcHHHHHHHHHHHhcCC-CCCcccccCcHHHHHHHHHHHHhcCCchhccHHHHHHHHHHHhC-CCHH
Confidence            479999999999999999999999999976 34444456799999999999999999999999999999999887 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      +++..++.++.+||+.||.+|.+++.||++|+++++.||||++|||+||||+|+||+..
T Consensus       106 ~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~  164 (185)
T cd04373         106 QRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFT  164 (185)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999998644

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=100.00  E-value=7.5e-37  Score=236.27  Aligned_cols=149  Identities=26%  Similarity=0.381  Sum_probs=135.0

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.+++|. ..+  ++.+|+|++|+++|+|||+||+||+|.+.|+.|..+.+. .+.+
T Consensus        28 ~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~-~~~--~~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~~-~~~~  103 (192)
T cd04402          28 QKGPSTEGIFRRSANAKACKELKEKLNSGV-EVD--LKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQ-ENEE  103 (192)
T ss_pred             HhCCCCCCeeeCCCcHHHHHHHHHHHhCCC-CCC--CccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcc-CCHH
Confidence            579999999999999999999999999986 223  357899999999999999999999999999999999887 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh--------------HHHHHH
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT--------------TVIVVT  147 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~--------------~~~~~~  147 (183)
                      .++..++.++.+||..|+.+|.+++.||++|+.+++.|+||++|||+||||+|++++...              +.++++
T Consensus       104 ~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~~~~~~~~~~~~~~~~~LI~~  183 (192)
T cd04402         104 EKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQNEDLKKVTSLVQFLIEN  183 (192)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCccHHHHHHHHhhhHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999998542              245567


Q ss_pred             hhhhcCC
Q psy9944         148 YYQVKGP  154 (183)
Q Consensus       148 ~~~~f~~  154 (183)
                      +.++|..
T Consensus       184 ~~~IF~~  190 (192)
T cd04402         184 CQEIFGE  190 (192)
T ss_pred             HHHhCCC
Confidence            7777765

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=100.00  E-value=7.4e-37  Score=237.72  Aligned_cols=139  Identities=32%  Similarity=0.523  Sum_probs=124.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHH-HhccC---ccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAE-FRQDA---WQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME   77 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~-~~~~~---~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~   77 (183)
                      ++|+.+|||||++|+..+++++++. ++.+.   ...++....+|+|++|++||+|||+||+||+|.++|+.|+.+.+. 
T Consensus        41 ~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~-  119 (203)
T cd04374          41 TRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFINAAKS-  119 (203)
T ss_pred             HcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhC-
Confidence            4799999999999999999999875 55541   122333225699999999999999999999999999999999987 


Q ss_pred             CCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          78 CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        78 ~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      .+.+.++..++.++.+||+.|+.+|++|+.||++|++|++.|||++.|||+||||+|+|++...
T Consensus       120 ~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~  183 (203)
T cd04374         120 ENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET  183 (203)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc
Confidence            7888999999999999999999999999999999999999999999999999999999997543

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=100.00  E-value=1e-36  Score=233.97  Aligned_cols=138  Identities=48%  Similarity=0.841  Sum_probs=128.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.++.+.....+.++.+|+|++|+++|.|||+||+||+|.+.|+.|+.+.+. .+.+
T Consensus        28 ~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreLP~pLi~~~~~~~~~~~~~~-~~~~  106 (184)
T cd04385          28 QHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSELHAEWIEAAEL-ENKD  106 (184)
T ss_pred             HhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-CCHH
Confidence            479999999999999999999999999875444444567899999999999999999999999999999999887 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      .++..++.++.+||+.|+.+|.+++.||++|+.|++.|||++.|||+||||+|+++++.
T Consensus       107 ~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~  165 (184)
T cd04385         107 ERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH  165 (184)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999854

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=6.9e-37  Score=236.36  Aligned_cols=135  Identities=27%  Similarity=0.382  Sum_probs=124.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.+++|....++  +.+|+|++|++||+|||+||+||+|.+.|+.|+++.+. .+.+
T Consensus        30 ~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~--~~~d~h~vaslLK~fLReLPePLi~~~~y~~~~~~~~~-~~~~  106 (193)
T cd04382          30 ARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNL--SKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEI-LDED  106 (193)
T ss_pred             HcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCccc--ccCCHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHc-CCHH
Confidence            57999999999999999999999999988633333  35599999999999999999999999999999999988 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      .++..++.++..||+.||.+|.+|+.||++|+. ++.||||+.|||+||||+|++++..
T Consensus       107 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~  164 (193)
T cd04382         107 NSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVP  164 (193)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCC
Confidence            899999999999999999999999999999999 9999999999999999999998644

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=100.00  E-value=1.3e-36  Score=238.41  Aligned_cols=153  Identities=19%  Similarity=0.323  Sum_probs=133.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.++++.... .+....++|++|++||+|||+||+||+|.++|+.|+.+.+. .+.+
T Consensus        40 ~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~d~~~~~~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~-~~~~  117 (213)
T cd04397          40 QMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEV-PDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKI-EDEE  117 (213)
T ss_pred             HcCCCcCCeeeecchHHHHHHHHHHHhcCCCcc-cccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CCHH
Confidence            479999999999999999999999999986322 22335699999999999999999999999999999999887 7788


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcc-----cCCCCchhhhHhhccccCCCCChh--------------H
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKD-----RNKMSVENLASIWGPTLMHVENWT--------------T  142 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~-----~nkM~~~nLa~~f~P~L~~~~~~~--------------~  142 (183)
                      ++...++.++..||+.||.+|++|+.||++|+.++.     .||||++|||+||||+|++++...              +
T Consensus       118 ~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vv~  197 (213)
T cd04397         118 ERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTDNPNTGDEYFLAIEAVN  197 (213)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCCCcchHHHHHHHHHHHH
Confidence            899999999999999999999999999999998764     599999999999999999996442              3


Q ss_pred             HHHHHhhhhcCCCC
Q psy9944         143 VIVVTYYQVKGPSS  156 (183)
Q Consensus       143 ~~~~~~~~~f~~~~  156 (183)
                      .++++|..+|+-+.
T Consensus       198 ~LI~n~~~if~vp~  211 (213)
T cd04397         198 YLIENNEEFCEVPD  211 (213)
T ss_pred             HHHHhHHHHhcCCC
Confidence            55677777776543

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=100.00  E-value=1.3e-36  Score=239.19  Aligned_cols=135  Identities=24%  Similarity=0.398  Sum_probs=124.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+..++++|++.++.+.....  .+.+++|++|++||+|||+||+||+|.++|+.|+++.+. .+.+
T Consensus        33 ~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~--~~~~~~~~va~lLK~flReLPePLlt~~l~~~fi~~~~~-~~~~  109 (220)
T cd04375          33 NNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVN--YDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQY-VPKE  109 (220)
T ss_pred             HhCCCccceeecCCcHHHHHHHHHHHhcCCCccC--cccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCHH
Confidence            4799999999999999999999999998753333  346799999999999999999999999999999998877 6778


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN  139 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~  139 (183)
                      +++++++.++..||+.||.+|++|+.||++|+.|++.||||++|||+||||+||++..
T Consensus       110 ~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~L~~~~~  167 (220)
T cd04375         110 QRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSLFHLNT  167 (220)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999853

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=8.7e-37  Score=237.18  Aligned_cols=139  Identities=35%  Similarity=0.516  Sum_probs=124.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC----
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME----   77 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~----   77 (183)
                      ++|+++|||||++|+..+++++++.+++|.+..++  ..+|+|++|++||+|||+||+||+|.+.|+.|+.+.+..    
T Consensus        29 ~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~--~~~~~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~  106 (200)
T cd04408          29 NRALGVQGIYRISGSKARVEKLCQAFENGRDLVDL--SGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDS  106 (200)
T ss_pred             HcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCc--ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccc
Confidence            47999999999999999999999999998744443  467999999999999999999999999999999876531    


Q ss_pred             -------CCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH
Q psy9944          78 -------CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT  142 (183)
Q Consensus        78 -------~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~  142 (183)
                             ....+++..++.++.+||+.||.+|.+|+.||++|+.+++.|||++.|||+||||+|++++....
T Consensus       107 ~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~  178 (200)
T cd04408         107 EKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGD  178 (200)
T ss_pred             cccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhccccCCCCCCCc
Confidence                   12457899999999999999999999999999999999999999999999999999999976543

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=100.00  E-value=8.6e-37  Score=236.31  Aligned_cols=137  Identities=31%  Similarity=0.544  Sum_probs=124.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCc--CCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR--EQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA   79 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~--~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~   79 (183)
                      ++|+ +|||||++|+..+++++++.+|+|.. .++..  ...|+|++|++||.|||+||+||+|.+.|+.|+++.+. .+
T Consensus        31 ~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~~d~h~va~lLK~flReLPePLi~~~~y~~~~~~~~~-~~  107 (195)
T cd04384          31 KHGI-VDGIYRLSGIASNIQRLRHEFDSEQI-PDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSA-AS  107 (195)
T ss_pred             HcCC-CcCeeeCCCCHHHHHHHHHHHcCCCC-CCcccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CC
Confidence            4688 69999999999999999999999863 23321  23599999999999999999999999999999999887 78


Q ss_pred             HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      .++++..++.++.+||+.|+.+|++|+.||++|+.+++.||||++|||+||||+|+++++..
T Consensus       108 ~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~~  169 (195)
T cd04384         108 DEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIE  169 (195)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCccc
Confidence            89999999999999999999999999999999999999999999999999999999997543

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=100.00  E-value=1.1e-36  Score=237.47  Aligned_cols=140  Identities=30%  Similarity=0.469  Sum_probs=123.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC--C
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME--C   78 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~--~   78 (183)
                      ++|+.+|||||++|+..+++.+++.++++....++..+.+ |+|++|++||+|||+||+||+|.++|+.|+++.+..  .
T Consensus        31 ~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~  110 (207)
T cd04379          31 RRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPN  110 (207)
T ss_pred             HcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccChh
Confidence            4799999999999999999999999999764445544443 899999999999999999999999999999987651  2


Q ss_pred             CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      +...+...++.++.+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||+|+++++..
T Consensus       111 ~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~  173 (207)
T cd04379         111 DVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEF  173 (207)
T ss_pred             hHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCccc
Confidence            334456778899999999999999999999999999999999999999999999999997544

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=100.00  E-value=2.5e-36  Score=234.02  Aligned_cols=138  Identities=32%  Similarity=0.540  Sum_probs=126.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCC-cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS-REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~-~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..+++++++.+++|.+..+.. .+..|+|++|++||+|||+||+||+|.+.|+.|+.+.+. .+.
T Consensus        31 ~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp~pli~~~~~~~~i~~~~~-~~~  109 (196)
T cd04395          31 ARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRI-EDP  109 (196)
T ss_pred             HcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CCH
Confidence            579999999999999999999999999997543332 234599999999999999999999999999999998877 778


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      .+++..++.++.+||+.|+.+|.+++.||++|+.|++.|+|+++|||+||||+|+|+++.
T Consensus       110 ~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~faP~l~r~~~~  169 (196)
T cd04395         110 VERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDD  169 (196)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhhccccCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999754

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=100.00  E-value=2.6e-36  Score=234.85  Aligned_cols=133  Identities=32%  Similarity=0.457  Sum_probs=122.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      .+|+.+|||||++|+..+++++++.+++|...    ...+++|++|++||.|||+||+||+|.+.|+.|.++.+. .+.+
T Consensus        32 ~~~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~----~~~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~~~-~~~~  106 (202)
T cd04394          32 LDHLSTEGLFRKSGSVVRQKELKAKLEGGEAC----LSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQEL-PTDE  106 (202)
T ss_pred             HHCCCCCCeeeCCCCHHHHHHHHHHHcCCCCC----ccccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhc-CCHH
Confidence            35789999999999999999999999998732    125689999999999999999999999999999998877 6677


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN  139 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~  139 (183)
                      ++..+++.++.+||+.|+.+|.||+.||++|++|++.||||++|||+||||+|+++++
T Consensus       107 ~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~~~~  164 (202)
T cd04394         107 ERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEE  164 (202)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeecCCC
Confidence            8888999999999999999999999999999999999999999999999999999964

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=100.00  E-value=4.2e-36  Score=232.11  Aligned_cols=138  Identities=41%  Similarity=0.587  Sum_probs=125.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccC---CcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQL---SREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMEC   78 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~---~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~   78 (183)
                      ++|+++|||||++|+..+++++++.++++....+.   .....|+|++|++||+|||+||+||+|.+.|+.|+++.+. .
T Consensus        29 ~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi~~~~~~~~~~~~~~-~  107 (192)
T cd04398          29 NFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKI-E  107 (192)
T ss_pred             HhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-C
Confidence            47999999999999999999999999998633222   1124599999999999999999999999999999999887 7


Q ss_pred             CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      +...++..++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|++++..
T Consensus       108 ~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~  169 (192)
T cd04398         108 DESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPD  169 (192)
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCcc
Confidence            88889999999999999999999999999999999999999999999999999999999753

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=4.8e-36  Score=233.60  Aligned_cols=137  Identities=34%  Similarity=0.506  Sum_probs=123.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC----
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME----   77 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~----   77 (183)
                      ++|+.+|||||++|+..+++++++.+++|....+  ...+|+|++|++||+|||+||+||+|.+.|+.|+.+.+..    
T Consensus        29 ~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~--~~~~~~h~va~~LK~fLReLpePlip~~~y~~~~~~~~~~~~~~  106 (203)
T cd04378          29 NRALGVQGIYRVSGSKARVEKLCQAFENGKDLVE--LSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDT  106 (203)
T ss_pred             hcCCCCccceeCCCcHHHHHHHHHHHhcCCCccc--cccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccc
Confidence            5799999999999999999999999999864333  3467999999999999999999999999999999887531    


Q ss_pred             ---------CCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          78 ---------CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        78 ---------~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                               .+...++..++.++.+||+.|+.+|.+|+.||++|++|++.|||+++|||+||||+|+|++..
T Consensus       107 e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P~Ll~~~~~  178 (203)
T cd04378         107 EEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPG  178 (203)
T ss_pred             cccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhccccCCCCCC
Confidence                     123567889999999999999999999999999999999999999999999999999999865

