Psyllid ID: psy9980

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEEEcccccEEEEEEcccccccEEEcEEEccccccHHHHHHHHHHHHccEEEEEcEEEEEEEcccccccEEEEEEEEEEEEcccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccEEEEEEEEEEccccEEEEEEEcccccccEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
mtkwlpddsesripnyahTMIGAGAVVLNDKNQVLVVKEFYrkrpqwklpggyvemsEDIGEAAVREVFEetnirtefHSVVAFRhthkaafgcsdiYFIVRlkpltqeitkddreiteskwmd
Flexible Loop (DISEMBL)
mtkwlpddsesriPNYAHTMIGAGAVVLNDKNQVLVVKEFyrkrpqwklpggyVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRlkpltqeitkddreiteskwmd
Low Complexity Region (SEG)
MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD
Disordered region (IsUnstruct)
*************PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQ****************
Disordered Region (DISOPRED)
MTKWLP*DSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD
Disordered Region (DISEMBL)
MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDD**********
Disordered Region (DISPRO)
MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q8L7W2	369	Nudix hydrolase 8 OS=Arab	yes	N/A	0.991	0.333	0.460	1e-25
P13420	217	Nucleoside diphosphate-li	N/A	N/A	0.991	0.566	0.464	8e-25
P53370	316	Nucleoside diphosphate-li	yes	N/A	0.991	0.389	0.464	8e-24
Q94B74	278	Nudix hydrolase 2 OS=Arab	no	N/A	0.983	0.438	0.428	2e-23
P70563	313	Nucleoside diphosphate-li	yes	N/A	0.991	0.392	0.440	3e-23
Q8CH40	313	Nucleoside diphosphate-li	yes	N/A	0.991	0.392	0.417	1e-21
Q9SJC4	283	Nudix hydrolase 6 OS=Arab	no	N/A	0.983	0.431	0.460	5e-21
Q9SJC6	302	Nudix hydrolase 5 OS=Arab	no	N/A	0.983	0.403	0.417	9e-19
Q9SU14	282	Nudix hydrolase 7 OS=Arab	no	N/A	0.983	0.432	0.390	4e-18
Q6NPD7	277	Nudix hydrolase 10 OS=Ara	no	N/A	0.943	0.422	0.404	3e-17

>sp|Q8L7W2|NUDT8_ARATH Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 3/126 (2%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP---QWKLPGGYVEMS 57
           +T W+P++  S +P  A   +G G  VLN   +VLVV+E Y        WKLP G++  S
Sbjct: 171 LTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINES 230

Query: 58  EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
           E+I   AVREV EET + TEF  V+AFRH H  AF  SD++FI  L+PL+ +I  D  EI
Sbjct: 231 EEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALEI 290

Query: 118 TESKWM 123
             +KWM
Sbjct: 291 KAAKWM 296

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|P13420|NUDT6_XENLA Nucleoside diphosphate-linked moiety X motif 6 OS=Xenopus laevis GN=nudt6 PE=1 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 4/127 (3%)

Query: 1   MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
           +T WL  D  S++P YA   +G AGAV+  D  +VLVV++  +    WK PGG  +  ED
Sbjct: 26  LTLWL-KDGPSKLPGYATHQVGVAGAVLDEDNGKVLVVQDRNKTVNAWKFPGGLSDQGED 84

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
           IG  AVREV EET I +EF S+++ R  H H  AFG SD+Y I RLKPL+  I    +E 
Sbjct: 85  IGATAVREVLEETGIHSEFKSLLSIRQQHNHPGAFGKSDLYIICRLKPLSYTINFCHQEC 144

Query: 118 TESKWMD 124
            + +WMD
Sbjct: 145 LKCEWMD 151

May contribute to the regulation of cell proliferation.

Xenopus laevis (taxid: 8355)

>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 4/127 (3%)

Query: 1   MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
           +T WL  +  SR+P YA   +G AGAV      ++LVV++  + +  WK PGG  E  ED
Sbjct: 125 LTLWL-REGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEED 183

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
           IG+ AVREVFEET I++EF SV++ R  HT+  AFG SD+Y I RLKP +  I     E 
Sbjct: 184 IGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEEC 243

Query: 118 TESKWMD 124
              +WMD
Sbjct: 244 LRCEWMD 250

May contribute to the regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q94B74|NUDT2_ARATH Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 4/126 (3%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKE---FYRKRPQWKLPGGYVEMS 57
           +  W+P + ++   N +H  +G GA V+N   +VLVV+E    ++ +  WK P G V   
Sbjct: 94  LVYWIPKEDDTLPANASHR-VGIGAFVINHNKEVLVVQEKTGRFQGQGIWKFPTGVVNEG 152

Query: 58  EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
           EDI + +VREV EET + TEF  ++AFR THKA FG SD++F+  LKPL+ EI   + EI
Sbjct: 153 EDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCMLKPLSLEINAQESEI 212

Query: 118 TESKWM 123
             ++WM
Sbjct: 213 EAAQWM 218

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P70563|NUDT6_RAT Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=1 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 4/127 (3%)

Query: 1   MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
           +T WL  +  SR+P YA   +G AGAV      +VLVV++  + +  WK PGG  E  ED
Sbjct: 122 LTLWL-GEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRNKLKNMWKFPGGLSEPGED 180

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKA--AFGCSDIYFIVRLKPLTQEITKDDREI 117
           IG+ AVREVFEET +++EF S+++ R  H++  AFG SD+Y I RL+P +  I    +E 
Sbjct: 181 IGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLICRLQPRSFTINFCQQEC 240

Query: 118 TESKWMD 124
            + +WMD
Sbjct: 241 LKCEWMD 247

May contribute to the regulation of cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|Q8CH40|NUDT6_MOUSE Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 4/127 (3%)

Query: 1   MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
           +T WL  +  SR+P YA   +G AGAV      +VLVV++  + +  WK PGG  E  ED
Sbjct: 122 LTLWL-GEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRNKLKNMWKFPGGLSEPGED 180

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKA--AFGCSDIYFIVRLKPLTQEITKDDREI 117
           I + AVREVFEET +++EF S+++ R  H++  AFG SD+Y + RL+P +  I    +E 
Sbjct: 181 IADTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLVCRLQPRSFTINFCQQEC 240

Query: 118 TESKWMD 124
            + +W+D
Sbjct: 241 LKCEWID 247

May contribute to the regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|Q9SJC4|NUDT6_ARATH Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 6/128 (4%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKN-QVLVVKEF---YRKRPQWKLPGGYVEM 56
           +T W+ D   S +P  A   IG GA VLN K  +VLVV+E    ++    WKLP G V+ 
Sbjct: 85  LTSWIAD-VPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGVWKLPTGVVKE 143

Query: 57  SEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC-SDIYFIVRLKPLTQEITKDDR 115
            E+I E A+REV EET I+T+F  V+AFR +H+A     +DI+F+  L+P T EI K D 
Sbjct: 144 GENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLCELEPTTFEIKKQDS 203

Query: 116 EITESKWM 123
           EI  +KWM
Sbjct: 204 EILAAKWM 211

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC6|NUDT5_ARATH Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=3

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 5/127 (3%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKE---FYRKRPQWKLPGGYVEMS 57
           +T WLP+   S +P  A   IG GA VLN   ++LVV+E   +++ +  WK+P G ++  
Sbjct: 106 LTFWLPE-PPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYFKDKNVWKVPTGTIKEG 164

Query: 58  EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG-CSDIYFIVRLKPLTQEITKDDRE 116
           E I   AVREV EET+I  EF  V++F  +H+A +   +DI+F+  L+  T EI K D E
Sbjct: 165 ESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTDIFFVCELEARTFEIQKQDSE 224

Query: 117 ITESKWM 123
           I  +KWM
Sbjct: 225 IHAAKWM 231

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SU14|NUDT7_ARATH Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 6/128 (4%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLN-DKNQVLVVKE---FYRKRPQWKLPGGYVEM 56
           +  W+ +  ++ IP  A  ++GAGA+V+N +  +VLVV+E   F++ +  WKLP G +  
Sbjct: 85  LVSWISETPDT-IPANASHVVGAGALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINE 143

Query: 57  SEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF-GCSDIYFIVRLKPLTQEITKDDR 115
            EDI     REV EET I  +F  V+AFR +HKA     +D++F+  L P + +IT+   
Sbjct: 144 GEDIWTGVAREVEEETGIIADFVEVLAFRQSHKAILKKKTDMFFLCVLSPRSYDITEQKS 203

Query: 116 EITESKWM 123
           EI ++KWM
Sbjct: 204 EILQAKWM 211

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use both NADH and ADP-ribose as substrates, but not 8-oxo-dGTP, cyclic ADP-ribose, GDP-manose, UDP-glucose, ATP, or GTP. Exerts negative control of EDS1 signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q6NPD7|NUD10_ARATH Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 9/126 (7%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ---WKLPGGYVEMS 57
           +  W+P+ +ES IP  A   +  GAVVLN   +     E Y        WK+P G V+  
Sbjct: 94  LVYWIPE-AESTIPLNASHRVRVGAVVLNHNKE-----EKYGSLCGSGIWKIPTGVVDEG 147

Query: 58  EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
           E+I  AA+REV EET I TEF  ++AF  TH++ F  SD++F+  L+P + +I K D EI
Sbjct: 148 EEIFAAAIREVKEETGIDTEFLEILAFCQTHESFFAKSDLFFVCLLRPTSFDIQKQDLEI 207

Query: 118 TESKWM 123
             ++WM
Sbjct: 208 EAAQWM 213

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
91088925	267	PREDICTED: similar to CG8128 CG8128-PA [	1.0	0.464	0.612	3e-38
157111039	188	hypothetical protein AaeL_AAEL005715 [Ae	1.0	0.659	0.584	2e-36
320169050	482	NUDIX domain-containing protein [Capsasp	0.991	0.255	0.544	2e-35
158284650	271	Anopheles gambiae str. PEST AGAP012857-P	1.0	0.457	0.56	2e-35
118777116	286	Anopheles gambiae str. PEST AGAP012590-P	1.0	0.433	0.56	2e-35
321474642	269	hypothetical protein DAPPUDRAFT_313893 [	0.991	0.457	0.549	3e-35
194894394	326	GG17898 [Drosophila erecta] gi|190649706	0.991	0.377	0.540	3e-34
357607452	293	hypothetical protein KGM_17541 [Danaus p	1.0	0.423	0.524	2e-33
195566936	326	GD17228 [Drosophila simulans] gi|1942044	0.991	0.377	0.524	2e-33
195456770	338	GK17180 [Drosophila willistoni] gi|19417	0.991	0.363	0.524	2e-33

>gi|91088925|ref|XP_973309.1| PREDICTED: similar to CG8128 CG8128-PA [Tribolium castaneum] gi|270012358|gb|EFA08806.1| hypothetical protein TcasGA2_TC006500 [Tribolium castaneum]

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 92/124 (74%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
           M  WLP D    IP YAHTMIG GAVV+NDK+++LVV E Y + P WKLPGGYVE  E++
Sbjct: 80  MYLWLPVDELCNIPPYAHTMIGVGAVVVNDKSEILVVSEKYYQVPHWKLPGGYVEPGENL 139

Query: 61  GEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITES 120
            +AA+REV+EET ++TEFHSV+  RHTH   FGCSDIY +V LKPLT  I K +REI + 
Sbjct: 140 VDAAIREVWEETGVQTEFHSVLTLRHTHFGMFGCSDIYTVVSLKPLTFNIEKCEREIAKC 199

Query: 121 KWMD 124
            WMD
Sbjct: 200 TWMD 203

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111039|ref|XP_001651364.1| hypothetical protein AaeL_AAEL005715 [Aedes aegypti] gi|108878555|gb|EAT42780.1| AAEL005715-PA [Aedes aegypti]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 90/125 (72%), Gaps = 1/125 (0%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSED 59
           M +WLP D    IP YAHTM+G GA+VLND NQ+LVV E     +  WKLPGGYVE  E+
Sbjct: 2   MYRWLPSDETPNIPPYAHTMVGVGALVLNDTNQILVVSEKNALIKGSWKLPGGYVEPGEN 61

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
             EAA+REV EETNI+T+F SVV+ RH H A FGCSD+Y ++ L P  +EI K DREI++
Sbjct: 62  FVEAAIREVQEETNIKTKFESVVSLRHAHGAGFGCSDLYIVMALAPENREIVKCDREISK 121

Query: 120 SKWMD 124
            +WMD
Sbjct: 122 CEWMD 126

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320169050|gb|EFW45949.1| NUDIX domain-containing protein [Capsaspora owczarzaki ATCC 30864]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 88/123 (71%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
           MT+WLP+D  S++P YA   +G G  VLND+N++LVV E Y  +P WKLPGG+    ED+
Sbjct: 85  MTRWLPEDEPSQLPTYATHYVGVGGFVLNDQNELLVVSERYGDKPMWKLPGGHANRGEDL 144

Query: 61  GEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITES 120
           G+AA+REVFEET I +EF S+ AFRH HK  F  SD+YF+ RLK L+ EI  D REI+  
Sbjct: 145 GQAAIREVFEETGIESEFISLTAFRHQHKYLFETSDLYFVCRLKALSLEIKHDPREISAC 204

Query: 121 KWM 123
           +W+
Sbjct: 205 RWL 207

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|158284650|ref|XP_307652.4| Anopheles gambiae str. PEST AGAP012857-PA [Anopheles gambiae str. PEST] gi|157020945|gb|EAA03450.5| AGAP012857-PA [Anopheles gambiae str. PEST]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 92/125 (73%), Gaps = 1/125 (0%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSED 59
           + +WLP D  + IP Y+HTM+G GA+V+N++ QVLVV E Y      WKLPGGYVE +E+
Sbjct: 106 LYRWLPTDESANIPPYSHTMVGVGALVMNERQQVLVVSENYALIAGSWKLPGGYVEPNEN 165

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
             +AA+REV EETNIRT F SVV+ RH H A FGCSD+Y ++ L PLT+ I+K +REI +
Sbjct: 166 FIDAAIREVEEETNIRTRFDSVVSIRHAHGAGFGCSDLYIVMALTPLTEAISKCNREIAK 225

Query: 120 SKWMD 124
            +WMD
Sbjct: 226 CEWMD 230

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118777116|ref|XP_307498.3| Anopheles gambiae str. PEST AGAP012590-PA [Anopheles gambiae str. PEST] gi|116133047|gb|EAA03301.4| AGAP012590-PA [Anopheles gambiae str. PEST]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 92/125 (73%), Gaps = 1/125 (0%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSED 59
           + +WLP D  + IP Y+HTM+G GA+V+N++ QVLVV E Y      WKLPGGYVE +E+
Sbjct: 89  LYRWLPTDESANIPPYSHTMVGVGALVMNERQQVLVVSENYALIAGSWKLPGGYVEPNEN 148

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
             +AA+REV EETNIRT F SVV+ RH H A FGCSD+Y ++ L PLT+ I+K +REI +
Sbjct: 149 FIDAAIREVEEETNIRTRFDSVVSIRHAHGAGFGCSDLYIVMALTPLTEAISKCNREIAK 208

Query: 120 SKWMD 124
            +WMD
Sbjct: 209 CEWMD 213

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321474642|gb|EFX85607.1| hypothetical protein DAPPUDRAFT_313893 [Daphnia pulex]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 93/131 (70%), Gaps = 8/131 (6%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
           + KWLP D   ++P+YAHTM+GAGA+V+NDKN++LVV+E Y KRP WKLPGGYV+  E I
Sbjct: 79  LLKWLPSDEPCQVPSYAHTMVGAGAMVVNDKNEILVVQERYYKRPHWKLPGGYVDPGESI 138

Query: 61  GEAAVREVFEETNIRTEFHSVVAFRHTH------KAAFGCSDIYFIVRLKPL--TQEITK 112
             A  REVFEET I+TEF S+VA RH         A FGCSDIYF+  L+P+  + EI  
Sbjct: 139 ATAVKREVFEETGIKTEFVSLVAVRHLQSREKNPSARFGCSDIYFVTYLRPVEGSTEIKM 198

Query: 113 DDREITESKWM 123
             RE++++ WM
Sbjct: 199 CPRELSDACWM 209

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894394|ref|XP_001978057.1| GG17898 [Drosophila erecta] gi|190649706|gb|EDV46984.1| GG17898 [Drosophila erecta]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSED 59
           M +WLPD+  S +P YAHT++G G +V+ND+N+VLVV + Y   P  WKLPGGYVE  E+
Sbjct: 142 MYRWLPDNESSNLPTYAHTLMGVGGLVINDQNEVLVVSDRYAMIPNSWKLPGGYVEPREN 201

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
           + +AA+REV EET IRTEF SVV  RH H   FGCSD+Y ++ LKPL     + +REI  
Sbjct: 202 LIDAAIREVAEETGIRTEFRSVVTLRHAHGGTFGCSDMYVVIALKPLNLNFKRCEREIER 261

