Psyllid ID: psy9955

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MQRFVQGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK
Secondary Structure (PSIPRED)
cHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHcc
Coil and Loop (DISEMBL)
mqrfvqginpedartFEERSMLEDAKFwlssgclgdvpnpktgaSALHVAAAKGYIKVMK
Flexible Loop (DISEMBL)
mqrfvqginpedartfEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK
Low Complexity Region (SEG)
MQRFVQGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK
Disordered region (IsUnstruct)
***********************DAKFWLSSGCLGDVPN***GASALHVAAAKGYI****
Disordered Region (DISOPRED)
***FVQGINPEDARTFEERSMLEDAKFWLSSG*******PKTGASALHVAAAKGYIKVMK
Disordered Region (DISEMBL)
MQRFVQGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK
Disordered Region (DISPRO)
*QRFVQGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQRFVQGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
Q8BG95	976	Protein phosphatase 1 reg	yes	N/A	0.916	0.056	0.527	8e-11
Q9DBR7	1029	Protein phosphatase 1 reg	no	N/A	0.916	0.053	0.581	8e-11
O60237	982	Protein phosphatase 1 reg	yes	N/A	0.916	0.056	0.527	9e-11
O14974	1030	Protein phosphatase 1 reg	no	N/A	0.916	0.053	0.581	9e-11
Q10728	1032	Protein phosphatase 1 reg	no	N/A	0.916	0.053	0.581	1e-10
Q6DRG7	1049	Protein phosphatase 1 reg	yes	N/A	0.916	0.052	0.581	1e-10
Q90623	1004	Protein phosphatase 1 reg	yes	N/A	0.916	0.054	0.581	1e-10
Q3UMT1	782	Protein phosphatase 1 reg	no	N/A	0.916	0.070	0.509	6e-10
Q9BZL4	782	Protein phosphatase 1 reg	no	N/A	0.916	0.070	0.509	8e-10

>sp|Q8BG95|MYPT2_MOUSE Protein phosphatase 1 regulatory subunit 12B OS=Mus musculus GN=Ppp1r12b PE=1 SV=2

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E +R  EE+ ML+DA+ WL+SG + DV   ++GA+ALHVAAAKGY +V++
Sbjct: 180 QGVDLEQSRKEEEQQMLQDARQWLNSGRIEDVRQARSGATALHVAAAKGYSEVLR 234

Regulates myosin phosphatase activity. Augments Ca(2+) sensitivity of the contractile apparatus.
Mus musculus (taxid: 10090)

>sp|Q9DBR7|MYPT1_MOUSE Protein phosphatase 1 regulatory subunit 12A OS=Mus musculus GN=Ppp1r12a PE=1 SV=2

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERVMLRDARQWLNSGHISDVRHAKSGGTALHVAAAKGYTEVLK 216

Key regulator of protein phosphatase 1C (PPP1C). Mediates binding to myosin. As part of the PPP1C complex, involved in dephosphorylation of PLK1. Capable of inhibiting HIF1AN-dependent suppression of HIF1A activity.

Mus musculus (taxid: 10090)

>sp|O60237|MYPT2_HUMAN Protein phosphatase 1 regulatory subunit 12B OS=Homo sapiens GN=PPP1R12B PE=1 SV=2

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E +R  EE+ ML+DA+ WL+SG + DV   ++GA+ALHVAAAKGY +V++
Sbjct: 180 QGVDLEQSRKEEEQQMLQDARQWLNSGKIEDVRQARSGATALHVAAAKGYSEVLR 234

Regulates myosin phosphatase activity. Augments Ca(2+) sensitivity of the contractile apparatus.

Homo sapiens (taxid: 9606)

>sp|O14974|MYPT1_HUMAN Protein phosphatase 1 regulatory subunit 12A OS=Homo sapiens GN=PPP1R12A PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Key regulator of protein phosphatase 1C (PPP1C). Mediates binding to myosin. As part of the PPP1C complex, involved in dephosphorylation of PLK1. Capable of inhibiting HIF1AN-dependent suppression of HIF1A activity.

Homo sapiens (taxid: 9606)

>sp|Q10728|MYPT1_RAT Protein phosphatase 1 regulatory subunit 12A OS=Rattus norvegicus GN=Ppp1r12a PE=1 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHISDVRHAKSGGTALHVAAAKGYTEVLK 216

Key regulator of protein phosphatase 1C (PPP1C). Mediates binding to myosin. As part of the PPP1C complex, involved in dephosphorylation of PLK1. Capable of inhibiting HIF1AN-dependent suppression of HIF1A activity.

Rattus norvegicus (taxid: 10116)

>sp|Q6DRG7|MYPT1_DANRE Protein phosphatase 1 regulatory subunit 12A OS=Danio rerio GN=ppp1r12a PE=2 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGQINDVRHTKSGGTALHVAAAKGYAEVLK 216

Regulates myosin phosphatase activity.

Danio rerio (taxid: 7955)

>sp|Q90623|MYPT1_CHICK Protein phosphatase 1 regulatory subunit 12A OS=Gallus gallus GN=PPP1R12A PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Regulates myosin phosphatase activity.

Gallus gallus (taxid: 9031)

>sp|Q3UMT1|PP12C_MOUSE Protein phosphatase 1 regulatory subunit 12C OS=Mus musculus GN=Ppp1r12c PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           +G++ E A+  EE  +L D + WL+ G + +  +P+TGASALHVAAAKGYI+VM+
Sbjct: 194 RGVDVEAAKRAEEELLLHDTRCWLNGGAMPEARHPRTGASALHVAAAKGYIEVMR 248

Regulates myosin phosphatase activity.

Mus musculus (taxid: 10090)

>sp|Q9BZL4|PP12C_HUMAN Protein phosphatase 1 regulatory subunit 12C OS=Homo sapiens GN=PPP1R12C PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           +G++ E A+  EE  +L D + WL+ G + +  +P+TGASALHVAAAKGYI+VM+
Sbjct: 190 RGVDVEAAKRAEEELLLHDTRCWLNGGAMPEARHPRTGASALHVAAAKGYIEVMR 244

Regulates myosin phosphatase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
449490324	888	PREDICTED: protein phosphatase 1 regulat	0.916	0.061	0.563	1e-10
242023036	744	protein phosphatase 1 regulatory subunit	0.9	0.072	0.660	2e-10
449280060	862	Protein phosphatase 1 regulatory subunit	0.916	0.063	0.563	2e-10
410986252	984	PREDICTED: LOW QUALITY PROTEIN: protein	0.916	0.055	0.545	3e-10
73960245	983	PREDICTED: protein phosphatase 1 regulat	0.916	0.055	0.545	3e-10
326933549	893	PREDICTED: protein phosphatase 1 regulat	0.916	0.061	0.563	3e-10
195495382	1105	GE22289 [Drosophila yakuba] gi|194181344	0.983	0.053	0.580	3e-10
195590633	1147	GD14592 [Drosophila simulans] gi|1941970	0.983	0.051	0.580	3e-10
195327945	1147	GM25580 [Drosophila sechellia] gi|194119	0.983	0.051	0.580	3e-10
194873245	1143	GG15946 [Drosophila erecta] gi|190654951	0.983	0.051	0.580	3e-10

>gi|449490324|ref|XP_002195689.2| PREDICTED: protein phosphatase 1 regulatory subunit 12B [Taeniopygia guttata]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E +R  EE+ ML+DA+ WL+SG + D+  P+TGA+ALHVAAAKGY +VM+
Sbjct: 105 QGVDLELSRKEEEQQMLQDARQWLNSGRIEDIKQPRTGATALHVAAAKGYSEVMR 159

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242023036|ref|XP_002431942.1| protein phosphatase 1 regulatory subunit 12B, putative [Pediculus humanus corporis] gi|212517293|gb|EEB19204.1| protein phosphatase 1 regulatory subunit 12B, putative [Pediculus humanus corporis]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 2/56 (3%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGD--VPNPKTGASALHVAAAKGYIKVM 59
           QGI+ ++AR  EE  MLEDAK W + G   D  VP+PKTGA+ALHVAAAKGYIKVM
Sbjct: 166 QGIDCDEARNREEIIMLEDAKDWFNGGDNIDPLVPHPKTGATALHVAAAKGYIKVM 221

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449280060|gb|EMC87452.1| Protein phosphatase 1 regulatory subunit 12B, partial [Columba livia]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ + AR  EE+ ML+DA+ WL+SG + D+  P+TGA+ALHVAAAKGY +VM+
Sbjct: 84  QGVDLDLARKEEEQQMLQDARQWLNSGRIEDIKQPRTGATALHVAAAKGYSEVMR 138

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410986252|ref|XP_003999425.1| PREDICTED: LOW QUALITY PROTEIN: protein phosphatase 1 regulatory subunit 12B [Felis catus]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E +R  EE+ ML+DA+ WL+SG + DV  P++GA+ALHVAAAKGY +V++
Sbjct: 180 QGVDLEQSRKEEEQQMLQDARQWLNSGKIEDVRQPRSGATALHVAAAKGYSEVLR 234

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73960245|ref|XP_547351.2| PREDICTED: protein phosphatase 1 regulatory subunit 12B isoform 1 [Canis lupus familiaris]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E +R  EE+ ML+DA+ WL+SG + DV  P++GA+ALHVAAAKGY +V++
Sbjct: 180 QGVDLEQSRKEEEQQMLQDARQWLNSGKIEDVRQPRSGATALHVAAAKGYSEVLR 234

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326933549|ref|XP_003212864.1| PREDICTED: protein phosphatase 1 regulatory subunit 12B-like, partial [Meleagris gallopavo]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ + AR  EE+ ML+DA+ WL+SG + DV  P+TGA+ALHVA+AKGY +VM+
Sbjct: 87  QGVDLDLARKEEEQQMLQDARQWLNSGRIEDVKQPQTGATALHVASAKGYSEVMR 141

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195495382|ref|XP_002095243.1| GE22289 [Drosophila yakuba] gi|194181344|gb|EDW94955.1| GE22289 [Drosophila yakuba]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 3/62 (4%)

Query: 1   MQRFVQ--GINPEDARTFEERSMLEDAKFWLSSGCLG-DVPNPKTGASALHVAAAKGYIK 57
           M++ VQ   IN ++AR  EE++ML DAK WL S     D P+PKTGA+ALHVAAAKGY K
Sbjct: 164 MEKMVQELNINVDEARKAEEQAMLNDAKKWLRSDAAEVDRPHPKTGATALHVAAAKGYTK 223

Query: 58  VM 59
           V+
Sbjct: 224 VL 225

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195590633|ref|XP_002085049.1| GD14592 [Drosophila simulans] gi|194197058|gb|EDX10634.1| GD14592 [Drosophila simulans]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 3/62 (4%)

Query: 1   MQRFVQ--GINPEDARTFEERSMLEDAKFWLSSGCLG-DVPNPKTGASALHVAAAKGYIK 57
           M++ VQ   IN ++AR  EE++ML DAK WL S     D P+PKTGA+ALHVAAAKGY K
Sbjct: 164 MEKMVQELNINVDEARKAEEQAMLNDAKKWLRSDAAEVDRPHPKTGATALHVAAAKGYTK 223

Query: 58  VM 59
           V+
Sbjct: 224 VL 225

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195327945|ref|XP_002030677.1| GM25580 [Drosophila sechellia] gi|194119620|gb|EDW41663.1| GM25580 [Drosophila sechellia]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 3/62 (4%)

Query: 1   MQRFVQ--GINPEDARTFEERSMLEDAKFWLSSGCLG-DVPNPKTGASALHVAAAKGYIK 57
           M++ VQ   IN ++AR  EE++ML DAK WL S     D P+PKTGA+ALHVAAAKGY K
Sbjct: 164 MEKMVQELNINVDEARKAEEQAMLNDAKKWLRSDAAEVDRPHPKTGATALHVAAAKGYTK 223

Query: 58  VM 59
           V+
Sbjct: 224 VL 225

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194873245|ref|XP_001973168.1| GG15946 [Drosophila erecta] gi|190654951|gb|EDV52194.1| GG15946 [Drosophila erecta]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 3/62 (4%)

Query: 1   MQRFVQ--GINPEDARTFEERSMLEDAKFWLSSGCLG-DVPNPKTGASALHVAAAKGYIK 57
           M++ VQ   IN ++AR  EE++ML DAK WL S     D P+PKTGA+ALHVAAAKGY K
Sbjct: 164 MEKMVQELNINVDEARKAEEQAMLNDAKKWLRSDAAEVDRPHPKTGATALHVAAAKGYTK 223

Query: 58  VM 59
           V+
Sbjct: 224 VL 225

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
UNIPROTKB|F8VW28	97	PPP1R12A "Protein phosphatase	0.916	0.567	0.581	1.3e-11
UNIPROTKB|F1NU91	878	PPP1R12B "Uncharacterized prot	0.916	0.062	0.563	2.1e-10
UNIPROTKB|E2RHS3	983	PPP1R12B "Uncharacterized prot	0.916	0.055	0.545	2.4e-10
FB|FBgn0005536	1144	Mbs "Myosin binding subunit" [	0.983	0.051	0.580	2.9e-10
UNIPROTKB|Q90623	1004	PPP1R12A "Protein phosphatase	0.916	0.054	0.581	3.2e-10
UNIPROTKB|E1BC59	1028	PPP1R12A "Uncharacterized prot	0.916	0.053	0.581	3.3e-10
UNIPROTKB|F1NA71	1029	PPP1R12A "Protein phosphatase	0.916	0.053	0.581	3.3e-10
MGI|MGI:1309528	1029	Ppp1r12a "protein phosphatase	0.916	0.053	0.581	3.3e-10
UNIPROTKB|O14974	1030	PPP1R12A "Protein phosphatase	0.916	0.053	0.581	3.3e-10
RGD|620013	1032	Ppp1r12a "protein phosphatase	0.916	0.053	0.581	3.3e-10

UNIPROTKB|F8VW28 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct:    12 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 66

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

UNIPROTKB|F1NU91 PPP1R12B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ + AR  EE+ ML+DA+ WL+SG + DV  P+TGA+ALHVA+AKGY +VM+
Sbjct:    84 QGVDLDLARKEEEQQMLQDARQWLNSGRIEDVKQPQTGATALHVASAKGYSEVMR 138

GO:0005886 "plasma membrane" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

UNIPROTKB|E2RHS3 PPP1R12B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E +R  EE+ ML+DA+ WL+SG + DV  P++GA+ALHVAAAKGY +V++
Sbjct:   180 QGVDLEQSRKEEEQQMLQDARQWLNSGKIEDVRQPRSGATALHVAAAKGYSEVLR 234

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

FB|FBgn0005536 Mbs "Myosin binding subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 36/62 (58%), Positives = 44/62 (70%)

Query:     1 MQRFVQ--GINPEDARTFEERSMLEDAKFWLSSGCLG-DVPNPKTGASALHVAAAKGYIK 57
             M++ VQ   IN ++AR  EE +ML DAK WL S     D P+PKTGA+ALHVAAAKGY K
Sbjct:   164 MEKMVQELNINVDEARKAEELAMLNDAKKWLRSDAAEVDRPHPKTGATALHVAAAKGYTK 223

Query:    58 VM 59
             V+
Sbjct:   224 VL 225

GO:0048477 "oogenesis" evidence=IMP

GO:0017022 "myosin binding" evidence=ISS;NAS

GO:0017023 "myosin phosphatase complex" evidence=ISS;NAS

GO:0017018 "myosin phosphatase activity" evidence=ISS;IMP;NAS

GO:0007391 "dorsal closure" evidence=NAS;IMP

GO:0035317 "imaginal disc-derived wing hair organization" evidence=IMP

GO:0045314 "regulation of compound eye photoreceptor development" evidence=IMP

GO:0008544 "epidermis development" evidence=IMP

GO:0007560 "imaginal disc morphogenesis" evidence=IMP

GO:0043296 "apical junction complex" evidence=IDA

GO:0048675 "axon extension" evidence=IMP

GO:0030725 "germline ring canal formation" evidence=IMP

GO:0045179 "apical cortex" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

UNIPROTKB|Q90623 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct:   162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

GO:0005737 "cytoplasm" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISS

GO:0071889 "14-3-3 protein binding" evidence=ISS

GO:0019208 "phosphatase regulator activity" evidence=ISS

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=ISS

GO:0030155 "regulation of cell adhesion" evidence=ISS

UNIPROTKB|E1BC59 PPP1R12A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct:   162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|F1NA71 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct:   162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

GO:0000776 "kinetochore" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

MGI|MGI:1309528 Ppp1r12a "protein phosphatase 1, regulatory (inhibitor) subunit 12A" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct:   162 QGVDIEAARKEEERVMLRDARQWLNSGHISDVRHAKSGGTALHVAAAKGYTEVLK 216

GO:0000776 "kinetochore" evidence=ISO

GO:0004721 "phosphoprotein phosphatase activity" evidence=ISO

GO:0004857 "enzyme inhibitor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0006470 "protein dephosphorylation" evidence=ISO;IMP

GO:0007067 "mitosis" evidence=ISO

GO:0019208 "phosphatase regulator activity" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030155 "regulation of cell adhesion" evidence=ISO

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043292 "contractile fiber" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IMP

GO:0051297 "centrosome organization" evidence=ISO

GO:0071889 "14-3-3 protein binding" evidence=ISO

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO

UNIPROTKB|O14974 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct:   162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0019208 "phosphatase regulator activity" evidence=IMP;IDA

GO:0071889 "14-3-3 protein binding" evidence=IDA

GO:0030155 "regulation of cell adhesion" evidence=IDA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0007067 "mitosis" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0043292 "contractile fiber" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0004871 "signal transducer activity" evidence=NAS

GO:0007165 "signal transduction" evidence=NAS

RGD|620013 Ppp1r12a "protein phosphatase 1, regulatory subunit 12A" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:     6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct:   162 QGVDIEAARKEEERIMLRDARQWLNSGHISDVRHAKSGGTALHVAAAKGYTEVLK 216

GO:0000776 "kinetochore" evidence=ISO;ISS

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA

GO:0004857 "enzyme inhibitor activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0006470 "protein dephosphorylation" evidence=ISO;ISS

GO:0007067 "mitosis" evidence=ISO;ISS

GO:0019208 "phosphatase regulator activity" evidence=ISO;ISS

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030155 "regulation of cell adhesion" evidence=ISO;ISS

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=ISO;ISS

GO:0043086 "negative regulation of catalytic activity" evidence=ISO;ISS

GO:0043292 "contractile fiber" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=ISO

GO:0051297 "centrosome organization" evidence=ISO;ISS

GO:0071889 "14-3-3 protein binding" evidence=ISO;ISS

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q90623	MYPT1_CHICK	No assigned EC number	0.5818	0.9166	0.0547	yes	N/A
Q8BG95	MYPT2_MOUSE	No assigned EC number	0.5272	0.9166	0.0563	yes	N/A
Q6DRG7	MYPT1_DANRE	No assigned EC number	0.5818	0.9166	0.0524	yes	N/A
O60237	MYPT2_HUMAN	No assigned EC number	0.5272	0.9166	0.0560	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	60
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
          LE  K  L  G   +  + K G + LH+AA  G + V+K
Sbjct: 53 LEIVKLLLEKGADVNARD-KDGNTPLHLAARNGNLDVVK 90