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=100.00  E-value=5e-36  Score=236.74  Aligned_cols=139  Identities=26%  Similarity=0.464  Sum_probs=124.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCc-cccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc----
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAW-QVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM----   76 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~-~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~----   76 (183)
                      ++|+++|||||++|+..+++++++.++++.. ...+.++.+|+|++|++||+|||+||+||+|.++|+.|.++...    
T Consensus        45 ~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i  124 (225)
T cd04396          45 ENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRI  124 (225)
T ss_pred             HCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchh
Confidence            5799999999999999999999999998742 23344567899999999999999999999999999999876543    


Q ss_pred             ------------CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          77 ------------ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        77 ------------~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                                  ..+..+++..++.++.+||+.||.+|.+|+.||++|++|++.||||++|||+||||+|+++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~  200 (225)
T cd04396         125 LQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDH  200 (225)
T ss_pred             hhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcc
Confidence                        1456788999999999999999999999999999999999999999999999999999988643

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=100.00  E-value=8e-36  Score=229.47  Aligned_cols=136  Identities=31%  Similarity=0.520  Sum_probs=126.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+..+++++++.++++....  ..+.+|+|++|++||+|||+||+||+|.+.|+.|..+.+. .+..
T Consensus        28 ~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~--~~~~~~~~~va~~LK~flr~LpepLi~~~~~~~~~~~~~~-~~~~  104 (186)
T cd04377          28 MHGLYTEGIYRKSGSANKIKELRQGLDTDPDSV--NLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMEL-EEKQ  104 (186)
T ss_pred             HcCCCCCceeeCCCCHHHHHHHHHHHhCCCccc--CcccCCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHhc-CCHH
Confidence            479999999999999999999999999985333  3457799999999999999999999999999999998887 7788


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      +++..++.++.+||+.|+.+|.+++.||++|+.|++.|||+++|||+||||+|+|+++.
T Consensus       105 ~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~~~~~  163 (186)
T cd04377         105 ERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDT  163 (186)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcCCCCC
Confidence            89999999999999999999999999999999999999999999999999999998754

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=6.5e-36  Score=233.99  Aligned_cols=137  Identities=33%  Similarity=0.454  Sum_probs=120.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCC--C
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMEC--A   79 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~--~   79 (183)
                      ++|+.+|||||++|+..+++++++.+++|....  ..+.+|+|++|++||.|||+||+||+|.++|+.|+.+.+...  +
T Consensus        29 ~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~--~~~~~~~h~va~~LK~fLReLPePLi~~~~~~~~~~~~~~~~~~~  106 (211)
T cd04409          29 SRALCLKGIYRVNGAKSRVEKLCQAFENGKDLV--ELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVN  106 (211)
T ss_pred             HcCCCCCCeeECCCcHHHHHHHHHHHHcCCCcc--ccccCCHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHhhcccc
Confidence            579999999999999999999999999987433  334679999999999999999999999999999998764210  0


Q ss_pred             -------------------HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          80 -------------------TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        80 -------------------~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                                         ...++..++.++.+||+.||.+|++|+.||++|++|++.||||++|||+||||+|+||+..
T Consensus       107 e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llrp~~~  186 (211)
T cd04409         107 ETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPT  186 (211)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHHhhhhccccccCCCCC
Confidence                               0134578999999999999999999999999999999999999999999999999999744

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=100.00  E-value=2.7e-35  Score=228.11  Aligned_cols=146  Identities=29%  Similarity=0.488  Sum_probs=129.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..+++++++.+++|. ..+  .+.+ |+|++|++||+|||+||+||+|.+.|+.+..+.+.  +.
T Consensus        36 ~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~-~~~--~~~~~d~~~va~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~--~~  110 (195)
T cd04404          36 AHALTTEGIFRRSANTQVVKEVQQKYNMGE-PVD--FDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNV--DK  110 (195)
T ss_pred             HcCCCCCCeeeCCCcHHHHHHHHHHHhCCC-CCC--cccccCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC--CH
Confidence            479999999999999999999999999986 223  2344 99999999999999999999999999999998775  47


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh-------------hHHHHHH
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW-------------TTVIVVT  147 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~-------------~~~~~~~  147 (183)
                      ..+...++.++.+||+.|+.+|.+|+.||++|+.|++.|+|+++|||+||||+|+|+++.             .+.++++
T Consensus       111 ~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~l~~~~~~~~~~~~LI~~  190 (195)
T cd04404         111 EERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASMSLSAINPINTFTKFLLDH  190 (195)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCcccCHHHHHHHHHHHHHHHHh
Confidence            788899999999999999999999999999999999999999999999999999999633             2345566


Q ss_pred             hhhhc
Q psy9944         148 YYQVK  152 (183)
Q Consensus       148 ~~~~f  152 (183)
                      |+++|
T Consensus       191 ~~~iF  195 (195)
T cd04404         191 QDEIF  195 (195)
T ss_pred             HHhhC
Confidence            66665

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=100.00  E-value=4.9e-35  Score=225.63  Aligned_cols=138  Identities=26%  Similarity=0.456  Sum_probs=125.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.+++|. ..++. ..+|+|++|++||+|||+||+||+|.+.|+.++.+.+...+.+
T Consensus        33 ~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~-~~~~~-~~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~  110 (189)
T cd04393          33 QHGLEQEGLFRVNGNAETVEWLRQRLDSGE-EVDLS-KEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGED  110 (189)
T ss_pred             HcCCCCCCeeeCCCCHHHHHHHHHHHcCCC-CCCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHccChH
Confidence            479999999999999999999999999986 33333 2479999999999999999999999999999999877644677


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      ++...++.++.+||+.|+.+|.+++.||++|++|++.|+||+.|||+||||+||+.+...
T Consensus       111 ~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~~  170 (189)
T cd04393         111 EFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFHVYTDV  170 (189)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeCCCCCc
Confidence            888999999999999999999999999999999999999999999999999999887543

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=100.00  E-value=2.2e-34  Score=221.46  Aligned_cols=132  Identities=24%  Similarity=0.344  Sum_probs=115.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      .+|+.+|||||++|+..+++++++.+++|...  . ....|+|++|++||+|||+||+||+|.+.|+.+++....     
T Consensus        35 ~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~--~-~~~~d~h~va~lLK~fLReLpePli~~~~~~~~i~~~~~-----  106 (187)
T cd04389          35 LGGFQTEGIFRVPGDIDEVNELKLRVDQWDYP--L-SGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASED-----  106 (187)
T ss_pred             cCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCC--c-cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcC-----
Confidence            47999999999999999999999999998732  1 234599999999999999999999999999999876542     


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhc--ccCCCCchhhhHhhccccCCCCChhHH
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK--DRNKMSVENLASIWGPTLMHVENWTTV  143 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~--~~nkM~~~nLa~~f~P~L~~~~~~~~~  143 (183)
                        ...++.++.+||+.||.+|.||+.||++|++++  +.||||++|||+||||+|++++..+..
T Consensus       107 --~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~~~~~~~  168 (187)
T cd04389         107 --PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRCTSDDPR  168 (187)
T ss_pred             --HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCCCCCCHH
Confidence              235678899999999999999999999999754  789999999999999999998755543

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=100.00  E-value=5.7e-33  Score=211.03  Aligned_cols=139  Identities=36%  Similarity=0.570  Sum_probs=128.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+..+++++++.++++... +...+.+|+|++|+++|.|||+||+||++.+.|+.+.++.+. .+..
T Consensus        16 ~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~-~~~~   93 (174)
T smart00324       16 KRGLDTEGIYRVSGSKSRVKELREAFDSGPDP-DLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYEEFIEAAKV-EDET   93 (174)
T ss_pred             HcCCCccceeecCCcHHHHHHHHHHHhCCCCC-CcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-CCHH
Confidence            47999999999999999999999999998732 223457899999999999999999999999999999998886 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT  142 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~  142 (183)
                      ++...++.++.+||+.|+.+|.+++.||++|+.+++.|+|+++|||+||||+|+++++...
T Consensus        94 ~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~  154 (174)
T smart00324       94 ERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV  154 (174)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH
Confidence            9999999999999999999999999999999999999999999999999999999986654

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=100.00  E-value=8e-33  Score=216.56  Aligned_cols=147  Identities=14%  Similarity=0.185  Sum_probs=124.5

Q ss_pred             CCccccCCCHHHHHHHHHHHhccCccccC--CcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc-----CCCH
Q psy9944           8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQL--SREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM-----ECAT   80 (183)
Q Consensus         8 eGiFR~~g~~~~v~~l~~~~~~~~~~~~~--~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~-----~~~~   80 (183)
                      +||||++|+..++++|++.+++|......  ..+.+|+|++|++||.|||+||+||+|.++|+.|.++...     ..+.
T Consensus        41 ~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~  120 (212)
T cd04399          41 RNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSD  120 (212)
T ss_pred             eeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCH
Confidence            39999999999999999999998633221  1446799999999999999999999999999999876532     1467


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccC---CCCchhhhHhhccccCCCCCh-------------hHHH
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRN---KMSVENLASIWGPTLMHVENW-------------TTVI  144 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~n---kM~~~nLa~~f~P~L~~~~~~-------------~~~~  144 (183)
                      ++++..++.++.+||+.|+.+|++|+.||.+|++++..|   ||++.|||+||||+|+||...             ...+
T Consensus       121 ~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~e~L  200 (212)
T cd04399         121 TARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFFRDL  200 (212)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHHHHH
Confidence            899999999999999999999999999999999987666   699999999999999999633             2345


Q ss_pred             HHHhhhhcCC
Q psy9944         145 VVTYYQVKGP  154 (183)
Q Consensus       145 ~~~~~~~f~~  154 (183)
                      +++|+.+|++
T Consensus       201 i~~~~~iF~~  210 (212)
T cd04399         201 LTHKDQIFSE  210 (212)
T ss_pred             HHhHHHhccc
Confidence            5666666654

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=100.00  E-value=7.5e-32  Score=203.18  Aligned_cols=137  Identities=31%  Similarity=0.503  Sum_probs=127.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.++||||++|+..+++++++.++.+....  ..+.+|+|++|+++|.|||+||+||++.+.|+.++.+.+. .+..
T Consensus        13 ~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~--~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~-~~~~   89 (169)
T cd00159          13 KNGLNTEGIFRVSGSASKIEELKKKFDRGEDID--DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKI-EDEE   89 (169)
T ss_pred             HcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc--cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHc-CCHH
Confidence            379999999999999999999999999987432  3346799999999999999999999999999999999987 6888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      .++..++.++..||+.|+.+|.+++.||++|+.+++.|+|+++|||+||||+|++++...
T Consensus        90 ~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~  149 (169)
T cd00159          90 ERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD  149 (169)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999998653

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=100.00  E-value=9.5e-33  Score=205.02  Aligned_cols=137  Identities=34%  Similarity=0.543  Sum_probs=124.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.++||||++|+..+++++++.++.+..... ..+.+|+|++|++||.||++||+||++.+.|+.+.++.+. .+..
T Consensus        13 ~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~-~~~~   90 (151)
T PF00620_consen   13 KKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNE-NLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAASKS-ADEE   90 (151)
T ss_dssp             HHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCST-TGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTS-SSHH
T ss_pred             HhCCCCCCceeccCCHHHHHHHHHHHHhhhcccc-cccccChhhccccceeeeeccccchhhhhHHHHHhhhhcc-chhh
Confidence            4789999999999999999999999999974322 5567899999999999999999999999999999987777 8899


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ++++.++.++.+||+.|+.+|.+++.||++|..+++.|+||++|||+||||+|+++++.
T Consensus        91 ~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~  149 (151)
T PF00620_consen   91 EQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS  149 (151)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred             HHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999998753

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.97  E-value=2.3e-31  Score=209.65  Aligned_cols=130  Identities=18%  Similarity=0.299  Sum_probs=116.2

Q ss_pred             CCCCCCCCccccCCCHHH----HHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC
Q psy9944           2 SEGSMSEGIYRRSGSTTN----VSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME   77 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~----v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~   77 (183)
                      ++|+.+|||||++|+...    ++++++.+|+|....    ...|+|++|++||.|||+||+||+|.++|+.+..+... 
T Consensus        63 ~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~----~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~-  137 (220)
T cd04380          63 TRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN----SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN-  137 (220)
T ss_pred             HcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-
Confidence            469999999999999999    999999999986322    35699999999999999999999999999999988632 


Q ss_pred             CCHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          78 CATEDKVHIYRSLLE-KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        78 ~~~~~~~~~l~~ll~-~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                       +    ....+.++. .||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++...
T Consensus       138 -~----~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~  197 (220)
T cd04380         138 -N----EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRA  197 (220)
T ss_pred             -c----HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCccc
Confidence             2    234677888 9999999999999999999999999999999999999999999997553

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>KOG4269|consensus

Probab=99.97  E-value=7.5e-31  Score=231.10  Aligned_cols=154  Identities=27%  Similarity=0.410  Sum_probs=142.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhcc-CccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQD-AWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~-~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|..+.|+.|++.||.+ ..+.....+..|||+|||+||+|||+||+||++.++|..|...... .++
T Consensus       933 ~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~-~np 1011 (1112)
T KOG4269|consen  933 CRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIAL-SNP 1011 (1112)
T ss_pred             ccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccC-CCH
Confidence            58999999999999999999999999998 4333333456799999999999999999999999999999999988 688


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHHHHHHhhhhcCCCC
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSS  156 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~~~  156 (183)
                      ....-.+..+|.+||++|..++.+|+.||++|++++.+|||++.||++||||+|.+|.+....++-+|+++|..-.
T Consensus      1012 va~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPTLniPse~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1012 VAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPTLNIPSEIESKLILNYDHIFTDVM 1087 (1112)
T ss_pred             HHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeecccccCcHHhhhhhccchhhhhccch
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999998754