Query: 120 SKWM 123
            +WM
Sbjct: 262 LQWM 265

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357607452|gb|EHJ65494.1| hypothetical protein KGM_17541 [Danaus plexippus]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 84/124 (67%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
           M KWLP D +  +P   HT +G GA+VLND++Q+L V E     P WKLPGGYVE  EDI
Sbjct: 112 MYKWLPADIQPNLPPACHTNLGVGALVLNDRDQLLAVSEKNYNYPHWKLPGGYVERGEDI 171

Query: 61  GEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITES 120
             AA REVFEET +++EF S++ FRHTH   +G SDIY ++ +K L+Q+I    RE+   
Sbjct: 172 THAAKREVFEETGVKSEFESLITFRHTHNMMYGNSDIYMLLMMKALSQDIILSQREVNAC 231

Query: 121 KWMD 124
           KWMD
Sbjct: 232 KWMD 235

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195566936|ref|XP_002107031.1| GD17228 [Drosophila simulans] gi|194204428|gb|EDX18004.1| GD17228 [Drosophila simulans]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSED 59
           M +WLP+   S +P YAHT++G G +V+N++++VLVV + Y   P  WKLPGGYVE  E+
Sbjct: 142 MYRWLPEHESSNLPTYAHTLMGVGGLVINEQDEVLVVSDRYAMIPNSWKLPGGYVEPREN 201

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
           + +AA+REV EET IRTEF SVV+ RH H   FGCSD+Y ++ LKPL  + T+ +REI  
Sbjct: 202 LIDAAIREVAEETGIRTEFRSVVSLRHAHGGTFGCSDMYVVIALKPLNLDFTRCEREIAR 261

Query: 120 SKWM 123
            +WM
Sbjct: 262 IQWM 265

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195456770|ref|XP_002075280.1| GK17180 [Drosophila willistoni] gi|194171365|gb|EDW86266.1| GK17180 [Drosophila willistoni]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSED 59
           M +WLP D ES +PNYAHT++G G +V+ND++++LVV + +   P  WKLPGGYVE  E+
Sbjct: 154 MYRWLPTDEESNLPNYAHTLLGVGGLVINDQDEILVVSDRFAMIPNSWKLPGGYVEPREN 213

Query: 60  IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
           + +AA+REV EET I+TEF SVV  RH H   FGCSDIY ++ LKP   +  + +REI +
Sbjct: 214 LVDAAIREVEEETGIKTEFRSVVCLRHAHGGNFGCSDIYVVIGLKPNNLDFKRCEREIAK 273

Query: 120 SKWM 123
            +WM
Sbjct: 274 LQWM 277

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
FB|FBgn0030668	330	CG8128 [Drosophila melanogaste	0.991	0.372	0.516	4.1e-33
DICTYBASE|DDB_G0281219	376	DDB_G0281219 "Nucleoside dipho	0.967	0.319	0.504	3.4e-29
TAIR|locus:2171544	369	NUDT8 "nudix hydrolase homolog	0.983	0.330	0.464	5.9e-25
UNIPROTKB|A7YY29	257	NUDT6 "NUDT6 protein" [Bos tau	0.991	0.478	0.464	2.6e-24
UNIPROTKB|P53370	316	NUDT6 "Nucleoside diphosphate-	0.991	0.389	0.464	1.1e-23
TAIR|locus:2168993	278	NUDT2 "nudix hydrolase homolog	0.959	0.428	0.439	2.9e-23
UNIPROTKB|E2RC30	316	NUDT6 "Uncharacterized protein	0.991	0.389	0.448	1.3e-22
UNIPROTKB|F1RQN4	314	NUDT6 "Uncharacterized protein	0.991	0.391	0.456	1.3e-22
RGD|621356	313	Nudt6 "nudix (nucleoside dipho	0.991	0.392	0.440	1.3e-22
UNIPROTKB|F1NLN3	297	F1NLN3 "Uncharacterized protei	0.991	0.414	0.440	2.6e-22

FB|FBgn0030668 CG8128 [Drosophila melanogaster (taxid:7227)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 64/124 (51%), Positives = 89/124 (71%)

Query:     1 MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSED 59
             M +WLP+   S +P YAHT++G G +V+N++++VLVV + +   P  WKLPGGYVE  E+
Sbjct:   142 MYRWLPEHESSNLPTYAHTLMGVGGLVINEQDEVLVVSDRFAMIPNSWKLPGGYVEPREN 201

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
             + +AA+REV EET IRTEF SVV+ RH H   FGCSD+Y ++ LKPL  + T+ +REI  
Sbjct:   202 LIDAAIREVAEETGIRTEFRSVVSLRHAHGGTFGCSDMYVVIALKPLNLDFTRCEREIAR 261

Query:   120 SKWM 123
              +WM
Sbjct:   262 IQWM 265

GO:0016787 "hydrolase activity" evidence=IEA

DICTYBASE|DDB_G0281219 DDB_G0281219 "Nucleoside diphosphate-linked moiety X motif 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 62/123 (50%), Positives = 83/123 (67%)

Query:     1 MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSED 59
             +TKWLP    +++P+Y    IG G VV+ND+N++L++ E  ++RP +WK+PGG  +  ED
Sbjct:   193 LTKWLPIGEPNKLPHYTSHFIGCGGVVINDRNEILLITE--KQRPDKWKIPGGANDPGED 250

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITE 119
             I E AVREV+EET IRTEF S++  R  H  AF   DIYFI  LKPL+ EI  D  EI +
Sbjct:   251 ICETAVREVWEETGIRTEFVSILGLRQLHNYAFNRGDIYFICALKPLSSEINSDPSEIAQ 310

Query:   120 SKW 122
              KW
Sbjct:   311 CKW 313

GO:0016787 "hydrolase activity" evidence=IEA

TAIR|locus:2171544 NUDT8 "nudix hydrolase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 59/127 (46%), Positives = 78/127 (61%)

Query:     1 MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ----WKLPGGYVEM 56
             +T W+P++  S +P  A   +G G  VLN   +VLVV+E Y   P     WKLP G++  
Sbjct:   171 LTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCA-PSITGLWKLPTGFINE 229

Query:    57 SEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDRE 116
             SE+I   AVREV EET + TEF  V+AFRH H  AF  SD++FI  L+PL+ +I  D  E
Sbjct:   230 SEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALE 289

Query:   117 ITESKWM 123
             I  +KWM
Sbjct:   290 IKAAKWM 296

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|A7YY29 NUDT6 "NUDT6 protein" [Bos taurus (taxid:9913)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 59/127 (46%), Positives = 81/127 (63%)

Query:     1 MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
             ++ WL  D  SR+P YA   +G AGAV   +  ++LVV++  + +  WK PGG  E  ED
Sbjct:    66 LSLWL-GDGPSRLPGYATHQVGVAGAVFDENTRKILVVQDRNKLKNMWKFPGGLSEPGED 124

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
             IG+ AVREVFEET I++EF S+++ R  HTH  AFG SD+Y I RLKP +  I    RE 
Sbjct:   125 IGDTAVREVFEETGIKSEFRSLLSIRQQHTHPGAFGKSDMYIICRLKPYSFTINFCQREC 184

Query:   118 TESKWMD 124
              + +WM+
Sbjct:   185 LKCEWMN 191

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|P53370 NUDT6 "Nucleoside diphosphate-linked moiety X motif 6" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 59/127 (46%), Positives = 78/127 (61%)

Query:     1 MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
             +T WL +   SR+P YA   +G AGAV      ++LVV++  + +  WK PGG  E  ED
Sbjct:   125 LTLWLRE-GPSRLPGYASHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEED 183

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
             IG+ AVREVFEET I++EF SV++ R  HT+  AFG SD+Y I RLKP +  I     E 
Sbjct:   184 IGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEEC 243

Query:   118 TESKWMD 124
                +WMD
Sbjct:   244 LRCEWMD 250

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008083 "growth factor activity" evidence=TAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2168993 NUDT2 "nudix hydrolase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/123 (43%), Positives = 78/123 (63%)

Query:     4 WLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEF---YRKRPQWKLPGGYVEMSEDI 60
             W+P + ++   N +H  +G GA V+N   +VLVV+E    ++ +  WK P G V   EDI
Sbjct:    97 WIPKEDDTLPANASHR-VGIGAFVINHNKEVLVVQEKTGRFQGQGIWKFPTGVVNEGEDI 155

Query:    61 GEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITES 120
              + +VREV EET + TEF  ++AFR THKA FG SD++F+  LKPL+ EI   + EI  +
Sbjct:   156 HDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCMLKPLSLEINAQESEIEAA 215

Query:   121 KWM 123
             +WM
Sbjct:   216 QWM 218

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

UNIPROTKB|E2RC30 NUDT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 57/127 (44%), Positives = 78/127 (61%)

Query:     1 MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
             +T WL  +  SR+P YA   +G AGAV   +  ++LVV++  + +  WK PGG  E  ED
Sbjct:   125 LTLWL-GEGPSRLPGYATHQLGVAGAVFDENTRKILVVQDRNKLKNMWKFPGGLSEPGED 183

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFRHTHKA--AFGCSDIYFIVRLKPLTQEITKDDREI 117
             IG+ AVREVFEET I++EF S+++ R  H +  AFG SD+Y I RLKP +  I     E 
Sbjct:   184 IGDTAVREVFEETGIKSEFKSLLSIRQQHASPGAFGKSDMYIICRLKPYSFTINFCQHEC 243

Query:   118 TESKWMD 124
                +WMD
Sbjct:   244 LRCEWMD 250

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RQN4 NUDT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 58/127 (45%), Positives = 78/127 (61%)

Query:     1 MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
             +T WL     SR+P YA   +G AGAV   +  ++LVV++  + +  WK PGG  E  ED
Sbjct:   123 LTLWL-GKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGED 181

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
             IG+ AVREVFEET I++EF S+++ R  HT+  AFG SD+Y I RLKP +  I     E 
Sbjct:   182 IGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFIINFCQHEC 241

Query:   118 TESKWMD 124
                +WMD
Sbjct:   242 LRCEWMD 248

GO:0016787 "hydrolase activity" evidence=IEA

RGD|621356 Nudt6 "nudix (nucleoside diphosphate linked moiety X)-type motif 6" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 56/127 (44%), Positives = 80/127 (62%)

Query:     1 MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
             +T WL  +  SR+P YA   +G AGAV      +VLVV++  + +  WK PGG  E  ED
Sbjct:   122 LTLWL-GEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRNKLKNMWKFPGGLSEPGED 180

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFRHTHKA--AFGCSDIYFIVRLKPLTQEITKDDREI 117
             IG+ AVREVFEET +++EF S+++ R  H++  AFG SD+Y I RL+P +  I    +E 
Sbjct:   181 IGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLICRLQPRSFTINFCQQEC 240

Query:   118 TESKWMD 124
              + +WMD
Sbjct:   241 LKCEWMD 247

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1NLN3 F1NLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 56/127 (44%), Positives = 79/127 (62%)

Query:     1 MTKWLPDDSESRIPNYAHTMIG-AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
             +T+WL  +  SR+P +A   +G AGAV+  +  +VLVV++  +    WK PGG     ED
Sbjct:   109 LTRWL-GEGPSRLPAFASHQLGVAGAVLDENSGKVLVVQDRNKTVNGWKFPGGLSNPGED 167

Query:    60 IGEAAVREVFEETNIRTEFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
             IG+ AVREVFEET I++EF S+++ R  H H  AFG SD+Y I RL+P +  I    +E 
Sbjct:   168 IGDTAVREVFEETGIKSEFKSILSIRQQHKHPGAFGKSDMYIICRLQPSSFTINFCQQEC 227

Query:   118 TESKWMD 124
                +WMD
Sbjct:   228 LRCEWMD 234

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4FP40	RPPH_PELUB	3, ., 6, ., 1, ., -	0.3135	0.8306	0.6518	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	2e-57
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	4e-22
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-20
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	3e-18
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	2e-14
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	3e-13
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	3e-13
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	1e-12
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	7e-12
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	2e-11
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	1e-10
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	2e-10
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	2e-10
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	6e-10
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	2e-09
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	3e-09
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	3e-08
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	5e-08
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	6e-08
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	7e-08
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	7e-08
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	8e-08
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	1e-07
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	2e-07
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	3e-07
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	5e-07
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	1e-06
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	1e-06
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	2e-06
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	2e-06
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	2e-06
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	3e-06
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	3e-06
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	4e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	5e-06
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	7e-06
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	8e-06
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	3e-05
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	5e-05
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	6e-05
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	8e-05
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	8e-05
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	1e-04
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	1e-04
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	1e-04
cd04688	126	cd04688, Nudix_Hydrolase_29, Members of the Nudix	3e-04
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	3e-04
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	0.001

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  174 bits (442), Expect = 2e-57
 Identities = 63/107 (58%), Positives = 75/107 (70%), Gaps = 1/107 (0%)

Query: 18  HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
           HT +G G +VLN+KN+VLVV+E  +    WKLPGG V+  EDI + AVREV EET I TE
Sbjct: 1   HT-VGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTE 59

Query: 78  FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           F SVV FRH H  AFG SD+YFI RLKPL+ +I  D  EI  +KWM 
Sbjct: 60  FVSVVGFRHAHPGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMP 106

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 84.1 bits (208), Expect = 4e-22
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 21  IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
           +  GAV+L++  +VL+V+        W+LPGG VE  E + EAA+REV EET +  +   
Sbjct: 1   VAVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLR 60

Query: 81  VVAFRHTHKAAFGCSDIYFIVRLKPLTQEITK-DDREITESKWMD 124
           ++          G   + F+   + +  E T     EI+E +W+ 
Sbjct: 61  LLGVYEVESPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVT 105

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 79.8 bits (197), Expect = 2e-20
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 19  TMIGAGAVVLNDKNQVLVVKEFYRKRPQ--WKLPGGYVEMSEDIGEAAVREVFEETNIR- 75
                G V+LN+  +VL+V+          W+LPGG VE  E   EAAVRE+ EET +R 
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRV 60

Query: 76  --TEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                  V+ +    +   G     F+  L     E   ++ E++E +W+ 
Sbjct: 61  LLLLLLGVLEYPAPGR-DGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVP 110

Length = 133

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 73.9 bits (182), Expect = 3e-18
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 21  IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR--TEF 78
           +GA AVV +   +VL+V+  Y   P W LPGG +E  E   EAA RE+ EE  IR     
Sbjct: 1   LGARAVVTDADGRVLLVRHTYG--PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVA 58

Query: 79  HSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
             +  + H+     G  D   + R +  TQ + +   EI+E+++  
Sbjct: 59  ELLGVYYHSA---SGSWDHVIVFRARADTQPVIRPSHEISEARFFP 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 64.6 bits (158), Expect = 2e-14
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 20  MIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIRT-- 76
           ++GAG ++LN++ +VL+ K   R     W LPGG +E+ E + E A RE+ EET +    
Sbjct: 7   LVGAGVILLNEQGEVLLQK---RSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEE 63

Query: 77  -EFHSVVAFRHTHKA-----AFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            E   V + +  +             +Y++ ++     ++  D  E  E K+  
Sbjct: 64  LELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVF--GGKLVPDGDETLELKFFS 115

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 61.1 bits (149), Expect = 3e-13
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
          +  GAVV     +VL+V+   R  P     W  PGG VE+ E + +AA+RE+ EET +  
Sbjct: 1  VAVGAVVFRG-GRVLLVR---RANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEA 56

Query: 77 E 77
          E
Sbjct: 57 E 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 14  PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVREVF 69
             Y   ++  GA+++ +  ++L+V+   R        W LPGG+VE+ E + EAA RE+ 
Sbjct: 4   MGYRTPLVAVGALIVRN-GRILLVR---RANEPGAGYWALPGGFVEIGETLEEAARRELK 59

Query: 70  EETNIRTEFHSVVAFRHTHK-AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           EET +R     ++A          G    +     +P  + +  D  +  E  W  
Sbjct: 60  EETGLRVRVLELLAVFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFP 115

Length = 145

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 21 IGAGAVVLNDKNQVLVVKEFYRK----RPQWKLPGGYVEMSEDIGEAAVREVFEETNIR- 75
          +G G  VLN K +VL+ K   RK       W LPGG++E  E   E A REV EET +  
Sbjct: 3  VGVGVFVLNPKGKVLLGK---RKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHI 59

Query: 76 --TEFHSVV 82
             +F +V 
Sbjct: 60 ENVQFLTVT 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.6 bits (140), Expect = 7e-12
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
           +   A +  D  ++L+V+E  +    W LPGG+ ++     E  V+EV EET +  +  
Sbjct: 2  KVDVRAAIFKD-GKILLVRE--KSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR 58