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
KOG0505|consensus	527		99.36
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.23
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.08
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.04
KOG4412|consensus	226		99.02
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.0
PHA02798	489	ankyrin-like protein; Provisional	98.93
PHA02795	437	ankyrin-like protein; Provisional	98.89
PHA02989	494	ankyrin repeat protein; Provisional	98.89
PHA03095	471	ankyrin-like protein; Provisional	98.88
PHA02875	413	ankyrin repeat protein; Provisional	98.85
PHA02946	446	ankyin-like protein; Provisional	98.84
PHA02874	434	ankyrin repeat protein; Provisional	98.84
PHA02878	477	ankyrin repeat protein; Provisional	98.84
PHA02736	154	Viral ankyrin protein; Provisional	98.83
PHA02884	300	ankyrin repeat protein; Provisional	98.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.82
PHA02798	489	ankyrin-like protein; Provisional	98.81
KOG4412|consensus	226		98.8
PHA03100	480	ankyrin repeat protein; Provisional	98.79
PHA02859	209	ankyrin repeat protein; Provisional	98.79
PHA02791	284	ankyrin-like protein; Provisional	98.78
PHA03095	471	ankyrin-like protein; Provisional	98.77
PHA02743	166	Viral ankyrin protein; Provisional	98.76
KOG0515|consensus	752		98.76
KOG0509|consensus	600		98.75
PHA03100	480	ankyrin repeat protein; Provisional	98.75
PHA02989	494	ankyrin repeat protein; Provisional	98.75
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.74
KOG4177|consensus	1143		98.73
PHA02743	166	Viral ankyrin protein; Provisional	98.73
PHA02741	169	hypothetical protein; Provisional	98.73
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.73
PHA02874	434	ankyrin repeat protein; Provisional	98.73
PHA02946	446	ankyin-like protein; Provisional	98.73
KOG0508|consensus	615		98.73
PHA02791	284	ankyrin-like protein; Provisional	98.72
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.7
PHA02878	477	ankyrin repeat protein; Provisional	98.68
PHA02736	154	Viral ankyrin protein; Provisional	98.67
PHA02859	209	ankyrin repeat protein; Provisional	98.67
KOG0505|consensus	527		98.67
PHA02741	169	hypothetical protein; Provisional	98.64
PHA02876	682	ankyrin repeat protein; Provisional	98.63
PHA02730	672	ankyrin-like protein; Provisional	98.62
KOG0514|consensus	452		98.61
PHA02917	661	ankyrin-like protein; Provisional	98.61
KOG0508|consensus	615		98.61
KOG4177|consensus	1143		98.58
PHA02795	437	ankyrin-like protein; Provisional	98.57
PHA02884	300	ankyrin repeat protein; Provisional	98.56
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.56
PHA02917	661	ankyrin-like protein; Provisional	98.55
PHA02876	682	ankyrin repeat protein; Provisional	98.54
PHA02875	413	ankyrin repeat protein; Provisional	98.54
KOG0512|consensus	228		98.52
PF13606	30	Ank_3: Ankyrin repeat	98.51
KOG0509|consensus	600		98.46
KOG0195|consensus	448		98.45
PHA02730	672	ankyrin-like protein; Provisional	98.43
PHA02792	631	ankyrin-like protein; Provisional	98.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.37
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.35
KOG1710|consensus	396		98.34
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.29
KOG0502|consensus	296		98.29
KOG0512|consensus	228		98.26
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.25
KOG4214|consensus	117		98.04
PHA02792	631	ankyrin-like protein; Provisional	98.0
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	97.95
KOG0818|consensus	669		97.89
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	97.88
KOG0502|consensus	296		97.87
KOG0510|consensus	929		97.83
KOG0510|consensus	929		97.82
KOG0195|consensus	448		97.72
TIGR00870	743	trp transient-receptor-potential calcium channel p	97.71
KOG0511|consensus	516		97.63
TIGR00870	743	trp transient-receptor-potential calcium channel p	97.56
KOG0506|consensus	622		97.51
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	97.49
KOG0783|consensus	1267		97.43
KOG4214|consensus	117		97.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	97.19
KOG3676|consensus	782		97.06
KOG0522|consensus	560		96.91
KOG0507|consensus	854		96.86
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.85
KOG0818|consensus	669		96.81
KOG0514|consensus	452		96.75
KOG0507|consensus	854		96.68
KOG3676|consensus	782		96.61
KOG0520|consensus	975		96.59
KOG2384|consensus	223		96.58
KOG2384|consensus	223		96.39
KOG0506|consensus	622		96.37
KOG0521|consensus	785		96.36
KOG0515|consensus	752		96.2
KOG1710|consensus	396		96.02
KOG0705|consensus	749		95.91
PF13606	30	Ank_3: Ankyrin repeat	95.64
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	95.36
KOG4369|consensus	2131		94.76
KOG4369|consensus	2131		94.51
KOG0522|consensus	560		93.55
KOG0521|consensus	785		89.41
KOG2505|consensus	591		89.29
KOG0782|consensus	1004		89.29
KOG0783|consensus	1267		86.74
KOG0705|consensus	749		86.12

>KOG0505|consensus

Probab=99.36  E-value=3.9e-13  Score=98.31  Aligned_cols=57  Identities=49%  Similarity=0.733  Sum_probs=53.7

Q ss_pred             hhhhcCCChhhccchHHHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           2 QRFVQGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         2 ~~~~qGi~iea~r~~~~~~ml~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+.+|||+||++|..+++.|++|+++|+..|.+.+++|.+ |.|.||+||++||+++.
T Consensus       158 ~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r-G~T~lHvAaa~Gy~e~~  214 (527)
T KOG0505|consen  158 EMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR-GATALHVAAANGYTEVA  214 (527)
T ss_pred             HHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc-cchHHHHHHhhhHHHHH
Confidence            4678999999999999999999999999999999999777 99999999999999875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.23  E-value=6.1e-12  Score=66.20  Aligned_cols=38  Identities=34%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.++.|++.|.|+|.+ |..|.||||+|+.+|+.+++|
T Consensus        14 ~~~~~~Ll~~~~din~~-d~~g~t~lh~A~~~g~~~~~~   51 (54)
T PF13637_consen   14 LEIVKLLLEHGADINAQ-DEDGRTPLHYAAKNGNIDIVK   51 (54)
T ss_dssp             HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHccCHHHHH
Confidence            66799999999999999 999999999999999999874

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.08  E-value=2.5e-11  Score=64.81  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=17.4

Q ss_pred             HHHcC-CCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          28 WLSSG-CLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        28 Ll~~G-advn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ||+.| +++|.. |..|.||||+||.+|+.++|+
T Consensus         1 LL~~~~~~~n~~-d~~G~T~LH~A~~~g~~~~v~   33 (56)
T PF13857_consen    1 LLEHGPADVNAQ-DKYGNTPLHWAARYGHSEVVR   33 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT-HHHHH
T ss_pred             CCccCcCCCcCc-CCCCCcHHHHHHHcCcHHHHH
Confidence            67888 899999 999999999999999999874

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.04  E-value=2.3e-10  Score=61.09  Aligned_cols=47  Identities=19%  Similarity=0.333  Sum_probs=25.1

Q ss_pred             hhhcC-CChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Q psy9955           3 RFVQG-INPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVA   50 (60)
Q Consensus         3 ~~~qG-i~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~A   50 (60)
                      +++.| ++++.....+.++|        .+.+++|++.|+|++.+ |..|.||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~-d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAK-DKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCC-cCCCCCHHHhC
Confidence            35667 88999999888888        57999999999999999 99999999998

>KOG4412|consensus

Probab=99.02  E-value=1.3e-10  Score=77.37  Aligned_cols=53  Identities=32%  Similarity=0.441  Sum_probs=42.0

Q ss_pred             CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           7 GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         7 Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      |.|+++....+.+.+        ++.+++|++.||.++.. |..|.||||.||+.|.+++++
T Consensus        96 ~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~k-D~~~qtplHRAAavGklkvie  156 (226)
T KOG4412|consen   96 GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIK-DKQGQTPLHRAAAVGKLKVIE  156 (226)
T ss_pred             CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCccc-ccccCchhHHHHhccchhhHH
Confidence            777777777776666        67888888888888888 888888888888888887764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.00  E-value=2.4e-10  Score=64.00  Aligned_cols=38  Identities=37%  Similarity=0.509  Sum_probs=34.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++|+++|+++|.. |..|.||||+|+.+|+.+++|
T Consensus        39 ~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen   39 LEIVKLLLENGADINSQ-DKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHHHHTTTCTT-B-STTSSBHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHhccccccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            67999999999999999 999999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02798 ankyrin-like protein; Provisional

Probab=98.93  E-value=6.7e-10  Score=78.73  Aligned_cols=52  Identities=17%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             hhhcCCChhhccchHHHHH-------------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           3 RFVQGINPEDARTFEERSM-------------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m-------------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      ++++|.++++.+..+.+++             .+.+++|+++|+|+|.. |..|.||||+|+.+|+
T Consensus        57 Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~-d~~G~TpLh~a~~~~~  121 (489)
T PHA02798         57 FINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK-NSDGETPLYCLLSNGY  121 (489)
T ss_pred             HHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC-CCCcCcHHHHHHHcCC
Confidence            4577888877666655554             46778888888888888 8888888888887763

>PHA02795 ankyrin-like protein; Provisional

Probab=98.89  E-value=1.1e-09  Score=79.11  Aligned_cols=52  Identities=13%  Similarity=0.108  Sum_probs=38.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      +++.|++++.....+.+++        .+.+++|++.||++|.. +..|.||||+|+.+|+
T Consensus       207 LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~-d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        207 CIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAV-MSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCC
Confidence            3567777777777776666        35777888888888887 7788888888887774

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.89  E-value=1.2e-09  Score=77.60  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=45.9

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +..|++++.....+.+++        .+.+++|++.|+|+|.+ |..|.||||+|+.+|+.++|+
T Consensus       243 l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~-d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        243 ILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNV-SKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             HHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            344667777777677776        35789999999999999 999999999999999988763

>PHA03095 ankyrin-like protein; Provisional

Probab=98.88  E-value=1.4e-09  Score=75.36  Aligned_cols=56  Identities=9%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++..|++++.....+.+++        .+.++.|++.|||+|.. +..|.||||+|+.+|+.+++
T Consensus       243 ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~-~~~g~tpl~~A~~~~~~~~v  306 (471)
T PHA03095        243 LLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAV-SSDGNTPLSLMVRNNNGRAV  306 (471)
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHhCCHHHH
Confidence            4567788888777777776        35778888888888888 88888888888888888775

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.85  E-value=2.2e-09  Score=73.92  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=39.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++.....+.+++        .+.++.|++.|+++|.+ |..|.||||+|+..|+.++++
T Consensus       121 Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~TpL~~A~~~g~~eiv~  185 (413)
T PHA02875        121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICK  185 (413)
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            3456777666655555555        45677777777777777 777778888887777777653

>PHA02946 ankyin-like protein; Provisional

Probab=98.84  E-value=2.4e-09  Score=76.21  Aligned_cols=52  Identities=12%  Similarity=0.103  Sum_probs=41.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      ++++|.++++....+.+++        .+.+++|+++||++|.+ |..|.||||+|+.+++
T Consensus        58 Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~-d~~g~TpLh~A~~~~~  117 (446)
T PHA02946         58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNAC-DKQHKTPLYYLSGTDD  117 (446)
T ss_pred             HHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCC
Confidence            4567888888887777776        46788888888888888 8888888888887664

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.84  E-value=2.7e-09  Score=74.34  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.|++++.....+.+++        .+.++.|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~-d~~g~tpLh~A~~~~~~~iv~  174 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIK  174 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHCCcHHHHH
Confidence            455666666555555554        45677777777777777 777777777777777776653

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.84  E-value=2.3e-09  Score=75.56  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=32.7

Q ss_pred             hhcCCChhhccch-HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTF-EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~-~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.|++++..... +.+++        ++.+++|++.|+++|.+ +..|.||||.|+.+|+.+++
T Consensus       154 l~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~-d~~g~tpLh~A~~~~~~~iv  217 (477)
T PHA02878        154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP-DKTNNSPLHHAVKHYNKPIV  217 (477)
T ss_pred             HHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCCHHHH
Confidence            4456666555544 44444        34566666666666666 66666666666666666554

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.83  E-value=3.5e-09  Score=64.71  Aligned_cols=56  Identities=16%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             hhhcCCChhhccc-hHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDART-FEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~-~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++..|.+++.... .+.+++        .+.+++|++ .|+++|.. +..|.||||+|+..|+.+++
T Consensus        77 Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~-~~~g~tpL~~A~~~~~~~i~  142 (154)
T PHA02736         77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEIL-NYAFKTPYYVACERHDAKMM  142 (154)
T ss_pred             HHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCCCCHHHHHHHcCCHHHH
Confidence            3566777777653 455555        346777776 48888887 88888888888888877765

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.82  E-value=3.3e-09  Score=73.28  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=40.2

Q ss_pred             hhhcCCChhhcc----chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDAR----TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r----~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|+|++...    ..+.+++        .+.+++|+++|||+|...+..|.||||+|+.+|+.++++
T Consensus        52 LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivk  121 (300)
T PHA02884         52 ILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLE  121 (300)
T ss_pred             HHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            456787777642    2344444        457788888888888753457888888888888887763

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.82  E-value=2.8e-09  Score=80.18  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=49.6

Q ss_pred             hhhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           2 QRFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         2 ~~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+++.|.|++.....+.+++        .+.++.|+++|+|+|.+ |..|.||||.|+.+||.++++
T Consensus       543 ~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~-d~~G~TpL~~A~~~g~~~iv~  608 (823)
T PLN03192        543 ELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIR-DANGNTALWNAISAKHHKIFR  608 (823)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCc-CCCCCCHHHHHHHhCCHHHHH
Confidence            35678999998888888877        56889999999999999 999999999999999988763

>PHA02798 ankyrin-like protein; Provisional

Probab=98.81  E-value=3.4e-09  Score=75.15  Aligned_cols=54  Identities=11%  Similarity=0.072  Sum_probs=46.2

Q ss_pred             hcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           5 VQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         5 ~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ..|+|++.....+.+++        .+.+++|++.|||+|.. +..|.||||+|+.+|+.+++
T Consensus       246 ~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~-d~~G~TpL~~A~~~~~~~iv  307 (489)
T PHA02798        246 FSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII-TELGNTCLFTAFENESKFIF  307 (489)
T ss_pred             HhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc-CCCCCcHHHHHHHcCcHHHH
Confidence            34678888888788887        35889999999999999 99999999999999988775

>KOG4412|consensus

Probab=98.80  E-value=2e-09  Score=71.81  Aligned_cols=54  Identities=24%  Similarity=0.320  Sum_probs=48.5

Q ss_pred             hcCCChhhccchHHHHH--------HHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           5 VQGINPEDARTFEERSM--------LEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         5 ~qGi~iea~r~~~~~~m--------l~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .-+|.+|+-+.++|+++        .+.|+.|+.+ |+|+|.. ++.|.||||+||.+|..||+
T Consensus        60 q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~-tn~G~T~LHyAagK~r~eIa  122 (226)
T KOG4412|consen   60 QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNAT-TNGGQTCLHYAAGKGRLEIA  122 (226)
T ss_pred             cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCccee-cCCCcceehhhhcCChhhHH
Confidence            45788899999999998        4689999988 9999999 99999999999999999986

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.79  E-value=4.1e-09  Score=73.34  Aligned_cols=57  Identities=19%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.++.|++.|+|+|.+ +..|.||||+|+.+|+.++++
T Consensus       236 Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~-d~~g~tpl~~A~~~~~~~iv~  300 (480)
T PHA03100        236 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV-NKYGDTPLHIAILNNNKEIFK  300 (480)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHhCCHHHHH
Confidence            4677888888887777777        46888999999999999 999999999999999888764

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.79  E-value=5e-09  Score=67.79  Aligned_cols=56  Identities=11%  Similarity=-0.021  Sum_probs=33.3

Q ss_pred             hhhcCCChhhccchHHHHH----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHH-HhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM----------LEDAKFWLSSGCLGDVPNPKTGASALHVA-AAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~A-A~~G~~evv   59 (60)
                      ++++|++++.....+.+++          ++.+++|++.|+++|.+ |..|.||||.+ +.+|+.+++
T Consensus       109 Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~-d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859        109 LIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK-DFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-cCCCCcHHHHHHHhcCCHHHH
Confidence            3456666666555444433          34666667777777766 66777777743 445565554

>PHA02791 ankyrin-like protein; Provisional

Probab=98.78  E-value=5e-09  Score=71.48  Aligned_cols=36  Identities=25%  Similarity=0.236  Sum_probs=17.3

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +.+++|++.|+++|.+ |..|.||||+|+.+|+.++|
T Consensus        75 eiV~lLL~~Gadvn~~-d~~G~TpLh~Aa~~g~~eiv  110 (284)
T PHA02791         75 KIVKILLFSGMDDSQF-DDKGNTALYYAVDSGNMQTV  110 (284)
T ss_pred             HHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence            3444444444444444 44444444444444444443

>PHA03095 ankyrin-like protein; Provisional

Probab=98.77  E-value=6.2e-09  Score=72.17  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             hhhcCCChhhccchHHHHHH----------HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSML----------EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~ml----------~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++.          ..++.|++.|+++|.+ |..|.||||+|+..|+.++|+
T Consensus       208 Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~-d~~g~TpLh~A~~~~~~~~v~  274 (471)
T PHA03095        208 LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINAR-NRYGQTPLHYAAVFNNPRACR  274 (471)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            45677777777777666652          3567889999999999 899999999999999988764

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.76  E-value=6.8e-09  Score=65.03  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=21.4

Q ss_pred             HHHHHHcCCCCCCCCC-CCCCcHHHHHHhcCCcccc
Q psy9955          25 AKFWLSSGCLGDVPNP-KTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        25 ~~~Ll~~Gadvn~~~d-~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|++.|+++|.+ + ..|.||||+|+.+|+.+++
T Consensus        76 i~~Ll~~Gadin~~-d~~~g~TpLh~A~~~g~~~iv  110 (166)
T PHA02743         76 IELLVNMGADINAR-ELGTGNTLLHIAASTKNYELA  110 (166)
T ss_pred             HHHHHHcCCCCCCC-CCCCCCcHHHHHHHhCCHHHH
Confidence            45666666666666 4 4666666666666666554

>KOG0515|consensus

Probab=98.76  E-value=4e-09  Score=78.70  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.|++|++.|++||+. |.+||||||+||..+++-++|
T Consensus       596 yeIVkFLi~~ganVNa~-DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  596 YEIVKFLIEFGANVNAA-DSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hHHHHHHHhcCCcccCc-cCCCCchhhhhhhcCchHHHH
Confidence            56899999999999999 999999999999888776653

>KOG0509|consensus

Probab=98.75  E-value=3.9e-09  Score=78.57  Aligned_cols=53  Identities=25%  Similarity=0.307  Sum_probs=38.7

Q ss_pred             CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           7 GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         7 Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      |.++.+.++.+-+.+        ++.+|+|+++|||||...-..|.||||+||.+||..+|
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv  128 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVV  128 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHH
Confidence            566666655443333        67888888888888888337788888888888888776

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.75  E-value=1.1e-08  Score=71.18  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=45.8

Q ss_pred             hhhcCCChhhccchH------HHHH----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFE------ERSM----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~------~~~m----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+      .+++          .+.++.|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus       195 Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~-d~~g~TpL~~A~~~~~~~iv~  267 (480)
T PHA03100        195 LLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIK-DVYGFTPLHYAVYNNNPEFVK  267 (480)
T ss_pred             HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            456677777655444      3333          66899999999999999 999999999999999998874

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.75  E-value=6.5e-09  Score=73.80  Aligned_cols=56  Identities=20%  Similarity=0.128  Sum_probs=40.5