>KOG4270|consensus

Probab=99.96  E-value=2.3e-29  Score=217.80  Aligned_cols=136  Identities=31%  Similarity=0.488  Sum_probs=126.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      +.|++.|||||+.|...+++.+|+.+|.|.....+   ..|||++|++||.|||+||+|++++++|+.|..+... .+.+
T Consensus       180 e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~---~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~-~~e~  255 (577)
T KOG4270|consen  180 EGGLKEEGLFRINGEASKVERLREALDCGVVPDQL---YIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNC-ENED  255 (577)
T ss_pred             hcCccccceeccCCCchHHHHHHHHHcCCcccccc---cCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhc-cCHH
Confidence            57999999999999999999999999998633222   4699999999999999999999999999999988888 8899


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      ++.+.++.++.+||+.|+..|.|++.||..|++++..||||+.|||+||||+++++.+..
T Consensus       256 ~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~  315 (577)
T KOG4270|consen  256 EKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPL  315 (577)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChH
Confidence            999999999999999999999999999999999999999999999999999999997543

>KOG2200|consensus

Probab=99.96  E-value=1.9e-29  Score=214.89  Aligned_cols=135  Identities=23%  Similarity=0.451  Sum_probs=128.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|++++||||++|.+.+|+.|+..++..-+...+.|+....|++|.+||+|+|+||+||+|.++.+.|..+... ....
T Consensus       329 ~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~-~pkk  407 (674)
T KOG2200|consen  329 ERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQL-VPKK  407 (674)
T ss_pred             HhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhc-CcHH
Confidence            579999999999999999999999998876555677888899999999999999999999999999999999998 7799


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHV  137 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~  137 (183)
                      .++++++.++..||.+||++|+.|+.||++|+.+++.|+||+.|||+||||+||..
T Consensus       408 qrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l  463 (674)
T KOG2200|consen  408 QRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFHL  463 (674)
T ss_pred             HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHhh
Confidence            99999999999999999999999999999999999999999999999999999976

>KOG4407|consensus

Probab=99.96  E-value=3.2e-29  Score=226.51  Aligned_cols=152  Identities=30%  Similarity=0.447  Sum_probs=136.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCC-----cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS-----REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM   76 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~-----~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~   76 (183)
                      .+||.+.||||+|||.+-|..|++.++++++..+..     |+  |+++|.++||.|||.|||||++.++|..|+++.+.
T Consensus      1187 t~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWr--DvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk 1264 (1973)
T KOG4407|consen 1187 TYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWR--DVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRK 1264 (1973)
T ss_pred             hcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchh--hhHHHHHHHHHHHHhCCcccccccchhhhhhhccc
Confidence            379999999999999999999999999997543332     33  89999999999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH--------------
Q psy9944          77 ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT--------------  142 (183)
Q Consensus        77 ~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~--------------  142 (183)
                       .+.-+|+..++.++.+||.++|+||++|+.||.+|..|+++|||-..|||++|||+|+|+++++-              
T Consensus      1265 -~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dnm~tmVthM~dQckIV 1343 (1973)
T KOG4407|consen 1265 -STHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDNMATMVTHMSDQCKIV 1343 (1973)
T ss_pred             -ccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCccHHHHhhcchhhhhHH
Confidence             78889999999999999999999999999999999999999999999999999999999987753              


Q ss_pred             HHHHHhhhhcCCCC
Q psy9944         143 VIVVTYYQVKGPSS  156 (183)
Q Consensus       143 ~~~~~~~~~f~~~~  156 (183)
                      ..+++|+++|...+
T Consensus      1344 EtLI~~~dwfF~es 1357 (1973)
T KOG4407|consen 1344 ETLIHYNDWFFDES 1357 (1973)
T ss_pred             HHHHhhhhheeccC
Confidence            23367777766543

>KOG1451|consensus

Probab=99.95  E-value=4.8e-27  Score=200.17  Aligned_cols=153  Identities=27%  Similarity=0.424  Sum_probs=136.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHHHHhccCcc--ccCC-cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944           3 EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQ--VQLS-REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA   79 (183)
Q Consensus         3 ~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~--~~~~-~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~   79 (183)
                      +|++++|+||..|...+|++|....-.-+..  .+.+ .+.||+-++.+.||.|||.||+||.+++++..|+.+++. .+
T Consensus       402 ~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKs-dn  480 (812)
T KOG1451|consen  402 SGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKS-DN  480 (812)
T ss_pred             cCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhc-cc
Confidence            6999999999999999999987776543322  2222 246789999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh--------------hHHHH
Q psy9944          80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------TTVIV  145 (183)
Q Consensus        80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------~~~~~  145 (183)
                      .+.|+.+++.++.+||..||..|..|+.||.+|+.|+..|.||+.||++||||+|+|+++.              .++++
T Consensus       481 q~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMdIKFQNIVVEILI  560 (812)
T KOG1451|consen  481 QTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMDIKFQNIVVEILI  560 (812)
T ss_pred             hhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHcchhhhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999633              46788


Q ss_pred             HHhhhhcCCCC
Q psy9944         146 VTYYQVKGPSS  156 (183)
Q Consensus       146 ~~~~~~f~~~~  156 (183)
                      +||.-+|...+
T Consensus       561 EnyeKIF~t~P  571 (812)
T KOG1451|consen  561 ENYEKIFKTKP  571 (812)
T ss_pred             hhhHHHhcCCC
Confidence            99999987654

>KOG1450|consensus

Probab=99.94  E-value=1.7e-26  Score=200.97  Aligned_cols=137  Identities=34%  Similarity=0.493  Sum_probs=123.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCc-CCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~-~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      +.|++++||||++|+...|++|+.+++... ..++.. ...|+|.|+++||.|+|+||+||++..++..|..+... .+.
T Consensus       485 ~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~-~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~-~~~  562 (650)
T KOG1450|consen  485 KFGLDSDGIYRVSGNLASVNKLREQSDQDN-SLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQG-ELS  562 (650)
T ss_pred             hhcccCCceeeecchHHHHHHHHHhcCccc-cccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcc-cch
Confidence            479999999999999999999999999543 122211 11389999999999999999999999999999999998 788


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ..+......++..||..|+.|+++|+.||++|..|+++|||+.+|||+||||+|+++...
T Consensus       563 ~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~  622 (650)
T KOG1450|consen  563 HTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQE  622 (650)
T ss_pred             hhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEecccccccccc
Confidence            899999999999999999999999999999999999999999999999999999997533

>KOG3564|consensus

Probab=99.94  E-value=5.5e-26  Score=189.93  Aligned_cols=132  Identities=30%  Similarity=0.410  Sum_probs=123.0

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.++||||++|...++++|++.+-.++...  .....|+|++|+++|.|||+|.+||||......|..++.. .|++
T Consensus       375 aRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p--~~g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~eAa~~-tD~d  451 (604)
T KOG3564|consen  375 ARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTP--HLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFMEAAEI-TDED  451 (604)
T ss_pred             HccccccceeeccccHHHHHHHHHHHhccCCCC--ccCCcchhHHHHHHHHHHHhcccccccchHHHHHHHHhcC-CCch
Confidence            589999999999999999999999999998533  3345699999999999999999999999999999999988 8999


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHV  137 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~  137 (183)
                      ....++...+..||+.||.||.|||-|+++|++ ++.+||+.+|||.+|||+++.-
T Consensus       452 n~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh  506 (604)
T KOG3564|consen  452 NSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGH  506 (604)
T ss_pred             hHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhcc
Confidence            999999999999999999999999999999888 7889999999999999999984

>KOG2710|consensus

Probab=99.93  E-value=5.9e-26  Score=189.97  Aligned_cols=135  Identities=33%  Similarity=0.502  Sum_probs=125.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCcc--ccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQ--VQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA   79 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~--~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~   79 (183)
                      ++|+++.||||+.|+..++++|++.++++.+-  ....|+++++|++|++||+|||+||+||+|.++|+.|+..++. ..
T Consensus       107 ~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl-~~  185 (412)
T KOG2710|consen  107 KNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKL-EP  185 (412)
T ss_pred             HcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcC-Cc
Confidence            58999999999999999999999999998421  3445778899999999999999999999999999999999997 55


Q ss_pred             HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccC-----------CCCchhhhHhhccccCCC
Q psy9944          80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRN-----------KMSVENLASIWGPTLMHV  137 (183)
Q Consensus        80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~n-----------kM~~~nLa~~f~P~L~~~  137 (183)
                      .++++..++.++..||+.|+++|.+++.||+.++.|+..|           +|+..|||+||+|+++..
T Consensus       186 e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k  254 (412)
T KOG2710|consen  186 ETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYK  254 (412)
T ss_pred             HHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchhhhc
Confidence            5599999999999999999999999999999999999998           999999999999999994

>KOG1117|consensus

Probab=99.91  E-value=1.3e-24  Score=191.50  Aligned_cols=154  Identities=34%  Similarity=0.553  Sum_probs=138.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|...++..|.+.+.++.-...+.....-+.+|+++||+|||+|++||+|.++|..|++++.. .+.+
T Consensus       740 qyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~-~d~~  818 (1186)
T KOG1117|consen  740 QYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAET-QDDK  818 (1186)
T ss_pred             HhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhc-cchH
Confidence            579999999999999999999999999887556666666689999999999999999999999999999999999 8899


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC-------ChhHHHHHHhhhhcCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE-------NWTTVIVVTYYQVKGP  154 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~-------~~~~~~~~~~~~~f~~  154 (183)
                      +++.....+|..||..||.||+.|+.||.+|..+++.|+|+.+|||.+|||+||-..       +...-++.+|..+|.-
T Consensus       819 Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqdehevnVledLingYvvVF~v  898 (1186)
T KOG1117|consen  819 ERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQDEHEVNVLEDLINGYVVVFEV  898 (1186)
T ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCchhhhhHHHHHhcCceEEEEe
Confidence            999999999999999999999999999999999999999999999999999999874       2234556777777776


Q ss_pred             CC
Q psy9944         155 SS  156 (183)
Q Consensus       155 ~~  156 (183)
                      +.
T Consensus       899 ~e  900 (1186)
T KOG1117|consen  899 DE  900 (1186)
T ss_pred             cH
Confidence            54

>KOG4406|consensus

Probab=99.91  E-value=2.8e-24  Score=177.60  Aligned_cols=155  Identities=26%  Similarity=0.444  Sum_probs=137.4

Q ss_pred             CC-CCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           3 EG-SMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         3 ~g-l~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      .| +++||+||.+++...+.++.+.+++|. .+++.  .+ |+|..|.++|.|+|+||+||++.++|..+.....  .+.
T Consensus       285 ~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~-pVdle--~~~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~--~~~  359 (467)
T KOG4406|consen  285 HGKLTTEGLFRRSASRSPIREVQELYNTGE-PVDLE--VYKDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSN--VDK  359 (467)
T ss_pred             cceecccceeccccCccchHHHHHHhcCCC-cccHH--HhccchhhHHHHHHHHhcCCcccchhhhhhhhhcccc--chH
Confidence            56 899999999999999999999999997 44443  55 5999999999999999999999999999887777  477


Q ss_pred             HHHHHHHHHHHHh-hChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC-------------ChhHHHHH
Q psy9944          81 EDKVHIYRSLLEK-LHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE-------------NWTTVIVV  146 (183)
Q Consensus        81 ~~~~~~l~~ll~~-Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~-------------~~~~~~~~  146 (183)
                      ..+...+++++.. ||++|+.++++++.|+.+|.+|+..|+||+.|||.||||+|+.++             .....+++
T Consensus       360 ~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~tl~q~npin~F~~~li~  439 (467)
T KOG4406|consen  360 SLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESLTLKQINPINKFTKFLIE  439 (467)
T ss_pred             HhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccccccHHHhccHHHHHHHHHH
Confidence            8899999999977 999999999999999999999999999999999999999999995             23457788


Q ss_pred             HhhhhcCCCCCCCCcc
Q psy9944         147 TYYQVKGPSSPIPAVG  162 (183)
Q Consensus       147 ~~~~~f~~~~~~~~~~  162 (183)
                      +|..+|..+.+..+.+
T Consensus       440 ~~~~~f~~~~~~~~~s  455 (467)
T KOG4406|consen  440 HYKKLFTTPENADKFS  455 (467)
T ss_pred             hhhhccCCCCCccccC
Confidence            9999998887666554

>KOG1453|consensus

Probab=99.90  E-value=9.7e-24  Score=194.07  Aligned_cols=136  Identities=33%  Similarity=0.501  Sum_probs=123.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      .+|+.+|||||++|...+++.|...++.+.....+  ...|+|++++++|+|||+||+||+++..|+.|+.+.+. ....
T Consensus       631 ~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l--~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~-~~~~  707 (918)
T KOG1453|consen  631 AHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLL--STPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKL-PEKD  707 (918)
T ss_pred             HhhhhccceeeccccHHHHHHHHHHhcCCccceec--CCCChHHHHHHHHHHHHhccccccccchHHHHHhhhcc-cccc
Confidence            47999999999999999999999999998733443  46699999999999999999999999999999999987 3333


Q ss_pred             ------HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 ------DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ------~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                            +.+..+..++..||+.|+.+|.+|+.||.+|+.++..|+|+.+|||++|||+|+|+++.
T Consensus       708 ~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~  772 (918)
T KOG1453|consen  708 EPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDG  772 (918)
T ss_pred             ccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCC
Confidence                  48899999999999999999999999999999999999999999999999999999643

>KOG1452|consensus

Probab=99.80  E-value=1.8e-19  Score=144.89  Aligned_cols=154  Identities=18%  Similarity=0.257  Sum_probs=130.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc--CC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM--EC   78 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~--~~   78 (183)
                      ++|++.-|+|+++|+.++.+-|++.|+.+.-.+.+..+.. |.+.+++++|.||||||||+++...++...+++..  +.
T Consensus       213 kRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~  292 (442)
T KOG1452|consen  213 KRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAASVALPF  292 (442)
T ss_pred             hcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecccHhHHHhCCCccccchhhhhhhhhhhhcCCC
Confidence            5899999999999999999999999998875566655555 78899999999999999999999999988887765  45