Query: 80 SVVAFRHTHK 89
           + A    +K
Sbjct: 59 KLAAVDDRNK 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 23 AGAVVLNDKNQVLVVKEFY-RKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
          AGAV+LN++N VL+V+E    K+  W +P G VE  E   +AAVRE  EET +R      
Sbjct: 16 AGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLR------ 69

Query: 82 VAFRHTHKAAFGCSD 96
          V          G  D
Sbjct: 70 VRPVKFLGTYLGRFD 84

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 20 MIGAGAVVLN---DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
          ++ AG VV        +VL++     +   W LP G +E  E   EAAVREV EET IR 
Sbjct: 1  VLAAGGVVFRGSDGGIEVLLIH--RPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRA 58

Query: 77 E 77
          E
Sbjct: 59 E 59

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 13/109 (11%)

Query: 24  GAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVREVFEETNIR-TEF 78
           G ++LN+  ++LVV+   R R        LPGG+V+  E   EA +RE+ EET ++ TE 
Sbjct: 5   GVLILNEDGELLVVR---RAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTEL 61

Query: 79  HSVVAFRHTHKAA---FGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
             + +  +T+      +   D++F+ ++         DD  + E KW+ 
Sbjct: 62  SYLFSLPNTYPYGGMEYDTLDLFFVCQVDDKPIVKAPDD--VAELKWVV 108

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
          G  AVV +D+ +VL+++        W LPGG VE  E   + AVREV EET +  E   +
Sbjct: 4  GVTAVVRDDEGRVLLIRR--SDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGL 61

Query: 82 V 82
          V
Sbjct: 62 V 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 23 AGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
            AV+LN++ +VL+++E  R  R +W LP G +E  E I EA  REV EET +  E
Sbjct: 3  VAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCE 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 25  AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84
           A V+    + L+V+E       +  P G++E  E + EAAVRE  EET    E  +++  
Sbjct: 4   AAVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGI 63

Query: 85  RHTHKAAFGCSDIYFIVRLKPLTQEITKD-DREITESKWM 123
                     + + F    + L     +  D  I  + W+
Sbjct: 64  YQWTAPDSDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWL 103

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 24  GAVVLNDKNQVLVVKEFYRKRP---QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
            A+++ D  ++L++K    +R    +W+LPGG VE  E   EA  REV+EET +      
Sbjct: 5   AALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFL 64

Query: 81  VVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                 TH    G  ++ ++V +        K   E  E  W+ 
Sbjct: 65  RYPSTVTH-EDSGVYNVIYLVFVCEALSGAVKLSDEHEEYAWVT 107

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 23 AGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
          A A V+N D+ +VL+    +RK   W  PGG+++  E + EAA+RE+ EET I       
Sbjct: 5  ASAFVVNPDRGKVLLTH--HRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP 62

Query: 82 VAFR 85
          ++  
Sbjct: 63 LSVL 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 34 VLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
          +++ +     R +  LPGG++E+ E   +A  RE+ EET +
Sbjct: 18 LVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGV 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 47.9 bits (113), Expect = 6e-08
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 12/114 (10%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI-GEAAVREVFEETNIR------ 75
              +V  D    +++ +       W+LPGG VE  E++  EAA RE+ EET +R      
Sbjct: 14  VAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERL 73

Query: 76  TEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDD-----REITESKWMD 124
                         +  G     F V     +  +  +       E+ + +W+ 
Sbjct: 74  ELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVP 127

Length = 161

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 47.5 bits (114), Expect = 7e-08
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)

Query: 22 GAGAVVLNDKNQVLVVKEFYRKRP-----QWKLPGGYVEMSEDIGEAAVREVFEET 72
              +  +D  +V++V+++   RP       +LP G ++  ED  EAA RE+ EET
Sbjct: 4  AVAVLPYDDDGKVVLVRQY---RPPVGGWLLELPAGLIDPGEDPEEAARRELEEET 56

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 47.2 bits (113), Expect = 7e-08
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 23  AGAVV---LNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
           AGA++   LN++ + L+++  Y     W  P G+VE  ED  EAA+RE  EET I  E  
Sbjct: 5   AGAIIYRRLNNEIEYLLLQASYG---HWDFPKGHVEPGEDDLEAALRETEEETGITAEQL 61

Query: 80  SVVA-FRHTHKAAFGCSD---IYFIVRLKPLTQEITKDDREITESKWMD 124
            +V  F+ T             YF+  L+P  +    +  E  + +W+ 
Sbjct: 62  FIVLGFKETLNYQVRGKLKTVTYFLAELRPDVEVKLSE--EHQDYRWLP 108

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 47.1 bits (113), Expect = 8e-08
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 12/62 (19%)

Query: 23 AGAVVLNDKNQVLVVKEFYRKRP-------QWKLPGGYVEMSEDIGEAAVREVFEETNIR 75
            A++++D  ++L+ +     RP        W+ PGG VE  E   +A VRE+ EE  I 
Sbjct: 4  VAAIIIDDDGRILIAQ-----RPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIE 58

Query: 76 TE 77
           E
Sbjct: 59 VE 60

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 23/57 (40%), Positives = 29/57 (50%)

Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
           GA AV+  D   +L+ K       +W LPGG +E  E   EA  REV EET +  E
Sbjct: 1  FGAYAVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVE 57

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 19/121 (15%)

Query: 22  GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE---- 77
             G V+ N+  +V V +        W+ P G ++  ED  +AA+RE+ EET +  +    
Sbjct: 5   NVGVVLFNEDGKVFVGRR-IDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI 63

Query: 78  -----------FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEI---TKDDREITESKWM 123
                          +  +       G    +F+ R      EI     +  E  E +W+
Sbjct: 64  IAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWV 123

Query: 124 D 124
            
Sbjct: 124 P 124

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 26 VVLNDKNQVLVVKEFYRKRPQWK----LPGGYVEMSEDIGEAAVREVFEETNI 74
            + D ++VL+     RK+         PGG VE  E   E A+RE+ EET +
Sbjct: 6  CFIKDPDKVLL---LNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGL 55

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.8 bits (106), Expect = 5e-07
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQ---WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          +G GA +L D  ++L+VK    + P+   W +PGG V+  E + +A VRE+ EET +   
Sbjct: 3  VGCGAAILRDDGKLLLVKR--LRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIH 60

Query: 78 FHSVVA 83
             ++ 
Sbjct: 61 STRLLC 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 23 AGAVVLNDKN---QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR 75
          AGA+   +     +VL+V    R+  +W +P G  E  E   EAA RE +EE  +R
Sbjct: 3  AGAIPYRETGGEVEVLLVTS--RRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVR 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 16  YAHTMIGAGAVVLNDKNQVLVVKEFYRKRP---QWKLPGGYVEMSEDIGEAAVREVFEET 72
           Y  T +   AVV+     VL+V+   R  P    W LPGG++E  E + +A +RE+ EET
Sbjct: 199 YPPTFVTVDAVVVQS-GHVLLVRR--RAEPGKGLWALPGGFLEQDETLLDACLRELREET 255

Query: 73  NI 74
            +
Sbjct: 256 GL 257

Length = 340

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 22/110 (20%)

Query: 27  VLNDKNQVLVVKEFYRKRPQWKL---------PGGYVEMSEDIGEAAVREVFEETNIRTE 77
           + N K ++L+     +KR   K           GG+V+  E    AA REV EE  +  +
Sbjct: 7   IFNSKGELLL-----QKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELD 60

Query: 78  FHSVVAFRHTHKAAFGCSDIYFI---VRLKPLTQEITKDDREITESKWMD 124
           F  +         A G  D Y     V +  L   + K+  E+ E K++ 
Sbjct: 61  FSELRPLFRYFFEAEGFDDYYLFYADVEIGKLI--LQKE--EVDEVKFVS 106

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKR--PQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
           A A++L    +VL+V    RKR    + LPGG +E  E   +A +RE+ EE  +  +  S
Sbjct: 3   AAALILVRDGRVLLV----RKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDS 58

Query: 81  VVAFRHTHKAAFGCSDIYFIVRLK----PLTQEITKDDREITESKWMD 124
           +         A         VR       LT E      EI E +W+D
Sbjct: 59  LEYLGTFRAPAANEPG--VDVRATVYVAELTGEPVPAA-EIEEIRWVD 103

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV 82
           A  V++ND+ ++L+++     +  +  PGG +E  E   EAA RE  EE  +      + 
Sbjct: 3   ASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIF 62

Query: 83  A---FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                    +  F    I   + L    +   + D       W+D
Sbjct: 63  LIVNQNGRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVD 107

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 24 GAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEET 72
          GA++     ++L+V+   + R  W +PGG VE  E + EA  RE  EET
Sbjct: 6  GALIYAPDGRILLVRT-TKWRGLWGVPGGKVEWGETLEEALKREFREET 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 52  GYVEMSEDIGEAAVREVFEETNIRTE---FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQ 108
           G+VE  E + +A  REVFEE  I+ +   +     +   H    G    Y        + 
Sbjct: 175 GFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHSLMLGFMAEY-------DSG 227

Query: 109 EITKDDREITESKW 122
           EIT D+ E+ +++W
Sbjct: 228 EITPDEGELEDARW 241

Length = 279

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          I  G V   +  +VL+ +     R   W LP G++E  E   + A+RE +EE   R E
Sbjct: 14 IIVGCVPEWE-GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVE 70

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 22  GAGAVVLNDKNQVLVVK-EFYRKRP---QWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
           G    +L    ++L+   +     P    W LPGG+ E  E   E  +RE+ EE  +   
Sbjct: 2   GVALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLP 61

Query: 78  FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
              +  FR    A+   ++  F+V L      I   D E    + M 
Sbjct: 62  ESRIPWFRVYPSASPPGTEHVFVVPLTAREDAILFGD-EGQALRLMT 107

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.6 bits (98), Expect = 7e-06
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 47 WKLPGGYVEMSEDIGEAAVREVFEETNIR 75
          W+ PGG+VE  E I EAA REV+EET   
Sbjct: 23 WEFPGGHVEPGETIEEAARREVWEETGAE 51

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 24 GAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEET 72
          GA++LN D ++VL+VK +  K   W  P G +   ED  + A+REV+EET
Sbjct: 5  GAIILNEDLDKVLLVKGWKSKS--WSFPKGKINKDEDDHDCAIREVYEET 52

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 24 GAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          G ++LN + QV   +    +   W+ P G ++  E   +A  RE++EE  +R E
Sbjct: 12 GIILLNRQGQVFWGRR-IGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPE 64

Length = 156

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRPQ---WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
           A  V+L+  ++VL+++      P    W  PGG VE  E   +AA RE+ EET I     
Sbjct: 3   ARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADL 62

Query: 80  SVVAFRHTHKAAFGCSDI-----YFIVR---LKPLTQEITKDDR-EITESKWMD 124
               +R      F   D      +F+ R    +P     T  +R  I   +W  
Sbjct: 63  GPPVWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWT 116

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 15/74 (20%)

Query: 33 QVLVVKEFYRKRPQ-------------WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
           VLVV        +             W+   G +E  E   EAA REV EET +     
Sbjct: 3  SVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDP--E 60

Query: 80 SVVAFRHTHKAAFG 93
           +         AF 
Sbjct: 61 RLTLLDRGASIAFV 74

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 46  QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS----DIYFIV 101
           QW LP G++E  ED   AAVRE  EE  +  +    +   HT             ++F V
Sbjct: 27  QWALPAGHLEKGEDAVTAAVREAREEIGVTLD-PEDLRLAHTMHRRTEDIESRIGLFFTV 85

Query: 102 R 102
           R
Sbjct: 86  R 86

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
          +VL+V+   +   +W LPGG +E  E   +AA RE+ EET +
Sbjct: 12 RVLLVR---KSGSRWALPGGKIEPGETPLQAARRELQEETGL 50

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 25 AVVLNDKNQ-VLVVK--EFYRKRPQ-WKLPGGYVEMSEDIGEAAVREVFEETNIR 75
          AV+L   +Q +L+ +     R  P  W  PGG+VE+ E++ EA +RE+ EET + 
Sbjct: 5  AVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLT 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 13/80 (16%)

Query: 25 AVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSEDIGEAAVREVFEET---NIR--TEF 78
          A++L     +L+    Y KR   +K PGG VE  ED  E  +RE+ EET   NIR   +F
Sbjct: 5  AIILQGDKILLL----YTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKF 60

Query: 79 HSVVAFRHTHKAAFGCSDIY 98
           +    R   K     +DI+
Sbjct: 61 GTYTERRPWRK---PDADIF 77

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 26  VVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR 85
           +V++  +++L+ ++       + L  G+VE  E + EA  REV EE  IR +    + + 
Sbjct: 6   LVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVK---NIRYV 62

Query: 86  HTHKAAFGCS-DIYFIVRLKPLTQEITKDDREITESKWMD 124
            +    F  S  + F       + EI  DD E+ +++W  
Sbjct: 63  GSQPWPFPSSLMLGFTAEAD--SGEIVVDDDELEDARWFS 100

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|240044 cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 11/59 (18%)

Query: 23 AGAVVLNDKNQVLVVK----EFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          A A+++++  ++LV K     FYR       PGG +E  E   EA +RE  EE  ++ E
Sbjct: 4  AAAIIIHN-GKLLVQKNPDETFYR------PPGGGIEFGESSEEALIREFKEELGLKIE 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 29  NDKNQVLVVKEFYRKRPQWKL----------PGGYVEMSEDIGEAAVREVFEETN-IRTE 77
            + N VLV+  +   + QW L          PGG VE  E   EAA+REV EET  I  E
Sbjct: 22  PNPNHVLVIPRY---KDQWLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKE 78

Query: 78  FHSVVAFRHTHKAAFGCSDIYFI 100
            H +  +    ++     D+YF 
Sbjct: 79  LHYIGQYEVEGESTDFVKDVYFA 101

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 12/60 (20%)

Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-------WKLPGGYVEMSEDIGEAAVREVFEETNIR 75
          A  V+ +   ++L+ +     RP+       W+ PGG VE  E + +A  RE+ EE  I 
Sbjct: 8  AAGVIRDADGRILLAR-----RPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIE 62

Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.93
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.92
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.92
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.92
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.91
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.9
PLN02325	144	nudix hydrolase	99.9
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.9
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.89
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.89
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.89
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.89
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.89
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.88
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.88
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.88
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.88
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.88
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.88
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.88
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.87
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.87
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.87
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.87
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.87
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.87
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.87
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.87
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.87
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.87
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.87
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.87
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.87
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.87
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.86
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.86
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.86
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.86
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.86
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.86
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.86
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.86
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.86
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.86
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.86
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.85
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.85
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.84
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.84
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.83
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.83
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.83
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.83
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.82
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.82
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.82
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.82
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.81
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.81
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.8
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.8
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.8
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.8
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.79
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.79
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.78
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.78
PRK10707	190	putative NUDIX hydrolase; Provisional	99.78
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.78
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.75
PLN02709	222	nudix hydrolase	99.72
KOG3084|consensus	345		99.72
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.7
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.7
PRK08999	312	hypothetical protein; Provisional	99.7
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.68
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.67
PLN02791	770	Nudix hydrolase homolog	99.65
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.65
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.65
KOG0648|consensus	295		99.58
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.56
PLN03143	291	nudix hydrolase; Provisional	99.55
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.54
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	99.49
KOG2839|consensus	145		99.49
KOG3069|consensus	246		99.29
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.26
KOG3041|consensus	225		99.22
PLN02839	372	nudix hydrolase	98.92
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.83
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.69
COG4112	203	Predicted phosphoesterase (MutT family) [General f	98.22
KOG4195|consensus	275		98.18
KOG0142|consensus	225		98.06
KOG2937|consensus	348		97.6
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.46
PRK10880	350	adenine DNA glycosylase; Provisional	96.95
KOG4313|consensus	306		96.9
KOG4432|consensus	405		96.71
KOG1689|consensus	221		96.51
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	96.18
KOG4548|consensus	263		96.07
KOG4432|consensus	405		95.34
PRK13910	289	DNA glycosylase MutY; Provisional	94.94
PF14443	126	DBC1: DBC1	93.82
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	92.77
PF03487	43	IL13: Interleukin-13; InterPro: IPR020470 Interleu	88.7
KOG2937|consensus	348		81.53

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.93  E-value=9.4e-25  Score=133.45  Aligned_cols=106  Identities=23%  Similarity=0.375  Sum_probs=79.7

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      ++++++++++++++++||++|... .++.|.+|||++++||++++||+||++||||+++....++..............+
T Consensus         1 ~~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04679           1 PRVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWV   80 (125)
T ss_pred             CceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEE
Confidence            467899999998889999999643 6799999999999999999999999999999999877777765443322233334