Q ss_pred             hhhcCCChhhccchHHHHH-----------HHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHhc--CCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM-----------LEDAKFWLSSGCLG-DVPNPKTGASALHVAAAK--GYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m-----------l~~~~~Ll~~Gadv-n~~~d~~G~TpLH~AA~~--G~~evv   59 (60)
                      ++++|+|++.....+.+++           .+.+++|+++|||+ +.. +..|.||||+|+..  ++.++|
T Consensus        94 Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~-d~~g~tpLh~a~~~~~~~~~iv  163 (494)
T PHA02989         94 LLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVK-NSRGYNLLHMYLESFSVKKDVI  163 (494)
T ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccccc-CCCCCCHHHHHHHhccCCHHHH
Confidence            4577888877777666655           25778888888888 677 88888888887654  466655

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.74  E-value=8e-09  Score=76.73  Aligned_cols=57  Identities=18%  Similarity=0.291  Sum_probs=47.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus       101 LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~-d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322        101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             HHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCcHHHHH
Confidence            4667888888877777766        46889999999999998 999999999999999988764

>KOG4177|consensus

Probab=98.73  E-value=5.4e-09  Score=82.09  Aligned_cols=55  Identities=24%  Similarity=0.270  Sum_probs=33.3

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +.+|++++.....+-+++        +..|++||++|||++.+ ++.|+||||.||..|+.+|+
T Consensus       527 ~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak-~~~G~TPLH~Aa~~G~~~i~  589 (1143)
T KOG4177|consen  527 LEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAK-DKLGYTPLHQAAQQGHNDIA  589 (1143)
T ss_pred             hhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccccc-CCCCCChhhHHHHcChHHHH
Confidence            345555555555555554        34666666666666666 56666666666666666654

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.73  E-value=1.1e-08  Score=64.13  Aligned_cols=57  Identities=14%  Similarity=0.046  Sum_probs=47.1

Q ss_pred             hhhcCCChhhcc-chHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++... ..+.+++        .+.+++|++ .|++++.. +..|.||||+|+.+|+.++++
T Consensus        79 Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~-d~~g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743         79 LVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAI-NYQHETAYHIAYKMRDRRMME  145 (166)
T ss_pred             HHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            467889998876 3565665        468889995 89999999 999999999999999988763

>PHA02741 hypothetical protein; Provisional

Probab=98.73  E-value=8.5e-09  Score=64.42  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=26.2

Q ss_pred             HHHHHHHHcCCCCCCCCC-CCCCcHHHHHHhcCCccccC
Q psy9955          23 EDAKFWLSSGCLGDVPNP-KTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d-~~G~TpLH~AA~~G~~evvk   60 (60)
                      +.++.|++.|+++|.+ + ..|.||||+|+.+|+.++++
T Consensus        78 ~ii~~Ll~~gadin~~-~~~~g~TpLh~A~~~~~~~iv~  115 (169)
T PHA02741         78 EIIDHLIELGADINAQ-EMLEGDTALHLAAHRRDHDLAE  115 (169)
T ss_pred             HHHHHHHHcCCCCCCC-CcCCCCCHHHHHHHcCCHHHHH
Confidence            4566777777777777 5 37777777777777777653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.73  E-value=8.6e-09  Score=77.60  Aligned_cols=37  Identities=30%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +.++.|+++|+|+|.+ |..|.||||+|+.+|+.++|+
T Consensus       636 ~~v~~Ll~~Gadin~~-d~~G~TpLh~A~~~g~~~iv~  672 (823)
T PLN03192        636 TAMKELLKQGLNVDSE-DHQGATALQVAMAEDHVDMVR  672 (823)
T ss_pred             HHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCcHHHHH
Confidence            5688999999999999 999999999999999999874

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.73  E-value=1e-08  Score=71.50  Aligned_cols=57  Identities=25%  Similarity=0.285  Sum_probs=48.5

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.++.|++.|+++|.. +..|.||||+|+..|+.++++
T Consensus       143 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~~g~~~iv~  207 (434)
T PHA02874        143 LFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIK  207 (434)
T ss_pred             HHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678888887777666666        56899999999999999 999999999999999998874

>PHA02946 ankyin-like protein; Provisional

Probab=98.73  E-value=8.5e-09  Score=73.41  Aligned_cols=55  Identities=15%  Similarity=0.344  Sum_probs=38.3

Q ss_pred             hhcCCChhhccchHHHHH----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcC--Ccccc
Q psy9955           4 FVQGINPEDARTFEERSM----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKG--YIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G--~~evv   59 (60)
                      ++.|.+++.....+.+++          .+.++.|++.|+++|.+ |..|.||||+||.+|  +.+++
T Consensus       160 l~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~-d~~G~TpLH~Aa~~~~~~~~iv  226 (446)
T PHA02946        160 MSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKP-DHDGNTPLHIVCSKTVKNVDII  226 (446)
T ss_pred             HhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCCcHHHH
Confidence            455666666666555554          24677888888888888 888888888888776  44443

>KOG0508|consensus

Probab=98.73  E-value=1.9e-09  Score=79.46  Aligned_cols=55  Identities=20%  Similarity=0.392  Sum_probs=31.2

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|++++.+.....+++        ++.+|+|+++|||+++. |+.|.|-||+||++||.+|+
T Consensus       104 ~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ia-nrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen  104 LRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIA-NRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             HHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccc-ccCCCeeEEeeeccCchHHH
Confidence            455555555555444444        45566666666666665 66666666666666665554

>PHA02791 ankyrin-like protein; Provisional

Probab=98.72  E-value=1.7e-08  Score=68.85  Aligned_cols=57  Identities=11%  Similarity=0.146  Sum_probs=48.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCC-cHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGA-SALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~-TpLH~AA~~G~~evvk   60 (60)
                      ++..|.+++.....+.+++        .+.+++|++.|+++|.. +..|+ ||||+|+.+|+.++|+
T Consensus        80 LL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk  145 (284)
T PHA02791         80 LLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVS  145 (284)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHH
Confidence            4567888888888777777        56999999999999998 88885 8999999999999874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.70  E-value=1.4e-08  Score=77.26  Aligned_cols=56  Identities=13%  Similarity=0.156  Sum_probs=41.1

Q ss_pred             hhhcC-CChhhc-cchHHHHH----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCc--ccc
Q psy9955           3 RFVQG-INPEDA-RTFEERSM----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYI--KVM   59 (60)
Q Consensus         3 ~~~qG-i~iea~-r~~~~~~m----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~--evv   59 (60)
                      ++++| +|++.. ...+.+++          .+.+++|+++|+++|.+ |..|.||||+|+.+|+.  ++|
T Consensus       161 LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k-D~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        161 MVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ-NNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             HHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCCCHHHH
Confidence            46677 788776 44444444          25788888888888888 88888888888888864  555

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.68  E-value=1.6e-08  Score=71.31  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=45.5

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhc-CCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAK-GYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~-G~~evvk   60 (60)
                      +++.|.+++.....+.+++        .+.++.|++.|+++|.+ |..|.||||+|+.. ++.++++
T Consensus       187 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~-d~~g~TpLh~A~~~~~~~~iv~  252 (477)
T PHA02878        187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILK  252 (477)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhcCCHHHHH
Confidence            4567888887777776666        45889999999999998 89999999999975 6777653

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.67  E-value=2.1e-08  Score=61.26  Aligned_cols=38  Identities=18%  Similarity=0.168  Sum_probs=33.5

Q ss_pred             HHHHHHHHHcCCCCCCCCC-CCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNP-KTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d-~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.+++|++.|+++|.+ + ..|.||||+|+.+|+.++++
T Consensus        71 ~e~v~~Ll~~gadin~~-~~~~g~T~Lh~A~~~~~~~i~~  109 (154)
T PHA02736         71 QEKLKLLMEWGADINGK-ERVFGNTPLHIAVYTQNYELAT  109 (154)
T ss_pred             HHHHHHHHHcCCCcccc-CCCCCCcHHHHHHHhCCHHHHH
Confidence            35688999999999999 6 69999999999999988763

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.67  E-value=2.2e-08  Score=64.81  Aligned_cols=57  Identities=19%  Similarity=0.157  Sum_probs=42.6

Q ss_pred             hhhcCCChhhcc-chHHHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHh--cCCccccC
Q psy9955           3 RFVQGINPEDAR-TFEERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAA--KGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r-~~~~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~--~G~~evvk   60 (60)
                      ++++|.+++... ..+.+++           .+.+++|+++|+++|.. |..|.||||+|+.  +|+.++++
T Consensus        72 Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~-d~~G~TpLh~a~~~~~~~~~iv~  142 (209)
T PHA02859         72 LIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE-DEDGKNLLHMYMCNFNVRINVIK  142 (209)
T ss_pred             HHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhccCCHHHHH
Confidence            457788887764 2333332           45788899999999999 9999999999876  46777763

>KOG0505|consensus

Probab=98.67  E-value=9e-09  Score=75.73  Aligned_cols=57  Identities=25%  Similarity=0.402  Sum_probs=48.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++..|++++.+..-+.+.+        .++|++|+++|++||.. |..|+||||.||..||..+++
T Consensus        59 ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~-d~e~wtPlhaaascg~~~i~~  123 (527)
T KOG0505|consen   59 LLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQ-DNEGWTPLHAAASCGYLNIVE  123 (527)
T ss_pred             HhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccc-ccccCCcchhhcccccHHHHH
Confidence            5667777777776666666        56999999999999999 999999999999999998864

>PHA02741 hypothetical protein; Provisional

Probab=98.64  E-value=2.9e-08  Score=62.02  Aligned_cols=57  Identities=11%  Similarity=0.081  Sum_probs=46.7

Q ss_pred             hhhcCCChhhccc-hHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDART-FEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~-~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++..|.+++.... .+.+++        .+.+++|++ .|++++.. |..|.||||+|+.+|+.++++
T Consensus        83 Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~-n~~g~tpL~~A~~~~~~~iv~  149 (169)
T PHA02741         83 LIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFC-NADNKSPFELAIDNEDVAMMQ  149 (169)
T ss_pred             HHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcC-CCCCCCHHHHHHHCCCHHHHH
Confidence            3457888887764 566666        468899997 59999999 999999999999999988764

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.63  E-value=2.6e-08  Score=72.97  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus       158 ~~i~k~Ll~~Gadvn~~-d~~G~TpLh~Aa~~G~~~iv~  195 (682)
T PHA02876        158 LLIAEMLLEGGADVNAK-DIYCITPIHYAAERGNAKMVN  195 (682)
T ss_pred             HHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHH
Confidence            45788889999999988 888999999999999888774

>PHA02730 ankyrin-like protein; Provisional

Probab=98.62  E-value=2.6e-08  Score=75.10  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcC--CccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKG--YIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G--~~evvk   60 (60)
                      .+.+++||++|||+|+. |..|.||||+||..|  +.|+|+
T Consensus        57 ~eivklLLs~GAdin~k-D~~G~TPLh~Aa~~~~~~~eIv~   96 (672)
T PHA02730         57 IKIVRLLLSRGVERLCR-NNEGLTPLGVYSKRKYVKSQIVH   96 (672)
T ss_pred             HHHHHHHHhCCCCCccc-CCCCCChHHHHHHcCCCcHHHHH
Confidence            36899999999999999 999999999999977  687764

>KOG0514|consensus

Probab=98.61  E-value=2e-08  Score=72.25  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=35.5

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +.++.||..|||||++ |.+|.|+|+.||..||.||||
T Consensus       354 d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivk  390 (452)
T KOG0514|consen  354 DMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVK  390 (452)
T ss_pred             HHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHH
Confidence            5899999999999999 999999999999999999985

>PHA02917 ankyrin-like protein; Provisional

Probab=98.61  E-value=3.9e-08  Score=73.43  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=34.3

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCc--cccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYI--KVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~--evvk   60 (60)
                      .+.+++|++.|||+|.. |..|.||||+|+.+|+.  |+||
T Consensus       209 ~eiv~~Li~~Gadvn~~-d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        209 PEVVKCLINHGIKPSSI-DKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             HHHHHHHHHCCCCcccC-CCCCCcHHHHHHHcCCCcHHHHH
Confidence            36899999999999999 99999999999999996  4654

>KOG0508|consensus

Probab=98.61  E-value=1.2e-08  Score=75.25  Aligned_cols=57  Identities=23%  Similarity=0.384  Sum_probs=44.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.|++-+.+-+-+-+        .+.+++|++.|||+|.+ +..|+|+||.+|..|++|++|
T Consensus       136 LvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~k-s~kGNTALH~caEsG~vdivq  200 (615)
T KOG0508|consen  136 LVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAK-SYKGNTALHDCAESGSVDIVQ  200 (615)
T ss_pred             HHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchh-cccCchHHHhhhhcccHHHHH
Confidence            4567777777777655544        46888888888888888 888888888888888888874

>KOG4177|consensus

Probab=98.58  E-value=4.4e-08  Score=77.06  Aligned_cols=57  Identities=21%  Similarity=0.338  Sum_probs=52.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.|+.+.+..+.+++        -+++.+|+++||++|+. |..|.||||+|++.||++++|
T Consensus       559 LLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~-d~~g~TpL~iA~~lg~~~~~k  623 (1143)
T KOG4177|consen  559 LLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAA-DLDGFTPLHIAVRLGYLSVVK  623 (1143)
T ss_pred             hhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcc-cccCcchhHHHHHhcccchhh
Confidence            5789999999999888887        45899999999999999 999999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=98.57  E-value=5.1e-08  Score=70.52  Aligned_cols=38  Identities=24%  Similarity=0.132  Sum_probs=35.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++|+++|||+|.+ |..|.||||+|+.+|+.++|+
T Consensus       201 ~eIve~LIs~GADIN~k-D~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        201 LEIYKLCIPYIEDINQL-DAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             HHHHHHHHhCcCCcCcC-CCCCCCHHHHHHHcCCHHHHH
Confidence            58999999999999999 999999999999999999874

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.56  E-value=7e-08  Score=66.70  Aligned_cols=55  Identities=11%  Similarity=0.024  Sum_probs=45.0

Q ss_pred             hhhcCCChhhcc-chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955           3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus         3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      ++++|.|++.-. ..+.+++        .+.+++|++.|+++|.. |..|.||||.|+.+++.++
T Consensus        89 LL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~k-d~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884         89 LIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQ-TNDMVTPIELALMICNNFL  152 (300)
T ss_pred             HHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHhCChhH
Confidence            568899999743 3455555        46899999999999999 9999999999998876654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.56  E-value=4.5e-08  Score=74.59  Aligned_cols=49  Identities=16%  Similarity=0.188  Sum_probs=40.3

Q ss_pred             CCChhhccchHHHHHH-------------HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCc
Q psy9955           7 GINPEDARTFEERSML-------------EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYI   56 (60)
Q Consensus         7 Gi~iea~r~~~~~~ml-------------~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~   56 (60)
                      ++++++....+.+++.             +.+++|++.|+|+|.+ |..|.||||+|+.+|+.
T Consensus       487 ~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~-d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        487 RYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIP-TKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             hccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCccc-CCCCCCHHHHHHHcCCc
Confidence            4455666666666663             3459999999999999 99999999999999987

>PHA02917 ankyrin-like protein; Provisional

Probab=98.55  E-value=5.9e-08  Score=72.46  Aligned_cols=57  Identities=18%  Similarity=0.117  Sum_probs=45.8

Q ss_pred             hhhhcCCChhhccchHHHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           2 QRFVQGINPEDARTFEERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         2 ~~~~qGi~iea~r~~~~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      |++.+|.++++....+.+++           .+.+++||+.|+++|.. +..|.||||.|+.+|+.+++
T Consensus        17 ~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~-~~~g~TpL~~Aa~~g~~~v~   84 (661)
T PHA02917         17 QMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK-NWRQLTPLEEYTNSRHVKVN   84 (661)
T ss_pred             HHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc-CCCCCCHHHHHHHcCChhHH
Confidence            45667777766565555554           36899999999999999 99999999999999997764

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.54  E-value=6.8e-08  Score=70.82  Aligned_cols=57  Identities=16%  Similarity=0.144  Sum_probs=51.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|+++++....+.+++        .+.+++|++.|+++|.. +..|.||||.|+..|+.+++|
T Consensus       164 Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~-~~~g~t~L~~A~~~~~~~ivk  228 (682)
T PHA02876        164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNII-ALDDLSVLECAVDSKNIDTIK  228 (682)
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678999999888888887        46899999999999999 999999999999999988764

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.54  E-value=4.8e-08  Score=67.29  Aligned_cols=36  Identities=31%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +.+++|++.|++++.. +..|.||||.|+.+|+.++|
T Consensus        49 ~~v~~Ll~~ga~~~~~-~~~~~t~L~~A~~~g~~~~v   84 (413)
T PHA02875         49 EAIKLLMKHGAIPDVK-YPDIESELHDAVEEGDVKAV   84 (413)
T ss_pred             HHHHHHHhCCCCcccc-CCCcccHHHHHHHCCCHHHH
Confidence            3555555555555555 55555555555555555544

>KOG0512|consensus

Probab=98.52  E-value=6.9e-08  Score=64.34  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCL-GDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gad-vn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +..|+.||+..++ ||.+ |.+|.||||.||++||++||+
T Consensus        76 l~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~div~  114 (228)
T KOG0512|consen   76 LTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHLDIVH  114 (228)
T ss_pred             HHHHHHHHHhcccccccc-ccccccHHHHHHhcCchHHHH
Confidence            5578889988887 5999 999999999999999999874

>PF13606 Ank_3: Ankyrin repeat

Probab=98.51  E-value=3.2e-08  Score=47.46  Aligned_cols=19  Identities=42%  Similarity=0.796  Sum_probs=17.5

Q ss_pred             CCCcHHHHHHhcCCccccC
Q psy9955          42 TGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        42 ~G~TpLH~AA~~G~~evvk   60 (60)
                      +|+||||+||.+|+.|+||
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~   19 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVK   19 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHH
Confidence            5899999999999999975

>KOG0509|consensus

Probab=98.46  E-value=1.3e-07  Score=70.67  Aligned_cols=52  Identities=23%  Similarity=0.274  Sum_probs=24.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      +++.|+|++..+..+.+.+        .--+.+||..|+|+|.+ |..|+||||+||.+|+
T Consensus       131 LlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~-D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  131 LLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLR-DNNGRTPLMWAAYKGF  190 (600)
T ss_pred             HHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCc-CCCCCCHHHHHHHhcc
Confidence            3444555555555444443        12334444445555554 5555555555554444

>KOG0195|consensus

Probab=98.45  E-value=4.5e-08  Score=69.47  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=45.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.+|.-+++......+.+        -+.++.||+..+|||+. +++|.||||+||+-||..|+
T Consensus        53 ll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnav-nehgntplhyacfwgydqia  116 (448)
T KOG0195|consen   53 LLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAV-NEHGNTPLHYACFWGYDQIA  116 (448)
T ss_pred             HHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchh-hccCCCchhhhhhhcHHHHH
Confidence            4567777777766554444        35899999999999999 99999999999999997764

>PHA02730 ankyrin-like protein; Provisional

Probab=98.43  E-value=1.3e-07  Score=71.28  Aligned_cols=36  Identities=11%  Similarity=-0.105  Sum_probs=30.6

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+++|++.|||+|.. |..|.||||+|+.+|+.++++
T Consensus       444 ivk~LIs~GADINak-D~~G~TPLh~Aa~~~~~eive  479 (672)
T PHA02730        444 VFDILSKYMDDIDMI-DNENKTLLYYAVDVNNIQFAR  479 (672)
T ss_pred             HHHHHHhcccchhcc-CCCCCCHHHHHHHhCCHHHHH
Confidence            478899999999998 899999999999888877653

>PHA02792 ankyrin-like protein; Provisional

Probab=98.40  E-value=2.2e-07  Score=69.81  Aligned_cols=57  Identities=12%  Similarity=-0.069  Sum_probs=43.0