Q ss_pred             CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC---------ChhHHHHHHhh
Q psy9944          79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE---------NWTTVIVVTYY  149 (183)
Q Consensus        79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~---------~~~~~~~~~~~  149 (183)
                      |.....+.+-.++.+|+..++.+|-.++.||.-|..+++.|+||+..||.+|||.||-..         +..++..+.-+
T Consensus       293 dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~L~~~~~t~sP~t~~~~sk~~AV~~~  372 (442)
T KOG1452|consen  293 DPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCLDTFSPYTISPTSKMAAVRTL  372 (442)
T ss_pred             CccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHHHHhhhhHHHhhcccCCCccCCcchhHHHHHh
Confidence            666777888899999999999999999999999999999999999999999999997552         33344445555


Q ss_pred             hhcCCC
Q psy9944         150 QVKGPS  155 (183)
Q Consensus       150 ~~f~~~  155 (183)
                      .+-.++
T Consensus       373 ~i~~~~  378 (442)
T KOG1452|consen  373 DINQAS  378 (442)
T ss_pred             hhhccC
Confidence            554444

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.74  E-value=2.2e-17  Score=127.20  Aligned_cols=136  Identities=21%  Similarity=0.178  Sum_probs=112.6

Q ss_pred             CCCCCCCCc---cccCCCHHHHHHH-HHHHhccCccccCCc------CCcCHHHHHHHHHHHHhhCCCCCCCH-HhHHHH
Q psy9944           2 SEGSMSEGI---YRRSGSTTNVSKL-LAEFRQDAWQVQLSR------EQYTEHDVSTVLKRFFRDLPEPLLST-ELHVHL   70 (183)
Q Consensus         2 ~~gl~~eGi---FR~~g~~~~v~~l-~~~~~~~~~~~~~~~------~~~d~~~va~~lK~fLr~Lp~pLi~~-~~~~~~   70 (183)
                      ++|+.+++|   ||..++...++.+ +..++.++.......      ...|+|+++++||-++++||.++++. +.|..|
T Consensus        19 ~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~~~~~Y~~F   98 (198)
T cd04401          19 SRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVYEEF   98 (198)
T ss_pred             hcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccCCHHHHHHH
Confidence            479999999   9999999998887 666665532221111      23599999999999999999999999 999999


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          71 CNAAGMECATEDKVHIYRSLLEKL--HPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~ll~~L--p~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ...-+. .+  ....+++.++..+  |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+..
T Consensus        99 ~~~E~~-~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~  167 (198)
T cd04401          99 KARERR-SN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTG  167 (198)
T ss_pred             HHHHHh-cC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCc
Confidence            986543 11  2234888888777  7889999999999999999999999999999999999999998754

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4271|consensus

Probab=99.71  E-value=4.9e-18  Score=151.32  Aligned_cols=131  Identities=33%  Similarity=0.448  Sum_probs=121.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHH
Q psy9944           3 EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATED   82 (183)
Q Consensus         3 ~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~   82 (183)
                      .|+.+||+||++|++++...++++|.+.. ..++...+..++++|+.+|.|+..||+|++++.....+.++.+. .|...
T Consensus       946 tg~~te~lyrv~gnkT~~eelrkqf~n~~-~~dl~s~d~~v~~vagAlksffa~Lpeplipys~h~~~~e~~kI-~D~~r 1023 (1100)
T KOG4271|consen  946 TGLSTEGLYRVSGNKTDLEELRKQFLNDH-NFDLSSMDTTVNVVAGALKSFFACLPEPLIPYSYHPRLKEAMKI-SDRGR 1023 (1100)
T ss_pred             ccchhhhheecCCCCccHHHHHHHHHhhc-cccccccccccccccCcchhhhhhCCCcccCccCCcchhhhhhc-ccchh
Confidence            58899999999999999999999999854 34454445579999999999999999999999999999999998 88999


Q ss_pred             HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccC
Q psy9944          83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLM  135 (183)
Q Consensus        83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~  135 (183)
                      +...++.++..+|+.|+.+++|++.||.+|.....+|.||.+||++||+|.|.
T Consensus      1024 klhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~~~~ 1076 (1100)
T KOG4271|consen 1024 KLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPTLLM 1076 (1100)
T ss_pred             hccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccccchHH
Confidence            99999999999999999999999999999999999999999999999999887

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.69  E-value=4.5e-16  Score=121.43  Aligned_cols=147  Identities=13%  Similarity=0.172  Sum_probs=120.7

Q ss_pred             CCCccccCCCHHHHHHHHHHHhccCccc--cCCcCCcC--------HHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc
Q psy9944           7 SEGIYRRSGSTTNVSKLLAEFRQDAWQV--QLSREQYT--------EHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM   76 (183)
Q Consensus         7 ~eGiFR~~g~~~~v~~l~~~~~~~~~~~--~~~~~~~d--------~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~   76 (183)
                      +.|+||+++...-+...++.++...+..  +.+...++        -.+|+.++++|+++|||||+|..+|+.+..++.-
T Consensus        59 vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~l  138 (235)
T cd04405          59 VVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILEL  138 (235)
T ss_pred             hhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence            4799999998888999999999876442  22222232        1289999999999999999999999988888873


Q ss_pred             --CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhc-------ccCCCCchhhhHhhccccCCCCCh-------
Q psy9944          77 --ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK-------DRNKMSVENLASIWGPTLMHVENW-------  140 (183)
Q Consensus        77 --~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~-------~~nkM~~~nLa~~f~P~L~~~~~~-------  140 (183)
                        ....+.++++++.++..||++||+.|+.|+.|+.+++.+.       ..|+|   +++..|+|.++++.+.       
T Consensus       139 l~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~~~~~~~  215 (235)
T cd04405         139 LGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLDEGLADL  215 (235)
T ss_pred             hcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccccCHHHHHH
Confidence              1458899999999999999999999999999999999985       25677   8999999999999855       


Q ss_pred             -hHHHHHHhhhhcCCCC
Q psy9944         141 -TTVIVVTYYQVKGPSS  156 (183)
Q Consensus       141 -~~~~~~~~~~~f~~~~  156 (183)
                       ...++++..++|.-+.
T Consensus       216 LV~Fmmd~~~~ifkvP~  232 (235)
T cd04405         216 LVLFLMDHHQDIFKVPG  232 (235)
T ss_pred             HHHHHHHcchhhhcCCc
Confidence             3456688888887754

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4724|consensus

Probab=99.64  E-value=2.6e-16  Score=136.49  Aligned_cols=132  Identities=23%  Similarity=0.212  Sum_probs=122.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ..|-.++||||..++...++++++.++.|. .+.+.  .-.++++|.++|.|||..|.-+++.++|+.|...... .+.+
T Consensus       109 ~kgp~t~giFr~~anek~~relKe~lnsgv-~v~l~--~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~-~~~e  184 (741)
T KOG4724|consen  109 CKGPCTRGIFRTIANEKNVRELKETLNSGV-DVGLK--SGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPE-NVYE  184 (741)
T ss_pred             hcCcccHHHHHHHHHHHHHHHHHHHhcccc-ccccc--ccceEEeehhhhchhhhchhhhhccccHHHHhhcccc-ccHH
Confidence            468889999999999999999999999986 33443  4489999999999999999999999999999998888 8899


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE  138 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~  138 (183)
                      +++..++++..+||..|..+|.+|...+ .+..++..|.|+.-|||+|++|+.+...
T Consensus       185 ~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~  240 (741)
T KOG4724|consen  185 AIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVL  240 (741)
T ss_pred             HHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccc
Confidence            9999999999999999999999999999 8889999999999999999999999885

>KOG4370|consensus

Probab=99.53  E-value=2.9e-14  Score=118.54  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=129.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCc--------------------c------------------ccCCcCCcCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAW--------------------Q------------------VQLSREQYTE   43 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~--------------------~------------------~~~~~~~~d~   43 (183)
                      .+|..++|++|..+.+...+++++.-+.++.                    .                  ..-..+++.+
T Consensus        84 ~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p  163 (514)
T KOG4370|consen   84 ENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTP  163 (514)
T ss_pred             ccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhcCc
Confidence            4688999999998887555554444333210                    0                  0001235678


Q ss_pred             HHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q psy9944          44 HDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV  123 (183)
Q Consensus        44 ~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~  123 (183)
                      .+||+++|.|||+||+++++.++...|..++.. .......+.++.++..||..||.++.|+.-|+..|....--|||+.
T Consensus       164 ~tvcSllk~~lr~lpenlLT~el~~rFeev~~h-~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~  242 (514)
T KOG4370|consen  164 KTVCSLLKSRLRRLPENLLTVELKTRFEEVFLH-AQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNK  242 (514)
T ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcch
Confidence            999999999999999999999999999999999 8888999999999999999999999999999999999888999999


Q ss_pred             hhhhHhhccccCCCCChhHHHHHHhhhhcCCCC
Q psy9944         124 ENLASIWGPTLMHVENWTTVIVVTYYQVKGPSS  156 (183)
Q Consensus       124 ~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~~~  156 (183)
                      .+|+++.+|++--+.-...++..+...+|++..
T Consensus       243 q~i~i~lspt~q~s~r~l~al~~h~q~lf~~v~  275 (514)
T KOG4370|consen  243 QQIFINLSPTEQESKRGLQALGLHLQTLFEMVR  275 (514)
T ss_pred             hheeeecchHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            999999999998888788888888888888765

>KOG3565|consensus

Probab=99.12  E-value=9.7e-11  Score=104.29  Aligned_cols=135  Identities=28%  Similarity=0.330  Sum_probs=119.3

Q ss_pred             CCCCCCCccc-cCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCC-CCCHHhHHHHHHHhccCCCH
Q psy9944           3 EGSMSEGIYR-RSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP-LLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         3 ~gl~~eGiFR-~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~p-Li~~~~~~~~~~~~~~~~~~   80 (183)
                      +|+..+|||| ++|....+...+.++..| ........+.+... +.++|.|++.+.+| .++++.+..+.++... .+.
T Consensus       232 ~~l~~~~i~~k~s~~e~~v~~~~~k~~~g-~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~~~~~~~~~~~-~~~  308 (640)
T KOG3565|consen  232 RGLRLEGILRKVSGSESSVNDIISKCERG-MRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFEDFGQPHDCAAR-DNL  308 (640)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hHhhhhccCcchhH-HHHHHHHHccCCCcccCccccccchhhhhhh-cCc
Confidence            6899999999 888889999999999998 45444444445555 99999999999999 9999999999999988 777


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ..+...++.++..+|..+..++.++..|+......+..|.|+..|+|+||||.+..-++.
T Consensus       309 ~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~  368 (640)
T KOG3565|consen  309 LSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEG  368 (640)
T ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCccc
Confidence            777789999999999999999999999999999999999999999999999999776543

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=98.60  E-value=3.7e-07  Score=77.94  Aligned_cols=137  Identities=17%  Similarity=0.194  Sum_probs=104.0

Q ss_pred             CCCCCCCCcc---ccCCCHHHHHHHHHHH-hccCccccCC-------cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHH
Q psy9944           2 SEGSMSEGIY---RRSGSTTNVSKLLAEF-RQDAWQVQLS-------REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHL   70 (183)
Q Consensus         2 ~~gl~~eGiF---R~~g~~~~v~~l~~~~-~~~~~~~~~~-------~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~   70 (183)
                      ++|+++++||   |-.-+...++.+...+ ..+.......       ....++|+++++||=.+..||..+++.+.|..|
T Consensus        21 ~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~~F  100 (420)
T PF08101_consen   21 SRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLPGGVVGWDSYEEF  100 (420)
T ss_pred             hccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcCCCccccHHHHHH
Confidence            5899999998   6666667776655544 3333210000       123589999999999999999999999999999


Q ss_pred             HHHhccCCCHHHHHHHHHHHH-HhhC-hhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          71 CNAAGMECATEDKVHIYRSLL-EKLH-PIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~ll-~~Lp-~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      ...-+. .  .-...++..++ ..|| +.|..++..++.++..|+.|+..|+|+..-|+..+|+-.|......
T Consensus       101 k~~E~~-~--~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~~~~  170 (420)
T PF08101_consen  101 KRRERE-A--GYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHPDFG  170 (420)
T ss_pred             HHHHhh-c--CCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCCCcc
Confidence            776553 1  11234555555 6775 6678899999999999999999999999999999999999886444

>KOG4724|consensus

Probab=97.51  E-value=6.2e-05  Score=66.65  Aligned_cols=136  Identities=15%  Similarity=0.156  Sum_probs=103.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHH----HHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKL----LAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME   77 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l----~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~   77 (183)
                      +.|..++++||..-+.+-+.+=    .....+..  -.+..+.+.+|++++++|.|+|++|..++..+.+..+..+.-. 
T Consensus       444 kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~g--r~vdv~sspv~taasv~KdfnRKtpRgi~sr~ihke~~ea~~l-  520 (741)
T KOG4724|consen  444 KKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDG--RPVDVPSSPVHTAASVHKDFNRKTPRGIPSREIHKESMEATFL-  520 (741)
T ss_pred             hcCCCCCccCCCccchhhhhhcccccchhhhccC--CcccCCCCCchHHHHHHHHhhhhcCCCccchHHHHHhhhhhhc-
Confidence            4678899999885544443222    12222211  1233346689999999999999999999999999999888877 


Q ss_pred             CCHHHHHHHHHH--------HHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          78 CATEDKVHIYRS--------LLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        78 ~~~~~~~~~l~~--------ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ..++++.++++.        ...+.|............-...+..++..+.||..|++.|..|+...-++.
T Consensus       521 q~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~~~csrpn~~tvd~~  591 (741)
T KOG4724|consen  521 QHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSNDSSNPGFCSRPNALTVDDV  591 (741)
T ss_pred             cchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccccccccccCCCCCccccchhhc
Confidence            677778999988        788888887766666666666677889999999999999999988766544