Q ss_pred             EEEEEeccCCccCC-CCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEIT-KDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~-~~~~e~~~~~W~~  124 (124)
                      .++|.+....+... ..++|+.+++|++
T Consensus        81 ~~~f~~~~~~~~~~~~~~~E~~~~~W~~  108 (125)
T cd04679          81 APVYLAENFSGEPRLMEPDKLLELGWFA  108 (125)
T ss_pred             EEEEEEeecCCccccCCCccccEEEEeC
Confidence            44454444333332 3456889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.92  E-value=3.9e-24  Score=133.77  Aligned_cols=108  Identities=20%  Similarity=0.307  Sum_probs=79.7

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEeecccC---
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRHTHKA---   90 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~~~~~---   90 (124)
                      ..+.+++.++|++.+|++||+||+.. .+|.|.+|||+++.|||+++||+||++||||+++...  +++........   
T Consensus         9 ~~p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~   88 (144)
T cd03430           9 NTPLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF   88 (144)
T ss_pred             CCCeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence            45577899999998889999999654 6899999999999999999999999999999998765  66555432211   


Q ss_pred             ---CcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          91 ---AFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        91 ---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                         ....+.+.++|.+....+.....++|+.+++|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  125 (144)
T cd03430          89 FGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLT  125 (144)
T ss_pred             ccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEec
Confidence               1111234444444444444445678899999985

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.92  E-value=4.1e-24  Score=135.21  Aligned_cols=109  Identities=18%  Similarity=0.290  Sum_probs=80.0

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc--cceeEEEeecccC-C
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE--FHSVVAFRHTHKA-A   91 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~~~~-~   91 (124)
                      ...+.+++.++|.++++++||.||+++ .+|.|+||||++++|||+++||+||++||||+.+.  ...++.+...... .
T Consensus        13 ~~~~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~   92 (159)
T PRK15434         13 RSTPLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDN   92 (159)
T ss_pred             cCCceEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccc
Confidence            345567899999988789999999755 67999999999999999999999999999999874  3355554322211 1


Q ss_pred             ---c--CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          92 ---F--GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        92 ---~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                         .  ..+.+.++|.+....+.+...++|+.+++|++
T Consensus        93 ~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~  130 (159)
T PRK15434         93 FSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLT  130 (159)
T ss_pred             cCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEe
Confidence               1  12334455555555555555667899999985

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.92  E-value=1e-23  Score=129.16  Aligned_cols=105  Identities=58%  Similarity=0.929  Sum_probs=77.9

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF   99 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   99 (124)
                      .++++++++++++++||++|+..+++.|.+|||++++|||+++||.||++||||+++....++..............+++
T Consensus         2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (127)
T cd04670           2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYF   81 (127)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEE
Confidence            46788899998789999988644679999999999999999999999999999999876666655433333333334544


Q ss_pred             EEEeccCCccCCCCcccccceeecC
Q psy9980         100 IVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ++.+......+...++|+.+++|++
T Consensus        82 ~~~~~~~~~~~~~~~~E~~~~~w~~  106 (127)
T cd04670          82 ICRLKPLSFDINFDTSEIAAAKWMP  106 (127)
T ss_pred             EEEEccCcCcCCCChhhhheeEEEc
Confidence            5544333333445677888999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.91  E-value=2.4e-23  Score=127.84  Aligned_cols=106  Identities=28%  Similarity=0.407  Sum_probs=78.2

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      +++++.++++++++++||++|..+ .++.|.+|||++++|||+++||.||++||||+++.....+............+.+
T Consensus         1 p~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04678           1 PRVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYV   80 (129)
T ss_pred             CceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEE
Confidence            467899999998889999999654 6899999999999999999999999999999998876666554333222233334


Q ss_pred             EEEEEeccCCccCCC---CcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITK---DDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~---~~~e~~~~~W~~  124 (124)
                      .++|.+.........   .++|+.+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  110 (129)
T cd04678          81 TIFVKAEVDDGEAEPNKMEPEKCEGWEWFD  110 (129)
T ss_pred             EEEEEEEeCCCCcccCCCCCceeCceEEeC
Confidence            444444443332222   456788899985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.90  E-value=1.6e-22  Score=126.18  Aligned_cols=110  Identities=31%  Similarity=0.363  Sum_probs=77.9

Q ss_pred             CCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc
Q psy9980          14 PNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF   92 (124)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~   92 (124)
                      ...+....++++++++.++++||++|+.. .++.|++|||++++||++++||+||++||||+++....++...... ...
T Consensus         7 ~~~~~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~~~   85 (142)
T cd04700           7 HHVEVEARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGR-FDD   85 (142)
T ss_pred             cCcceeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEE-cCC
Confidence            34567778999999997789999988654 6799999999999999999999999999999998866655543211 112


Q ss_pred             CcccEEEEEEeccCCccCC-CCcccccceeecC
Q psy9980          93 GCSDIYFIVRLKPLTQEIT-KDDREITESKWMD  124 (124)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~  124 (124)
                      ....+.++|.+........ ...+|+.++.|++
T Consensus        86 ~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~  118 (142)
T cd04700          86 GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFS  118 (142)
T ss_pred             CcEEEEEEEEEEecCCccccCCCCCEEEEEEEC
Confidence            2222333444433222211 2347889999986

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PLN02325 nudix hydrolase

Probab=99.90  E-value=1.9e-22  Score=126.07  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=77.5

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--c
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA--F   92 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~   92 (124)
                      ++.+++++.++++++ +++||+||+.. ..|.|.+|||+++.|||+++||+||++||||+++....++.+.......  .
T Consensus         5 ~~~p~~~v~~vi~~~-~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~~   83 (144)
T PLN02325          5 EPIPRVAVVVFLLKG-NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEPK   83 (144)
T ss_pred             CCCCeEEEEEEEEcC-CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCCC
Confidence            456788888888887 69999999654 5789999999999999999999999999999999888777765432211  1


Q ss_pred             CcccEEEEEEeccCCcc---CCCCcccccceeecC
Q psy9980          93 GCSDIYFIVRLKPLTQE---ITKDDREITESKWMD  124 (124)
Q Consensus        93 ~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~W~~  124 (124)
                      ..+.+.++|.+......   ....++++.+++|++
T Consensus        84 ~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~  118 (144)
T PLN02325         84 PSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYE  118 (144)
T ss_pred             CcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEC
Confidence            12223333333322221   123455678899985

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.90  E-value=1e-22  Score=127.24  Aligned_cols=108  Identities=26%  Similarity=0.476  Sum_probs=80.7

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      +..+.+++.+++..+ +++||+||+.. ..|.|++|||+++.|||+++||+||++||||+++....++.++.........
T Consensus         6 ~~~p~~~v~~~i~~~-~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~   84 (145)
T COG1051           6 YRTPLVAVGALIVRN-GRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRG   84 (145)
T ss_pred             CCCcceeeeEEEEeC-CEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCce
Confidence            456777888888887 49999999766 7899999999999999999999999999999998888888887655444333


Q ss_pred             ccEEEEEEeccCCccCCC-CcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITK-DDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~  124 (124)
                      +++.+++......+.+.. ..++...+.|++
T Consensus        85 ~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~  115 (145)
T COG1051          85 HHVSFLFFAAEPEGELLAGDGDDAAEVGWFP  115 (145)
T ss_pred             eEEEEEEEEEecCCCcccCChhhHhhcceec
Confidence            455555554443333333 334666676764

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.89  E-value=3.1e-22  Score=122.31  Aligned_cols=103  Identities=25%  Similarity=0.371  Sum_probs=73.2

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc-c--CCcCccc
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH-K--AAFGCSD   96 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~-~--~~~~~~~   96 (124)
                      .+++.+++++.++++||+||.. ++|.|++|||++++|||+++||+||++||||+++....+....... .  .....+.
T Consensus         2 ~~~v~~~i~~~~~~iLL~r~~~-~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04696           2 LVTVGALIYAPDGRILLVRTTK-WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHF   80 (125)
T ss_pred             ccEEEEEEECCCCCEEEEEccC-CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEE
Confidence            4578888899778999998753 5799999999999999999999999999999998866655442221 1  1111223


Q ss_pred             EEEEEEeccCCccCCCCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +++.|.+........ ..+|+.+++|++
T Consensus        81 ~~~~~~~~~~~~~~~-~~~e~~~~~W~~  107 (125)
T cd04696          81 VLFDFFARTDGTEVT-PNEEIVEWEWVT  107 (125)
T ss_pred             EEEEEEEEecCCccc-CCcccceeEEEC
Confidence            334444443333333 356889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.89  E-value=1.7e-22  Score=123.57  Aligned_cols=102  Identities=23%  Similarity=0.341  Sum_probs=74.0

Q ss_pred             eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC----ccc
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG----CSD   96 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~----~~~   96 (124)
                      ++.++++++ +++||++|+.. .++.|.+|||++++||++++||+||++||||+++....++...........    ...
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHH   80 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccE
Confidence            567778887 89999999654 679999999999999999999999999999999887666655433221111    133


Q ss_pred             EEEEEEeccCCccC--CCCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQEI--TKDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~~--~~~~~e~~~~~W~~  124 (124)
                      +.++|.+.......  ....+|..++.|++
T Consensus        81 ~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~  110 (128)
T cd04684          81 LCVFYDARVVGGALPVQEPGEDSHGAAWLP  110 (128)
T ss_pred             EEEEEEEEEecCccccCCCCCCceeeEEEC
Confidence            44455554444332  34556788999986

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.89  E-value=4.1e-22  Score=120.73  Aligned_cols=99  Identities=34%  Similarity=0.553  Sum_probs=75.5

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc-cceeEEEeecccCCcCcccEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE-FHSVVAFRHTHKAAFGCSDIYFI  100 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~-~~~~~~~~~~~~~~~~~~~~~~~  100 (124)
                      ++.++++++++++||++|+.  .+.|.+|||++++|||+++||+||++||||+.+. ...++........  ......++
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~--~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~--~~~~~~~~   77 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTY--GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSAS--GSWDHVIV   77 (120)
T ss_pred             ceEEEEECCCCeEEEEEECC--CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCC--CCceEEEE
Confidence            57788899878999999864  3499999999999999999999999999999998 7776666543322  22344556


Q ss_pred             EEeccCCccCCCCcccccceeecC
Q psy9980         101 VRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      |.+.........+++|+.+++|++
T Consensus        78 f~~~~~~~~~~~~~~E~~~~~w~~  101 (120)
T cd04680          78 FRARADTQPVIRPSHEISEARFFP  101 (120)
T ss_pred             EEecccCCCccCCcccEEEEEEEC
Confidence            666555444345667889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.89  E-value=4.7e-22  Score=122.17  Aligned_cols=104  Identities=24%  Similarity=0.343  Sum_probs=72.7

Q ss_pred             eeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec-ccCCcC-cccE
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT-HKAAFG-CSDI   97 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~-~~~~~~-~~~~   97 (124)
                      .++.+++.+.++++||++|... .+|.|++|||+++.|||+.+||+||+.||||+++....++..... +..... ...+
T Consensus         2 ~av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd04681           2 AAVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL   81 (130)
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence            3677888888789999999644 678999999999999999999999999999999876555543321 111111 1122


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .++|.+..........++|+.+++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  108 (130)
T cd04681          82 DLFFVCQVDDKPIVKAPDDVAELKWVV  108 (130)
T ss_pred             EEEEEEEeCCCCCcCChHHhheeEEec
Confidence            223333333333344567889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.89  E-value=3.6e-22  Score=121.26  Aligned_cols=101  Identities=25%  Similarity=0.434  Sum_probs=72.6

Q ss_pred             eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC----cCccc
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA----FGCSD   96 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~----~~~~~   96 (124)
                      +++++++++ +++||++|... +++.|.+|||++++|||+++||.||++||||+++....++.........    .....
T Consensus         2 ~v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (122)
T cd04673           2 AVGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHY   80 (122)
T ss_pred             cEEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEE
Confidence            567777776 78999999654 6799999999999999999999999999999998766666554433221    11222


Q ss_pred             EEEEEEeccCCccCCCCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .++.|.+....... ..++|+.+++|++
T Consensus        81 ~~~~~~~~~~~~~~-~~~~E~~~~~w~~  107 (122)
T cd04673          81 VLIDFLCRYLGGEP-VAGDDALDARWVP  107 (122)
T ss_pred             EEEEEEEEeCCCcc-cCCcccceeEEEC
Confidence            33444444444333 3457889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=6.1e-22  Score=120.13  Aligned_cols=101  Identities=24%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             eEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc--ceeEEEeecccCCcCcccE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF--HSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~~~~~~~~~~   97 (124)
                      ++++++.++ +++||+||...  .+|.|++|||++++|||+++||+||+.||||+++..  ..++....... ......+
T Consensus         2 ~v~~vi~~~-~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~-~~~~~~~   79 (120)
T cd04683           2 AVYVLLRRD-DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT-EDIESRI   79 (120)
T ss_pred             cEEEEEEEC-CEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC-CCCceEE
Confidence            566777776 79999998543  579999999999999999999999999999998873  33444332221 1122334


Q ss_pred             EEEEEeccCCccCC-CCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEIT-KDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~-~~~~e~~~~~W~~  124 (124)
                      .++|.+....+.+. .+++|+.+++|++
T Consensus        80 ~~~f~~~~~~~~~~~~~~~e~~~~~W~~  107 (120)
T cd04683          80 GLFFTVRRWSGEPRNCEPDKCAELRWFP  107 (120)
T ss_pred             EEEEEEEeecCccccCCCCcEeeEEEEc
Confidence            44444443333332 3457888999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=1.1e-21  Score=121.86  Aligned_cols=103  Identities=22%  Similarity=0.293  Sum_probs=72.1

Q ss_pred             eeeEEEEEEcCC-CcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE------EeecccCCc
Q psy9980          20 MIGAGAVVLNDK-NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA------FRHTHKAAF   92 (124)
Q Consensus        20 ~~~~~~~v~~~~-~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~------~~~~~~~~~   92 (124)
                      +.++++++++++ +++||++|+.  .+.|.+|||++++||++++||.||++||||+++.......      ....+....
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   79 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK--LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPK   79 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC--CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCC
Confidence            457888888876 8999999853  5899999999999999999999999999999876544432      111111111


Q ss_pred             ----CcccEEEEEEeccCCccCC-CCcccccceeecC
Q psy9980          93 ----GCSDIYFIVRLKPLTQEIT-KDDREITESKWMD  124 (124)
Q Consensus        93 ----~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~  124 (124)
                          ...++.++|.+....+... ..++|..+++|++
T Consensus        80 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~  116 (138)
T cd03674          80 RGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFP  116 (138)
T ss_pred             CCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEc
Confidence                1223334555544444433 2567889999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=1.5e-21  Score=120.15  Aligned_cols=109  Identities=24%  Similarity=0.402  Sum_probs=79.1

Q ss_pred             CCCCCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc
Q psy9980          10 ESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH   88 (124)
Q Consensus        10 ~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~   88 (124)
                      .|....+.++..++.+++.++ +++||++|... ..|.|++|||++++||++++||+||++||||+++....++++....
T Consensus         3 ~~~~~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~   81 (130)
T cd04511           3 DCGYIHYQNPKIIVGCVPEWE-GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP   81 (130)
T ss_pred             CCccccCCCCcEEEEEEEecC-CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC
Confidence            455566677788888888877 79999999644 6789999999999999999999999999999998766666554321


Q ss_pred             cCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          89 KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                          ....++++|.+......+. ...|..+.+|++
T Consensus        82 ----~~~~~~~~f~~~~~~~~~~-~~~e~~~~~~~~  112 (130)
T cd04511          82 ----HISQVYMFYRARLLDLDFA-PGPESLEVRLFT  112 (130)
T ss_pred             ----CceEEEEEEEEEEcCCccc-CCcchhceEEEC
Confidence                1223444455444443333 345678888875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.88  E-value=8.2e-22  Score=122.79  Aligned_cols=102  Identities=25%  Similarity=0.330  Sum_probs=65.3

Q ss_pred             eEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee-----cccCCcC
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH-----THKAAFG   93 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~-----~~~~~~~   93 (124)
                      .+.+.+++.++++||+||+..   ++|.|++|||++++|||+++||+||+.||||+++....+.....     ...+...
T Consensus         5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T PRK15472          5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADG   84 (141)
T ss_pred             eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCC
Confidence            344444444589999998543   67999999999999999999999999999999875433221100     0001111


Q ss_pred             c---c-cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 C---S-DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 ~---~-~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .   . .+++++.+......+.. ++|+.+++|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~  118 (141)
T PRK15472         85 RKEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVK  118 (141)
T ss_pred             CceeEEEEEEEEEeecCCCcccC-ChhhheEEEcc
Confidence            1   1 12233444444433333 57889999986

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=1.2e-21  Score=119.49  Aligned_cols=98  Identities=31%  Similarity=0.451  Sum_probs=71.9