Q ss_pred             hhhcCCChhhccchH--HHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFE--ERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~--~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+  .+++           .+.+++|+++|||+|.+ |..|.||||+|+.+|+.++++
T Consensus       358 LIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~k-D~~G~TPLh~Aa~~~n~eive  427 (631)
T PHA02792        358 ILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKI-DKHGRSILYYCIESHSVSLVE  427 (631)
T ss_pred             HHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccc-cccCcchHHHHHHcCCHHHHH
Confidence            457788887766542  2332           23478888999999998 999999999999999887763

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.37  E-value=3e-07  Score=68.43  Aligned_cols=38  Identities=26%  Similarity=0.457  Sum_probs=35.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.++.|++.|+++|.. |..|.||||+||.+|+.++|+
T Consensus        95 ~~~vk~LL~~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~  132 (664)
T PTZ00322         95 AVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVR  132 (664)
T ss_pred             HHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHCCCHHHHH
Confidence            35789999999999999 999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.35  E-value=1.3e-07  Score=45.41  Aligned_cols=19  Identities=37%  Similarity=0.606  Sum_probs=17.2

Q ss_pred             CCCcHHHHHHhcCCccccC
Q psy9955          42 TGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        42 ~G~TpLH~AA~~G~~evvk   60 (60)
                      +|.||||+||.+|+.++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~   19 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVK   19 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHH
Confidence            5899999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG1710|consensus

Probab=98.34  E-value=4.3e-07  Score=64.25  Aligned_cols=38  Identities=24%  Similarity=0.108  Sum_probs=35.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.+++||+.|+|||...+.++.||||+||-.|+.+|.
T Consensus        58 l~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvc   95 (396)
T KOG1710|consen   58 LTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVC   95 (396)
T ss_pred             HHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHH
Confidence            56899999999999998899999999999999999874

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.29  E-value=7.6e-07  Score=53.93  Aligned_cols=55  Identities=22%  Similarity=0.402  Sum_probs=41.0

Q ss_pred             hhcCCChhhccchHHHHH-------------HHHHHHHHHcCC---CCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM-------------LEDAKFWLSSGC---LGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m-------------l~~~~~Ll~~Ga---dvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ...|++++.....+.+.+             .+.+++|++.|+   +.+.+ +..|.||||+|+.+|+.+++
T Consensus        93 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~-~~~g~tpl~~A~~~~~~~~~  163 (235)
T COG0666          93 LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR-DEDGNTPLHWAALNGDADIV  163 (235)
T ss_pred             HHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc-CCCCCchhHHHHHcCchHHH
Confidence            445666655444444443             467999999999   44555 99999999999999998775

>KOG0502|consensus

Probab=98.29  E-value=2.3e-07  Score=63.66  Aligned_cols=57  Identities=16%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++..|.|+++.....++.+        .+.|++||..+.|||+- |-+|.|||-+|+..||.++||
T Consensus       179 LL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy-DwNGgTpLlyAvrgnhvkcve  243 (296)
T KOG0502|consen  179 LLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVY-DWNGGTPLLYAVRGNHVKCVE  243 (296)
T ss_pred             HHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee-ccCCCceeeeeecCChHHHHH
Confidence            3456777777776666665        45778888888888887 888888888888888887764

>KOG0512|consensus

Probab=98.26  E-value=6.3e-07  Score=59.80  Aligned_cols=53  Identities=23%  Similarity=0.166  Sum_probs=42.9

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYI   56 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~   56 (60)
                      ++-+|.+.++....+|+++        .+++-+||+.|+|||+. ...-.||||+||-+.+.
T Consensus       116 ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~  176 (228)
T KOG0512|consen  116 LLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNS  176 (228)
T ss_pred             HHHccCCcccccccCccchhhhhcccchhHHHHHHhccCccccc-ccccchhhHHhhcccch
Confidence            3457888888888888888        45888899999999998 88889999999866543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.25  E-value=1e-06  Score=49.14  Aligned_cols=34  Identities=41%  Similarity=0.597  Sum_probs=30.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.++.|++.|.+++.     |.||||+||.+|+.+++|
T Consensus        10 ~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~   43 (89)
T PF12796_consen   10 LEILKFLLEKGADINL-----GNTALHYAAENGNLEIVK   43 (89)
T ss_dssp             HHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHH
Confidence            6779999999988765     889999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214|consensus

Probab=98.04  E-value=3.8e-06  Score=51.34  Aligned_cols=38  Identities=26%  Similarity=0.209  Sum_probs=35.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+.+|+..||+++.+ |+.|-|||--|...||.++||
T Consensus        47 l~ilefli~iGA~i~~k-DKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen   47 LSILEFLISIGANIQDK-DKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             HHHHHHHHHhccccCCc-cccCCcHHHHHHHHhhHHHHH
Confidence            67889999999999999 999999999999999999885

>PHA02792 ankyrin-like protein; Provisional

Probab=98.00  E-value=5.9e-06  Score=62.21  Aligned_cols=49  Identities=6%  Similarity=0.062  Sum_probs=43.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHh
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAA   52 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~   52 (60)
                      +++.|.|+++....+++++        .+.+++|++.|+++|.. +..|.||||+|+.
T Consensus       396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~k-D~~G~TpL~~A~~  452 (631)
T PHA02792        396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINIT-TKYGSTCIGICVI  452 (631)
T ss_pred             HHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHH
Confidence            3578899999888888887        45789999999999999 9999999999975

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=97.95  E-value=1.1e-05  Score=45.08  Aligned_cols=36  Identities=33%  Similarity=0.471  Sum_probs=23.6

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +.++.|++.|++++.. +..|.||+|.|+..|+.+++
T Consensus        54 ~~~~~ll~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~   89 (126)
T cd00204          54 EIVKLLLEKGADVNAR-DKDGNTPLHLAARNGNLDVV   89 (126)
T ss_pred             HHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCcHHHH
Confidence            4666666667666666 66666777777766665554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0818|consensus

Probab=97.89  E-value=1.2e-05  Score=60.03  Aligned_cols=35  Identities=40%  Similarity=0.526  Sum_probs=30.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYI   56 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~   56 (60)
                      ++..-.||..||++|..|+.+|.||||+||..|..
T Consensus       146 let~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~  180 (669)
T KOG0818|consen  146 LETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQI  180 (669)
T ss_pred             HHHHHHHHHcccccCCCCcccCCchhHHHHhccch
Confidence            56677888999999999999999999999998865

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=97.88  E-value=1.4e-05  Score=48.32  Aligned_cols=35  Identities=34%  Similarity=0.438  Sum_probs=31.8

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC-----cccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGY-----IKVM   59 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~-----~evv   59 (60)
                      .++.++..|++++.. +..|.||||+|+.+|+     .+++
T Consensus        88 ~~~~l~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~  127 (235)
T COG0666          88 IVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVA  127 (235)
T ss_pred             HHHHHHHcCCCcccc-cCCCCcHHHHHHhcCCcccchHHHH
Confidence            458999999999999 9999999999999999     6665

>KOG0502|consensus

Probab=97.87  E-value=8.1e-06  Score=56.19  Aligned_cols=54  Identities=15%  Similarity=0.102  Sum_probs=48.9

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIK   57 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~e   57 (60)
                      ++.+++|++..+-.+.+++        .++++.||++|||++.. +..|.+++-.|.+.||..
T Consensus       212 LL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e-~dsGy~~mdlAValGyr~  273 (296)
T KOG0502|consen  212 LLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQE-DDSGYWIMDLAVALGYRI  273 (296)
T ss_pred             HHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccc-cccCCcHHHHHHHhhhHH
Confidence            5678999999998888887        46999999999999999 999999999999999973

>KOG0510|consensus

Probab=97.83  E-value=1e-05  Score=62.67  Aligned_cols=37  Identities=30%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+.+..|+..|+++|.+ +.++.||||+||..|..+.|
T Consensus       286 ~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv  322 (929)
T KOG0510|consen  286 PESVDNLLGFGASINSK-NKDEESPLHFAAIYGRINTV  322 (929)
T ss_pred             hhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHHHH
Confidence            56788888888888888 88888888888888877665

>KOG0510|consensus

Probab=97.82  E-value=1.1e-05  Score=62.50  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      .+..+.|++.|+|||.. |..|.||||.||..++.|.
T Consensus       134 ~s~L~~Ll~~~~dvnl~-de~~~TpLh~A~~~~~~E~  169 (929)
T KOG0510|consen  134 YSCLKLLLDYGADVNLE-DENGFTPLHLAARKNKVEA  169 (929)
T ss_pred             HHHHHHHHHhcCCcccc-ccCCCchhhHHHhcChHHH
Confidence            56888999999999998 9999999999999988774

>KOG0195|consensus

Probab=97.72  E-value=2.5e-05  Score=55.72  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ...++.||..|+-||+. +.-.-||||.||+.||.+||
T Consensus        47 ~aivemll~rgarvn~t-nmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen   47 VAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             HHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHH
Confidence            34689999999999999 99899999999999999987

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=97.71  E-value=3e-05  Score=57.70  Aligned_cols=39  Identities=26%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             HHHHHHHHHcCCCCCCCCC-------------CCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNP-------------KTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d-------------~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.++.|+++||++|.+..             ..|.||||+|++.|+.++++
T Consensus       141 ~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~  192 (743)
T TIGR00870       141 YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVA  192 (743)
T ss_pred             HHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHH
Confidence            5799999999999997521             36999999999999998864

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0511|consensus

Probab=97.63  E-value=3.7e-05  Score=56.09  Aligned_cols=46  Identities=20%  Similarity=0.264  Sum_probs=42.3

Q ss_pred             hhhccchHHHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          10 PEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        10 iea~r~~~~~~ml~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+++|.+.    ++.++.|++.|.+||+. |+....||.+|+-.||.++||
T Consensus        41 ceacR~GD----~d~v~~LVetgvnVN~v-D~fD~spL~lAsLcGHe~vvk   86 (516)
T KOG0511|consen   41 CEACRAGD----VDRVRYLVETGVNVNAV-DRFDSSPLYLASLCGHEDVVK   86 (516)
T ss_pred             HHHhhccc----HHHHHHHHHhCCCcchh-hcccccHHHHHHHcCcHHHHH
Confidence            46777777    88999999999999999 999999999999999999886

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=97.56  E-value=4.1e-05  Score=56.98  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             HHHHHHHHHc--CCCCCCCCCCCCCcHHH-HHHhcCCccccC
Q psy9955          22 LEDAKFWLSS--GCLGDVPNPKTGASALH-VAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~--Gadvn~~~d~~G~TpLH-~AA~~G~~evvk   60 (60)
                      ++.++.+++.  +.++|+. |..|.|||| .|+.+++.++++
T Consensus        30 ~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~   70 (743)
T TIGR00870        30 LASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTE   70 (743)
T ss_pred             HHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHH
Confidence            4577888888  8899988 899999999 777888877763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0506|consensus

Probab=97.51  E-value=3.6e-05  Score=57.29  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=34.6

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +..++.+.-+|.|++.. |-+.+|+||+||+.||.+++|
T Consensus       519 ~~alrRf~l~g~D~~~~-DyD~RTaLHvAAaEG~v~v~k  556 (622)
T KOG0506|consen  519 LSALRRFALQGMDLETK-DYDDRTALHVAAAEGHVEVVK  556 (622)
T ss_pred             HHHHHHHHHhccccccc-ccccchhheeecccCceeHHH
Confidence            55788899999999999 999999999999999999875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=97.49  E-value=0.00016  Score=40.31  Aligned_cols=37  Identities=30%  Similarity=0.486  Sum_probs=33.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+.++.|++.|.+.+.. +..|.||||.|+.++..+++
T Consensus        20 ~~~i~~li~~~~~~~~~-~~~g~~~l~~a~~~~~~~~~   56 (126)
T cd00204          20 LEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIV   56 (126)
T ss_pred             HHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHcCCHHHH
Confidence            36789999999999888 99999999999999988765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0783|consensus

Probab=97.43  E-value=8e-05  Score=58.54  Aligned_cols=37  Identities=27%  Similarity=0.254  Sum_probs=33.7

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ..++.||++|+|+++++-+.|+||||.|-+.|+.|++
T Consensus        66 ~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca  102 (1267)
T KOG0783|consen   66 SFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCA  102 (1267)
T ss_pred             HHHHHHHhcCceeeeccccccchHhhHhhhhchHHHH
Confidence            3688999999999999778899999999999999875

>KOG4214|consensus

Probab=97.43  E-value=4.2e-05  Score=46.82  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.|+.....|.+||...  .|+||||+||-.|.++++
T Consensus        15 ~DeVk~~v~~g~nVn~~~--ggR~plhyAAD~GQl~il   50 (117)
T KOG4214|consen   15 IDEVKQSVNEGLNVNEIY--GGRTPLHYAADYGQLSIL   50 (117)
T ss_pred             HHHHHHHHHccccHHHHh--CCcccchHhhhcchHHHH
Confidence            677899999998988763  899999999999998875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=97.19  E-value=0.00012  Score=38.03  Aligned_cols=18  Identities=39%  Similarity=0.678  Sum_probs=15.4

Q ss_pred             CCcHHHHHHhcCCccccC
Q psy9955          43 GASALHVAAAKGYIKVMK   60 (60)
Q Consensus        43 G~TpLH~AA~~G~~evvk   60 (60)
                      |.||||+||..|+.++++
T Consensus         1 g~t~lh~A~~~g~~~~~~   18 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVK   18 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHH
T ss_pred             CChHHHHHHHhCCHHHHH
Confidence            789999999999999874

...

>KOG3676|consensus

Probab=97.06  E-value=0.00064  Score=52.49  Aligned_cols=54  Identities=20%  Similarity=0.270  Sum_probs=42.0

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCC--CCCCCCCCCCcHHHHHHhcCCccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCL--GDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gad--vn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      +.+|.|+++-+..|.+++        .+.-.++|+.|++  ..++ |++|-|||-.||.-|..+|
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~-N~qgLTPLtLAaklGk~em  323 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVR-NNQGLTPLTLAAKLGKKEM  323 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccCCCChHHHHHHhhhHHH
Confidence            457888888888887776        3456777888888  7777 8888888888888887665

>KOG0522|consensus

Probab=96.91  E-value=0.00074  Score=50.49  Aligned_cols=50  Identities=22%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             ChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           9 NPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         9 ~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .||..+.-+++++        .+.++.|+.+|||+-.+ ++.|+||||-|++.|..+++
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~k-N~~gWs~L~EAv~~g~~q~i  104 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIK-NNEGWSPLHEAVSTGNEQII  104 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccc-ccccccHHHHHHHcCCHHHH
Confidence            4444444444444        45899999999999999 99999999999999987654

>KOG0507|consensus

Probab=96.86  E-value=0.00056  Score=53.00  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+.+|+||.++..+|+. +..|.||||.||+.||.|||
T Consensus        95 ~e~vkmll~q~d~~na~-~~e~~tplhlaaqhgh~dvv  131 (854)
T KOG0507|consen   95 LEIVKMLLLQTDILNAV-NIENETPLHLAAQHGHLEVV  131 (854)
T ss_pred             chHHHHHHhcccCCCcc-cccCcCccchhhhhcchHHH
Confidence            56778888888777887 88888888888888888775

>smart00248 ANK ankyrin repeats

Probab=96.85  E-value=0.00051  Score=28.89  Aligned_cols=19  Identities=42%  Similarity=0.747  Sum_probs=16.3

Q ss_pred             CCCcHHHHHHhcCCccccC
Q psy9955          42 TGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        42 ~G~TpLH~AA~~G~~evvk   60 (60)
                      .|.||||+|+..|+.++++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~   19 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVK   19 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHH
Confidence            4789999999999988864

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0818|consensus

Probab=96.81  E-value=0.00087  Score=50.36  Aligned_cols=56  Identities=13%  Similarity=0.103  Sum_probs=42.6

Q ss_pred             hhhcCCChhhccchHHHHHHH---------HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSMLE---------DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~ml~---------~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.+|.+.+--.....++=|+         -+++|+-+|||++++ |..|.||+-+|-..||-++.
T Consensus       152 ll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~-d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  152 LLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQ-DSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCC-CCCCCcHHHHHHhcCchHHH
Confidence            456677665555443332233         578999999999999 99999999999999998764

>KOG0514|consensus

Probab=96.75  E-value=0.00075  Score=49.09  Aligned_cols=58  Identities=14%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             hhhhcCC-ChhhccchHHHHH-------------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           2 QRFVQGI-NPEDARTFEERSM-------------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         2 ~~~~qGi-~iea~r~~~~~~m-------------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      |++.-|+ ++|.-.+++-+.+             ++.|..|...| |||++-...|.|+|++|...|..++||
T Consensus       286 ~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk  357 (452)
T KOG0514|consen  286 ILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVK  357 (452)
T ss_pred             HHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHH
Confidence            4566677 7777777766554             24677777777 888887778999999999999888875

>KOG0507|consensus

Probab=96.68  E-value=0.00044  Score=53.53  Aligned_cols=51  Identities=22%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             ChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           9 NPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         9 ~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .++..+..+.+.+        .+.+++|++..+-++.+ +..|.+|||+||.+|+.|+||
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~-d~kg~~plhlaaw~g~~e~vk   99 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC-DTKGILPLHLAAWNGNLEIVK   99 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh-hccCcceEEehhhcCcchHHH
Confidence            4444445555554        35889999999999999 899999999999999999986

>KOG3676|consensus

Probab=96.61  E-value=0.002  Score=49.85  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=27.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHH
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAA   51 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA   51 (60)
                      .+++++|++.|||+|++ |..|+|-||+-.
T Consensus       253 ~eivrlLl~~gAd~~aq-DS~GNTVLH~lV  281 (782)
T KOG3676|consen  253 PEIVRLLLAHGADPNAQ-DSNGNTVLHMLV  281 (782)
T ss_pred             HHHHHHHHhcCCCCCcc-ccCCChHHHHHH
Confidence            57999999999999999 999999999865

>KOG0520|consensus

Probab=96.59  E-value=0.00067  Score=53.41  Aligned_cols=29  Identities=31%  Similarity=0.438  Sum_probs=26.0

Q ss_pred             HcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          30 SSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        30 ~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      -.|..++.+ |..|+||||+|+..|+..++
T Consensus       629 ~~~~ai~i~-D~~G~tpL~wAa~~G~e~l~  657 (975)
T KOG0520|consen  629 ADGVAIDIR-DRNGWTPLHWAAFRGREKLV  657 (975)
T ss_pred             ecccccccc-cCCCCcccchHhhcCHHHHH
Confidence            568889999 99999999999999998764

>KOG2384|consensus

Probab=96.58  E-value=0.0022  Score=43.19  Aligned_cols=53  Identities=17%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             CCChhhccchHHHHHH--------HHHHHHHHcC-CCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           7 GINPEDARTFEERSML--------EDAKFWLSSG-CLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         7 Gi~iea~r~~~~~~ml--------~~~~~Ll~~G-advn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++|++.+.-+|+.+|        +.+++|+..| +.|.+. |..|.+.+.+|=.+|+.++|+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~-d~ssldaaqlaek~g~~~fvh   63 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVT-DESSLDAAQLAEKGGAQAFVH   63 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccc-ccccchHHHHHHhcChHHHHH
Confidence            5788888888888875        5889999999 899999 999999999999999988763

>KOG2384|consensus

Probab=96.39  E-value=0.0014  Score=44.17  Aligned_cols=28  Identities=25%  Similarity=0.118  Sum_probs=25.2

Q ss_pred             cCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          31 SGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        31 ~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.++|++ |..|+|||+.||..|..++|
T Consensus         1 se~~in~r-D~fgWTalmcaa~eg~~eav   28 (223)
T KOG2384|consen    1 SEGNINAR-DAFGWTALMCAAMEGSNEAV   28 (223)
T ss_pred             CCCCccch-hhhcchHHHHHhhhcchhHH
Confidence            36799999 99999999999999988775