>KOG1453|consensus

Probab=96.76  E-value=0.003  Score=59.49  Aligned_cols=142  Identities=20%  Similarity=0.295  Sum_probs=110.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccC-ccccCCcCC--c-CHHHHHHHHHHHHhhC--CCCCCCHHhHHHHHH---
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDA-WQVQLSREQ--Y-TEHDVSTVLKRFFRDL--PEPLLSTELHVHLCN---   72 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~-~~~~~~~~~--~-d~~~va~~lK~fLr~L--p~pLi~~~~~~~~~~---   72 (183)
                      ..|....|+||.+|....+...+..++..+ ...+..+..  + ++....+.++.|+|.+  |.+....+.|..+..   
T Consensus       494 ~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c  573 (918)
T KOG1453|consen  494 SPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPAPCRTCETYSWFMELEC  573 (918)
T ss_pred             CCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCcccccccccchhhhccc
Confidence            357889999999999999999999998765 333333322  2 3445566999999999  999888888888872   


Q ss_pred             -------------HhccCCCHHHHH-------HHHHHHHH----hhChhHHHHHHHHHHHHHHHHhhcccC-CCCc-hhh
Q psy9944          73 -------------AAGMECATEDKV-------HIYRSLLE----KLHPIHYVTVRKLMGHLYFIQEKKDRN-KMSV-ENL  126 (183)
Q Consensus        73 -------------~~~~~~~~~~~~-------~~l~~ll~----~Lp~~~~~~L~~L~~~l~~v~~~~~~n-kM~~-~nL  126 (183)
                                   .... ....++.       ..+..+..    .+|.....++.++..|+.++--...+| .|+. +||
T Consensus       574 ~~c~~~chkkc~~~~~~-~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l  652 (918)
T KOG1453|consen  574 ELCRLVCHKKCLEALKS-LCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENL  652 (918)
T ss_pred             ceeeeeccccchhhccc-cCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHH
Confidence                         2222 3344455       67777787    999999999999999999999888888 7887 999


Q ss_pred             hHhhcc----ccCCCCChhHHH
Q psy9944         127 ASIWGP----TLMHVENWTTVI  144 (183)
Q Consensus       127 a~~f~P----~L~~~~~~~~~~  144 (183)
                      ..+|++    +.++.++...+.
T Consensus       653 ~~~~e~~~~~v~l~~~dih~vt  674 (918)
T KOG1453|consen  653 SAVFENGDALVLLSTPDIHAVT  674 (918)
T ss_pred             HHHhcCCccceecCCCChHHHH
Confidence            999999    778887665543

>KOG4271|consensus

Probab=96.22  E-value=0.0043  Score=57.28  Aligned_cols=133  Identities=15%  Similarity=0.127  Sum_probs=94.2

Q ss_pred             CCCCCCCC---ccccCC-CHHHHHHHHHHHh-ccCccccCCcCCcCHH--HHHHHHH--HHHhhCCCCCCCHHhHHHHHH
Q psy9944           2 SEGSMSEG---IYRRSG-STTNVSKLLAEFR-QDAWQVQLSREQYTEH--DVSTVLK--RFFRDLPEPLLSTELHVHLCN   72 (183)
Q Consensus         2 ~~gl~~eG---iFR~~g-~~~~v~~l~~~~~-~~~~~~~~~~~~~d~~--~va~~lK--~fLr~Lp~pLi~~~~~~~~~~   72 (183)
                      +.|+..||   |-|.+. +...|+.-.-.++ .|.....+. +..+||  -|+..++  .-|+.++..+.+...+..+..
T Consensus       384 ~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~-~~~~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~  462 (1100)
T KOG4271|consen  384 KDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVN-SFQQPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDE  462 (1100)
T ss_pred             hcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchh-hhcCcchhHHHhhhhhhhhhhhcccccCCccccccccc
Confidence            46899999   888888 6666666555565 344222222 223788  5777887  788999999888887777766


Q ss_pred             H--hccCCCHHHHHHHHHHHH-Hh--hChhHHH----HHHHHHHHHHHHHhhcccCCCCch-hhhHhhcc-ccCC
Q psy9944          73 A--AGMECATEDKVHIYRSLL-EK--LHPIHYV----TVRKLMGHLYFIQEKKDRNKMSVE-NLASIWGP-TLMH  136 (183)
Q Consensus        73 ~--~~~~~~~~~~~~~l~~ll-~~--Lp~~~~~----~L~~L~~~l~~v~~~~~~nkM~~~-nLa~~f~P-~L~~  136 (183)
                      +  +.. .-.+.|+..++..+ ..  .|.+++.    ++.+++..+.-+..++..|.|++. .-+.|.+| .+++
T Consensus       463 a~gY~~-~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aCkS~~llL~  536 (1100)
T KOG4271|consen  463 ASGYGR-DINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAACKSPHLLLR  536 (1100)
T ss_pred             cccccc-cccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence            6  444 34455777776665 44  5777666    666666666777778899999999 99999999 5777

>KOG1449|consensus

Probab=95.12  E-value=0.0038  Score=54.92  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=32.8

Q ss_pred             HHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHH
Q psy9944         107 GHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTV  143 (183)
Q Consensus       107 ~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~  143 (183)
                      .||..|+.++..+.|.+.|||++|+|+|+|+..++.-
T Consensus         2 rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~   38 (670)
T KOG1449|consen    2 RHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESS   38 (670)
T ss_pred             cchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHh
Confidence            6899999999999999999999999999998655443

>KOG1449|consensus

Probab=85.20  E-value=0.11  Score=46.14  Aligned_cols=83  Identities=25%  Similarity=0.320  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCC
Q psy9944          42 TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM  121 (183)
Q Consensus        42 d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM  121 (183)
                      |+..+...++.|.+.+|.|+.. ..      ..+. +...+.+...+--...+++.|+.+-..|..||.+.+.-.     
T Consensus       273 di~v~S~d~dp~s~Q~~pp~~~-~~------~~k~-Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-----  339 (670)
T KOG1449|consen  273 DIVVESWDMDPYSRQLPPPYPK-EA------FEKE-DSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-----  339 (670)
T ss_pred             ceeeeccccChhhhhcCCCCcc-cc------cccc-cCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-----
Confidence            6777788999999999999555 11      1222 445566777777888899999999999999999988643     


Q ss_pred             CchhhhHhhccccCCCCC
Q psy9944         122 SVENLASIWGPTLMHVEN  139 (183)
Q Consensus       122 ~~~nLa~~f~P~L~~~~~  139 (183)
                        .+++|+|.|+++|++.
T Consensus       340 --~s~~I~~~~~~~r~pp  355 (670)
T KOG1449|consen  340 --KSLAIVWSPNLFRPPP  355 (670)
T ss_pred             --ccceeecCCCCCCCCC
Confidence              7999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		1e-17
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		1e-17
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		1e-15
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		5e-15
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		6e-15
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		5e-14
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		1e-13
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		2e-12
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-12
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		4e-12
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-12
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		2e-11
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		2e-11
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		4e-11
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		2e-09
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-08
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		3e-07
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		1e-05
1pbw_A	216	Structure Of Bcr-Homology (Bh) Domain Length = 216		4e-05

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EG+YR SG+ T+   +  +F QD   + L   + T + V+  LK FF DLP+PL+ 
Sbjct: 42  GLCTEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIP 100
Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             LH  L  AA +   TE ++H  + +++K HP++Y   R ++ HL  + ++   N M+ 
Sbjct: 101 YSLHPELLEAAKIPDKTE-RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 159
Query: 124 ENLASIWGPTLM 135
           +NL+  + PTLM
Sbjct: 160 DNLSICFWPTLM 171

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EG+YR SG+ T+   +  +F QD   + L   + T + V+  LK FF DLP+PL+ 
Sbjct: 52  GLCTEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIP 110
Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             LH  L  AA +   TE ++H  + +++K HP++Y   R ++ HL  + ++   N M+ 
Sbjct: 111 YSLHPELLEAAKIPDKTE-RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 169
Query: 124 ENLASIWGPTLM 135
           +NL+  + PTLM
Sbjct: 170 DNLSICFWPTLM 181

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEP 60
           + G  SEG+YR SG T ++  +   F +D  +  +S   Y + ++ T  LK +FRDLP P
Sbjct: 301 ARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIP 360
Query: 61  LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
           +++ + +    +AA +  A E ++     +L  L P HY T+R LM HL  +   +  N 
Sbjct: 361 VITYDTYSKFIDAAKISNADE-RLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNF 419
Query: 121 MSVENLASIWGPTLM 135
           M+ ENL  ++GPTLM
Sbjct: 420 MNAENLGIVFGPTLM 434

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTEL 66
           +GIYR SG+   + KL     Q+  ++ L   Q+ + H V+  LK FFR+LPEPL     
Sbjct: 54  DGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSF 112
Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
                 A   +     ++   +SL++KL P +  T++ L GHL  I  K  +N MS ++L
Sbjct: 113 FEQFVEAIKKQ-DNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171
Query: 127 ASIWGPTLMHVENWTTVIVV 146
             ++GPTL+  EN T  + +
Sbjct: 172 GIVFGPTLLRAENETGNMAI 191

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQV-QLSREQYTE--HDVSTVLKRFFRDLPEPLLST 64
           +GIYR SG  +N+ +L  EF  D+  V  L++E Y +  H V ++ K +FR+LP PLL+ 
Sbjct: 55  DGIYRLSGVASNIQRLRHEF--DSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTY 112
Query: 65  ELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
           +L+    +A       E  + I+  ++++L P HY T+  LM HL  + +      M  +
Sbjct: 113 QLYEKFSDAVSAATDEERLIKIH-DVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171
Query: 125 NLASIWGPTLM 135
           NLA +W P L+
Sbjct: 172 NLAIVWAPNLL 182

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEP 60
           S G  SEG+YR SG +  +  +   F +D  +  +S   Y + ++ T  LK +FRDLP P
Sbjct: 37  SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIP 96
Query: 61  LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
           L++ + +     +A +    ++++      L+ L P H  T+R LM HL  +   +  N 
Sbjct: 97  LITYDAYPKFIESAKI-MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENL 155
Query: 121 MSVENLASIWGPTLM 135
           M+ ENL  ++GPTLM
Sbjct: 156 MNAENLGIVFGPTLM 170

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEP 60
           S G  SEG+YR SG +  +  +   F +D  +  +S   Y + ++ T  LK +FRDLP P
Sbjct: 298 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIP 357
Query: 61  LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
           L++ + +     +A +    ++++      L+ L P H  T+R LM HL  +   +  N 
Sbjct: 358 LITYDAYPKFIESAKI-MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENL 416
Query: 121 MSVENLASIWGPTLM 135
           M+ ENL  ++GPTLM
Sbjct: 417 MNAENLGIVFGPTLM 431

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G  +EGIYR SG+ + +  L  +F QD   + L+ + +T + V+  +K FF +LP+PL+ 
Sbjct: 83  GLSTEGIYRVSGNKSEMESLQRQFDQDH-NLDLAEKDFTVNTVAGAMKSFFSELPDPLVP 141
Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             + + L  A  +    E K+H  + +L+K    ++   + ++ HL  +      N M+ 
Sbjct: 142 YNMQIDLVEAHKIN-DREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTS 200
Query: 124 ENLASIWGPTLM 135
           ENL+  + PTLM
Sbjct: 201 ENLSICFWPTLM 212

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
           +EGI+RRS +T  V ++  ++      + +  +QY E H  + +LK F R+LPEPLL+ +
Sbjct: 45  TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 101
Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
           L+ H+     ++ +   +V     +L+ L   +Y  +R L   L  I    D+NKM+  N
Sbjct: 102 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 159
Query: 126 LASIWGPTLM 135
           LA ++GP L+
Sbjct: 160 LAVVFGPNLL 169

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
           +EGI+RRS +T  V ++  ++      + +  +QY E H  + +LK F R+LPEPLL+ +
Sbjct: 41  TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 97
Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
           L+ H+     ++ +   +V     +L+ L   +Y  +R L   L  I    D+NKM+  N
Sbjct: 98  LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 155
Query: 126 LASIWGPTLM 135
           LA ++GP L+
Sbjct: 156 LAVVFGPNLL 165

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
           +EGI+RRS +T  V ++  ++      + +  +QY E H  + +LK F R+LPEPLL+ +
Sbjct: 80  TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 136
Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
           L+ H+     ++ +   +V     +L+ L   +Y  +R L   L  I    D+NKM+  N
Sbjct: 137 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 194
Query: 126 LASIWGPTLM 135
           LA ++GP L+
Sbjct: 195 LAVVFGPNLL 204

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
           +EGI+RRS +T  V ++  ++      + +  +QY   H  + +LK F R+LPEPLL+ +
Sbjct: 44  TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNALHLPAVILKTFLRELPEPLLTFD 100
Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
           L+ H+     ++ +   +V     +L+ L   +Y  +R L   L  I    D+NKM+  N
Sbjct: 101 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 158
Query: 126 LASIWGPTLM 135
           LA ++GP L+
Sbjct: 159 LAVVFGPNLL 168

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
           +EGI+ RS +T  V ++  ++      + +  +QY E H  + +LK F R+LPEPLL+ +
Sbjct: 72  TEGIFARSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 128
Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
           L+ H+     ++ +   +V     +L+ L   +Y  +R L   L  I    D+NKM+  N
Sbjct: 129 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 186
Query: 126 LASIWGPTLM 135
           LA ++GP L+
Sbjct: 187 LAVVFGPNLL 196

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
           +EG++R+SGS   +  L  + + D  +  LS       D++ +LK+FFR+LPEP+L  +L
Sbjct: 100 TEGLFRKSGSVIRLKAL--KNKVDHGEGCLSSAPPC--DIAGLLKQFFRELPEPILPADL 155
Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
           H  L  A  +    ++K  +  S L   H +H   +R     L  +  +   NKM   NL
Sbjct: 156 HEALLKAQQLGTEEKNKATLLLSCLLADHTVH--VLRYFFNFLRNVSLRSSENKMDSSNL 213
Query: 127 ASIWGPTLMH 136
           A I+ P L+ 
Sbjct: 214 AVIFAPNLLQ 223

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLP 58
           + G   +G+YR  G  + V KLL+         +   E   E ++ T+   LK + R LP
Sbjct: 50  TRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLP 109
Query: 59  EPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDR 118
            PL+  +       AA +E   E +V    SL+ +L   +   +  LM HL  + +   +
Sbjct: 110 GPLMMYQFQRSFIKAAKLE-NQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQ 168
Query: 119 NKMSVENLASIWGPTLMHVENWTTVIVV 146
           N M+V NL  ++GPTL+  +  T   ++
Sbjct: 169 NLMTVANLGVVFGPTLLRPQEETVAAIM 196