Q ss_pred             eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI  100 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (124)
                      .+++++++.++++||++|... .++.|.+|||+++.||++++||+||++||||+++....++......     ...+.++
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~-----~~~~~~~   76 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG-----GSWFRFV   76 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC-----CeEEEEE
Confidence            466777887789999999544 6899999999999999999999999999999999877766653221     2234445


Q ss_pred             EEeccCCccCCC---CcccccceeecC
Q psy9980         101 VRLKPLTQEITK---DDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~~~~~---~~~e~~~~~W~~  124 (124)
                      |.+....+.+..   +..|+.+++|++
T Consensus        77 f~a~~~~g~~~~~~~~~~e~~~~~W~~  103 (123)
T cd04671          77 FTGNITGGDLKTEKEADSESLQARWYS  103 (123)
T ss_pred             EEEEEeCCeEccCCCCCcceEEEEEEC
Confidence            555444433222   345677999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=7.5e-22  Score=120.94  Aligned_cols=101  Identities=25%  Similarity=0.328  Sum_probs=69.7

Q ss_pred             eEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      ++.++++++++++||+||...   .+|.|++| ||++++||++ +||+||++||||+++....+............ ...
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~~   79 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEG-FDD   79 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCC-eEE
Confidence            567788887789999999543   57899998 8999999999 99999999999999874433222211111112 222


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ++++...........+++|+.+++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~E~~~~~w~~  106 (127)
T cd04693          80 YYLFYADVEIGKLILQKEEVDEVKFVS  106 (127)
T ss_pred             EEEEEecCcccccccCHHHhhhEEEeC
Confidence            334444333344455678899999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.88  E-value=1.9e-21  Score=120.09  Aligned_cols=102  Identities=25%  Similarity=0.295  Sum_probs=69.6

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV  101 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (124)
                      ++++++.++ +++||++|....++.|.+|||++++|||+.+||.||++||||+++....++..............+.++|
T Consensus         2 ~v~~ii~~~-~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f   80 (134)
T cd03675           2 TVAAVVERD-GRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF   80 (134)
T ss_pred             eEEEEEEEC-CEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEE
Confidence            455565555 7999999965567899999999999999999999999999999988766666543221211222233334


Q ss_pred             EeccCCccCC-CCcccccceeecC
Q psy9980         102 RLKPLTQEIT-KDDREITESKWMD  124 (124)
Q Consensus       102 ~~~~~~~~~~-~~~~e~~~~~W~~  124 (124)
                      .+........ ...+|+.++.|++
T Consensus        81 ~~~~~~~~~~~~~~~e~~~~~w~~  104 (134)
T cd03675          81 AAELLEHLPDQPLDSGIVRAHWLT  104 (134)
T ss_pred             EEEECCCCCCCCCCCCceeeEEEe
Confidence            4433332222 2346788999985

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.87  E-value=2.1e-21  Score=120.29  Aligned_cols=101  Identities=22%  Similarity=0.239  Sum_probs=72.9

Q ss_pred             eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI  100 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (124)
                      ++.+++.++ +++||++|... +.+.|.+|||+++.|||+.+||+||+.||||+++....++................++
T Consensus         3 ~~~~~i~~~-~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T cd03427           3 TTLCFIKDP-DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFV   81 (137)
T ss_pred             EEEEEEEEC-CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEE
Confidence            455666666 79999999654 6899999999999999999999999999999998877766655432222123345555


Q ss_pred             EEeccCCccCCCCcccccceeecC
Q psy9980         101 VRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      |.+......+. ..+|..+++|++
T Consensus        82 f~~~~~~~~~~-~~~e~~~~~W~~  104 (137)
T cd03427          82 FLATEFEGEPL-KESEEGILDWFD  104 (137)
T ss_pred             EEECCcccccC-CCCccccceEEc
Confidence            55554444333 245557889985

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=1.6e-21  Score=118.68  Aligned_cols=99  Identities=21%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             EEEEEEcCCCcEEEEEecCC----CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEE
Q psy9980          23 AGAVVLNDKNQVLVVKEFYR----KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY   98 (124)
Q Consensus        23 ~~~~v~~~~~~iLl~~r~~~----~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   98 (124)
                      +++++.++ +++||++|...    ++|.|++|||+++.||++++||.||+.||||+++....+......... . .....
T Consensus         4 ~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-~-~~~~~   80 (122)
T cd04682           4 ALALLIGD-GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA-S-PPGTE   80 (122)
T ss_pred             EEEEEEcC-CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC-C-CCceE
Confidence            44455555 89999999532    679999999999999999999999999999999864333222211111 1 12233


Q ss_pred             EEEEeccCCc-cCCCCcccccceeecC
Q psy9980          99 FIVRLKPLTQ-EITKDDREITESKWMD  124 (124)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~e~~~~~W~~  124 (124)
                      ++|.+..... ....+.+|+.++.|++
T Consensus        81 ~~f~~~~~~~~~~~~~~~E~~~~~W~~  107 (122)
T cd04682          81 HVFVVPLTAREDAILFGDEGQALRLMT  107 (122)
T ss_pred             EEEEEEEecCCCccccCchhheeeccc
Confidence            3333333322 2345678999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.87  E-value=1.5e-21  Score=122.49  Aligned_cols=58  Identities=26%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      ++.++++++++.++++||++|+. .++.|++|||++++|||+++||+||++||||+++.
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~-~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   63 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD-DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVL   63 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC-CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCcc
Confidence            56789999998878999998854 46899999999999999999999999999999883

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.87  E-value=1.4e-21  Score=119.98  Aligned_cols=102  Identities=31%  Similarity=0.423  Sum_probs=71.0

Q ss_pred             eeEEEEEEcCC---CcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--cCcc
Q psy9980          21 IGAGAVVLNDK---NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA--FGCS   95 (124)
Q Consensus        21 ~~~~~~v~~~~---~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~~~~   95 (124)
                      .++++++++.+   +++||++|+.  .+.|.||||++++|||+++||.||++||||+++.....+.........  ....
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~--~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPR--GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVH   79 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCC--CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcc
Confidence            45677777754   7899999964  389999999999999999999999999999998866655543322111  1222


Q ss_pred             cEEEEEEeccCCccCCC-CcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITK-DDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~  124 (124)
                      ...++|.+......... .++|+.++.|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~  109 (131)
T cd03673          80 KTVHWWLMRALGGEFTPQPDEEVDEVRWLP  109 (131)
T ss_pred             eEEEEEEEEEcCCCcccCCCCcEEEEEEcC
Confidence            33334444433333333 567889999986

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=1.9e-21  Score=119.61  Aligned_cols=105  Identities=28%  Similarity=0.389  Sum_probs=73.3

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec---ccC-CcC
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT---HKA-AFG   93 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~---~~~-~~~   93 (124)
                      .+..++.+++++.++++||++|..  .+.|++|||++++|||+.+||.||++||||+++....++.....   +.. ..+
T Consensus         5 ~~~~~~~~~v~~~~~~vLL~~r~~--~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~   82 (132)
T cd04677           5 LILVGAGVILLNEQGEVLLQKRSD--TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGD   82 (132)
T ss_pred             ccccceEEEEEeCCCCEEEEEecC--CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCC
Confidence            456778888888878999999864  38999999999999999999999999999999887666644321   110 111


Q ss_pred             -cccEEEE-EEeccCCccCCCCcccccceeecC
Q psy9980          94 -CSDIYFI-VRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 -~~~~~~~-~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                       ....+.+ +........+..+.+|..+++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  115 (132)
T cd04677          83 DEQYIVTLYYVTKVFGGKLVPDGDETLELKFFS  115 (132)
T ss_pred             cEEEEEEEEEEEeccCCcccCCCCceeeEEEEC
Confidence             1122222 222222333345667889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=2.1e-21  Score=118.35  Aligned_cols=102  Identities=23%  Similarity=0.347  Sum_probs=73.8

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc--Cc-c
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF--GC-S   95 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--~~-~   95 (124)
                      +.+.++++++++ +++||.+|+.  .+.|.+|||++++|||+.+||+||++||||+.+...+++..........  .. .
T Consensus         1 p~~~v~~~i~~~-~~vLL~~~~~--~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~   77 (123)
T cd04672           1 PKVDVRAAIFKD-GKILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQ   77 (123)
T ss_pred             CcceEEEEEEEC-CEEEEEEEcC--CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceE
Confidence            356788888887 7999999864  6999999999999999999999999999999887777776654332222  11 1


Q ss_pred             cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .+.++|.+......+... +|..+++|++
T Consensus        78 ~~~~~f~~~~~~~~~~~~-~E~~~~~W~~  105 (123)
T cd04672          78 VYKLFFLCEILGGEFKPN-IETSEVGFFA  105 (123)
T ss_pred             EEEEEEEEEecCCcccCC-CceeeeEEEC
Confidence            223344444434343343 7889999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=1.9e-21  Score=119.36  Aligned_cols=103  Identities=19%  Similarity=0.149  Sum_probs=72.3

Q ss_pred             eEEEEEEcC--CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec---ccCCcC-cc
Q psy9980          22 GAGAVVLND--KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT---HKAAFG-CS   95 (124)
Q Consensus        22 ~~~~~v~~~--~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~---~~~~~~-~~   95 (124)
                      .+.+++++.  ++++||+||....++.|++|||+++.|||+.+||.||++||||+++....++.....   +..... ..
T Consensus         3 ~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (129)
T cd04664           3 SVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGRV   82 (129)
T ss_pred             EEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCceE
Confidence            567777776  789999999654689999999999999999999999999999999865555554321   111111 22


Q ss_pred             cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ...++|.+..........++|+.++.|++
T Consensus        83 ~~~~~f~~~~~~~~~~~~~~E~~~~~W~~  111 (129)
T cd04664          83 WTEHPFAFHLPSDAVVTLDWEHDAFEWVP  111 (129)
T ss_pred             EEEeEEEEEcCCCCcccCCccccccEecC
Confidence            23344444443332233457889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.87  E-value=1e-21  Score=120.99  Aligned_cols=99  Identities=25%  Similarity=0.370  Sum_probs=71.5

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV  101 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (124)
                      ++.+++.++++++||++|+....|.|++|||+++.||++++||+||++||||+++....++.....   ... ..+.+.|
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~---~~~-~~~~~~f   77 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPW---PFP-SSLMLGF   77 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCC---CCC-ceEEEEE
Confidence            455666777689999998543479999999999999999999999999999999876665544211   111 2333344


Q ss_pred             EeccCCccCCCCcccccceeecC
Q psy9980         102 RLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       102 ~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .+..........++|+.++.|++
T Consensus        78 ~~~~~~~~~~~~~~E~~~~~w~~  100 (131)
T cd03429          78 TAEADSGEIVVDDDELEDARWFS  100 (131)
T ss_pred             EEEEcCCcccCCchhhhccEeec
Confidence            44444344455677889999986

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.87  E-value=2.3e-21  Score=120.14  Aligned_cols=103  Identities=19%  Similarity=0.139  Sum_probs=71.9

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      +.++.++++++++++||++|...  .++.|++|||+++.||++.+||+||++||||+++.....+......  .......
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~--~~~~~~~   79 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPS--PGFSDER   79 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecC--CcccCcc
Confidence            45788899998899999987433  5679999999999999999999999999999998644444433221  1111222


Q ss_pred             EEEEEeccCCcc--CCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQE--ITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~--~~~~~~e~~~~~W~~  124 (124)
                      +.+|.+......  ....++|+.+++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~  108 (137)
T cd03424          80 IHLFLAEDLSPGEEGLLDEGEDIEVVLVP  108 (137)
T ss_pred             EEEEEEEcccccccCCCCCCCeeEEEEec
Confidence            333333333222  345667899999986

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.87  E-value=1.5e-21  Score=123.67  Aligned_cols=103  Identities=19%  Similarity=0.162  Sum_probs=71.6

Q ss_pred             eeEEEEEEcCC--CcEEEEEecCC---CCCCeeccceeecCC-CCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          21 IGAGAVVLNDK--NQVLVVKEFYR---KRPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        21 ~~~~~~v~~~~--~~iLl~~r~~~---~~~~w~~PgG~~~~g-Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      .++.+++.+.+  +++||+||...   ++|.|++|||++++| ||+++||+||++||||+++....++............
T Consensus         3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~   82 (157)
T cd03426           3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGF   82 (157)
T ss_pred             eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCC
Confidence            35566666643  58999999653   689999999999999 9999999999999999998876666554322222222


Q ss_pred             ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....+++.+... ..+..+++|+.++.|++
T Consensus        83 ~v~~~~~~~~~~-~~~~~~~~E~~~~~W~~  111 (157)
T cd03426          83 VVTPVVGLVPPP-LPLVLNPDEVAEVFEVP  111 (157)
T ss_pred             EEEEEEEEECCC-CCCCCCHHHhheeEEEc
Confidence            222233333222 24455677999999986

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=2.3e-21  Score=117.97  Aligned_cols=65  Identities=26%  Similarity=0.469  Sum_probs=54.8

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH   86 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~   86 (124)
                      .++++++++++++||++|.....+.|.||||+++.|||+++||+||++||||+++....++....
T Consensus         2 ~~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~   66 (121)
T cd04669           2 RASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVN   66 (121)
T ss_pred             ceEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEe
Confidence            45677777668999999965456899999999999999999999999999999997766666543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=4.5e-21  Score=117.59  Aligned_cols=103  Identities=23%  Similarity=0.296  Sum_probs=70.5

Q ss_pred             eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC-----C-cCc
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA-----A-FGC   94 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-----~-~~~   94 (124)
                      .++++++.++ +++||++|....++.|.+|||++++|||+++||+||+.||||+++...++..+......     . ...
T Consensus         2 ~~a~~iv~~~-~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04687           2 NSAKAVIIKN-DKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF   80 (128)
T ss_pred             cEEEEEEEEC-CEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence            5677777775 79999999644568899999999999999999999999999999886666555432211     1 112


Q ss_pred             ccEEEEEEeccCCccC---C-CCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEI---T-KDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~---~-~~~~e~~~~~W~~  124 (124)
                      +.+.++|.+....+..   . ..+++..+++|++
T Consensus        81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~  114 (128)
T cd04687          81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLK  114 (128)
T ss_pred             eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEc
Confidence            3344445444433221   1 1233456899985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=3.4e-21  Score=117.94  Aligned_cols=100  Identities=19%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             eEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      ++++++++.++++||++|...   .+|.|++ |||++++||++++||+||+.||||+++.....+......  .......
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~--~~~~~~~   79 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYD--TDGNRVW   79 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEec--CCCceEE
Confidence            678899998899999998533   5899999 699999999999999999999999988744444333211  1111222


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+|.+.. ......+++|+.+++|++
T Consensus        80 ~~~f~~~~-~~~~~~~~~E~~~~~w~~  105 (126)
T cd04697          80 GKVFSCVY-DGPLKLQEEEVEEITWLS  105 (126)
T ss_pred             EEEEEEEE-CCCCCCCHhHhhheEEcC
Confidence            22333332 234445678889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.87  E-value=4.6e-21  Score=120.23  Aligned_cols=105  Identities=25%  Similarity=0.430  Sum_probs=73.7

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee---cccCC----
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH---THKAA----   91 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~---~~~~~----   91 (124)
                      .+.++.+++++.++++||++|.... +.|++|||++++||++.+||+||+.||||+++....++....   .+...    
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~-~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~   80 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTP-GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELK   80 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCC-CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhh
Confidence            3568889999877899999996433 899999999999999999999999999999987666655421   01000    


Q ss_pred             -------c-CcccEEEEEEeccCCccCCC---CcccccceeecC
Q psy9980          92 -------F-GCSDIYFIVRLKPLTQEITK---DDREITESKWMD  124 (124)
Q Consensus        92 -------~-~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~W~~  124 (124)
                             . +...+++++.+.........   .++|+.+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~  124 (147)
T cd03671          81 LKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVP  124 (147)
T ss_pred             ccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCC
Confidence                   0 11223444444432233333   256899999986

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.86  E-value=2.4e-21  Score=130.97  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=84.4

Q ss_pred             CCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980           7 DDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH   86 (124)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~   86 (124)
                      .+..|....++++..++.+++.++ +++||++|.....|.|++|||++++|||+++||+||++||||+++...+++....
T Consensus       119 ~C~~c~~~~yp~~~paViv~V~~~-~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~  197 (256)
T PRK00241        119 LCPHCRERYYPRIAPCIIVAVRRG-DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQP  197 (256)
T ss_pred             ECCCCCCEECCCCCCEEEEEEEeC-CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEe
Confidence            355677777787777777777665 7999999854457999999999999999999999999999999988666665432


Q ss_pred             cccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          87 THKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .   .+ ...+++.|.+....+.+..+++|..+++|++
T Consensus       198 ~---~~-p~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~  231 (256)
T PRK00241        198 W---PF-PHSLMLGFHADYDSGEIVFDPKEIADAQWFR  231 (256)
T ss_pred             e---cC-CCeEEEEEEEEecCCcccCCcccEEEEEEEC
Confidence            1   11 1234455555555555666677999999986