>KOG0506|consensus

Probab=96.37  E-value=0.0013  Score=49.15  Aligned_cols=57  Identities=23%  Similarity=0.205  Sum_probs=48.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.||.|++..+.-..+.+        .+.+++|++. +.|++.+ |+-|+|||--|-..+|.+|+|
T Consensus       525 f~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~k-DRw~rtPlDdA~~F~h~~v~k  590 (622)
T KOG0506|consen  525 FALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPK-DRWGRTPLDDAKHFKHKEVVK  590 (622)
T ss_pred             HHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChh-hccCCCcchHhHhcCcHHHHH
Confidence            4567888888877776666        5689999965 8899999 999999999999999999875

>KOG0521|consensus

Probab=96.36  E-value=0.002  Score=49.85  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ...+||++|+++|.. |..|.||||.+...|++..+
T Consensus       671 ~~e~ll~~ga~vn~~-d~~g~~plh~~~~~g~~~~~  705 (785)
T KOG0521|consen  671 AVELLLQNGADVNAL-DSKGRTPLHHATASGHTSIA  705 (785)
T ss_pred             HHHHHHhcCCcchhh-hccCCCcchhhhhhcccchh
Confidence            678999999999999 99999999999999998764

>KOG0515|consensus

Probab=96.20  E-value=0.0039  Score=47.39  Aligned_cols=46  Identities=24%  Similarity=0.203  Sum_probs=36.4

Q ss_pred             hhhccchHHHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          10 PEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        10 iea~r~~~~~~ml~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +|++=+.+    ++.|+..+..=-|+..+ +..|-|+||-|.|-||++|||
T Consensus       555 LDaaLeGE----ldlVq~~i~ev~DpSqp-NdEGITaLHNAiCaghyeIVk  600 (752)
T KOG0515|consen  555 LDAALEGE----LDLVQRIIYEVTDPSQP-NDEGITALHNAICAGHYEIVK  600 (752)
T ss_pred             Hhhhhcch----HHHHHHHHHhhcCCCCC-CccchhHHhhhhhcchhHHHH
Confidence            44444445    45677777666888888 999999999999999999986

>KOG1710|consensus

Probab=96.02  E-value=0.0051  Score=43.96  Aligned_cols=36  Identities=28%  Similarity=0.207  Sum_probs=31.7

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+..||+.-..+|.. |.+|.|||..||++|+.+.|+
T Consensus        27 ~a~~LLs~vr~vn~~-D~sGMs~LahAaykGnl~~v~   62 (396)
T KOG1710|consen   27 AALALLSTVRQVNQR-DPSGMSVLAHAAYKGNLTLVE   62 (396)
T ss_pred             HHHHHHHHhhhhhcc-CCCcccHHHHHHhcCcHHHHH
Confidence            567788877779999 999999999999999998874

>KOG0705|consensus

Probab=95.91  E-value=0.011  Score=45.17  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=25.6

Q ss_pred             HHHHHHHcCCCCC---CCCCCCCCcHHHHHHhcCCccc
Q psy9955          24 DAKFWLSSGCLGD---VPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus        24 ~~~~Ll~~Gadvn---~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      .+-+||.+|-..+   ..-+.+|+|+||+||..|++.+
T Consensus       639 t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl  676 (749)
T KOG0705|consen  639 TAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVL  676 (749)
T ss_pred             HHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhH
Confidence            5567888886642   2235667999999999998765

>PF13606 Ank_3: Ankyrin repeat

Probab=95.64  E-value=0.013  Score=27.57  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=14.3

Q ss_pred             HHHHHHHHHcCCCCCC
Q psy9955          22 LEDAKFWLSSGCLGDV   37 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~   37 (60)
                      .+.+++|+++|+|+|.
T Consensus        15 ~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen   15 IEIVKYLLEHGADVNA   30 (30)
T ss_pred             HHHHHHHHHcCCCCCC
Confidence            6789999999999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=95.36  E-value=0.024  Score=26.62  Aligned_cols=17  Identities=18%  Similarity=0.102  Sum_probs=15.6

Q ss_pred             HHHHHHHHHcCCCCCCC
Q psy9955          22 LEDAKFWLSSGCLGDVP   38 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~   38 (60)
                      .+.+++|++.|+++|.+
T Consensus        15 ~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen   15 PDIVKLLLKHGADINAR   31 (33)
T ss_dssp             HHHHHHHHHTTSCTTCB
T ss_pred             HHHHHHHHHCcCCCCCC
Confidence            56899999999999988

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG4369|consensus

Probab=94.76  E-value=0.017  Score=47.44  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      |.+.+|+..|++++-+ |+.|.+||.+||--||..||
T Consensus       771 e~vellv~rganiehr-dkkgf~plImaatagh~tvV  806 (2131)
T KOG4369|consen  771 EEVELLVVRGANIEHR-DKKGFVPLIMAATAGHITVV  806 (2131)
T ss_pred             HHHHHHHHhccccccc-ccccchhhhhhcccCchHHH
Confidence            4577777788888777 77888888888877777665

>KOG4369|consensus

Probab=94.51  E-value=0.0064  Score=49.78  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++|.+||..|++-+.+ +....|||-.|+..||+++|
T Consensus       838 ~vvelLl~~gankehr-nvsDytPlsla~Sggy~~iI  873 (2131)
T KOG4369|consen  838 RVVELLLNAGANKEHR-NVSDYTPLSLARSGGYTKII  873 (2131)
T ss_pred             hHHHHHHHhhcccccc-chhhcCchhhhcCcchHHHH
Confidence            3555555555555555 55555566555555555554

>KOG0522|consensus

Probab=93.55  E-value=0.037  Score=41.64  Aligned_cols=30  Identities=20%  Similarity=0.248  Sum_probs=24.8

Q ss_pred             HHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          29 LSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        29 l~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+.+..++.. |..|.||||.|+.-|+.+.+
T Consensus        42 ~~~~~~id~~-D~~g~TpLhlAV~Lg~~~~a   71 (560)
T KOG0522|consen   42 AKVSLVIDRR-DPPGRTPLHLAVRLGHVEAA   71 (560)
T ss_pred             hhhhceeccc-cCCCCccHHHHHHhcCHHHH
Confidence            3456678888 99999999999999998754

>KOG0521|consensus

Probab=89.41  E-value=0.15  Score=39.76  Aligned_cols=55  Identities=13%  Similarity=0.116  Sum_probs=42.4

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      ++..|.+++..+..+.+++        ..-+.+|+++||+.++- +.+|.+||++|....+.++
T Consensus       675 ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~-~~~~~~~l~~a~~~~~~d~  737 (785)
T KOG0521|consen  675 LLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF-DPDGKLPLDIAMEAANADI  737 (785)
T ss_pred             HHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccccc-CccCcchhhHHhhhccccH
Confidence            4556777887777766555        33678899999999999 9999999999965555544

>KOG2505|consensus

Probab=89.29  E-value=0.27  Score=37.26  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=22.0

Q ss_pred             HHHHHHHcCCCCCCC-----CCCCCCcHHHHHHhcCCcccc
Q psy9955          24 DAKFWLSSGCLGDVP-----NPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~-----~d~~G~TpLH~AA~~G~~evv   59 (60)
                      -+..|.+++++.|..     .+-.-.||||+||.+|..++|
T Consensus       406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v  446 (591)
T KOG2505|consen  406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCV  446 (591)
T ss_pred             HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHH
Confidence            456666777666432     122346778888777776654

>KOG0782|consensus

Probab=89.29  E-value=0.14  Score=39.69  Aligned_cols=33  Identities=33%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             HHHHHHHcCCC--CCCCCCCCCCcHHHHHHhcCCcc
Q psy9955          24 DAKFWLSSGCL--GDVPNPKTGASALHVAAAKGYIK   57 (60)
Q Consensus        24 ~~~~Ll~~Gad--vn~~~d~~G~TpLH~AA~~G~~e   57 (60)
                      .|+++|++|-.  +|.. +.+|.|.||-||+.++..
T Consensus       914 ivkyildh~p~elld~~-de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  914 IVKYILDHGPSELLDMA-DETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhcCCHHHHHHH-hhhhhHHHHHHHHhcchH
Confidence            55666666544  2555 566666666666655543

>KOG0783|consensus

Probab=86.74  E-value=0.75  Score=37.17  Aligned_cols=49  Identities=20%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             hhhcCCChhhccch-HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHh
Q psy9955           3 RFVQGINPEDARTF-EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAA   52 (60)
Q Consensus         3 ~~~qGi~iea~r~~-~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~   52 (60)
                      ++-.|||+..-+.. +++++        ++++.+||.+|+.+... |+.|..||.+-+.
T Consensus        71 LlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~-Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   71 LLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIK-DKEGLSPLQFLSR  128 (1267)
T ss_pred             HHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEe-cccCCCHHHHHhh
Confidence            35568888776664 56665        67999999999999999 9999999998776

>KOG0705|consensus

Probab=86.12  E-value=0.57  Score=36.22  Aligned_cols=36  Identities=19%  Similarity=0.108  Sum_probs=32.0

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .-.++|+=+|+|+-++ |..|+|+|-+|-..|..|++
T Consensus       675 vl~QLLiWyg~dv~~r-da~g~t~l~yar~a~sqec~  710 (749)
T KOG0705|consen  675 VLAQLLIWYGVDVMAR-DAHGRTALFYARQAGSQECI  710 (749)
T ss_pred             hHHHHHHHhCccceec-ccCCchhhhhHhhcccHHHH
Confidence            3577888999999999 99999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	60
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-12

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	60
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.0 bits (118), Expect = 4e-09
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 22  LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           L+     L+S  +  V        A  +AA  G++ V+ 
Sbjct: 108 LDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLN 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	60
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.4
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.39
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.36
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.28
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.2
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.2
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.16
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.11
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.1
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.1
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.1
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.08
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.06
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.06
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.06
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.03
2rfa_A	232	Transient receptor potential cation channel subfa	99.03
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.03
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.02
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.02
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.02
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.01
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	98.99
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	98.99
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.99
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	98.99
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.99
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	98.99
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	98.98
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	98.98
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	98.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	98.96
2etb_A	256	Transient receptor potential cation channel subfam	98.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.96
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	98.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	98.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	98.95
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	98.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	98.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	98.93
2rfa_A	232	Transient receptor potential cation channel subfa	98.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	98.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	98.93
2pnn_A	273	Transient receptor potential cation channel subfa	98.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	98.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	98.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	98.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	98.92
2etb_A	256	Transient receptor potential cation channel subfam	98.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.9
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	98.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	98.87
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	98.87
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.86
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	98.81
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	98.8
2pnn_A	273	Transient receptor potential cation channel subfa	98.8
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	98.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	98.77
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.71
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	98.63
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.4
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.06

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.40  E-value=1.4e-13  Score=84.80  Aligned_cols=54  Identities=22%  Similarity=0.281  Sum_probs=28.4

Q ss_pred             hcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           5 VQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         5 ~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++|++++.....+.+++        .+.+++|+++|+|+|.+ |..|.||||+||.+|+.++|
T Consensus        58 ~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v  119 (169)
T 4gpm_A           58 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVV  119 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             hcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence            44444444444444443        33555555555555555 55555555555555555554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.39  E-value=2.1e-13  Score=75.21  Aligned_cols=57  Identities=26%  Similarity=0.374  Sum_probs=50.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        21 Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~~~~~~~~   85 (93)
T 1n0q_A           21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVK   85 (93)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678999988888777776        46899999999999999 999999999999999998864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.36  E-value=3.2e-13  Score=83.17  Aligned_cols=57  Identities=19%  Similarity=0.256  Sum_probs=52.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++.|+|+|.+ |..|.||||+|+.+|+.++++
T Consensus        89 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~g~~~iv~  153 (169)
T 4gpm_A           89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEVVK  153 (169)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            5788999999988888887        56999999999999999 999999999999999999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.28  E-value=1.5e-12  Score=74.50  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        26 ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A~~~~~~~~v~   90 (123)
T 3aaa_C           26 YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVK   90 (123)
T ss_dssp             HHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678888888877777776        46889999999999999 999999999999999998864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.23  E-value=4.2e-12  Score=72.19  Aligned_cols=57  Identities=18%  Similarity=0.245  Sum_probs=47.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus        43 Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~  107 (110)
T 2zgd_A           43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAE  107 (110)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-ccCCCcHHHHHHHcCCHHHHH
Confidence            5677888887777666666        46889999999999998 899999999999999988763

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.22  E-value=4.8e-12  Score=74.19  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=43.3

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        54 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~  118 (156)
T 1bd8_A           54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVS  118 (156)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHhChHHHHH
Confidence            4567777777766666665        45788888888888888 888888888888888887763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.21  E-value=6e-12  Score=73.17  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.+++
T Consensus        33 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v   96 (136)
T 2jab_A           33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIA   96 (136)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHH
Confidence            3445555555554444444        34556666666666666 66666666666666665554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.20  E-value=6.2e-12  Score=79.25  Aligned_cols=57  Identities=21%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        ++.+++|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus        56 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~  120 (239)
T 1ycs_B           56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCK  120 (239)
T ss_dssp             HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567777777777666666        45888888888888888 888888888888888888763

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.20  E-value=3.5e-12  Score=82.73  Aligned_cols=57  Identities=18%  Similarity=0.204  Sum_probs=39.9

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++|++.|+|+|.+ +..|.||||+||.+|+.++|+
T Consensus       138 Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~  202 (269)
T 4b93_B          138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVE  202 (269)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHH
Confidence            3556777776666666655        24677777777777777 777777777777777777663

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.19  E-value=7.5e-12  Score=74.20  Aligned_cols=56  Identities=20%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             hhhcCCChhhccchHHH-HH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEER-SM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~-~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|++++.....+.+ ++        .+.+++|+++|+++|.+ |..|.||||+|+.+|+.+++
T Consensus        63 Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~v  127 (156)
T 1bi7_B           63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVDLAEELGHRDVA  127 (156)
T ss_dssp             HHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHhCHHHHH
Confidence            45567777766666655 44        45777777778877777 77778888888777777765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.18  E-value=8.4e-12  Score=72.55  Aligned_cols=57  Identities=19%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             hhhcCCChhhccch-HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTF-EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~-~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++..... +.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        63 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~  128 (136)
T 1d9s_A           63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIAR  128 (136)
T ss_dssp             HHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCC-SSSSSCHHHHHHHHTCHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence            45567777766666 55555        45777888888888887 778888888888888777653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.18  E-value=1.2e-11  Score=73.25  Aligned_cols=57  Identities=23%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        61 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~  125 (165)
T 3twr_A           61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICK  125 (165)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567788877777666665        45788888888888888 888888888888888888763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.18  E-value=9.4e-12  Score=78.93  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=43.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        ++.+++|++.|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus        40 Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~-d~~g~tpLh~A~~~g~~~~v~  104 (229)
T 2vge_A           40 AVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPLHCAASCNDTVICM  104 (229)
T ss_dssp             HHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567777777766666665        45778888888888888 788888888888888877763

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.18  E-value=1.2e-11  Score=72.70  Aligned_cols=55  Identities=22%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|.+++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus        57 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v  119 (162)
T 1ihb_A           57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVV  119 (162)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHH
Confidence            445566555555444444        34666666666666666 66666666666666666654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.18  E-value=8.8e-12  Score=81.41  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=48.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++.|+|+|.+ |..|.||||+|+.+|+.++++
T Consensus       191 Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~~v~  255 (278)
T 1dcq_A          191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEE  255 (278)
T ss_dssp             HHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-cCCCCCHHHHHHHcCCHHHHH
Confidence            4677888888888777777        46889999999999999 999999999999999988864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.16  E-value=9.7e-12  Score=72.02  Aligned_cols=57  Identities=21%  Similarity=0.263  Sum_probs=44.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus        29 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~   93 (137)
T 3c5r_A           29 LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHDAAKNGHVDIVK   93 (137)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567777777766666665        45788888888888888 888888888888888888763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.16  E-value=1.6e-11  Score=72.27  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=17.9

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +.+++|++.|+++|.+ +..|.||||+|+.+|+.+++
T Consensus       114 ~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B          114 EVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHH
Confidence            3444555555555554 45555555555555554443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.16  E-value=1.9e-11  Score=71.92  Aligned_cols=57  Identities=14%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        53 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~  117 (153)
T 1awc_B           53 LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVE  117 (153)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678888887777666665        77999999999999999 999999999999999999874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.16  E-value=1.9e-11  Score=71.06  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=49.8

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus        66 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpl~~A~~~~~~~~~~  130 (136)
T 2jab_A           66 LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAE  130 (136)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCc-CCCCCCHHHHHHHCCCHHHHH
Confidence            5678888888877776666        56899999999999999 999999999999999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.14  E-value=1.8e-11  Score=79.52  Aligned_cols=39  Identities=15%  Similarity=0.195  Sum_probs=35.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.|++||++|+|+|.+++..|.||||+||.+|+.++|+
T Consensus        38 ~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~   76 (337)
T 4g8k_A           38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE   76 (337)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHH
Confidence            568999999999999995567999999999999999874

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.13  E-value=2.6e-11  Score=72.89  Aligned_cols=56  Identities=14%  Similarity=0.067  Sum_probs=39.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++.|.+++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus        58 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v  121 (179)
T 3f6q_A           58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVA  121 (179)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHH
Confidence            4556777766666555555        45777777778887777 77778888888877777765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.13  E-value=1.9e-11  Score=77.62  Aligned_cols=57  Identities=23%  Similarity=0.347  Sum_probs=47.9

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++|+
T Consensus        59 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~  123 (299)
T 1s70_B           59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAE  123 (299)
T ss_dssp             HHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHH
Confidence            5677888888777776666        56889999999999998 999999999999999988864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.12  E-value=1.4e-11  Score=72.96  Aligned_cols=57  Identities=19%  Similarity=0.371  Sum_probs=48.2

Q ss_pred             hhhcCCChhhccchHHHHH-------HHHHHHHHHcCCCCCCCCCCCCCc-HHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM-------LEDAKFWLSSGCLGDVPNPKTGAS-ALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m-------l~~~~~Ll~~Gadvn~~~d~~G~T-pLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++       .+.+++|++.|+++|.+ +..|.| |||+|+.+|+.++|+
T Consensus        31 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~-d~~g~ttpL~~A~~~~~~~~v~   95 (156)
T 1bi7_B           31 LLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLV   95 (156)
T ss_dssp             HHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHHCCCHHHHH
Confidence            4667888777766655554       67899999999999999 999999 999999999999874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.12  E-value=1.3e-11  Score=71.67  Aligned_cols=57  Identities=19%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             hhhcCCChhhccchHHHHH-------HHHHHHHHHcCCCCCCCCCCC-CCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM-------LEDAKFWLSSGCLGDVPNPKT-GASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m-------l~~~~~Ll~~Gadvn~~~d~~-G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++       .+.+++|++.|+++|.+ +.. |.||||+|+.+|+.++++
T Consensus        31 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~v~   95 (136)
T 1d9s_A           31 LLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLV   95 (136)
T ss_dssp             HHHTTCCTTCCCTTCCTTTTTSTTSCHHHHHHHHHHTCCSSCC-BTTTTBCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCcCCcCCCCCCHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCCHHHHHHHcCCHHHHH
Confidence            4567777776665555444       57899999999999999 888 999999999999998864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.12  E-value=4.3e-11  Score=65.75  Aligned_cols=38  Identities=37%  Similarity=0.530  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        15 ~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~~~~~~v~   52 (93)
T 1n0q_A           15 LEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVK   52 (93)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            56799999999999999 999999999999999999874

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.12  E-value=3.4e-11  Score=73.10  Aligned_cols=54  Identities=17%  Similarity=0.152  Sum_probs=44.1