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 3   EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
           +G +++GI+R+S +  +  +L  E      +V L  E      +++VLK F R++P  + 
Sbjct: 40  KGPLTKGIFRQSANVKSCREL-KEKLNSGVEVHLDCESI--FVIASVLKDFLRNIPGSIF 96
Query: 63  STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
           S++L+ H  +    +   E+K++  + LL++L   + V +R L G L+ I++    N+M+
Sbjct: 97  SSDLYDHWVSVMD-QGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMT 155
Query: 123 VENLASIWGPTLM 135
             NLA    P+++
Sbjct: 156 AFNLAVCVAPSIL 168

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G    G+YR SG    V +L  +F +    V L  +    H + ++LK F R+L EPLL+
Sbjct: 32  GLTETGLYRISGCDRTVKELKEKFLR-VKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLT 90
Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
             L+     AA +         +Y+++ E L   +  T+  LM HL  + +     KM V
Sbjct: 91  FRLNRAFMEAAEITDEDNSIAAMYQAVGE-LPQANRDTLAFLMIHLQRVAQSP-HTKMDV 148
Query: 124 ENLASIWGPTLM 135
            NLA ++GPT++
Sbjct: 149 ANLAKVFGPTIV 160

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 27/141 (19%)
Query: 9   GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHV 68
           G++R+SG  + + + L +  + A    ++ E  + +DV+ +LK++FRDLPEPL++ +L  
Sbjct: 56  GLFRKSGVKSRI-QALRQMNEGAIDC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKL-- 111
Query: 69  HLCNAAGMECATEDKVHIYRSLL--EKLHPIHYVTV-------RKLMGHLYFIQE---KK 116
                      +E  + IY+ +   ++L  I    +         L   LYF+ +     
Sbjct: 112 -----------SETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAV 160
Query: 117 DRNKMSVENLASIWGPTLMHV 137
             N+M+  NLA    P+L H+
Sbjct: 161 KENQMTPTNLAVCLAPSLFHL 181

>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain Length = 216

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 13  RSGSTTNVSKLLAEFRQ--DAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHL 70
           R+ S++N    LAE RQ  D     +  E    H ++   KR+  DLP P++   ++  +
Sbjct: 48  RTQSSSN----LAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEM 103
Query: 71  CNAAGMECATEDKVHIYRSLLEKLHPIH--YVTVRKLMGHLYFIQEKKDRNKMSVENLAS 128
            + A    ++E+ + + + L+      H  ++T++ L+ H + + +   +N ++   L+ 
Sbjct: 104 ISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSE 163
Query: 129 IWGPTLMH 136
           I+ P L  
Sbjct: 164 IFSPMLFR 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	3e-40
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	5e-40
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	6e-40
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	7e-40
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	2e-39
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	4e-39
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	3e-38
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	7e-38
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	1e-37
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	2e-37
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	5e-37
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	5e-37
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	9e-37
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	1e-36
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	1e-30
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	2e-27

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  134 bits (340), Expect = 3e-40
 Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
           +EG+YR SG+ T+   +  +F QD   + L   + T + V+  LK FF DLP+PL+   L
Sbjct: 45  TEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIPYSL 103

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
           H  L  AA +   TE ++H  + +++K HP++Y   R ++ HL  + ++   N M+ +NL
Sbjct: 104 HPELLEAAKIPDKTE-RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162

Query: 127 ASIWGPTLM 135
           +  + PTLM
Sbjct: 163 SICFWPTLM 171

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  133 bits (338), Expect = 5e-40
 Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
           SEG+YR SG +  +  +   F +D  +  +S   Y + + ++  LK +FRDLP PL++ +
Sbjct: 42  SEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYD 101

Query: 66  LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
            +     +A +    E ++      L+ L P H  T+R LM HL  +   +  N M+ EN
Sbjct: 102 AYPKFIESAKIMDPDE-QLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAEN 160

Query: 126 LASIWGPTLM 135
           L  ++GPTLM
Sbjct: 161 LGIVFGPTLM 170

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  133 bits (338), Expect = 6e-40
 Identities = 26/132 (19%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
              +YR   S+ N+++L      D   V L       H ++   KR+  DLP P++   +
Sbjct: 43  CSTLYRTQSSS-NLAELRQLLDCDTPSVDLE--MIDVHVLADAFKRYLLDLPNPVIPAAV 99

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
           +  + + A    ++E+ + + + L+    +   +++T++ L+ H + + +   +N ++  
Sbjct: 100 YSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNAR 159

Query: 125 NLASIWGPTLMH 136
            L+ I+ P L  
Sbjct: 160 VLSEIFSPMLFR 171

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  134 bits (340), Expect = 7e-40
 Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
           +EGIYR SG+ + +  L  +F QD   + L+ + +T + V+  +K FF +LP+PL+   +
Sbjct: 86  TEGIYRVSGNKSEMESLQRQFDQDH-NLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNM 144

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
            + L  A  +    + K+H  + +L+K    ++   + ++ HL  +      N M+ ENL
Sbjct: 145 QIDLVEAHKINDREQ-KLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203

Query: 127 ASIWGPTLM 135
           +  + PTLM
Sbjct: 204 SICFWPTLM 212

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  133 bits (336), Expect = 2e-39
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEPLLS 63
            +G+YR  G  + V KLL+         +   E   E ++ T+   LK + R LP PL+ 
Sbjct: 55  EQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMM 114

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            +       AA +E   E +V    SL+ +L   +   +  LM HL  + +   +N M+V
Sbjct: 115 YQFQRSFIKAAKLENQ-ESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTV 173

Query: 124 ENLASIWGPTLM 135
            NL  ++GPTL+
Sbjct: 174 ANLGVVFGPTLL 185

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  132 bits (333), Expect = 4e-39
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 6   MSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE--HDVSTVLKRFFRDLPEPLLS 63
           + +GIYR SG  +N+ +L  EF  +     L++E Y +  H V ++ K +FR+LP PLL+
Sbjct: 53  IVDGIYRLSGVASNIQRLRHEFDSEH-VPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLT 111

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            +L+    +A       E ++     ++++L P HY T+  LM HL  + +      M  
Sbjct: 112 YQLYEKFSDAVSAATDEE-RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHA 170

Query: 124 ENLASIWGPTLM 135
           +NLA +W P L+
Sbjct: 171 KNLAIVWAPNLL 182

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  129 bits (326), Expect = 3e-38
 Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTEL 66
           +GIYR SG+   + KL     Q+  ++ L   Q+ + H V+  LK FFR+LPEPL     
Sbjct: 54  DGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSF 112

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
                 A   +     ++   +SL++KL P +  T++ L GHL  I  K  +N MS ++L
Sbjct: 113 FEQFVEAIKKQDN-NTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171

Query: 127 ASIWGPTLMHVEN 139
             ++GPTL+  EN
Sbjct: 172 GIVFGPTLLRAEN 184

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  128 bits (323), Expect = 7e-38
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
           EGI+RRS +T  V ++  ++      V   +     H  + +LK F R+LPEPLL+ +L+
Sbjct: 45  EGIFRRSANTQVVREVQQKYNMGL-PVDFDQYNAL-HLPAVILKTFLRELPEPLLTFDLY 102

Query: 68  VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
            H+     ++     +V     +L+ L   +Y  +R L   L  I    D+NKM+  NLA
Sbjct: 103 PHVVGFLNID--ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 160

Query: 128 SIWGPTLMHVEN 139
            ++GP L+  ++
Sbjct: 161 VVFGPNLLWAKD 172

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  127 bits (322), Expect = 1e-37
 Identities = 34/136 (25%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G +++GI+R+S +  +  +L  +      +V L  +  +   +++VLK F R++P  + S
Sbjct: 41  GPLTKGIFRQSANVKSCRELKEKLNSGV-EVHL--DCESIFVIASVLKDFLRNIPGSIFS 97

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
           ++L+ H  +        E+K++  + LL++L   + V +R L G L+ I++    N+M+ 
Sbjct: 98  SDLYDHWVSVMDQGND-EEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTA 156

Query: 124 ENLASIWGPTLMHVEN 139
            NLA    P+++    
Sbjct: 157 FNLAVCVAPSILWPPA 172

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  133 bits (336), Expect = 2e-37
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLL 62
           G  SEG+YR SG +  +  +   F +D  +  +S   Y + + ++  LK +FRDLP PL+
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359

Query: 63  STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
           + + +     +A +    E ++      L+ L P H  T+R LM HL  +   +  N M+
Sbjct: 360 TYDAYPKFIESAKIMDPDE-QLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMN 418

Query: 123 VENLASIWGPTLM 135
            ENL  ++GPTLM
Sbjct: 419 AENLGIVFGPTLM 431

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  126 bits (318), Expect = 5e-37
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
            G+YR SG    V +L  +F +      LS+     H + ++LK F R+L EPLL+  L+
Sbjct: 36  TGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDI-HAICSLLKDFLRNLKEPLLTFRLN 94

Query: 68  VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
                AA +    ++ +      + +L   +  T+  LM HL  + +     KM V NLA
Sbjct: 95  RAFMEAAEITDE-DNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQ-SPHTKMDVANLA 152

Query: 128 SIWGPTLM 135
            ++GPT++
Sbjct: 153 KVFGPTIV 160

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  126 bits (319), Expect = 5e-37
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
            G++R+SG  + +  L          V    E  + +DV+ +LK++FRDLPEPL++ +L 
Sbjct: 55  VGLFRKSGVKSRIQALRQMNEGAIDCVNY--EGQSAYDVADMLKQYFRDLPEPLMTNKLS 112

Query: 68  VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
                        + ++   ++ +  L   +   ++ L+  L  +      N+M+  NLA
Sbjct: 113 ETFLQIYQYVPKDQ-RLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLA 171

Query: 128 SIWGPTLMH 136
               P+L H
Sbjct: 172 VCLAPSLFH 180

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  126 bits (319), Expect = 9e-37
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 8   EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
           EGI+RRS +T  V ++  ++      V   +     H  + +LK F R+LPEPLL+ +L+
Sbjct: 81  EGIFRRSANTQVVREVQQKYNMGL-PVDFDQYNEL-HLPAVILKTFLRELPEPLLTFDLY 138

Query: 68  VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
            H+     ++     +V     +L+ L   +Y  +R L   L  I    D+NKM+  NLA
Sbjct: 139 PHVVGFLNID--ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 196

Query: 128 SIWGPTLMHVEN 139
            ++GP L+  ++
Sbjct: 197 VVFGPNLLWAKD 208

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  127 bits (320), Expect = 1e-36
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 1   MSEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP 60
           + +   +EG++R+SGS   +  L  +       +          D++ +LK+FFR+LPEP
Sbjct: 94  LEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCL----SSAPPCDIAGLLKQFFRELPEP 149

Query: 61  LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
           +L  +LH  L  A  +   TE+K      L   L       +R     L  +  +   NK
Sbjct: 150 ILPADLHEALLKAQQLG--TEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENK 207

Query: 121 MSVENLASIWGPTLMHV 137
           M   NLA I+ P L+  
Sbjct: 208 MDSSNLAVIFAPNLLQT 224

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score =  109 bits (275), Expect = 1e-30
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 15/168 (8%)

Query: 7   SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
           SE  YR           L++  Q  W             ++  +K F   LP PL++ E 
Sbjct: 58  SESHYRPELPAPRTDWSLSDVDQ--WDT---------AALADGIKSFLLALPAPLVTPEA 106

Query: 67  HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
                 A   E A      +       L     +T+R L+ HL  +  +      +V  L
Sbjct: 107 SAEARRAL-REAAGPVGPAL---EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRAL 162

Query: 127 ASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVLE 174
            + +GP L+      +             SP     ++  +L E + E
Sbjct: 163 GATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEHLEE 210

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  105 bits (262), Expect = 2e-27
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
               E +++  G    + +++     D    +      + H V+  L  F   LPEP++ 
Sbjct: 214 ACHQEDLFQTPGMQEELQQIIDCL--DTSIPET--IPGSNHSVAEALLIFLEALPEPVIC 269

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
            EL+    ++A           I R ++ +L   H    R LM  L  + +  + N ++ 
Sbjct: 270 YELYQRCLDSA-------YDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNA 322

Query: 124 ENLASIWGPTLMH 136
             +A+++   L+ 
Sbjct: 323 NMIATLFTSLLLR 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	100.0
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	100.0
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	100.0
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	100.0
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	100.0
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	100.0
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	100.0
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	100.0
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	100.0
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	100.0
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	100.0
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	100.0
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	100.0
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	100.0
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	99.97
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	99.97

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=246.42  Aligned_cols=151  Identities=33%  Similarity=0.523  Sum_probs=133.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..++++|++.+++|. ..++.... .|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus        48 ~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~-~~~~~~~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~-~~~  125 (214)
T 3byi_A           48 KRGLDVDGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKK-QDN  125 (214)
T ss_dssp             HHTTTSTTTTTSCCCHHHHHHHHHHHHTTC-CCCTTSGGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTS-SSH
T ss_pred             HhCCCCCCccccCCCHHHHHHHHHHHhcCC-CCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCH
Confidence            369999999999999999999999999986 33433222 399999999999999999999999999999999987 788


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh--------------HHHHH
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT--------------TVIVV  146 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~--------------~~~~~  146 (183)
                      ++++..++.++.+||+.|+.+|.+|+.||++|+.|++.||||++|||+||||+|++++...              +.+++
T Consensus       126 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLa~vf~P~Ll~~~~~~~~~~~~~~~~~~vve~LI~  205 (214)
T 3byi_A          126 NTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNMAIHMVYQNQIAELMLS  205 (214)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHCCTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHhHHHhccccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999996432              34557


Q ss_pred             HhhhhcCC
Q psy9944         147 TYYQVKGP  154 (183)
Q Consensus       147 ~~~~~f~~  154 (183)
                      +|..+|+.
T Consensus       206 ~~~~iF~~  213 (214)
T 3byi_A          206 EYSKIFGS  213 (214)
T ss_dssp             THHHHHC-
T ss_pred             HHHHhcCC
Confidence            77777764