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=4.5e-21  Score=117.21  Aligned_cols=103  Identities=31%  Similarity=0.461  Sum_probs=71.2

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc----cCCcC--
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH----KAAFG--   93 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~----~~~~~--   93 (124)
                      +..+++++.++++++||+||..  .|.|.+|||+++.||++++||+||++||||+++....+++.....    ....+  
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~--~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSD--NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDV   79 (129)
T ss_pred             cceEEEEEECCCCeEEEEEecC--CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCc
Confidence            4577888888878999999964  389999999999999999999999999999988766654332111    11111  


Q ss_pred             cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ...+.++|.+....+......+|..+++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~  110 (129)
T cd04676          80 RQYLDITFRCRVVGGELRVGDDESLDVAWFD  110 (129)
T ss_pred             EEEEEEEEEEEeeCCeecCCCCceeEEEEEC
Confidence            1233333433333333323456778899985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=4.8e-21  Score=117.26  Aligned_cols=103  Identities=28%  Similarity=0.422  Sum_probs=70.7

Q ss_pred             eeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      +++++++.++++++||+||...   ++|.|++|||++++|||+.+||+||+.||||+++....+......+.........
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI   81 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence            4677788887689999999543   4899999999999999999999999999999988765553222122111112333


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ++++.+..... ....++|..+++|++
T Consensus        82 ~~~~~~~~~~~-~~~~~~e~~~~~w~~  107 (129)
T cd04699          82 YLVFVCEALSG-AVKLSDEHEEYAWVT  107 (129)
T ss_pred             EEEEEeeecCC-cccCChhheEEEEec
Confidence            34444433322 223456788899985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=1.2e-20  Score=114.20  Aligned_cols=96  Identities=23%  Similarity=0.292  Sum_probs=64.4

Q ss_pred             EEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980          23 AGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF   99 (124)
Q Consensus        23 ~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   99 (124)
                      +++++.++ +++||+||...   .+|.|+||||++++||++++||+||+.||||+++.....+......   ......+.
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~---~~~~~~~~   78 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHP---TSELQLLH   78 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEecc---CCCeEEEE
Confidence            34455555 79999998532   6799999999999999999999999999999986433333322221   11222333


Q ss_pred             EEEeccCCccCCCCcccccceeecC
Q psy9980         100 IVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +|.+....+.+  ..+|+.++.|++
T Consensus        79 ~~~~~~~~~~~--~~~E~~~~~W~~  101 (117)
T cd04691          79 YYVVTFWQGEI--PAQEAAEVHWMT  101 (117)
T ss_pred             EEEEEEecCCC--CcccccccEEcC
Confidence            33333333332  347889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.86  E-value=1.5e-20  Score=118.90  Aligned_cols=107  Identities=23%  Similarity=0.373  Sum_probs=74.5

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee---cccC---
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH---THKA---   90 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~---~~~~---   90 (124)
                      ...+.++.+++++.+|++||+||.. .++.|++|||++++||++++||.||+.||||+++....++....   .+..   
T Consensus         5 ~~~~~~v~~~i~~~~g~vLL~~r~~-~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~   83 (156)
T PRK00714          5 DGYRPNVGIILLNRQGQVFWGRRIG-QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKR   83 (156)
T ss_pred             CCCCCeEEEEEEecCCEEEEEEEcC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHH
Confidence            3467789999999889999999964 35899999999999999999999999999999987555554421   0100   


Q ss_pred             --------CcCcccEEEEEEeccCCccCCC---CcccccceeecC
Q psy9980          91 --------AFGCSDIYFIVRLKPLTQEITK---DDREITESKWMD  124 (124)
Q Consensus        91 --------~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~W~~  124 (124)
                              ..+...++|++...........   +++|+.+++|++
T Consensus        84 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~  128 (156)
T PRK00714         84 LVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVS  128 (156)
T ss_pred             HhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCC
Confidence                    0111223444444322223222   346899999986

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.86  E-value=5.2e-21  Score=119.71  Aligned_cols=55  Identities=36%  Similarity=0.630  Sum_probs=46.8

Q ss_pred             eEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980          22 GAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF   78 (124)
Q Consensus        22 ~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~   78 (124)
                      .+++++++. ++++||+||..  .+.|+||||++++|||+.+||+||++||||+++..
T Consensus         3 ~~gaii~~~~~~~vLLvr~~~--~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~   58 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGWK--SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISK   58 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEecC--CCCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence            466777774 46999999853  35999999999999999999999999999998764

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=6.7e-21  Score=119.10  Aligned_cols=105  Identities=13%  Similarity=0.109  Sum_probs=70.7

Q ss_pred             eeeEEEEEEcCC---CcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccce--eEEEeec-cc
Q psy9980          20 MIGAGAVVLNDK---NQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHS--VVAFRHT-HK   89 (124)
Q Consensus        20 ~~~~~~~v~~~~---~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~--~~~~~~~-~~   89 (124)
                      +.++.+++++.+   +++|+++|...   .+|.|++ |||++++|||+++||+||+.||||+.+....  .+..... +.
T Consensus         2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~   81 (144)
T cd04692           2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYD   81 (144)
T ss_pred             ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecc
Confidence            457888888866   79999999543   6899999 5999999999999999999999999875332  2322221 11


Q ss_pred             -C-CcCcccEEEEEEeccCC--ccCCCCcccccceeecC
Q psy9980          90 -A-AFGCSDIYFIVRLKPLT--QEITKDDREITESKWMD  124 (124)
Q Consensus        90 -~-~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~  124 (124)
                       . ......+..+|.+....  ..+..+++|+.+++|++
T Consensus        82 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~  120 (144)
T cd04692          82 HIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIP  120 (144)
T ss_pred             ccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEEC
Confidence             0 11111232333333222  34445678899999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=1.7e-20  Score=114.58  Aligned_cols=101  Identities=24%  Similarity=0.323  Sum_probs=69.9

Q ss_pred             eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC--cccEE
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG--CSDIY   98 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~--~~~~~   98 (124)
                      +++.+++.++ +++||++|+  ..+.|.+|||++++||++.+||+||++||||+++....++...........  ...+.
T Consensus         2 ~~~~~vi~~~-~~vLlv~~~--~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (125)
T cd04689           2 LRARAIVRAG-NKVLLARVI--GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEIN   78 (125)
T ss_pred             eEEEEEEEeC-CEEEEEEec--CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEE
Confidence            4677777765 799999985  357999999999999999999999999999999887766665432211111  22333


Q ss_pred             EEEEeccCCc--c-CCCCcccccceeecC
Q psy9980          99 FIVRLKPLTQ--E-ITKDDREITESKWMD  124 (124)
Q Consensus        99 ~~~~~~~~~~--~-~~~~~~e~~~~~W~~  124 (124)
                      ++|.+.....  . ....++++.+++|++
T Consensus        79 ~~f~~~~~~~~~~~~~~~~~e~~~~~W~~  107 (125)
T cd04689          79 HIFAVESSWLASDGPPQADEDHLSFSWVP  107 (125)
T ss_pred             EEEEEEcccccccCCccCccceEEEEEcc
Confidence            4444433321  1 122456788999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=1.5e-20  Score=115.03  Aligned_cols=100  Identities=22%  Similarity=0.350  Sum_probs=69.0

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc-C-CcCcccEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK-A-AFGCSDIYF   99 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-~-~~~~~~~~~   99 (124)
                      .++++++++ +++||+||..  .+.|.+|||++++||++.+||.||+.||||+++....++....... . ......+.+
T Consensus         3 ~v~~vi~~~-~~vLl~~~~~--~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04688           3 RAAAIIIHN-GKLLVQKNPD--ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF   79 (126)
T ss_pred             EEEEEEEEC-CEEEEEEeCC--CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEE
Confidence            455566665 4999998853  6899999999999999999999999999999988766665543221 1 111233444


Q ss_pred             EEEeccCCccCCC-------CcccccceeecC
Q psy9980         100 IVRLKPLTQEITK-------DDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~~~~~-------~~~e~~~~~W~~  124 (124)
                      +|.+....+....       +.+|+.++.|++
T Consensus        80 ~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  111 (126)
T cd04688          80 YYLVTLLDESLYQQDIEILEEEGEKIVFRWIP  111 (126)
T ss_pred             EEEEEeCCCcccccccceeccCCCEEEEEEee
Confidence            5555444333221       456788999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=2e-20  Score=113.09  Aligned_cols=99  Identities=24%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc--ceeEEEeecccCCcC-cccEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF--HSVVAFRHTHKAAFG-CSDIY   98 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~~~~~~-~~~~~   98 (124)
                      .+++++++.++++||+||+  ..+.|.+|||++++|||+++||+||++||||+.+..  ...+........... .....
T Consensus         2 ~~~~~v~~~~~~vLl~~r~--~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (118)
T cd04690           2 IAAALILVRDGRVLLVRKR--GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRA   79 (118)
T ss_pred             eEEEEEEecCCeEEEEEEC--CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEE
Confidence            3556666666899999886  358899999999999999999999999999998876  555544432211111 22344


Q ss_pred             EEEEeccCCccCCCCcccccceeecC
Q psy9980          99 FIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        99 ~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ++|.+.... .+. ..+|+.++.|++
T Consensus        80 ~~f~~~~~~-~~~-~~~e~~~~~W~~  103 (118)
T cd04690          80 TVYVAELTG-EPV-PAAEIEEIRWVD  103 (118)
T ss_pred             EEEEEcccC-CcC-CCchhhccEEec
Confidence            445544433 222 356889999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.86  E-value=5.2e-21  Score=117.54  Aligned_cols=106  Identities=30%  Similarity=0.428  Sum_probs=76.3

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC--
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG--   93 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~--   93 (124)
                      .+.++.+++++.++++||.+|...   .++.|.+|||++++|||+.+||+||+.||||+++.................  
T Consensus         1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~   80 (134)
T PF00293_consen    1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPE   80 (134)
T ss_dssp             EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESS
T ss_pred             CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCcc
Confidence            367899999998789999999654   469999999999999999999999999999999865555554433322222  


Q ss_pred             -cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 -CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 -~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                       ...+++.+..............|+.++.|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  112 (134)
T PF00293_consen   81 GEIVIFFIAELPSEQSEIQPQDEEISEVKWVP  112 (134)
T ss_dssp             EEEEEEEEEEEEEEESECHTTTTTEEEEEEEE
T ss_pred             cEEEEEEEEEEeCCccccCCCCccEEEEEEEE
Confidence             2223334444333334444445889999985

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.5e-20  Score=115.76  Aligned_cols=96  Identities=22%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe-ecccCCcCcccEEEEEEeccCC
Q psy9980          29 NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR-HTHKAAFGCSDIYFIVRLKPLT  107 (124)
Q Consensus        29 ~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  107 (124)
                      ++++++||.+|....+|.|.+|||++++|||+.+||+||++||||+++......... ..+........+..+|.+....
T Consensus        11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   90 (131)
T cd04695          11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPP   90 (131)
T ss_pred             CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecC
Confidence            466799999996546899999999999999999999999999999988643221111 1111112222233333333322


Q ss_pred             ccCCCCcccccceeecC
Q psy9980         108 QEITKDDREITESKWMD  124 (124)
Q Consensus       108 ~~~~~~~~e~~~~~W~~  124 (124)
                      .......+|+.+++|++
T Consensus        91 ~~~~~~~~E~~~~~W~~  107 (131)
T cd04695          91 HQEVVLNHEHTEYRWCS  107 (131)
T ss_pred             CCccccCchhcccEecC
Confidence            22223347899999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.85  E-value=2.2e-20  Score=119.24  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=73.9

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCcccceeE-EEe-ecccCCc-
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSVV-AFR-HTHKAAF-   92 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~-~~~-~~~~~~~-   92 (124)
                      +.++.++++++++++||+||...   .+|.|++| ||++++||++++||+||++||||+++....++ ... +...... 
T Consensus        30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  109 (165)
T cd02885          30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG  109 (165)
T ss_pred             eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence            66788888998899999999654   68999996 89999999999999999999999998765554 221 1111111 


Q ss_pred             -CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          93 -GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        93 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                       ....+.++|.+.... ....+++|+.+++|++
T Consensus       110 ~~~~~i~~~f~~~~~~-~~~~~~~Ev~~~~w~~  141 (165)
T cd02885         110 LVEHEIDHVFFARADV-TLIPNPDEVSEYRWVS  141 (165)
T ss_pred             ceeeEEEEEEEEEeCC-CCCCCccceeEEEEEC
Confidence             112233444444332 3344678899999986

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=4.5e-20  Score=115.13  Aligned_cols=104  Identities=22%  Similarity=0.407  Sum_probs=70.7

Q ss_pred             eeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc----eeEEEeec-ccC--
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH----SVVAFRHT-HKA--   90 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~----~~~~~~~~-~~~--   90 (124)
                      +.+++++++.++++||+||...   ++|.|++|||++++||++++||+||+.||+|+.+...    +++++..+ +..  
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            4677888888889999999542   6899999999999999999999999999999988653    34443221 111  


Q ss_pred             ---CcCccc-EEEEEEeccCC-----ccCCCCcccccceeecC
Q psy9980          91 ---AFGCSD-IYFIVRLKPLT-----QEITKDDREITESKWMD  124 (124)
Q Consensus        91 ---~~~~~~-~~~~~~~~~~~-----~~~~~~~~e~~~~~W~~  124 (124)
                         .....+ +.+++......     ..+.++++|+.+++|++
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~  124 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLD  124 (143)
T ss_pred             CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeC
Confidence               011122 22222222211     12334568999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.84  E-value=4.1e-20  Score=119.43  Aligned_cols=103  Identities=19%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      .+.++.+++++.++++||++|...   ++|.|+ +|||++++|||+++||+||+.||||+++.......... +... ..
T Consensus        36 ~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~-~~~~-~~  113 (180)
T PRK15393         36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFY-FEDE-NC  113 (180)
T ss_pred             ceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEE-ecCC-Cc
Confidence            456778888998899999998533   467775 79999999999999999999999999865443333221 1111 11


Q ss_pred             ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .....+|.+.. .+....+++|+.++.|++
T Consensus       114 ~~~~~~f~~~~-~~~~~~~~~E~~~~~W~~  142 (180)
T PRK15393        114 RVWGALFSCVS-HGPFALQEEEVSEVCWMT  142 (180)
T ss_pred             eEEEEEEEEEe-CCCCCCChHHeeEEEECC
Confidence            11222333332 334455678999999986

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1e-19  Score=110.87  Aligned_cols=100  Identities=23%  Similarity=0.269  Sum_probs=65.4

Q ss_pred             EEEEEEcC---CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc-eeEEEeecccCCc--Cccc
Q psy9980          23 AGAVVLND---KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH-SVVAFRHTHKAAF--GCSD   96 (124)
Q Consensus        23 ~~~~v~~~---~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~--~~~~   96 (124)
                      +.+++++.   .+++||++|+.  .+.|.+|||+++.|||+.+||+||++||||+++... .++..........  ....
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~--~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~   80 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRR--TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRC   80 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecC--CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceE
Confidence            45555553   35899998853  389999999999999999999999999999988765 5665543322211  1122


Q ss_pred             EEEEEEeccCCccCCCCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .+++|.+.........+..+..+++|++
T Consensus        81 ~~~~f~~~~~~~~~~~~~~e~~~~~W~~  108 (122)
T cd04666          81 EVAVFPLEVTEELDEWPEMHQRKRKWFS  108 (122)
T ss_pred             EEEEEEEEEeccccCCcccCceEEEEec
Confidence            3333333332222222345678899986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.83  E-value=6.3e-20  Score=112.64  Aligned_cols=100  Identities=29%  Similarity=0.332  Sum_probs=65.8

Q ss_pred             eeEEEEEEcCCC---cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe-ecccCC-cCcc
Q psy9980          21 IGAGAVVLNDKN---QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR-HTHKAA-FGCS   95 (124)
Q Consensus        21 ~~~~~~v~~~~~---~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~-~~~~~~-~~~~   95 (124)
                      .++.+++++.++   ++||.||+.   +.|.+|||++++|||+.+||+||+.||||+++....++... ..+... ....
T Consensus         3 ~~~g~vi~~~~~~~~~vLl~~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   79 (130)
T cd03428           3 RSAGAIIYRRLNNEIEYLLLQASY---GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKL   79 (130)
T ss_pred             eEEEEEEEEecCCCceEEEEEccC---CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcc
Confidence            456666666333   689998863   89999999999999999999999999999998865553111 111111 1122