Q ss_pred             CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           7 GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         7 Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      |.+++.....+.+++        .+.+++|++.|+++|..++..|.||||+|+.+|+.++++
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~  127 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE  127 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHH
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHH
Confidence            778887777777766        468899999999999883388999999999999988764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.12  E-value=4.7e-11  Score=74.20  Aligned_cols=57  Identities=18%  Similarity=0.030  Sum_probs=48.4

Q ss_pred             hhhcCCChhhccchHH-HHH-------------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEE-RSM-------------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~-~~m-------------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|+|+++....+. +++             .+.+++|++ .|+|+|.+ |..|.||||+|+..|+.++|+
T Consensus       100 Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~-d~~G~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTALEFVKRCQKPIALK  171 (186)
T ss_dssp             HHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC-CTTSCCHHHHHHTTTCHHHHH
T ss_pred             HHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678999998887776 333             457889999 99999999 999999999999999998864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.11  E-value=2.9e-11  Score=77.33  Aligned_cols=57  Identities=18%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus       233 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~-d~~g~t~L~~A~~~~~~~~v~  297 (351)
T 3utm_A          233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCR  297 (351)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence            4678888888777777776        46899999999999999 999999999999999998874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.11  E-value=2.8e-11  Score=71.99  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=15.7

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      .+++|++.|++++.. +..|.||||+|+.+|+.++
T Consensus       117 ~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A          117 CVEALLARGADLTTE-ADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             HHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCCcccc-CCCCCCHHHHHHHhCcHHH
Confidence            444444444444444 4444444444444444444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.11  E-value=3.8e-11  Score=76.26  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++ |.+++.....+.+++        .+.+++|+++|+++|.+++..|.||||+||.+|+.++|+
T Consensus        64 Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~  128 (244)
T 3ui2_A           64 LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE  128 (244)
T ss_dssp             TTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHH
T ss_pred             HHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            344 888888887777776        568999999999999993488999999999999998874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.11  E-value=3.7e-11  Score=78.07  Aligned_cols=57  Identities=14%  Similarity=0.056  Sum_probs=45.4

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.++.|++. |+++|.+ |..|.||||+|+.+|+.++||
T Consensus       225 Ll~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~-d~~G~TpL~~A~~~g~~~iv~  290 (337)
T 4g8k_A          225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIAE  290 (337)
T ss_dssp             HHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567888888777777766        3577888864 8899998 889999999999999988874

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.11  E-value=2.8e-11  Score=84.02  Aligned_cols=57  Identities=16%  Similarity=0.130  Sum_probs=50.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.++|        .+.+++||++|||+|.. |..|.||||+|+.+|+.++++
T Consensus       193 Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~  257 (497)
T 3lvq_E          193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEE  257 (497)
T ss_dssp             HHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678899998888888887        56899999999999999 999999999999999998864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.10  E-value=3.1e-11  Score=75.50  Aligned_cols=57  Identities=11%  Similarity=0.036  Sum_probs=42.3

Q ss_pred             hhhcCCChhhccch-HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTF-EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~-~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++..... +.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus       177 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc-ccCCCCHHHHHHHcCCcHHHH
Confidence            45667777776543 54554        45788888888888888 888888888888888887763

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.10  E-value=4.2e-11  Score=75.47  Aligned_cols=56  Identities=18%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++.|.+++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+|+
T Consensus       176 Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~g~~~i~  239 (253)
T 1yyh_A          176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIV  239 (253)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc-ccCCCCHHHHHHHcCCHHHH
Confidence            3456666666655555555        34677777777777777 77777777777777777765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.10  E-value=2.6e-11  Score=74.97  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=45.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++. |+++|.+ |..|.||||+|+.+|+.++|+
T Consensus        92 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-d~~g~tpL~~A~~~~~~~~v~  157 (222)
T 3ehr_A           92 CLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAAAWKGYADIVQ  157 (222)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567888877777666666        4678888888 8888888 888888888888888888763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.09  E-value=5.2e-11  Score=71.15  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +.+++|++.|+++|.. +..|.||||+|+.+|+.+++
T Consensus        61 ~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~   96 (169)
T 2y1l_E           61 EIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIV   96 (169)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHH
Confidence            3445555555555555 55555555555555554443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.09  E-value=4.6e-11  Score=71.05  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus        55 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~  119 (172)
T 3v30_A           55 LLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVE  119 (172)
T ss_dssp             HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5677888887766666555        78999999999999999 999999999999999999874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.09  E-value=4.8e-11  Score=70.70  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=15.6

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      .+++|++.|+++|.+ |..|.||||+|+.+|+.++
T Consensus        84 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~  117 (167)
T 3v31_A           84 IVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKC  117 (167)
T ss_dssp             HHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHCCCCCCcC-CCCCCCHHHHHHHcCCHHH
Confidence            444444444444444 4444444444444444443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.09  E-value=4e-11  Score=72.59  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=15.3

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      .+++|++.|+++|.+ +..|.||||+|+.+|+.++
T Consensus       116 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~  149 (192)
T 2rfm_A          116 MSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEI  149 (192)
T ss_dssp             HHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHH
Confidence            444444444444444 4444444444444444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.09  E-value=1.2e-11  Score=69.86  Aligned_cols=57  Identities=19%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus        28 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~A~~~~~~~~~~   92 (115)
T 2l6b_A           28 LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLAKKNGHHEIVK   92 (115)
T ss_dssp             HTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHHHHTTTCHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHCCCHHHHH
Confidence            4567777777666555554        46888999999999998 889999999999999888763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.09  E-value=5.8e-11  Score=70.93  Aligned_cols=55  Identities=20%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|.+++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.+++
T Consensus        67 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v  129 (169)
T 2y1l_E           67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIV  129 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence            344555554444444333        33555555666665555 55556666666655555554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.08  E-value=6.5e-11  Score=69.48  Aligned_cols=57  Identities=23%  Similarity=0.365  Sum_probs=49.6

Q ss_pred             hhhcCCChhhccchHHHHH-------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM-------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m-------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++       .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus        24 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~   87 (162)
T 1ihb_A           24 LLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFLDTLQ   87 (162)
T ss_dssp             HTTSCCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHhCCCCccccCccCccHHHHHHcCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678888888777776666       57899999999999999 999999999999999998864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.07  E-value=9.2e-11  Score=75.97  Aligned_cols=56  Identities=16%  Similarity=0.194  Sum_probs=43.7

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++|.+++.....+.+++        .+.++.|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus       106 l~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~~g~~~~v~  169 (269)
T 4b93_B          106 LKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACSGGHHELVA  169 (269)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCGGGHH
T ss_pred             HhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCCHHHHH
Confidence            455666555555444444        45889999999999999 999999999999999999874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.07  E-value=8.4e-11  Score=65.83  Aligned_cols=55  Identities=25%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|.+++.....+.+++        .+.+++|++.|++++.+ +..|.||||+|+.+|+.+++
T Consensus        55 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~  117 (126)
T 1n0r_A           55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV  117 (126)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCcHHHH
Confidence            344555544444433333        34556666666666665 66666666666666665554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.07  E-value=6.5e-11  Score=74.59  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++.....+.+++        .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus       143 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHCCCHHHHH
Confidence            4567888888777776666        46889999999999998 999999999999999988864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.07  E-value=7.3e-11  Score=66.09  Aligned_cols=57  Identities=26%  Similarity=0.374  Sum_probs=47.5

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.+ +..|.||||+|+..|+.++++
T Consensus        21 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~   85 (126)
T 1n0r_A           21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVK   85 (126)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcChHHHHH
Confidence            4567888877766666665        46889999999999999 999999999999999998864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.06  E-value=7.1e-11  Score=71.46  Aligned_cols=57  Identities=26%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++|++.|++++.+ |..|.||||+|+.+|+.++++
T Consensus       120 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCcHHHHH
Confidence            4677888888777766666        56899999999999999 999999999999999999874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.06  E-value=5.9e-11  Score=76.54  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=34.8

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++.|.+++.....+.+++        .+.+++|++ .|+++|.+ |..|.||||+|+.+|+.+++
T Consensus       202 Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~-d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          202 LLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLT-DRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCc-CCCCCCHHHHHHHcCCHHHH
Confidence            3455666666665555555        346666666 66666666 66666666666666666654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.06  E-value=5.5e-11  Score=78.50  Aligned_cols=57  Identities=16%  Similarity=0.130  Sum_probs=47.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++..|++++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus       212 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~iv~  276 (301)
T 2b0o_E          212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEE  276 (301)
T ss_dssp             HHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567888888777777776        46888999999999998 899999999999999888763

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.06  E-value=5.6e-11  Score=76.67  Aligned_cols=56  Identities=20%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.|.+++.....+.+++        .+.+++|++.|+|+|.+ |..|.||||+|+.+|+.++|+
T Consensus       170 l~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          170 FRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             HHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHH
Confidence            445555555444455555        56899999999999999 999999999999999998874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.06  E-value=6.7e-11  Score=71.34  Aligned_cols=57  Identities=19%  Similarity=0.337  Sum_probs=45.9

Q ss_pred             hhhcC-CChhhccchHHHHH-------------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQG-INPEDARTFEERSM-------------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qG-i~iea~r~~~~~~m-------------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++| .+++.....+.+++             .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus       125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~~~  195 (201)
T 3hra_A          125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-DNSGRTAMDYANQKGYTEISK  195 (201)
T ss_dssp             HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHcCCHhHHH
Confidence            34566 67766666555554             56889999999999999 999999999999999999874

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.06  E-value=4.1e-11  Score=83.23  Aligned_cols=58  Identities=26%  Similarity=0.302  Sum_probs=46.4

Q ss_pred             hhhhcCCChhhc------cchHHHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           2 QRFVQGINPEDA------RTFEERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         2 ~~~~qGi~iea~------r~~~~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .++++|.+++..      ...+.+++           ++.+++||++|+|+|.+ |..|.||||+||.+|+.++|+
T Consensus       150 ~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~-d~~g~TpLh~A~~~g~~~~v~  224 (497)
T 3lvq_E          150 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLK  224 (497)
T ss_dssp             HHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCC-CSSSCCHHHHHTTTTCHHHHH
T ss_pred             HHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHcCCHHHHH
Confidence            356788887755      33333333           45789999999999999 999999999999999999874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.05  E-value=7.5e-11  Score=69.83  Aligned_cols=57  Identities=19%  Similarity=0.278  Sum_probs=49.4

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++.....+.+++        .+.+++|++.|++++.. +..|.||||+|+.+|+.++++
T Consensus        88 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence            4567888888777776666        56899999999999999 999999999999999999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.05  E-value=7.6e-11  Score=77.61  Aligned_cols=52  Identities=17%  Similarity=0.030  Sum_probs=45.2

Q ss_pred             hhhcCCChhh-ccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           3 RFVQGINPED-ARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         3 ~~~qGi~iea-~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      +.+.|++++. ....+.+++        ++.+++|++.|+++|.+ |..|.||||+|+.+|+
T Consensus       116 l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~-d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVN  176 (327)
T ss_dssp             CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSH
T ss_pred             HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhcc
Confidence            4567889988 677777777        56899999999999999 9999999999999988

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.04  E-value=6.1e-11  Score=79.22  Aligned_cols=55  Identities=22%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|++++.....+.+++        ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++|
T Consensus       298 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~L~~A~~~g~~~iv  360 (437)
T 1n11_A          298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIV  360 (437)
T ss_dssp             HHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHCChHHHH
Confidence            345555555555444444        23556666666666666 66666666666666666554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.03  E-value=1.6e-10  Score=71.17  Aligned_cols=56  Identities=14%  Similarity=0.199  Sum_probs=45.8

Q ss_pred             hhhcCCChhhccc-------------hHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDART-------------FEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~-------------~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|.+++....             .+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus        94 Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~~~~~~~  170 (232)
T 2rfa_A           94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVLHILILQPNKTFA  170 (232)
T ss_dssp             HHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHTCSCHHHH
T ss_pred             HHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCChHHH
Confidence            4567777776543             344554        56899999999999999 99999999999999998875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.03  E-value=1.1e-10  Score=71.69  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=39.9

Q ss_pred             hhhcCCChhhcc-chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++... ..+.+++        .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus       135 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            355677666655 3344444        45778888888888887 788888888888888877653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.02  E-value=1.1e-10  Score=67.43  Aligned_cols=38  Identities=26%  Similarity=0.465  Sum_probs=35.2

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.++.|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus        23 ~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~   60 (137)
T 3c5r_A           23 IPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVE   60 (137)
T ss_dssp             HHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHH
Confidence            56899999999999999 999999999999999998864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.02  E-value=1.3e-10  Score=71.06  Aligned_cols=55  Identities=18%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcC-CCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSG-CLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~G-advn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|.+++.....+.+++        .+.+++|++.| +++|.+ |..|.||||+|+.+|+.+++
T Consensus       127 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~~~~~~v  190 (228)
T 2dzn_A          127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGHGDAA  190 (228)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCc-CCCCCCHHHHHHHcCCHHHH
Confidence            344555554444444443        34555666665 556655 56666666666666655554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.02  E-value=1.5e-10  Score=70.70  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=16.8

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+++|++.|+++|.+ +..|.||||+|+.+|+.+++
T Consensus       140 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v  174 (223)
T 2f8y_A          140 AAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETA  174 (223)
T ss_dssp             HHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCCCCCc-CCCCcCHHHHHHHcCCHHHH
Confidence            444444444444444 44444444444444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.01  E-value=1.8e-10  Score=70.74  Aligned_cols=56  Identities=18%  Similarity=0.325  Sum_probs=38.5

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|.+++.....+.+++        ++.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus       125 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v  188 (231)
T 3aji_A          125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEA  188 (231)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-CCCCCCHHHHHHHCCCHHHH
Confidence            3456666666555555544        45677777777777777 77777777777777777765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=98.99  E-value=2.2e-10  Score=69.98  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus       144 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~  208 (223)
T 2f8y_A          144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVR  208 (223)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc-cccCCCHHHHHHHhcchHHHH
Confidence            4677888888777766666        56899999999999999 999999999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=98.99  E-value=2.2e-10  Score=73.25  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=18.2

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++|
T Consensus        71 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv  107 (351)
T 3utm_A           71 VRIVQLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVT  107 (351)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHCCCHHHH
Confidence            34445555555555544 44555555555555544443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.99  E-value=2.1e-10  Score=71.29  Aligned_cols=55  Identities=15%  Similarity=0.064  Sum_probs=34.5

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      +++|++++.....+.+++        ++.++.|++ .|+++|.+ |..|.||||+|+.+|+.+++
T Consensus       206 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-~~~g~t~l~~A~~~~~~~i~  269 (285)
T 1wdy_A          206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIA  269 (285)
T ss_dssp             HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcccc-CCCCCcHHHHHHHcCcHHHH
Confidence            455666665555554444        346666666 67777766 66777777777777766665

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=98.99  E-value=2.7e-10  Score=68.41  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=44.9

Q ss_pred             CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           7 GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         7 Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +.+++.....+.+++        .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~   89 (179)
T 3f6q_A           29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASHGHRDIVQ   89 (179)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            556776666666665        56899999999999999 999999999999999998874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.99  E-value=1.6e-10  Score=72.68  Aligned_cols=56  Identities=18%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.. ..+.+.+        ++.++.|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus        24 ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~   87 (239)
T 1ycs_B           24 RIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVK   87 (239)
T ss_dssp             --------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            56677777643 3345554        56899999999999999 999999999999999999874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=98.99  E-value=1.6e-10  Score=76.22  Aligned_cols=57  Identities=28%  Similarity=0.310  Sum_probs=45.1

Q ss_pred             hhhcCCChhh------ccchHHHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPED------ARTFEERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea------~r~~~~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++..|.+++.      ....+.+++           ++.+++|+++|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus       170 ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v~  243 (301)
T 2b0o_E          170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLK  243 (301)
T ss_dssp             HHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567777776      233333333           46789999999999999 999999999999999999874

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.98  E-value=1.1e-10  Score=76.47  Aligned_cols=50  Identities=10%  Similarity=0.061  Sum_probs=36.8

Q ss_pred             hhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          10 PEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        10 iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.....+.+++        .+.+++|++.|+|+|.. |..|.||||+|+.+|+.++|+
T Consensus       204 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~g~~~~v~  261 (364)
T 3ljn_A          204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME-DNEHTVPLYLSVRAAMVLLTK  261 (364)
T ss_dssp             TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTCCHHHHH
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhChHHHHH
Confidence            665555555554        45788888888888887 888888888888888877763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=98.98  E-value=2.5e-11  Score=74.68  Aligned_cols=57  Identities=16%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.++.|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus       169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDILR  233 (241)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc-CCCCCCHHHHHHhcCcHHHHh
Confidence            5678999988887777776        56899999999999999 999999999999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=98.98  E-value=2.3e-10  Score=66.87  Aligned_cols=56  Identities=11%  Similarity=0.076  Sum_probs=48.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|++. ++++.. |..|.||||+|+.+|+.++++
T Consensus        87 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~-~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A           87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR-DARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC-CTTSCCHHHHHHHSCCHHHHH
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence            4678888888877777776        5689999999 999999 999999999999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.98  E-value=2.2e-10  Score=78.44  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             hhhcCCChhhcc--chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDAR--TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r--~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.+|++++...  ..+.+++        ++.+++|+++|+++|.. |..|.||||+|+.+|+.++|
T Consensus       219 LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A~~~g~~~~v  284 (368)
T 3jue_A          219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLA  284 (368)
T ss_dssp             HHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCcHHHH
Confidence            345555555544  3333333        34556666666666665 66666666666666665554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.97  E-value=2.2e-10  Score=72.55  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=42.5

Q ss_pred             hhhcCCChhhccch---HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTF---EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~---~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++..+..   +.+.+        ++.++.|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus         4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~   71 (229)
T 2vge_A            4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVD   71 (229)
T ss_dssp             ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            56778877655543   44554        56899999999999999 999999999999999999874

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=98.97  E-value=3.3e-10  Score=69.25  Aligned_cols=57  Identities=18%  Similarity=0.249  Sum_probs=44.4

Q ss_pred             hhhcC--CChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQG--INPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qG--i~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|  .+++.....+.+++        .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus        91 Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            34566  66666666555555        56888999999999998 899999999999999888764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=98.96  E-value=3.3e-10  Score=69.76  Aligned_cols=55  Identities=20%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.|.+++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.+++
T Consensus       131 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v  193 (237)
T 3b7b_A          131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCV  193 (237)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHH
T ss_pred             HHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhCCHhHH
Confidence            445555555544444443        34666666666666666 66666666666666666654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=98.96  E-value=3.5e-10  Score=70.84  Aligned_cols=54  Identities=11%  Similarity=0.073  Sum_probs=45.6

Q ss_pred             hhhcCCChhhccch-------------HHHHH--------HHHHHHHHH---cCCCCCCCCCCCCCcHHHHHHh--cCCc
Q psy9955           3 RFVQGINPEDARTF-------------EERSM--------LEDAKFWLS---SGCLGDVPNPKTGASALHVAAA--KGYI   56 (60)
Q Consensus         3 ~~~qGi~iea~r~~-------------~~~~m--------l~~~~~Ll~---~Gadvn~~~d~~G~TpLH~AA~--~G~~   56 (60)
                      ++++|++++.....             +.+++        .+.+++|++   .|+++|.+ |..|.||||+|+.  +|+.
T Consensus       109 Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~-d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT-DSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCH
T ss_pred             HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc-CCCCCCHHHHHHHcccCCc
Confidence            56778888877664             55665        568999999   99999999 9999999999998  7777


Q ss_pred             c
Q psy9955          57 K   57 (60)
Q Consensus        57 e   57 (60)
                      +
T Consensus       188 ~  188 (256)
T 2etb_A          188 E  188 (256)
T ss_dssp             H
T ss_pred             h
Confidence            6