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.5e-38  Score=244.34  Aligned_cols=139  Identities=30%  Similarity=0.474  Sum_probs=127.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..++++|++.+++++...+++... .|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus        37 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLpePLl~~~~~~~~~~~~~~-~~~  115 (202)
T 2osa_A           37 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI-MDP  115 (202)
T ss_dssp             HHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHC-CSH
T ss_pred             HhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCH
Confidence            369999999999999999999999999865444554323 499999999999999999999999999999999988 788


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      +++++.++.++.+||+.|+.+|.+|+.||++|++|++.||||+.|||+||||+|+++++..
T Consensus       116 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~vf~P~Ll~~~~~~  176 (202)
T 2osa_A          116 DEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD  176 (202)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCCC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHccccCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999997643

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=100.00  E-value=2.9e-38  Score=246.00  Aligned_cols=153  Identities=29%  Similarity=0.483  Sum_probs=137.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.+++|. ..++....+|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.+
T Consensus        40 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~-~~~~~~~~~d~~~va~lLK~flreLPePLi~~~l~~~~~~~~~~-~~~~  117 (209)
T 2ee4_A           40 DTGLCTEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKI-PDKT  117 (209)
T ss_dssp             HTCSCCTTTTTSCCCHHHHHHHHHHHHHCT-TCCHHHHTCCHHHHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSC-SSHH
T ss_pred             HhCCCCCCccccCCCHHHHHHHHHHHhcCC-CCCcccCCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-CCHH
Confidence            479999999999999999999999999986 23332224699999999999999999999999999999999988 7888


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh--------------hHHHHHH
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------TTVIVVT  147 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------~~~~~~~  147 (183)
                      +++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.|||+||||+|+|++..              .+.++++
T Consensus       118 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~~l~~~~~~~~vve~LI~~  197 (209)
T 2ee4_A          118 ERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQ  197 (209)
T ss_dssp             HHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSCCSCCCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHHHHHHhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999998522              3466788


Q ss_pred             hhhhcCCCC
Q psy9944         148 YYQVKGPSS  156 (183)
Q Consensus       148 ~~~~f~~~~  156 (183)
                      +..+|....
T Consensus       198 ~~~iF~~~~  206 (209)
T 2ee4_A          198 CQFFFYNGE  206 (209)
T ss_dssp             HHHHTTCCC
T ss_pred             hHHHcCCCC
Confidence            888887654

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.6e-38  Score=243.44  Aligned_cols=135  Identities=24%  Similarity=0.420  Sum_probs=126.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+++++++.++.|. ..  +++.+|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.+
T Consensus        39 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~-~~--~~~~~d~~~va~lLK~flreLp~pLl~~~l~~~~~~~~~~-~~~~  114 (201)
T 3msx_B           39 QKGPLTKGIFRQSANVKSCRELKEKLNSGV-EV--HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQ-GNDE  114 (201)
T ss_dssp             HHGGGSTTTTTSCCCHHHHHHHHHHHHHTC-CC--CTTSSCHHHHHHHHHHHHHTSTTTTTTGGGHHHHHHGGGS-SSHH
T ss_pred             HhCCCCCCeeeeCCCHHHHHHHHHHhccCC-CC--CCCcccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcc-ccHH
Confidence            468999999999999999999999999986 23  3446699999999999999999999999999999999987 7889


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      +++..++.++.+||+.|+.+|++|+.||++|++|++.||||++|||+||||+|+|+++.
T Consensus       115 ~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~ll~~~~~  173 (201)
T 3msx_B          115 EKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPAS  173 (201)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhhhccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999754

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=100.00  E-value=2.1e-38  Score=247.97  Aligned_cols=154  Identities=18%  Similarity=0.381  Sum_probs=131.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..+ ++|++.+++|....+  ++.+|+|++|++||.|||+||+||+|.++|+.|+++.+...+.+
T Consensus        38 ~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~--~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~  114 (216)
T 1pbw_A           38 KKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVD--LEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE  114 (216)
T ss_dssp             HHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCC--GGGBCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHH
T ss_pred             HcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCC--ccccCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence            369999999999999999 999999999863333  34679999999999999999999999999999999997437888


Q ss_pred             HHHHHHHHHHH--hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh-----------HHHHHHh
Q psy9944          82 DKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT-----------TVIVVTY  148 (183)
Q Consensus        82 ~~~~~l~~ll~--~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~-----------~~~~~~~  148 (183)
                      +++..++.++.  +||+.|+.+|++|+.||++|++|++.||||++|||+||||+|+|+++..           +.+++++
T Consensus       115 ~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~vve~LI~~~  194 (216)
T 1pbw_A          115 EYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDNTENLIKVIEILISTE  194 (216)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCchhhhHHHHHHHHHHHhhh
Confidence            99999999999  9999999999999999999999999999999999999999999997542           3567899


Q ss_pred             hhhcCCCCCC
Q psy9944         149 YQVKGPSSPI  158 (183)
Q Consensus       149 ~~~f~~~~~~  158 (183)
                      +.+|++.+.+
T Consensus       195 ~~iF~~~P~~  204 (216)
T 1pbw_A          195 WNERQPAPAL  204 (216)
T ss_dssp             C---------
T ss_pred             HHhcCCCCCC
Confidence            9999987543

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=100.00  E-value=1.8e-37  Score=244.92  Aligned_cols=155  Identities=23%  Similarity=0.405  Sum_probs=134.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHH-HHhccC-ccccCCc-CCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLA-EFRQDA-WQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMEC   78 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~-~~~~~~-~~~~~~~-~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~   78 (183)
                      ++|+.+|||||++|+..+++++++ .++.+. ...++.. ..+|+|++|++||.|||+||+||+|.++|+.|+.+.+. .
T Consensus        50 ~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~-~  128 (231)
T 1f7c_A           50 TRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKL-E  128 (231)
T ss_dssp             HHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTC-S
T ss_pred             HhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc-C
Confidence            369999999999999999999986 467764 1233331 24799999999999999999999999999999999988 7


Q ss_pred             CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC--------------hhHHH
Q psy9944          79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN--------------WTTVI  144 (183)
Q Consensus        79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~--------------~~~~~  144 (183)
                      +.++++..++.++.+||+.|+.+|.+|+.||++|++|++.||||+.|||+||||+|++++.              ..+.+
T Consensus       129 ~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vve~L  208 (231)
T 1f7c_A          129 NQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEIL  208 (231)
T ss_dssp             SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSGGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999964              23567


Q ss_pred             HHHhhhhcCCCCC
Q psy9944         145 VVTYYQVKGPSSP  157 (183)
Q Consensus       145 ~~~~~~~f~~~~~  157 (183)
                      +++|..+|+....
T Consensus       209 I~~~~~iF~~~~~  221 (231)
T 1f7c_A          209 IENHEKIFNTVPE  221 (231)
T ss_dssp             HHTHHHHHHSCCC
T ss_pred             HHHHHHhCCCCCC
Confidence            8999999987763

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=246.11  Aligned_cols=151  Identities=26%  Similarity=0.444  Sum_probs=135.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..++++|++.++.|. ..++..+.+|+|++|++||.|||+||+||+|.++|+.|+.+.+. .+.+
T Consensus        81 ~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~-~~~~~~~~~dvh~va~lLK~fLReLPePLl~~~l~~~~~~~~~~-~~~~  158 (246)
T 3fk2_A           81 ATGLSTEGIYRVSGNKSEMESLQRQFDQDH-NLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKI-NDRE  158 (246)
T ss_dssp             HHCTTSTTTTTSCCCHHHHHHHHHHHHHCT-TCCSGGGTCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHTTC-CSHH
T ss_pred             HhCCCCCCeeEeCCcHHHHHHHHHHHhcCC-CCCcccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHhcc-CCHH
Confidence            369999999999999999999999999987 34554456799999999999999999999999999999999987 8889


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh--------------hHHHHHH
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------TTVIVVT  147 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------~~~~~~~  147 (183)
                      +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||+.|||+||||+|+||+..              .+.++++
T Consensus       159 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~ive~LI~~  238 (246)
T 3fk2_A          159 QKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMDALTATRTYQTIIELFIQQ  238 (246)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHHCCCSSSSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHhcccccCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999998522              2355667


Q ss_pred             hhhhcCC
Q psy9944         148 YYQVKGP  154 (183)
Q Consensus       148 ~~~~f~~  154 (183)
                      +..+|.+
T Consensus       239 ~~~iF~n  245 (246)
T 3fk2_A          239 CPFFFYN  245 (246)
T ss_dssp             HHHHHC-
T ss_pred             HHHhcCC
Confidence            7767653

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=242.68  Aligned_cols=152  Identities=28%  Similarity=0.494  Sum_probs=132.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC--cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ--YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA   79 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~--~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~   79 (183)
                      ++|+ +|||||++|+..++++|++.++.|. ..++..+.  +|+|++|++||.|||+||+||+|.++|+.|+++.+. .+
T Consensus        50 ~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~-~~~~~~~~~~~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~-~~  126 (229)
T 3iug_A           50 RYGI-VDGIYRLSGVASNIQRLRHEFDSEH-VPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA-AT  126 (229)
T ss_dssp             HHCC-STTTTTSCCCHHHHHHHHHHHHTTC-CCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTS-SS
T ss_pred             HcCC-CCCCeecCCcHHHHHHHHHHHhcCC-CCCccccccccchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHc-CC
Confidence            4688 8999999999999999999999986 33333322  499999999999999999999999999999999998 78


Q ss_pred             HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh-------------------
Q psy9944          80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW-------------------  140 (183)
Q Consensus        80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~-------------------  140 (183)
                      .++++..++.++.+||+.|+.+|++|+.||++|++|++.||||+.|||+||||+|+|+++.                   
T Consensus       127 ~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~  206 (229)
T 3iug_A          127 DEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSV  206 (229)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCC-------------------CHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChHHHHHHHhccccCCCcccccccchHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999998632                   


Q ss_pred             -hHHHHHHhhhhcCCCC
Q psy9944         141 -TTVIVVTYYQVKGPSS  156 (183)
Q Consensus       141 -~~~~~~~~~~~f~~~~  156 (183)
                       .+.+++++..+|+.+.
T Consensus       207 vve~LI~~~~~iF~~~~  223 (229)
T 3iug_A          207 VVEFILNHVDVLFSGRI  223 (229)
T ss_dssp             HHHHHHHTHHHHTC---
T ss_pred             HHHHHHHhHHHhCCCcH
Confidence             2356688888888754

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=100.00  E-value=3.2e-37  Score=238.26  Aligned_cols=134  Identities=31%  Similarity=0.497  Sum_probs=122.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..+++++++.+++|. ..++  +. .|+|++|++||.|||+||+||+|.++|+.|+++.+.  +.
T Consensus        39 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~-~~~~--~~~~d~~~~a~lLK~flreLpePLi~~~l~~~~~~~~~~--~~  113 (198)
T 1tx4_A           39 AHALTTEGIFRRSANTQVVREVQQKYNMGL-PVDF--DQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI--DE  113 (198)
T ss_dssp             HHCTTCTTTTTSCCCHHHHHHHHHHHHTTC-CCCG--GGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS--CG
T ss_pred             HhCCCCCCeeecCCcHHHHHHHHHHHhCCC-CCCc--cccccchHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHcC--CH
Confidence            369999999999999999999999999987 2333  23 389999999999999999999999999999998764  56


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ++++..++.++.+||+.|+.+|++|+.||++|++|++.||||++|||+||||+|+++++.
T Consensus       114 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~Ll~~~~~  173 (198)
T 1tx4_A          114 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDA  173 (198)
T ss_dssp             GGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhhhcccccCCCCc
Confidence            789999999999999999999999999999999999999999999999999999999754

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=235.67  Aligned_cols=133  Identities=29%  Similarity=0.427  Sum_probs=122.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..++++|++.+++|....++  ..+ |+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus        30 ~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~--~~~~d~h~va~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~  106 (201)
T 2ovj_A           30 QRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLL--SKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEI-TDE  106 (201)
T ss_dssp             HHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCG--GGCCCHHHHHHHHHHHHHTSSSCTTCTTTHHHHHHHHHC-SSH
T ss_pred             HhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccc--cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCH
Confidence            36999999999999999999999999998633332  244 99999999999999999999999999999999988 788


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE  138 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~  138 (183)
                      ++++..++.++.+||+.|+.+|.+|+.||++|+++ +.||||++|||+||||+|++++
T Consensus       107 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~~~  163 (201)
T 2ovj_A          107 DNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHA  163 (201)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcCCC
Confidence            89999999999999999999999999999999996 6899999999999999999875

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=100.00  E-value=1.6e-36  Score=241.01  Aligned_cols=150  Identities=29%  Similarity=0.460  Sum_probs=131.7

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..+++++++.+++|. ..++  +.+ |+|++|++||.|||+||+||+|.++|+.|+++.+.  +.
T Consensus        75 ~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~-~~~~--~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~--~~  149 (242)
T 1ow3_A           75 AHALTTEGIFRRSANTQVVREVQQKYNMGL-PVDF--DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI--DE  149 (242)
T ss_dssp             HHCTTCTTTTTSCCCHHHHHHHHHHHHTTC-CCCG--GGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS--CG
T ss_pred             HcCCCCCceeeeCCcHHHHHHHHHHHhcCC-CCCc--ccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcC--CH
Confidence            369999999999999999999999999986 2333  333 89999999999999999999999999999998764  56


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh-------------hHHHHHH
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW-------------TTVIVVT  147 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~-------------~~~~~~~  147 (183)
                      ++++..++.++.+||+.|+.+|.+|+.||++|++|++.||||+.|||+||||+|+++++.             .+.++++
T Consensus       150 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~v~~LI~~  229 (242)
T 1ow3_A          150 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDH  229 (242)
T ss_dssp             GGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSHHHHHHTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999998753             2457788