Q ss_pred             cEEEEEEeccC-CccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPL-TQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~e~~~~~W~~  124 (124)
                      .++++|.+... ...+..+ +|..++.|++
T Consensus        80 ~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~  108 (130)
T cd03428          80 KTVTYFLAELRPDVEVKLS-EEHQDYRWLP  108 (130)
T ss_pred             eEEEEEEEEeCCCCccccc-cceeeEEeec
Confidence            33333443333 2233333 7889999986

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.83  E-value=1.1e-19  Score=115.19  Aligned_cols=105  Identities=16%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCccccee--EEEeecc-c
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSV--VAFRHTH-K   89 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~--~~~~~~~-~   89 (124)
                      ...+.++++++++++|++||+||+..   ++|.|++| ||+++.||  .+||+||++||||+++....+  +...... .
T Consensus        24 g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~  101 (158)
T TIGR02150        24 TPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRAR  101 (158)
T ss_pred             CCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEe
Confidence            45567888999998899999999643   78999997 89999999  499999999999999875542  2211111 1


Q ss_pred             CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ...+...+.++|.+.... .+.++++|+.++.|++
T Consensus       102 ~~~g~~~~~~~f~~~~~~-~~~~~~~Ev~~~~W~~  135 (158)
T TIGR02150       102 DAWGEHELCPVFFARAPV-PLNPNPEEVAEYRWVS  135 (158)
T ss_pred             cCCCcEEEEEEEEEecCC-cccCChhHeeeEEEeC
Confidence            111223344455444333 4455667999999986

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.83  E-value=1.3e-19  Score=117.52  Aligned_cols=106  Identities=13%  Similarity=0.225  Sum_probs=73.1

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCccc-ceeEEEeec-ccCC
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEF-HSVVAFRHT-HKAA   91 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~-~~~~~~~~~-~~~~   91 (124)
                      ..+.++.++++++++++||+||+..   ++|.|++| ||++++||++++||+||+.||||+++.. ..+...... ....
T Consensus        32 ~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  111 (184)
T PRK03759         32 PLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDP  111 (184)
T ss_pred             CeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecC
Confidence            4577888889998899999998533   67889986 8999999999999999999999998863 222222211 1111


Q ss_pred             cC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          92 FG--CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        92 ~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..  ...+.++|.+... +.+..+++|+.++.|++
T Consensus       112 ~~~~~~~~~~vf~~~~~-~~~~~~~~Ev~~~~W~~  145 (184)
T PRK03759        112 NGIVENEVCPVFAARVT-SALQPNPDEVMDYQWVD  145 (184)
T ss_pred             CCceeeEEEEEEEEEEC-CCCCCChhHeeeEEEEC
Confidence            11  1123334444333 34455678899999986

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=2.4e-19  Score=107.64  Aligned_cols=92  Identities=25%  Similarity=0.321  Sum_probs=63.1

Q ss_pred             EEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEEE
Q psy9980          23 AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVR  102 (124)
Q Consensus        23 ~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (124)
                      +++++.+ ++++||++|+   .|.|.+|||++++||++.+||.||+.||||+++.....+....   . .  ....++|.
T Consensus         3 a~~i~~~-~~~vLlv~r~---~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~---~-~--~~~~~~f~   72 (112)
T cd04667           3 ATVICRR-GGRVLLVRKS---GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVD---G-G--STRHHVFV   72 (112)
T ss_pred             eEEEEec-CCEEEEEEcC---CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEe---C-C--CEEEEEEE
Confidence            3444444 4799999994   4899999999999999999999999999999876544443321   1 1  12223343


Q ss_pred             eccCCccCCCCcccccceeecC
Q psy9980         103 LKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       103 ~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +.........+++|+.+++|++
T Consensus        73 ~~~~~~~~~~~~~e~~~~~W~~   94 (112)
T cd04667          73 ASVPPSAQPKPSNEIADCRWLS   94 (112)
T ss_pred             EEcCCcCCCCCchheeEEEEec
Confidence            3333222233467888999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.82  E-value=3.5e-19  Score=110.01  Aligned_cols=97  Identities=21%  Similarity=0.315  Sum_probs=63.3

Q ss_pred             EEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980          23 AGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI  100 (124)
Q Consensus        23 ~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (124)
                      +++++ +.++++||+||...  ++|.|+||||++++||++.+|++||+.||||+++....++....+...  .......+
T Consensus         7 ~~~ii-~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~~~~   83 (135)
T PRK10546          7 VAAII-ERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVS--GRRIHLHA   83 (135)
T ss_pred             EEEEE-ecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecC--CcEEEEEE
Confidence            34444 44579999999543  789999999999999999999999999999999876555443322211  11112223


Q ss_pred             EEeccCCccCCCCcccccceeecC
Q psy9980         101 VRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      |.+....+.+  ...|..+++|++
T Consensus        84 ~~~~~~~~~~--~~~e~~~~~W~~  105 (135)
T PRK10546         84 WHVPDFHGEL--QAHEHQALVWCT  105 (135)
T ss_pred             EEEEEecCcc--cccccceeEEcC
Confidence            3332222221  234567888975

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.82  E-value=4.5e-19  Score=108.44  Aligned_cols=65  Identities=23%  Similarity=0.423  Sum_probs=53.2

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF   84 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~   84 (124)
                      ...+++++.+++|++||+||...  ++|.|+||||++++||++.+||.||+.||+|+++.....+..
T Consensus         4 ~~~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~   70 (129)
T PRK10776          4 LQIAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEK   70 (129)
T ss_pred             eEEEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEE
Confidence            34455666777789999999654  689999999999999999999999999999998765444443

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=6.4e-19  Score=106.24  Aligned_cols=103  Identities=30%  Similarity=0.488  Sum_probs=72.0

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV  101 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (124)
                      ++++++.++++++||++|...+++.|.+|+|+++.||++.++|+||+.||+|+.+......................++|
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVF   81 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEE
Confidence            56778888768999999954357999999999999999999999999999999876444444433222222333444455


Q ss_pred             EeccCCccC-CCCcccccceeecC
Q psy9980         102 RLKPLTQEI-TKDDREITESKWMD  124 (124)
Q Consensus       102 ~~~~~~~~~-~~~~~e~~~~~W~~  124 (124)
                      .+....... .....|..+++|++
T Consensus        82 ~~~~~~~~~~~~~~~e~~~~~w~~  105 (123)
T cd02883          82 LARLVGGEPTLLPPDEISEVRWVT  105 (123)
T ss_pred             EEEeCCCCcCCCCCCccceEEEEc
Confidence            444433322 13456778888985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=5.9e-19  Score=108.71  Aligned_cols=61  Identities=28%  Similarity=0.372  Sum_probs=49.8

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc-ccceeEEEe
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT-EFHSVVAFR   85 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~-~~~~~~~~~   85 (124)
                      ++.++|+++ +++||+++..  .+.|.||||++++||++.+||+||++||||+++ .....+...
T Consensus         2 ~~~~ii~~~-~~vLLv~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~   63 (131)
T cd04686           2 AVRAIILQG-DKILLLYTKR--YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTY   63 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEcC--CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEE
Confidence            567777776 7999999853  368999999999999999999999999999987 344444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.81  E-value=2.8e-19  Score=110.31  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=62.8

Q ss_pred             CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe----ecccCC------cCcccEEEE
Q psy9980          31 KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR----HTHKAA------FGCSDIYFI  100 (124)
Q Consensus        31 ~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~----~~~~~~------~~~~~~~~~  100 (124)
                      ++++||+|++++..|.|.||||++++|||+++||+||+.||||+.+... +++..    ..+...      .......++
T Consensus        12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (132)
T cd04661          12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKAVRNEGIVGAKVFF   90 (132)
T ss_pred             CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcccccccCcccEEEE
Confidence            3689999996545689999999999999999999999999999987642 22110    011111      111234555


Q ss_pred             EEeccCCccCCCCcccccceeecC
Q psy9980         101 VRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      |.+...++.+.. .+|+.+++|++
T Consensus        91 f~~~~~~g~~~~-~~e~~~~~W~~  113 (132)
T cd04661          91 FKARYMSGQFEL-SQNQVDFKWLA  113 (132)
T ss_pred             EEEEEecCcccc-CCCcceeEecC
Confidence            655555554443 47889999986

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.80  E-value=8.9e-20  Score=122.58  Aligned_cols=116  Identities=20%  Similarity=0.269  Sum_probs=97.5

Q ss_pred             cCCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE
Q psy9980           4 WLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA   83 (124)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~   83 (124)
                      |-..++.|....++++..++.+++.+++ ++||.++....+|.+++-+|+|++|||+++|+.||++||+|++++..++++
T Consensus       128 ~~~~C~~cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~  206 (279)
T COG2816         128 WARVCPKCGHEHFPRIDPCVIVAVIRGD-EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVG  206 (279)
T ss_pred             eeeeCCCCCCccCCCCCCeEEEEEecCC-ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEe
Confidence            4445677888999999999999999984 588888854579999999999999999999999999999999999888776


Q ss_pred             EeecccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          84 FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..    ...-.+.+++.|.+...+++++.+..|..+.+||+
T Consensus       207 SQ----PWPfP~SLMigf~aey~sgeI~~d~~Eleda~WFs  243 (279)
T COG2816         207 SQ----PWPFPHSLMLGFMAEYDSGEITPDEGELEDARWFS  243 (279)
T ss_pred             cc----CCCCchhhhhhheeeeccccccCCcchhhhccccC
Confidence            53    33334567778888888888888889999999985

>TIGR00586 mutt mutator mutT protein

Probab=99.80  E-value=1.6e-18  Score=106.08  Aligned_cols=65  Identities=23%  Similarity=0.292  Sum_probs=53.5

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF   84 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~   84 (124)
                      ...+++++.++++++|+++|...  ++|.|+||||++++||++++++.||+.||+|+++.....+..
T Consensus         4 ~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~   70 (128)
T TIGR00586         4 QQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKL   70 (128)
T ss_pred             EEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE
Confidence            44556666677779999999544  789999999999999999999999999999998775544443

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.80  E-value=6.3e-19  Score=123.71  Aligned_cols=108  Identities=23%  Similarity=0.373  Sum_probs=70.9

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe---ecc--c
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR---HTH--K   89 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~---~~~--~   89 (124)
                      ++++.+++.++++.+ |++||++|... ++|.|.+|||++++|||+++||+||++||||+++....+....   ..+  +
T Consensus       199 ~~~~~vtv~avv~~~-g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p  277 (340)
T PRK05379        199 YPPTFVTVDAVVVQS-GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP  277 (340)
T ss_pred             CCCcceEEEEEEEEC-CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence            344557777777765 79999999654 6899999999999999999999999999999987654333221   111  1


Q ss_pred             CCc-CcccEEEEEEeccCCcc-C-CCCcccccceeecC
Q psy9980          90 AAF-GCSDIYFIVRLKPLTQE-I-TKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~-~-~~~~~e~~~~~W~~  124 (124)
                      ... ....+.++|.+....+. + ....+|..+++|++
T Consensus       278 ~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~  315 (340)
T PRK05379        278 GRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVP  315 (340)
T ss_pred             CCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEE
Confidence            111 11223333333322221 1 12456889999985

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.80  E-value=2.6e-18  Score=111.54  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             eEEEEEEcCCCcEEEEEec-CC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEF-YR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF   99 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~-~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   99 (124)
                      ++.++.+++++++||+++. .. ....|+||||.+++||++++||+||+.||||+++.....+......+....  ..+.
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~--~~~~  126 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFS--SKMN  126 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccC--cEEE
Confidence            4666666666789999883 33 678899999999999999999999999999999987766665432222222  2222


Q ss_pred             EEEeccCCc-cCCCCcccccceeecC
Q psy9980         100 IVRLKPLTQ-EITKDDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~-~~~~~~~e~~~~~W~~  124 (124)
                      +|.+..... .....+.|..++.|+|
T Consensus       127 ~f~a~~~~~~~~~~~e~E~i~~~~~~  152 (185)
T PRK11762        127 IVLAEDLYPERLEGDEPEPLEVVRWP  152 (185)
T ss_pred             EEEEEccccccCCCCCCceeEEEEEc
Confidence            333332222 1222345556677764

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.79  E-value=3.8e-18  Score=103.39  Aligned_cols=99  Identities=23%  Similarity=0.326  Sum_probs=66.8

Q ss_pred             eEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF   99 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   99 (124)
                      .+++++.++++++||++|+..  ++|.|+||||+++.+|+++++|.||+.||+|+++.....+....+...  ......+
T Consensus         3 ~~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~--~~~~~~~   80 (124)
T cd03425           3 VVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYP--DKRVTLH   80 (124)
T ss_pred             EEEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCC--CCeEEEE
Confidence            345566676689999999644  799999999999999999999999999999998775555444322211  1222333


Q ss_pred             EEEeccCCccCCCCcccccceeecC
Q psy9980         100 IVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +|.+.......  ...|..++.|++
T Consensus        81 ~~~~~~~~~~~--~~~e~~~~~W~~  103 (124)
T cd03425          81 VFLVELWSGEP--QLLEHQELRWVP  103 (124)
T ss_pred             EEEEeeeCCCc--ccccCceEEEee
Confidence            44333322221  245667888875

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=3.8e-18  Score=105.31  Aligned_cols=61  Identities=34%  Similarity=0.432  Sum_probs=52.6

Q ss_pred             eEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCc-ccceeE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT-EFHSVV   82 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~-~~~~~~   82 (124)
                      ++.+++++.++++||+++...   ..+.|.+|||++++||++.+||.||+.||||+++ ....++
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~   66 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPV   66 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceE
Confidence            678899998899999998543   5689999999999999999999999999999988 444443

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=8.3e-18  Score=101.55  Aligned_cols=99  Identities=23%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI  100 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (124)
                      .+++++..++ ++||.+|+.. ..|.|.||||++++||++.+||.||+.||+|+++....+.... .+.... ...+++.
T Consensus         6 ~av~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~-~~~~~~-~~~~~~~   82 (118)
T cd04674           6 VVVALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD-VRSAPD-GTLLVFG   82 (118)
T ss_pred             EEEEEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEE-EEecCC-CeEEEEE
Confidence            3333343443 4666666544 6799999999999999999999999999999988643332222 222222 2234444


Q ss_pred             EEeccCCccC--CCCcccccceeec
Q psy9980         101 VRLKPLTQEI--TKDDREITESKWM  123 (124)
Q Consensus       101 ~~~~~~~~~~--~~~~~e~~~~~W~  123 (124)
                      +.........  ...+.|..++.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~E~~~~~~~  107 (118)
T cd04674          83 LLPERRAADLPPFEPTDETTERAVV  107 (118)
T ss_pred             EEeccccccCCCCCCCcceeeEEEc
Confidence            4444443332  2356677777776

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=5.6e-18  Score=102.85  Aligned_cols=101  Identities=21%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             eEEEEEEc---CCCcEEEEEecC-----CCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980          22 GAGAVVLN---DKNQVLVVKEFY-----RKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG   93 (124)
Q Consensus        22 ~~~~~v~~---~~~~iLl~~r~~-----~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   93 (124)
                      ++++++++   +..++||++|..     +..+.|++|||+++.||++.+||+||++||||+++. ..+....... ....
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~-~~~~   79 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLK-QSGG   79 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEE-CCCC
Confidence            45566664   223689998632     246899999999999999999999999999999876 2222221111 1111


Q ss_pred             --------------cccEEEEEEeccCCccCCCC-cccccceeecC
Q psy9980          94 --------------CSDIYFIVRLKPLTQEITKD-DREITESKWMD  124 (124)
Q Consensus        94 --------------~~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~  124 (124)
                                    ......+|.....++.+... .+|..+++|||
T Consensus        80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~  125 (126)
T cd04662          80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD  125 (126)
T ss_pred             eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence                          11122334444334444443 68999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.78  E-value=6.3e-18  Score=109.92  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             eeeEEEEEE--cCCCcEEEEEecCC---CCCCeeccceeecCC-CCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980          20 MIGAGAVVL--NDKNQVLVVKEFYR---KRPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG   93 (124)
Q Consensus        20 ~~~~~~~v~--~~~~~iLl~~r~~~---~~~~w~~PgG~~~~g-Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   93 (124)
                      +.+++++.+  ++++.+|+.+|+..   ..|.|+||||.+|++ |++++||+||++||||++......++.........+
T Consensus        30 ~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  109 (190)
T PRK10707         30 RQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTG  109 (190)
T ss_pred             CCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCC
Confidence            334444444  34458888887533   678999999999985 689999999999999999887776665542212222


Q ss_pred             cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .....+++.. ........+++|..++.|+|
T Consensus       110 ~~~~~~v~~~-~~~~~~~~d~~Ev~~v~~vp  139 (190)
T PRK10707        110 YQVTPVVGII-PPDLPYRANEDEVAAVFEMP  139 (190)
T ss_pred             cEEEEEEEEE-CCCCCCCCChhhhheEEEEe
Confidence            2222222222 22223445677888999986