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.96  E-value=3.4e-10  Score=75.46  Aligned_cols=56  Identities=21%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.|++++.....+.+++        .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus       153 l~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~  216 (373)
T 2fo1_E          153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMV  216 (373)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHH
Confidence            478999999888877777        56899999999999999 999999999999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=98.95  E-value=9.7e-11  Score=66.83  Aligned_cols=57  Identities=14%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++.....+.+++        .+.+++|++.|++++.. |..|.||||+|+..+..+++|
T Consensus        59 Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~ll~  123 (123)
T 3aaa_C           59 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQAIKALLQ  123 (123)
T ss_dssp             HHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCCHHHHHHHC
T ss_pred             HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHhCCHHHHHHhC
Confidence            5678999988888777776        56899999999999999 999999999998777777654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=98.95  E-value=2e-10  Score=71.81  Aligned_cols=57  Identities=12%  Similarity=0.055  Sum_probs=45.3

Q ss_pred             hhhcCCC---hhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGIN---PEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~---iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+   ++.....+.+++        ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus        28 Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~~~~~~v~   95 (282)
T 1oy3_D           28 LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHTALHLACRVRAHTCAC   95 (282)
T ss_dssp             HHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCCHHHHHTTTTCHHHHH
T ss_pred             HHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCcchhH
Confidence            3445555   566556666665        56899999999999999 999999999999999998864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=98.95  E-value=6.9e-11  Score=73.45  Aligned_cols=30  Identities=13%  Similarity=-0.113  Sum_probs=15.0

Q ss_pred             HHHHHHHcCCCCCCCCCCCCC-cHHHHHHhcC
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGA-SALHVAAAKG   54 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~-TpLH~AA~~G   54 (60)
                      .+++|+++|+|+|.+ |..|. ||||+|+.+|
T Consensus        96 iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~  126 (186)
T 3t8k_A           96 LCKIFLEKGADITAL-YKPYKIVVFKNIFNYF  126 (186)
T ss_dssp             HHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCC
T ss_pred             HHHHHHHCCCCCCcc-CCCcCchHHHHHHHcC
Confidence            344555555555555 55555 5555555433

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=98.95  E-value=5.8e-10  Score=63.19  Aligned_cols=38  Identities=26%  Similarity=0.476  Sum_probs=35.2

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.++.|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus        37 ~~~v~~Ll~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~   74 (110)
T 2zgd_A           37 DDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVK   74 (110)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence            56899999999999999 999999999999999998874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.94  E-value=2.8e-10  Score=73.52  Aligned_cols=55  Identities=22%  Similarity=0.164  Sum_probs=36.4

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++...  +.+++        ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++|+
T Consensus        50 Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~  112 (285)
T 3kea_A           50 LLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVK  112 (285)
T ss_dssp             HHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHcCCHHHHH
Confidence            445666666553  33333        34677777777777777 777777777777777777653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.94  E-value=4.8e-10  Score=69.62  Aligned_cols=53  Identities=15%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             CCChhhccchHHHHH------------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           7 GINPEDARTFEERSM------------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         7 Gi~iea~r~~~~~~m------------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      |.+++.....+.+++            .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus       172 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~  236 (285)
T 1wdy_A          172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHH
Confidence            788877766666655            56789999999999999 999999999999999998874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.93  E-value=4.5e-10  Score=76.90  Aligned_cols=57  Identities=16%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+|++++.....+.+++        .+.+++|+++|+++|.. |..|.||||+|+..|+.++++
T Consensus       254 LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~-d~~G~TpL~~A~~~g~~~iv~  318 (368)
T 3jue_A          254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIAMETANADIVT  318 (368)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCc-CCCCCCHHHHHHHCCCHHHHH
Confidence            5678999998888877777        46899999999999999 999999999999999999874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=98.93  E-value=5.7e-10  Score=67.22  Aligned_cols=52  Identities=17%  Similarity=0.205  Sum_probs=39.4

Q ss_pred             CChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           8 INPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         8 i~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+++.....+.+++        ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~   89 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQGRTEILA   89 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            36666666655555        45788888888888888 888888888888888887763

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=98.93  E-value=5e-10  Score=66.14  Aligned_cols=54  Identities=22%  Similarity=0.281  Sum_probs=42.7

Q ss_pred             cCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           6 QGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         6 qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+++++.....+.+++        ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus        31 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~   92 (165)
T 3twr_A           31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAE   92 (165)
T ss_dssp             TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHcCcHHHHH
Confidence            3444444444444444        57899999999999999 999999999999999999874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=98.93  E-value=4e-10  Score=69.37  Aligned_cols=57  Identities=18%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHH----HHHHHcCCCC------CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDA----KFWLSSGCLG------DVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~----~~Ll~~Gadv------n~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+    ++|++.|+++      |.+ |..|.||||+|+.+|+.++|+
T Consensus       140 Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~-~~~g~tpl~~A~~~g~~~~v~  214 (232)
T 2rfa_A          140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP-NNQGLTPFKLAGVEGNIVMFQ  214 (232)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678999988887777776        2344    9999999998      577 999999999999999999874

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=98.93  E-value=4.7e-10  Score=70.22  Aligned_cols=52  Identities=13%  Similarity=0.086  Sum_probs=43.8

Q ss_pred             hhhcCCChhhcc--------------chHHHHH--------HHHHHHHHH---cCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           3 RFVQGINPEDAR--------------TFEERSM--------LEDAKFWLS---SGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         3 ~~~qGi~iea~r--------------~~~~~~m--------l~~~~~Ll~---~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      ++++|++++...              ..+.+++        .+.+++|++   .|+++|.+ |..|.||||+|+..|+
T Consensus       112 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIAD  188 (260)
T ss_dssp             HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCC
T ss_pred             HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhcc
Confidence            467788888776              3455555        569999999   99999999 9999999999998877

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.93  E-value=8.5e-11  Score=72.91  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             HHHHHHHHHcCCCCCCCCCC-CCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPK-TGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~-~G~TpLH~AA~~G~~evv   59 (60)
                      .+.+++|++.|+++|.+ +. .|.||||+|+.+|+.++|
T Consensus       130 ~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~~~~~~~v  167 (236)
T 1ikn_D          130 LGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLV  167 (236)
T ss_dssp             HHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHH
Confidence            45566666666666666 44 666666666666666554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.93  E-value=2.3e-10  Score=75.00  Aligned_cols=57  Identities=21%  Similarity=0.187  Sum_probs=44.5

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCC-----CCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCL-----GDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gad-----vn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|.+++.....+.+++        .+.+++|++.|++     +|.. +..|.||||+||.+|+.++|+
T Consensus       159 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~  228 (364)
T 3ljn_A          159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAM  228 (364)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHH
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHH
Confidence            4566778777777666666        4578888888888     8888 888888888888888888764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=98.93  E-value=1e-10  Score=73.25  Aligned_cols=54  Identities=15%  Similarity=0.122  Sum_probs=45.8

Q ss_pred             cCCChhhccchHHHHH-----------------HHHHHHHHHcCCCC-------CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           6 QGINPEDARTFEERSM-----------------LEDAKFWLSSGCLG-------DVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         6 qGi~iea~r~~~~~~m-----------------l~~~~~Ll~~Gadv-------n~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .|++++.....+.+++                 .+.+++|++.|+++       |.+ |..|.||||+|+.+|+.++|+
T Consensus       165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~-d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALL-NNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcc-cCCCCCHHHHHHHcCCHHHHH
Confidence            7888887777665555                 36788999999999       668 999999999999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.93  E-value=4.8e-10  Score=70.95  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=44.4

Q ss_pred             hhhcCCChhhccc--------------hHHHHH--------HHHHHHHHH---cCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           3 RFVQGINPEDART--------------FEERSM--------LEDAKFWLS---SGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         3 ~~~qGi~iea~r~--------------~~~~~m--------l~~~~~Ll~---~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      ++++|.+++....              .+.+++        .+.+++|++   .|+++|.+ |..|.||||+|+..|+
T Consensus       120 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~-d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVAD  196 (273)
T ss_dssp             HHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCC
T ss_pred             HHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceee-CCCCCcHHHHHHHccC
Confidence            5677888888775              455665        568999999   99999999 9999999999999988

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.92  E-value=4.2e-10  Score=75.01  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             hhcC-CChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQG-INPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qG-i~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++| ++++.....+.++|        ++.+++|+++|+++|.. |..|.||||+|+.+|+.++|+
T Consensus       299 l~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~-d~~g~t~l~~A~~~g~~~iv~  363 (373)
T 2fo1_E          299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHNIVD  363 (373)
T ss_dssp             HHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CSSSCCHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            4444 88888777777776        56899999999999999 999999999999999999874

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=98.92  E-value=5.2e-10  Score=74.70  Aligned_cols=56  Identities=16%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|.+++.....+.+++        .+.+++|+++|+++|.. |..|.||||+|+.+||.+++
T Consensus       330 Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~l~~A~~~g~~~~~  393 (437)
T 1n11_A          330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVT  393 (437)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CSSSCCHHHHHHHTTCHHHH
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCcHHHH
Confidence            5678999998887777776        56999999999999999 99999999999999998875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=98.92  E-value=4.5e-10  Score=72.39  Aligned_cols=56  Identities=16%  Similarity=0.069  Sum_probs=40.6

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|.+++.....+.+++        .+.+++|++.|+++|.. +..|.||||+|+.+|+.+++
T Consensus        78 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v  141 (285)
T 3d9h_A           78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCV  141 (285)
T ss_dssp             HHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHH
Confidence            4566777776666665555        45777888888888877 77888888888888877765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=98.92  E-value=5.9e-10  Score=72.70  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++|+++|+++|.+ |..|.||||+||.+|+.++|+
T Consensus       185 ~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~g~~~~v~  222 (278)
T 1dcq_A          185 LHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLK  222 (278)
T ss_dssp             HHHHHHHHHHCSCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHCCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            45788999999999999 999999999999999999874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=98.92  E-value=6.1e-10  Score=68.32  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=17.8

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+++|++.|+++|.+ +..|.||||+|+.+|+.+++
T Consensus        88 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~  122 (231)
T 3aji_A           88 IVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIA  122 (231)
T ss_dssp             HHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence            445555555555554 55555555555555554443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=98.91  E-value=1.2e-10  Score=72.93  Aligned_cols=54  Identities=20%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             cCCChhhccchHHHHHH----------H-------HHHHHHHcCCCC-------CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           6 QGINPEDARTFEERSML----------E-------DAKFWLSSGCLG-------DVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         6 qGi~iea~r~~~~~~ml----------~-------~~~~Ll~~Gadv-------n~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .|++++.....+.+++.          +       .+++|++.|+++       |.+ |..|.||||+|+.+|+.++|+
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~-d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc-CCCCCCHHHHHHHhCCHHHHH
Confidence            78888887777666651          2       789999999999       888 999999999999999999874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.90  E-value=1.7e-10  Score=71.25  Aligned_cols=57  Identities=16%  Similarity=0.261  Sum_probs=49.7

Q ss_pred             hhhc-CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQ-GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~q-Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++ |++++.....+.+++        .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus       125 Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~l~  190 (222)
T 3ehr_A          125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMATNAACASLLK  190 (222)
T ss_dssp             HTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTSCCHHHHCCSHHHHHHHC
T ss_pred             HHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCHHHHhcchhHHHHHH
Confidence            4566 889988888877776        46899999999999999 999999999999999988875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.90  E-value=7.5e-10  Score=67.42  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=44.5

Q ss_pred             hhhcCCChhhccc-hHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDART-FEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~-~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +.+.|.+++.... .+.+++        .+.++.|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~  227 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMIN  227 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence            3456677776654 444444        56889999999999999 999999999999999998874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=98.89  E-value=8.3e-10  Score=67.97  Aligned_cols=56  Identities=29%  Similarity=0.439  Sum_probs=38.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|++++.....+.+++        ++.+++|++.|++++.. +..|.||||+|+.+|+.+++
T Consensus        30 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~   93 (237)
T 3b7b_A           30 LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVV   93 (237)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHH
Confidence            4556666666655555554        45677777777777777 77777777777777777665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=98.87  E-value=9.2e-10  Score=66.68  Aligned_cols=55  Identities=15%  Similarity=0.024  Sum_probs=46.0

Q ss_pred             hhhcCCChhhcc-chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955           3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus         3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      ++++|.+++... ..+.+++        .+.+++|++.|+++|.+ |..|.||||+|+..|+.+.
T Consensus        95 Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~  158 (183)
T 3deo_A           95 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTP  158 (183)
T ss_dssp             HHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHTCC
T ss_pred             HHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccCcc
Confidence            567899998877 6666666        56899999999999999 9999999999998765544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.86  E-value=4.4e-10  Score=72.59  Aligned_cols=57  Identities=11%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCC-CcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTG-ASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G-~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+++        ++.+++|++.|+++|.. +..| .||||+|+.+|+.++++
T Consensus        81 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~  146 (285)
T 3kea_A           81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVS  146 (285)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHH
Confidence            4677888888777776666        56899999999999998 8888 79999999999988764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.83  E-value=2e-09  Score=66.64  Aligned_cols=57  Identities=9%  Similarity=0.079  Sum_probs=42.5

Q ss_pred             hhhcCCChhhccc-hHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDART-FEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~-~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.... .+.+++        .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus       136 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~~~  201 (236)
T 1ikn_D          136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQ  201 (236)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cCCCCCHHHHHHccCchHHHH
Confidence            4566777777665 555555        45788888888888888 888888888888888887763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=98.81  E-value=2.2e-09  Score=69.11  Aligned_cols=54  Identities=19%  Similarity=0.099  Sum_probs=28.6

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.|.+++.....+.+++        .+.+++|++.|+++| . +..|.||||+|+.+|+.+++
T Consensus       177 l~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~-~~~g~t~L~~A~~~~~~~~v  238 (285)
T 3d9h_A          177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-Q-GKGQDSPLHAVVRTASEELA  238 (285)
T ss_dssp             HHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-C-CBTTBCHHHHHHHTTCHHHH
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-C-CCCCCCHHHHHHHcCCHHHH
Confidence            344555554444444444        345555556666555 2 55555666666665555554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=98.80  E-value=2.8e-09  Score=67.55  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus       212 ~~~v~~Ll~~g~d~~~~-d~~g~tpL~~A~~~~~~~~v~  249 (299)
T 1s70_B          212 TEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACR  249 (299)
T ss_dssp             HHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCCCc-CCCCCcHHHHHHhcCCHHHHH
Confidence            46899999999999999 999999999999999998874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.80  E-value=6.1e-10  Score=70.47  Aligned_cols=54  Identities=19%  Similarity=0.148  Sum_probs=44.9

Q ss_pred             cCCChhhccchHHHHH-----------------HHHHHHHHHcCCCCCC-------CCCCCCCcHHHHHHhcCCccccC
Q psy9955           6 QGINPEDARTFEERSM-----------------LEDAKFWLSSGCLGDV-------PNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         6 qGi~iea~r~~~~~~m-----------------l~~~~~Ll~~Gadvn~-------~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .|++++.....+.+++                 .+.+++|++.|+++|.       + |..|.||||+|+.+|+.++|+
T Consensus       173 ~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~-d~~g~TpL~~A~~~g~~~iv~  250 (273)
T 2pnn_A          173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT-NRKGLTPLALAASSGKIGVLA  250 (273)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccccc-CCCCCCHHHHHHHhChHHHHH
Confidence            7888887776655554                 3567789999999974       7 999999999999999999874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=98.79  E-value=1.3e-09  Score=69.17  Aligned_cols=50  Identities=16%  Similarity=0.084  Sum_probs=42.4

Q ss_pred             hhhcCCChhhcc-chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhc
Q psy9955           3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAK   53 (60)
Q Consensus         3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~   53 (60)
                      ++++|.+++... ..+.+++        .+.+++|+++|+++|.+ |..|.||||+|+..
T Consensus        96 Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~  154 (244)
T 3ui2_A           96 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREI  154 (244)
T ss_dssp             HHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             HHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHH
Confidence            567899998887 5566666        56899999999999999 99999999999854

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=98.77  E-value=1.7e-09  Score=60.76  Aligned_cols=38  Identities=34%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.++.|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus        22 ~~~~~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~~~   59 (115)
T 2l6b_A           22 AEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVK   59 (115)
T ss_dssp             HHHHHHHTTTTCCSSCC-CSSSCCTTHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence            56799999999999999 999999999999999998864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.71  E-value=6.6e-09  Score=63.18  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=17.7

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .++.|++.|++++.+ +..|.||||+|+.+|+.+++
T Consensus        91 ~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~  125 (240)
T 3eu9_A           91 MVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIV  125 (240)
T ss_dssp             HHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHH
Confidence            445555555555554 55555555555555554443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=98.63  E-value=1.3e-08  Score=66.83  Aligned_cols=40  Identities=13%  Similarity=0.159  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHcCCCCCC-CCCCCCCcHHHHHHhcCCccccC
Q psy9955          20 SMLEDAKFWLSSGCLGDV-PNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        20 ~ml~~~~~Ll~~Gadvn~-~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.+.+++|++.|+++|. . |..|.||||+||.+|+.++|+
T Consensus       108 ~~~~~~~~l~~~g~dvn~~~-d~~g~TpLh~Aa~~g~~~~v~  148 (327)
T 1sw6_A          108 LLQEVNDAFPNTQLNLNIPV-DEHGNTPLHWLTSIANLELVK  148 (327)
T ss_dssp             HHHHHHHHCTTSCCCSCSCC-STTCCCHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHhcCCCccccc-CCCCCcHHHHHHHcCCHHHHH
Confidence            345678899999999999 7 999999999999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.40  E-value=8.1e-09  Score=70.72  Aligned_cols=38  Identities=16%  Similarity=0.019  Sum_probs=33.0

Q ss_pred             HHHHHHHHHcCCCCCC--CCCCCCCcHHHHHH-hcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDV--PNPKTGASALHVAA-AKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~--~~d~~G~TpLH~AA-~~G~~evvk   60 (60)
                      ++.+++|+++|++++.  . |..|.||||+|| .+||.++||
T Consensus       176 ~eiv~~Ll~~ga~~~~~~~-d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          176 LHVLNRLCELAPTEATAMI-QAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             HHHHHHHHHSCGGGHHHHH-HHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHHHHHHHcCCccchhcc-CCCCCCHHHHHHHHCCCHHHHH
Confidence            4689999999999877  7 888999999999 999998874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.06  E-value=4e-07  Score=62.28  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=26.4

Q ss_pred             HHHHHHHHHcCCCC---CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLG---DVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadv---n~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++|++.|+|+   +.. +.+ .||||+||.+||.++||
T Consensus       141 ~eiv~~Ll~~gad~~~~~i~-~~~-~TpLh~Aa~~G~~eiv~  180 (376)
T 2aja_A          141 LHVLNRLCELAPTEIMAMIQ-AEN-YHAFRLAAENGHLHVLN  180 (376)
T ss_dssp             HHHHHHHHHSCTTTHHHHHS-HHH-HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCCCccccccC-CCC-CCHHHHHHHCCCHHHHH
Confidence            46788888888752   332 333 88888888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	60
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 32.9 bits (74), Expect = 0.001
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 4/47 (8%)

Query: 18  ERSMLEDAKFWLSSGCLGDVPN----PKTGASALHVAAAKGYIKVMK 60
           +  +L+D +F LS   +  +      P      L +A   G      
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (71), Expect = 0.002
 Identities = 6/39 (15%), Positives = 15/39 (38%)

Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
          ++  +  L  G   +    + G + LH A       +++
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 56