Q ss_pred             hhhhcCCCC
Q psy9944         148 YYQVKGPSS  156 (183)
Q Consensus       148 ~~~~f~~~~  156 (183)
                      |..+|+...
T Consensus       230 ~~~iF~~~~  238 (242)
T 1ow3_A          230 QGELFPSPD  238 (242)
T ss_dssp             HHHHC----
T ss_pred             HHHHcCCCC
Confidence            888997653

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=236.88  Aligned_cols=137  Identities=23%  Similarity=0.346  Sum_probs=126.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..++++|++.++.++...+  ++.+|+|++|++||.|||+||+||+|.++|+.|+.+.+. .+.+
T Consensus        49 ~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~--~~~~~~~~va~lLK~fLReLPePLl~~~l~~~~~~~~~~-~~~~  125 (228)
T 3kuq_A           49 NHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVN--YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQY-VPKD  125 (228)
T ss_dssp             HHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCC--CTTCCHHHHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHH-SCGG
T ss_pred             HhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCC--cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCHH
Confidence            4699999999999999999999999987653333  456799999999999999999999999999999999887 7778


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                      +++..++.++.+||+.|+.+|++|+.||++|+.+++.||||+.|||+||||+|++++...
T Consensus       126 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~  185 (228)
T 3kuq_A          126 QRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLK  185 (228)
T ss_dssp             GHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCC-
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHHhhhhcCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999997553

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-35  Score=235.54  Aligned_cols=148  Identities=26%  Similarity=0.376  Sum_probs=122.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..++++|++.++.|...    ....|+|++|++||.|||+||+||+|.++|+.|+.+.+.  +.+
T Consensus        95 e~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~----~~~~~~~~va~lLK~fLReLPePLl~~~ly~~~~~~~~~--~~~  168 (271)
T 3eap_A           95 EDHIHTEGLFRKSGSVIRLKALKNKVDHGEGC----LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQL--GTE  168 (271)
T ss_dssp             GGGTTC--------CHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTTS--CHH
T ss_pred             HhCCCCCCeeeeCCCHHHHHHHHHHHHcCCCC----cccccHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHH--hHH
Confidence            46899999999999999999999999998732    235699999999999999999999999999999999885  556


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC------------------hhHH
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN------------------WTTV  143 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~------------------~~~~  143 (183)
                      ++...++.++..||+.|+.+|.+|+.||++|+++++.||||+.|||+||||+|+++++                  ..+.
T Consensus       169 ~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~vve~  248 (271)
T 3eap_A          169 EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQT  248 (271)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCCCCccchhhhHHHHHHHHHHHHHH
Confidence            7888889999999999999999999999999999999999999999999999999975                  2346


Q ss_pred             HHHHhhhhcCCC
Q psy9944         144 IVVTYYQVKGPS  155 (183)
Q Consensus       144 ~~~~~~~~f~~~  155 (183)
                      +++++..+|.-+
T Consensus       249 LI~~~~~IF~vp  260 (271)
T 3eap_A          249 LIDYASDIGRVP  260 (271)
T ss_dssp             HHHTGGGTTCCC
T ss_pred             HHHhHHHHhCCC
Confidence            678888888654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=100.00  E-value=2.3e-34  Score=247.50  Aligned_cols=138  Identities=30%  Similarity=0.477  Sum_probs=127.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+.+|||||++|+..++++|++.+|.+....++.... .|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus       298 ~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~~~ly~~~~~~~~~-~~~  376 (463)
T 3cxl_A          298 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI-MDP  376 (463)
T ss_dssp             HHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHC-CCH
T ss_pred             hcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhc-CCH
Confidence            369999999999999999999999999865444554322 499999999999999999999999999999999988 888


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ++++..++.++..||+.|+.+|.+|+.||++|+.+++.||||+.|||+||||+|+++++.
T Consensus       377 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~  436 (463)
T 3cxl_A          377 DEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPEL  436 (463)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCc
Confidence            999999999999999999999999999999999999999999999999999999998753

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=99.97  E-value=4.7e-32  Score=226.82  Aligned_cols=129  Identities=19%  Similarity=0.272  Sum_probs=116.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+..++++|++.++.|.. ..+   ..|+|++|++||.|||+||+||+|.++|+.|+++.+.     
T Consensus       212 ~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~---~~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~-----  282 (366)
T 3qis_A          212 KYACHQEDLFQTPGMQEELQQIIDCLDTSIP-ETI---PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYD-----  282 (366)
T ss_dssp             HHCTTCTTTTTSCCCHHHHHHHHHHHHHCCC-SSC---CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTC-----
T ss_pred             hcCCCCCCeEeCCCCHHHHHHHHHHHcCCCC-Ccc---ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhh-----
Confidence            4799999999999999999999999999863 222   2399999999999999999999999999999998875     


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT  141 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~  141 (183)
                        ...++.++.+||+.|+.+|.||+.||++|+.|++.|+||++|||+||||+|+|+++..
T Consensus       283 --~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~  340 (366)
T 3qis_A          283 --PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL  340 (366)
T ss_dssp             --HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred             --HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence              2457889999999999999999999999999999999999999999999999998543

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=99.97  E-value=4.7e-33  Score=217.16  Aligned_cols=124  Identities=22%  Similarity=0.195  Sum_probs=102.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+.     +++    +...  .+++.+|+|++|++||.|||+||+||+|.++|+.|+++.+. .+..
T Consensus        53 ~~Gl~~eGIfR~sG~~-----lr~----~~~~--~dl~~~dvh~va~lLK~flReLPePLi~~~ly~~~i~~~~~-~~~~  120 (214)
T 2xs6_A           53 RTGLDSESHYRPELPA-----PRT----DWSL--SDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGP  120 (214)
T ss_dssp             HHCTTCSGGGCCSCCC-----CCC----CCCC--TTGGGCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHC-C--C
T ss_pred             HhCCCCCCCeeeCHHH-----HHh----cccc--CCCccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCHH
Confidence            4699999999999999     333    1112  23345799999999999999999999999999999999886 3333


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      ++..   .++.+||+.|+.+|+||+.||++|+++++.||||+.|||+||||+|+|+++.
T Consensus       121 ~~~~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~  176 (214)
T 2xs6_A          121 VGPA---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPP  176 (214)
T ss_dssp             CGGG---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhhhcCCccc
Confidence            3333   6889999999999999999999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	2e-28
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	1e-26
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	7e-26
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	2e-25

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)

Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEP 60
           + G  SEG+YR SG T ++  +   F +D  +  +S   Y + + ++  LK +FRDLP P
Sbjct: 31  ARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIP 90

Query: 61  LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
           +++ + +    +AA +    ++++     +L  L P HY T+R LM HL  +   +  N 
Sbjct: 91  VITYDTYSKFIDAAKISN-ADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNF 149

Query: 121 MSVENLASIWGPTLMH 136
           M+ ENL  ++GPTLM 
Sbjct: 150 MNAENLGIVFGPTLMR 165

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.9 bits (243), Expect = 1e-26
 Identities = 28/135 (20%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
           G     +YR   S+ N+++L      D   V L  E    H ++   KR+  DLP P++ 
Sbjct: 29  GLECSTLYRTQSSS-NLAELRQLLDCDTPSVDL--EMIDVHVLADAFKRYLLDLPNPVIP 85

Query: 64  TELHVHLCNAAGMECATEDKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
             ++  + + A    ++E+ + + + L+    +   +++T++ L+ H + + +   +N +
Sbjct: 86  AAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLL 145

Query: 122 SVENLASIWGPTLMH 136
           +   L+ I+ P L  
Sbjct: 146 NARVLSEIFSPMLFR 160

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 96.0 bits (238), Expect = 7e-26
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 4   GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE---HDVSTVLKRFFRDLPEP 60
           G   +G+YR  G  + V KLL+         +   E   E     +++ LK + R LP P
Sbjct: 22  GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGP 81

Query: 61  LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
           L+  +       AA +    E +V    SL+ +L   +   +  LM HL  + +   +N 
Sbjct: 82  LMMYQFQRSFIKAAKL-ENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNL 140

Query: 121 MSVENLASIWGPTLMH 136
           M+V NL  ++GPTL+ 
Sbjct: 141 MTVANLGVVFGPTLLR 156

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 2e-25
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 2   SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPL 61
           +    +EGI+RRS +T  V ++  ++  +        +    H  + +LK F R+LPEPL
Sbjct: 37  AHALTTEGIFRRSANTQVVREVQQKY--NMGLPVDFDQYNALHLPAVILKTFLRELPEPL 94

Query: 62  LSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
           L+ +L+ H+     ++     +V     +L+ L   +Y  +R L   L  I    D+NKM
Sbjct: 95  LTFDLYPHVVGFLNIDE--SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKM 152

Query: 122 SVENLASIWGPTLMHVEN 139
           +  NLA ++GP L+  ++
Sbjct: 153 TNTNLAVVFGPNLLWAKD 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	100.0
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	100.0

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-37  Score=234.68  Aligned_cols=137  Identities=31%  Similarity=0.504  Sum_probs=126.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcC-CcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSRE-QYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT   80 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~-~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~   80 (183)
                      ++|+++|||||++|+..+++++++.++.++...++... ..|+|++|++||+|||+||+||++.+.|+.+..+.+. .+.
T Consensus        31 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pli~~~~~~~~~~~~~~-~~~  109 (196)
T d1xa6a1          31 ARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKI-SNA  109 (196)
T ss_dssp             HSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHHHHHHHHHHCSSCTTCSTTHHHHHTTTTC-CCH
T ss_pred             HhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-cch
Confidence            47999999999999999999999999987645544432 3589999999999999999999999999999999988 888


Q ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944          81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN  139 (183)
Q Consensus        81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~  139 (183)
                      +.++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+||++|||+||||+|+++++
T Consensus       110 ~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~f~P~l~~~~~  168 (196)
T d1xa6a1         110 DERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPE  168 (196)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHHHTTTSCCCCC
T ss_pred             hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHhccccccCCC
Confidence            89999999999999999999999999999999999999999999999999999999864

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-36  Score=231.70  Aligned_cols=153  Identities=24%  Similarity=0.399  Sum_probs=132.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCC---cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCC
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS---REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMEC   78 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~---~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~   78 (183)
                      ++|+.+|||||++|+..+++++++.++.+.......   ..++|+|++|++||+|||+||+||+|.+.|+.|..+.+. .
T Consensus        20 ~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~~~~~~~~~~~~~-~   98 (191)
T d1f7ca_          20 TRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKL-E   98 (191)
T ss_dssp             HHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTC-S
T ss_pred             HhCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc-c
Confidence            479999999999999999999999999986433222   236799999999999999999999999999999999988 7


Q ss_pred             CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh--------------hHHH
Q psy9944          79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------TTVI  144 (183)
Q Consensus        79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------~~~~  144 (183)
                      +.+.+.+.++.++.+||+.|+.+|.+|+.||++|+.+++.|+||+.|||+||||+|+++++.              .+.+
T Consensus        99 ~~~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~~~~~~~~~~~~iv~~L  178 (191)
T d1f7ca_          99 NQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEIL  178 (191)
T ss_dssp             SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSGGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHhhchhcCCCCcchHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999997532              2346


Q ss_pred             HHHhhhhcCCC
Q psy9944         145 VVTYYQVKGPS  155 (183)
Q Consensus       145 ~~~~~~~f~~~  155 (183)
                      +++|..+|...
T Consensus       179 I~~~~~iF~~~  189 (191)
T d1f7ca_         179 IENHEKIFNTV  189 (191)
T ss_dssp             HHTHHHHHHSC
T ss_pred             HHHHHHHCCCC
Confidence            67777777654

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=227.38  Aligned_cols=138  Identities=20%  Similarity=0.389  Sum_probs=123.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+++|||||++|+. +++++++.+++|....+  .+.+|+|++|++||+|||+||+||+|.++|+.|+.++....+.+
T Consensus        27 ~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~~~~--~~~~~~~~va~lLK~flreLp~plip~~~~~~~~~~~~~~~~~~  103 (184)
T d1pbwa_          27 KKGLECSTLYRTQSSS-NLAELRQLLDCDTPSVD--LEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE  103 (184)
T ss_dssp             HHHTTCTTTTSSCCSC-CTTHHHHHSCSSSSCCC--GGGBCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHH
T ss_pred             HhCCCCCCeeeCCchH-HHHHHHHHHhcCCCccC--cccCCHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHhccCCHH
Confidence            3689999999999985 68999999999864433  45779999999999999999999999999999998876547788


Q ss_pred             HHHHHHHHHHH--hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH
Q psy9944          82 DKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT  142 (183)
Q Consensus        82 ~~~~~l~~ll~--~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~  142 (183)
                      ++.+.++.++.  .||+.|+.+|.+|+.||++|+.|++.|+||+.|||+||||+|+|+++...
T Consensus       104 ~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~  166 (184)
T d1pbwa_         104 EYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASS  166 (184)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhhcccHhHHHHHhcchhcCCCCCCh
Confidence            89999999985  69999999999999999999999999999999999999999999876544

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=220.18  Aligned_cols=135  Identities=30%  Similarity=0.470  Sum_probs=122.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944           2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE   81 (183)
Q Consensus         2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~   81 (183)
                      ++|+.+|||||++|+.++++++++.++.|.. .++. +..|+|++|++||+|||+||+||++.+.|+.+..+.+.  ..+
T Consensus        37 ~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~-~~~~~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~--~~~  112 (196)
T d1tx4a_          37 AHALTTEGIFRRSANTQVVREVQQKYNMGLP-VDFD-QYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI--DES  112 (196)
T ss_dssp             HHCTTCTTTTTSCCCHHHHHHHHHHHHTTCC-CCGG-GSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS--CGG
T ss_pred             HcCCCCCCeeecCCcHHHHHHHHHHHhCCCC-cccc-ccccHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc--ChH
Confidence            3799999999999999999999999999873 2332 12389999999999999999999999999999988875  445


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944          82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW  140 (183)
Q Consensus        82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~  140 (183)
                      +++..++.++.+||+.|+.+|.+++.||++|+.|++.|+||+.|||+||||+|+++++.
T Consensus       113 ~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa~~f~P~l~~~~~~  171 (196)
T d1tx4a_         113 QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDA  171 (196)
T ss_dssp             GHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhhcCCCCc
Confidence            68899999999999999999999999999999999999999999999999999999754