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.4 bits (69), Expect = 0.003
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 18  ERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
            R +L   +  + SG    + N     + L VA ++  I +++
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKN-CHNDTPLMVARSRRVIDILR 227

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (69), Expect = 0.004
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
          L   K  L  G   +V N     + LH+AA  G+ +V K
Sbjct: 13 LPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAK 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	60
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.35
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.32
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.32
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.3
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.28
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.24
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.21
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.18
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.14
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.12
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.07
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.03
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.03
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	98.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	98.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	98.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.89
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	98.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	98.89
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	98.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.8
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.79
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	98.77
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	98.74
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.71
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.7
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.57
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.56
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.37

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.8e-14  Score=81.14  Aligned_cols=58  Identities=21%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             hhhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           2 QRFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         2 ~~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .++++|+|++.....+.+++        .+.++.|++.|+++|.+ |..|+||||+|+.+|+.++||
T Consensus        19 ~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~   84 (130)
T d1ycsb1          19 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCK   84 (130)
T ss_dssp             HHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCCccccccccccccccccccccccccccccccccccccc-cccCcccccccchhhHHHHHH
Confidence            35788999998888888777        46899999999999999 999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.8e-13  Score=81.73  Aligned_cols=56  Identities=13%  Similarity=0.148  Sum_probs=47.7

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+.+++.....+.+++        .+.++.|+++|+|+|.+ |..|.||||+|+.+|+.+|||
T Consensus       143 ~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~-d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         143 LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREIT-DHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCCHHHHh
Confidence            456667777766666666        46899999999999999 999999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.3e-13  Score=87.33  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+++|++++.....+.+++        ++.+++|+++|||+|.+ |.+|.||||+|+.+||.++|+
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~-d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CSSSCCHHHHHHHTTCHHHHH
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567889988887777776        46899999999999999 999999999999999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.8e-13  Score=77.47  Aligned_cols=56  Identities=11%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ...|.+++.....+.++|        ++.+++|++.|+|+|.. |..|.||||+|+.+|+.||||
T Consensus        87 ~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~-d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccCCccccccccCchHHHhhhhcchhheeeeccccccCCccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            456777777766666665        56899999999999999 999999999999999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.9e-13  Score=81.61  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=48.1

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++|+++|+++|.+ |..|.||||+|+.+|+.++++
T Consensus        67 Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~i~~  131 (154)
T d1dcqa1          67 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEE  131 (154)
T ss_dssp             HHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCChhhhhhhhccccccccccccccccccccccCcccccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4667888888888777777        56889999999999998 999999999999999988763

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=1.8e-13  Score=78.44  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=49.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|+|++.....+.+++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus        21 Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~-d~~g~tpLh~A~~~~~~~~v~   85 (118)
T d1myoa_          21 YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVK   85 (118)
T ss_dssp             HHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCC-SSSCSCHHHHHHTTTCCHHHH
T ss_pred             HHHhhhccccccccccccccccccccccccccccccccceeeec-ccccccchhhhhhcCchhhhh
Confidence            5678999888887776666        34789999999999999 999999999999999999874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.2e-13  Score=76.63  Aligned_cols=57  Identities=19%  Similarity=0.208  Sum_probs=45.9

Q ss_pred             hhhcCCChhhccchHHH-HH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEER-SM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~-~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+.+ ++        .+.+++|++.|+++|.+ |..|.||||+|+.+|+.|++|
T Consensus        54 Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~G~T~l~~A~~~g~~~~v~  119 (125)
T d1bi7b_          54 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVDLAEELGHRDVAR  119 (125)
T ss_dssp             HHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCHHHHHHHcCCHHHHH
Confidence            46678888777665543 33        46899999999999999 999999999999999998874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.6e-14  Score=80.85  Aligned_cols=56  Identities=16%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++|.+++.....+.+++        .+.+++|+++|+|+|.+ |..|.||||+|+.+|+.|+||
T Consensus       164 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~-d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHhCCCccccC
Confidence            455666666555554544        56899999999999999 999999999999999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.9e-12  Score=77.98  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=45.2

Q ss_pred             hhhhcCCChhhc------cchHHHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           2 QRFVQGINPEDA------RTFEERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         2 ~~~~qGi~iea~------r~~~~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +.+..|+|+.+.      ...+++++           ++.+++|+++|+++|.+ |..|.||||+||.+|+.++||
T Consensus        24 ~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~-d~~g~TpLh~A~~~~~~~~v~   98 (154)
T d1dcqa1          24 QAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLK   98 (154)
T ss_dssp             HHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhh-hhhhccccccccccccccccc
Confidence            345667766544      33344444           35789999999999999 999999999999999999874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.21  E-value=3e-12  Score=78.53  Aligned_cols=55  Identities=15%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             hcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           5 VQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         5 ~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ..|.+++.....+++++        .+.+++|+++|+|+|.+ |..|.||||+|+.+|+.|+||
T Consensus       209 ~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~-d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         209 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CSSSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            45666666666555555        46899999999999999 999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.7e-12  Score=77.89  Aligned_cols=57  Identities=14%  Similarity=0.056  Sum_probs=48.2

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++||+ .|+++|.+ |..|.||||+|+.+|+.|+|+
T Consensus       205 Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~-d~~G~TpL~~A~~~~~~eiv~  270 (285)
T d1wdya_         205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            5678888887777777665        457889997 59999999 999999999999999999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-11  Score=72.50  Aligned_cols=56  Identities=11%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|++++.....+.+++        .+.+++|+ .|+++|.+ |..|.||||+|+.+|+.+++|
T Consensus        87 ~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_          87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR-DARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCC-CTTSCCHHHHHHHSCCHHHHH
T ss_pred             ccccccccccccCCCCeeecccccccccccccccc-cccccccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            4567788877766666665        35676555 78999998 999999999999999998874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.4e-12  Score=71.97  Aligned_cols=58  Identities=19%  Similarity=0.364  Sum_probs=47.9

Q ss_pred             hhhhcCCChhhccchHHHHH-------HHHHHHHHHcCCCCCCCCCCCC-CcHHHHHHhcCCccccC
Q psy9955           2 QRFVQGINPEDARTFEERSM-------LEDAKFWLSSGCLGDVPNPKTG-ASALHVAAAKGYIKVMK   60 (60)
Q Consensus         2 ~~~~qGi~iea~r~~~~~~m-------l~~~~~Ll~~Gadvn~~~d~~G-~TpLH~AA~~G~~evvk   60 (60)
                      .++++|+|++.....+.+++       .+.+++|+++|+++|.+ +..| .||||+||.+|+.++|+
T Consensus        21 ~Ll~~gad~n~~~~~g~t~l~~a~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~L~~A~~~g~~~~v~   86 (125)
T d1bi7b_          21 ALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLV   86 (125)
T ss_dssp             HHHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            35778898888777666655       57899999999999999 6665 57999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=9.9e-12  Score=71.98  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             hhccchHHHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          11 EDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        11 ea~r~~~~~~ml~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +|++...    ++.++.|+++|+|+|.+ |..|.||||+|+.+|+.++++
T Consensus         7 ~A~~~G~----~~~v~~Ll~~g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~   51 (130)
T d1ycsb1           7 DSSLEGE----FDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVK   51 (130)
T ss_dssp             HHHHHTC----HHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCC----HHHHHHHHHcCCCcccc-ccccccccccccccccccccc
Confidence            4444444    67899999999999999 999999999999999998864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1e-11  Score=76.06  Aligned_cols=56  Identities=21%  Similarity=0.212  Sum_probs=39.0

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +..+|++++.....+++++        .+.+++|++.|+|+|.+ |..|.||||+| .+|+.+|+|
T Consensus       155 L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~-d~~g~tpl~~A-~~~~~~i~~  218 (223)
T d1uoha_         155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQVA-KGGLGLILK  218 (223)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHC-CTTHHHHHH
T ss_pred             hccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHH-HCCCHHHHh
Confidence            3456677776666655555        45777888888888887 78888888876 467776653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.03  E-value=9.3e-12  Score=81.68  Aligned_cols=57  Identities=11%  Similarity=0.005  Sum_probs=45.9

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCC--CCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNP--KTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d--~~G~TpLH~AA~~G~~evvk   60 (60)
                      +...|.+++..+..+.+++        ++.|++|++.|+++|.. +  ..|.||||+||.+||.+|||
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~-~~~~~g~t~L~~Aa~~g~~~iv~  178 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA-MIQAENYHAFRLAAENGHLHVLN  178 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH-HHSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc-ccccCCCChhHHHHHHhhHHHHH
Confidence            4577889999888888887        57999999999999887 5  45899999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.03  E-value=5.9e-11  Score=73.55  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.|+.||++|+|+|.. |..|.||||+|+.+|+.++|+
T Consensus        53 ~~~v~~Ll~~Gadvn~~-d~~G~T~L~~A~~~g~~eiv~   90 (291)
T d1s70b_          53 TEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVK   90 (291)
T ss_dssp             HHHHHHHHHHCCCTTCB-CTTCCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHCCCCCCcc-CCCCCcHHHHHHhcCCceeee
Confidence            56899999999999999 999999999999999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.4e-11  Score=76.03  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++++|.+|+.....+.+++        .+.+++||++|+++|.+ +..|.||||+|+.+|+.+++
T Consensus        19 Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~-~~~g~t~L~~A~~~g~~~~~   82 (408)
T d1n11a_          19 LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMV   82 (408)
T ss_dssp             HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence            4667877777776666655        46788888888888888 88888888888888887764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=8.2e-11  Score=67.01  Aligned_cols=38  Identities=24%  Similarity=0.376  Sum_probs=35.2

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.++.|+++|+|+|.+ +..|.||||+|+.+|+.++++
T Consensus        15 ~~~v~~Ll~~g~d~n~~-~~~g~t~lh~A~~~~~~~~~~   52 (118)
T d1myoa_          15 LDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILE   52 (118)
T ss_dssp             HHHHHHHHTTTCCCCCC-SSSSCCTTHHHHHHSTTTHHH
T ss_pred             HHHHHHHHHhhhccccc-ccccccccccccccccccccc
Confidence            57899999999999999 999999999999999998763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-10  Score=66.10  Aligned_cols=56  Identities=13%  Similarity=0.057  Sum_probs=45.0

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCC-CCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGC-LGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Ga-dvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.|.+++..+..+.+.+        .+.++.|+++|+ +++.+ |..|.||||+|+.+|+.++||
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-d~~g~TpL~~A~~~~~~~iv~  150 (156)
T d1ihba_          86 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR-NHKGDTACDLARLYGRNEVVS  150 (156)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            456666666666655554        568899999997 78888 999999999999999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.95  E-value=2e-10  Score=70.14  Aligned_cols=54  Identities=20%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      ++.|+||++....+.+++        ++.+++|+++|+|+|.+ +..|.||||.|..+|+.++
T Consensus        61 l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~-~~~g~t~l~~a~~~~~~~~  122 (277)
T d2fo1e1          61 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGM  122 (277)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHH
T ss_pred             HHcCCCccccCCCCCeeeccccccccccccccccccccccccc-cccccccccchhhhcchhh
Confidence            456777777766666665        44677777777777777 7777777777777776554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-10  Score=69.98  Aligned_cols=39  Identities=15%  Similarity=0.195  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++|+++|+|+|.+.+..|.||||+|+.+|+.|+++
T Consensus        18 ~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~   56 (285)
T d1wdya_          18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE   56 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhh
Confidence            578999999999999986678999999999999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.5e-10  Score=69.71  Aligned_cols=57  Identities=21%  Similarity=0.343  Sum_probs=42.5

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +++.|++++.....+.+++        .+.+++|++.|.++|.+ |..|.||||+|+.+|+.++||
T Consensus       122 Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~-d~~g~TpL~~Aa~~g~~~~v~  186 (223)
T d1uoha_         122 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVEEAK  186 (223)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeec-cCCCCceeccccccCcHHHHH
Confidence            3466777776666555554        34677888888888888 888888888888888888764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.4e-10  Score=66.63  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=23.6

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      ++.++.|+++|+|+|.. |..|.||||+|+ .|+.|++
T Consensus        14 ~~~v~~Ll~~g~d~n~~-d~~g~TpL~~A~-~~~~ei~   49 (156)
T d1ihba_          14 LEQLTSLLQNNVNVNAQ-NGFGRTALQVMK-LGNPEIA   49 (156)
T ss_dssp             HHHHHHHTTSCCCTTCC-CTTSCCHHHHCC-SSCHHHH
T ss_pred             HHHHHHHHHCCCCcCcc-CCcccccccccc-ccccccc
Confidence            45667777777777776 677777777553 5666654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4e-10  Score=65.52  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=46.7

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++++|.+++.....+...+        .+.++.+++.|+++|.+ |..|.||||+|+..|+.++++
T Consensus        54 Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~-~~~~~t~L~~A~~~~~~~i~~  118 (156)
T d1bd8a_          54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVS  118 (156)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-cCCCCeeeccccccccccccc
Confidence            4567777777666554444        45889999999999999 999999999999999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=4.5e-10  Score=68.31  Aligned_cols=38  Identities=13%  Similarity=0.054  Sum_probs=34.7

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.++.|+++|+|+|.+ |..|.||||+|+.+|+.+++|
T Consensus       205 ~~~v~~Ll~~gadin~~-d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         205 ASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCCHHHHH
Confidence            46899999999999999 999999999999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6.3e-10  Score=64.22  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             HHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          25 AKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        25 ~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.+++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus        23 l~~~~~~g~~in~~-d~~g~TpL~~A~~~~~~~iv~   57 (228)
T d1k1aa_          23 VNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVR   57 (228)
T ss_dssp             HHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCCCCcc-CCCCCccceehhccccccccc
Confidence            44455799999999 999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=5.2e-10  Score=66.28  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=46.4

Q ss_pred             hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +...|.+++.....+.+.+        .+.++.|++.++++|.. |..|.||||+||.+|+.++||
T Consensus       109 L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~-d~~g~TpL~~A~~~g~~~~v~  173 (209)
T d1ot8a_         109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASK  173 (209)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             hhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccc-ccccccccchhccccHHHHHH
Confidence            3456777777766555444        34788899999999999 999999999999999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.88  E-value=5e-10  Score=69.27  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=30.3

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      .+.++.|++.|+|+|.+ +..|.||||+|+.+|+.++|+
T Consensus       212 ~~~~~~Ll~~g~din~~-~~~g~TpL~~A~~~g~~~iv~  249 (291)
T d1s70b_         212 TEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACR  249 (291)
T ss_dssp             HHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred             hhhhcccccceeccccc-ccCCCCHHHHHHHcCCHHHHH
Confidence            45678888888888887 888888888888888888764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2e-10  Score=69.58  Aligned_cols=56  Identities=9%  Similarity=0.108  Sum_probs=41.7

Q ss_pred             hhcCCChhhccch-HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTF-EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~-~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ...|.+++..+.. +.+++        .+.++.|++.|+|+|.+ |..|.||||+|+.+|+.++++
T Consensus       131 ~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~-~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         131 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHH
T ss_pred             cccCcccccccccCCCCccccccccccHHHHHHHHhcCCccccc-CCCCCCHHHHHHHCCCHHHHH
Confidence            3445555554432 34444        46889999999999999 999999999999999888763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=1.3e-09  Score=65.26  Aligned_cols=56  Identities=18%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             hhcCCChhhccchHHHHH--------HHHHHHHHHcC-CCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955           4 FVQGINPEDARTFEERSM--------LEDAKFWLSSG-CLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus         4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~G-advn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ...|.++......++++|        .+.++.|++.| .++|.+ |..|.||||+|+.+|+.++|+
T Consensus       125 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~-d~~g~TpLh~A~~~~~~~~v~  189 (229)
T d1ixva_         125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGHGDAAV  189 (229)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhhcccccccCCCCCCccchhhhccccccccccccccccccccc-ccccCCchhhhcccccHHHHH
Confidence            345555555555555554        35788999887 678998 999999999999999998874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=9.2e-10  Score=66.91  Aligned_cols=37  Identities=19%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus        58 ~~iv~~Ll~~ga~i~~~-d~~g~tpL~~A~~~~~~~~~   94 (255)
T d1oy3d_          58 ASTVEKLYAAGAGVLVA-ERGGHTALHLACRVRAHTCA   94 (255)
T ss_dssp             HHHHHHHHHTTCCSSCC-CTTSCCHHHHHTTTTCHHHH
T ss_pred             ccccccccccccccccc-ccccchhhhhhhccCchHHH
Confidence            56889999999999998 99999999999999988775

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.8e-09  Score=61.59  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM   59 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv   59 (60)
                      .+.+++||++|++++ . |..|.||||+|+.+++.+++
T Consensus        15 ~~~v~~LL~~ga~~~-~-~~~g~t~L~~a~~~~~~~~~   50 (153)
T d1awcb_          15 DDEVRILMANGAPFT-T-DWLGTSPLHLAAQYGHFSTT   50 (153)
T ss_dssp             HHHHHHHHHHTCCCC-C-CTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHcCCCcc-c-ccCCCccccccccccccccc
Confidence            578999999999987 5 89999999999999998865

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=3.5e-09  Score=67.35  Aligned_cols=48  Identities=19%  Similarity=0.097  Sum_probs=38.2

Q ss_pred             CCChhhc-cchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955           7 GINPEDA-RTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY   55 (60)
Q Consensus         7 Gi~iea~-r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~   55 (60)
                      +++++.. +..+.+++        ++.+++|++.|||+|.+ |..|.||||.|+..|+
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC-CcccccHHHHhhhccc
Confidence            5566643 45555554        56899999999999999 9999999999998765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.70  E-value=3.6e-10  Score=73.92  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      +.++.|++.|+++|.+ +..|.||||+||.+||.++||
T Consensus       107 ~~~~~L~~~~~~in~~-~~~g~taL~~Aa~~G~~~~v~  143 (346)
T d2ajaa1         107 DTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLN  143 (346)
T ss_dssp             HHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCCCccccc-CCCCCCHHHHHHHCCCHHHHH
Confidence            4456689999999999 999999999999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=1.2e-08  Score=61.01  Aligned_cols=38  Identities=13%  Similarity=0.017  Sum_probs=30.5

Q ss_pred             HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955          22 LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVMK   60 (60)
Q Consensus        22 l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evvk   60 (60)
                      ++.++.|++ .+.+++.+ |.+|.||||+|+.+|+.++||
T Consensus        13 ~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~   51 (229)
T d1ixva_          13 FFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITS   51 (229)
T ss_dssp             HHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCccccc
Confidence            456777776 46788888 899999999999999988764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=5.6e-09  Score=63.02  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=17.1

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955          24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV   58 (60)
Q Consensus        24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev   58 (60)
                      .+++|++.|+|++.. |..|.||||+|+.+|+.++
T Consensus        54 iv~~L~~~g~d~~~~-d~~g~t~l~~~~~~~~~~~   87 (221)
T d1iknd_          54 IAEALLGAGCDPELR-DFRGNTPLHLACEQGCLAS   87 (221)
T ss_dssp             HHHCCCSCCCCSCCC-CTTCCCHHHHHHHHTCHHH
T ss_pred             ccccccccccccccc-ccccccccccccccccccc
Confidence            444555555555554 5555555555555554443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=2.9e-08  Score=63.02  Aligned_cols=29  Identities=17%  Similarity=0.166  Sum_probs=21.2

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcHHHHHH
Q psy9955          22 LEDAKFWLSSGCLGDVPNPKTGASALHVAA   51 (60)
Q Consensus        22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA   51 (60)
                      .+.+++|++.|||+|.+ |..|.||||+|+
T Consensus       272 ~~iv~~Ll~~GAd~~~~-n~~G~Tpl~~A~  300 (301)
T d1sw6a_         272 ISIVDALLDYGADPFIA-NKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCGGGGTC
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCHHHHcC
Confidence            45777777777777777 777777777765