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=6.3e-18  Score=102.22  Aligned_cols=97  Identities=24%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV  101 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (124)
                      ++.+++.++ +++||++++   .+.|++|||++++||++++||+||++||+|+++.....+........ . ......+|
T Consensus         2 ~v~vi~~~~-~~vLl~~~~---~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~-~-~~~~~~~y   75 (118)
T cd04665           2 SVLVICFYD-DGLLLVRHK---DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLF-E-SGFETLVY   75 (118)
T ss_pred             EEEEEEEEC-CEEEEEEeC---CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCC-C-CcEEEEEE
Confidence            345555665 789999884   46899999999999999999999999999999876666665432221 1 22233334


Q ss_pred             EeccCCccCCCCcccccceeecC
Q psy9980         102 RLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       102 ~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .+............|+....|++
T Consensus        76 ~a~~~~~~~~~~~~E~~~~~~~~   98 (118)
T cd04665          76 PAVSAQLEEKASYLETDGPVLFK   98 (118)
T ss_pred             EEEEEecccccccccccCcEEec
Confidence            33333333223456777887764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.5e-17  Score=106.51  Aligned_cols=108  Identities=14%  Similarity=0.134  Sum_probs=70.9

Q ss_pred             cceeeeEEE--EEEcCC--CcEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccce---eEEEe
Q psy9980          17 AHTMIGAGA--VVLNDK--NQVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFHS---VVAFR   85 (124)
Q Consensus        17 ~~~~~~~~~--~v~~~~--~~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~---~~~~~   85 (124)
                      ...+.++.+  ++.|++  ++++++||+..   ++|.|+ +|+|++++||++++||+||++||||+++....   .++..
T Consensus        29 g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~  108 (180)
T cd03676          29 GLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVV  108 (180)
T ss_pred             CceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEE
Confidence            344455554  455654  78999999544   899996 89999999999999999999999999887433   22211


Q ss_pred             -ecccCCcC--cccEEEEEEeccC-CccCCCCcccccceeecC
Q psy9980          86 -HTHKAAFG--CSDIYFIVRLKPL-TQEITKDDREITESKWMD  124 (124)
Q Consensus        86 -~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~e~~~~~W~~  124 (124)
                       +.+.....  ...+.++|.+... ...+..+++|+.++.|++
T Consensus       109 ~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~  151 (180)
T cd03676         109 SYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLT  151 (180)
T ss_pred             EEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEEC
Confidence             11110111  2234444544322 223445678999999986

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PLN02709 nudix hydrolase

Probab=99.72  E-value=1.1e-16  Score=105.51  Aligned_cols=91  Identities=18%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             cEEEEEecCC---CCCCeeccceeecCCC-CHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEE-EEEEecc-C
Q psy9980          33 QVLVVKEFYR---KRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY-FIVRLKP-L  106 (124)
Q Consensus        33 ~iLl~~r~~~---~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~  106 (124)
                      .+||.+|+..   .+|.|+||||+++++| ++.+||+||+.||+|+.....++++....+.... ...+. ++..... .
T Consensus        52 ~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~s-g~~V~P~V~~~~~~~  130 (222)
T PLN02709         52 RVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKK-GMSVAPVIGFLHDKK  130 (222)
T ss_pred             EEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCC-CCEEEEEEEEecCCC
Confidence            7999999654   7899999999999974 7999999999999999988777777654432222 22222 2333322 1


Q ss_pred             CccCCCCcccccceeecC
Q psy9980         107 TQEITKDDREITESKWMD  124 (124)
Q Consensus       107 ~~~~~~~~~e~~~~~W~~  124 (124)
                      ...+.++++|+.++.|+|
T Consensus       131 ~~~~~~np~EV~~vf~vP  148 (222)
T PLN02709        131 AFKPLPNPAEVEEIFDVP  148 (222)
T ss_pred             CccccCChhhhheeEEec
Confidence            223345778999999986

>KOG3084|consensus

Probab=99.72  E-value=2.8e-18  Score=116.12  Aligned_cols=109  Identities=25%  Similarity=0.322  Sum_probs=78.3

Q ss_pred             CCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980          13 IPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA   91 (124)
Q Consensus        13 ~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~   91 (124)
                      ...+++....+.+++.+.+++.+|..|+.+ .+|.|..++|++++|||+++||+||++||+|+++..+.+....   +..
T Consensus       180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQ---PWP  256 (345)
T KOG3084|consen  180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQ---PWP  256 (345)
T ss_pred             CeeccCCCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecC---CCC
Confidence            445777888888888887776666555444 7899999999999999999999999999999999877655432   222


Q ss_pred             cCcccEEEEEE-eccCCccCCCCcc-cccceeecC
Q psy9980          92 FGCSDIYFIVR-LKPLTQEITKDDR-EITESKWMD  124 (124)
Q Consensus        92 ~~~~~~~~~~~-~~~~~~~~~~~~~-e~~~~~W~~  124 (124)
                      .....+++.+. +....+++..+.+ |..+.+||+
T Consensus       257 ~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~  291 (345)
T KOG3084|consen  257 LMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFD  291 (345)
T ss_pred             CCchHHHHHHHHHHhhCCccccCcchhhhhccccc
Confidence            12333333332 2223356666666 889999985

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.70  E-value=3.3e-16  Score=102.75  Aligned_cols=63  Identities=17%  Similarity=0.227  Sum_probs=49.2

Q ss_pred             eeEEEEEEcC-CCcEEEEEe-cCC-C-----CCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE
Q psy9980          21 IGAGAVVLND-KNQVLVVKE-FYR-K-----RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA   83 (124)
Q Consensus        21 ~~~~~~v~~~-~~~iLl~~r-~~~-~-----~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~   83 (124)
                      -++.++.+++ +++++|+++ ++. .     +-.|++|+|.+++||++++||+|||.||||+++.....+.
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~  120 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVL  120 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEE
Confidence            4566676764 468888888 443 2     2468999999999999999999999999999987544443

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.70  E-value=2.3e-16  Score=102.27  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             eeeEEEEEEcC-CCcEEEEEe-cCC------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980          20 MIGAGAVVLND-KNQVLVVKE-FYR------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF   84 (124)
Q Consensus        20 ~~~~~~~v~~~-~~~iLl~~r-~~~------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~   84 (124)
                      ..++++++++. ++++||+++ +..      .+..|++|+|++++||++++||+||++||||+++.....+..
T Consensus        44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~  116 (185)
T TIGR00052        44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLS  116 (185)
T ss_pred             CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEE
Confidence            34666777764 468999987 322      246789999999999999999999999999999876555443

>PRK08999 hypothetical protein; Provisional

Probab=99.70  E-value=3.8e-16  Score=108.66  Aligned_cols=101  Identities=21%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      ...+++++.++++++||+||...  ++|.|+||||++++||++.+|+.||+.||+|+++.....+....+. ..... ..
T Consensus         5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~-~~~~~-~~   82 (312)
T PRK08999          5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHD-YPDKR-VR   82 (312)
T ss_pred             eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEE-cCCCe-EE
Confidence            44555666776689999999544  7899999999999999999999999999999987654433332221 11111 12


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+|.+....+.  ....|..+++|++
T Consensus        83 i~~y~~~~~~~~--~~~~e~~~~~Wv~  107 (312)
T PRK08999         83 LDVRRVTAWQGE--PHGREGQPLAWVA  107 (312)
T ss_pred             EEEEEEEEecCc--ccCccCCccEEec
Confidence            223333222222  2234567778875

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.68  E-value=1.1e-15  Score=102.53  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=71.2

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCC-----------------HHHHHHHHHHHHhccC
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSED-----------------IGEAAVREVFEETNIR   75 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs-----------------~~~aa~RE~~EE~Gl~   75 (124)
                      ...+.++.++|+|.+|++||+||+..   ++|.|+.. +|++..||+                 ..+||+||+.|||||+
T Consensus        53 gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~  132 (247)
T PLN02552         53 GLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP  132 (247)
T ss_pred             CceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence            45677899999998899999999543   89999876 677666532                 6789999999999998


Q ss_pred             ccc-----ceeEEEeecccCCc------C---cccEEEEEEec-cCCccCCCCcccccceeecC
Q psy9980          76 TEF-----HSVVAFRHTHKAAF------G---CSDIYFIVRLK-PLTQEITKDDREITESKWMD  124 (124)
Q Consensus        76 ~~~-----~~~~~~~~~~~~~~------~---~~~~~~~~~~~-~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +..     ..+++.+.......      .   ...+.+++... .....+.++++|+.+++|++
T Consensus       133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs  196 (247)
T PLN02552        133 AEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVN  196 (247)
T ss_pred             ccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEe
Confidence            653     22333221111110      1   12222333222 23345677889999999985

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1.5e-15  Score=92.47  Aligned_cols=51  Identities=27%  Similarity=0.354  Sum_probs=40.3

Q ss_pred             EEEEEEcCCC--cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980          23 AGAVVLNDKN--QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT   76 (124)
Q Consensus        23 ~~~~v~~~~~--~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~   76 (124)
                      +.+++.+.++  ++|+.+..   .+.|.+|||.+++||++.+||.||+.||||+++
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~---~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHP---LAGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcC---CCcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            4555555443  55555553   356999999999999999999999999999987

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PLN02791 Nudix hydrolase homolog

Probab=99.65  E-value=1.5e-15  Score=114.75  Aligned_cols=108  Identities=14%  Similarity=0.148  Sum_probs=74.2

Q ss_pred             cceeeeEEEEEEcC-CCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEee-cc
Q psy9980          17 AHTMIGAGAVVLND-KNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRH-TH   88 (124)
Q Consensus        17 ~~~~~~~~~~v~~~-~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~-~~   88 (124)
                      ...+.++.+++++. ++++||+||+..   ++|.|++ +|||++.||++.+||+||+.||+||.+...  .++.... ..
T Consensus        29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~  108 (770)
T PLN02791         29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQEC  108 (770)
T ss_pred             CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEe
Confidence            34677889999985 589999999543   8999999 799999999999999999999999987533  2222211 11


Q ss_pred             ---cCCcCcccEEEEEEec--cC--CccCCCCcccccceeecC
Q psy9980          89 ---KAAFGCSDIYFIVRLK--PL--TQEITKDDREITESKWMD  124 (124)
Q Consensus        89 ---~~~~~~~~~~~~~~~~--~~--~~~~~~~~~e~~~~~W~~  124 (124)
                         ........++.+|.+.  ..  ...+.++++|+.+++|++
T Consensus       109 ~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvs  151 (770)
T PLN02791        109 VINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMS  151 (770)
T ss_pred             eccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEc
Confidence               1111122233333322  11  124566889999999985

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.65  E-value=3.2e-15  Score=94.07  Aligned_cols=61  Identities=30%  Similarity=0.297  Sum_probs=49.3

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH   86 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~   86 (124)
                      .+.+++..+ +++||.++.   ...|++|||++++|||+++||+||++||||+.+....+++...
T Consensus        26 ~V~ii~~~~-~~~LL~~~~---~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~   86 (156)
T TIGR02705        26 HVLVIPRYK-DQWLLTEHK---RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYE   86 (156)
T ss_pred             EEEEEEEEC-CEEEEEEEc---CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEE
Confidence            455555555 588888874   3569999999999999999999999999999988777776543

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.65  E-value=4.4e-15  Score=96.68  Aligned_cols=105  Identities=13%  Similarity=0.039  Sum_probs=62.9

Q ss_pred             eeeeEEEEEEcC-CCcEEEEEe-cCC-------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980          19 TMIGAGAVVLND-KNQVLVVKE-FYR-------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK   89 (124)
Q Consensus        19 ~~~~~~~~v~~~-~~~iLl~~r-~~~-------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~   89 (124)
                      ..-+++++++++ +++++|+++ +..       .+-.|++|+|.+++| ++++||+||+.||||+.+.....+......+
T Consensus        44 ~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~sp  122 (191)
T PRK15009         44 RGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSP  122 (191)
T ss_pred             ECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCC
Confidence            344666777774 568999888 443       223578999999976 6999999999999999987554444332222


Q ss_pred             CCcCcccEEEEEEeccC--CccCCCCcccccceeecC
Q psy9980          90 AAFGCSDIYFIVRLKPL--TQEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~  124 (124)
                      ...+...+.|+......  .......++|..++.|+|
T Consensus       123 G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~  159 (191)
T PRK15009        123 GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELP  159 (191)
T ss_pred             cccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEc
Confidence            22222222222222111  111122456667787875

>KOG0648|consensus

Probab=99.58  E-value=2.1e-15  Score=102.14  Aligned_cols=122  Identities=51%  Similarity=0.775  Sum_probs=99.3

Q ss_pred             cccCCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980           2 TKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF   78 (124)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~   78 (124)
                      ..|++... ...|......+.+.++++|.++++|+++-.+.   ..|.|-+|+|.++++|++.++|+||++||||++...
T Consensus        98 ~~Wl~e~~-~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef  176 (295)
T KOG0648|consen   98 TSWLREAP-STLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEF  176 (295)
T ss_pred             eeeecccc-ccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhh
Confidence            45787775 67777888999999999998789999986444   789999999999999999999999999999997766


Q ss_pred             ceeEEEeecccCCcC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          79 HSVVAFRHTHKAAFG--CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        79 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..++.....+.....  ..++++++.....+-....+..|+..++|++
T Consensus       177 ~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp  224 (295)
T KOG0648|consen  177 VEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMP  224 (295)
T ss_pred             hhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhccc
Confidence            666666655544444  6678888888777767777777888888885

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.56  E-value=6.3e-14  Score=90.55  Aligned_cols=42  Identities=31%  Similarity=0.445  Sum_probs=37.5

Q ss_pred             cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980          33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT   76 (124)
Q Consensus        33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~   76 (124)
                      ++|+++|+.  .|.|.||||++++||++.+||+||+.||||+.+
T Consensus        50 ~vLl~~r~~--~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          50 QFVAIKRPD--SGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             EEEEEEeCC--CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            678888853  589999999999999999999999999997654

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN03143 nudix hydrolase; Provisional

Probab=99.55  E-value=6.8e-14  Score=95.83  Aligned_cols=58  Identities=24%  Similarity=0.390  Sum_probs=43.7

Q ss_pred             eEEEEEE-cCCCc--EEEEEe-cCC-CCCCeeccceeecCC-CCHHHHHHHHHHHHhccCcccc
Q psy9980          22 GAGAVVL-NDKNQ--VLVVKE-FYR-KRPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTEFH   79 (124)
Q Consensus        22 ~~~~~v~-~~~~~--iLl~~r-~~~-~~~~w~~PgG~~~~g-Es~~~aa~RE~~EE~Gl~~~~~   79 (124)
                      ++++++. +.+++  ++|+++ +.+ .+-.|+||+|.+|++ |++++||+||++||||+.+...
T Consensus       130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~  193 (291)
T PLN03143        130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLE  193 (291)
T ss_pred             eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccc
Confidence            4444443 43344  777777 444 566899999999984 8999999999999999987543

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.54  E-value=9e-14  Score=86.06  Aligned_cols=63  Identities=33%  Similarity=0.450  Sum_probs=47.7

Q ss_pred             eEEEEEEcCC-CcEEEEEecCCCCCCeeccceeecCCCCHHH-HHHHHHHHHhccCcc--cceeEEEe
Q psy9980          22 GAGAVVLNDK-NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGE-AAVREVFEETNIRTE--FHSVVAFR   85 (124)
Q Consensus        22 ~~~~~v~~~~-~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~-aa~RE~~EE~Gl~~~--~~~~~~~~   85 (124)
                      ++.+++.... +++|+.+|+... +.|.+|||++++||++.+ ||+||++||||+++.  ........
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~-~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~   79 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDG-GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEF   79 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccC-CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeec
Confidence            4444444433 688998886533 699999999999998888 999999999999987  44444443

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=99.49  E-value=7.7e-14  Score=87.60  Aligned_cols=105  Identities=13%  Similarity=0.178  Sum_probs=79.4

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccceeEEE--eecc----
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF--RHTH----   88 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~----   88 (124)
                      -+.+.+++++|.+|++|++||+..   |++.|.- .+||.-+|||..+|++|.+..|+||.+.......+  ...|    
T Consensus        32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~  111 (185)
T COG1443          32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAAD  111 (185)
T ss_pred             HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccC
Confidence            477899999999999999999544   9999986 58999999999999999999999999873222221  1122    


Q ss_pred             cCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          89 KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ........+++++.+...+ .+.++++|+++++|++
T Consensus       112 ~~~~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~  146 (185)
T COG1443         112 PDGIVENEICPVLAARLDS-ALDPNPDEVMDYRWVS  146 (185)
T ss_pred             CCCcceeeeeeEEEEeecC-CCCCChHHhhheeccC
Confidence            1122233477777766665 6677889999999985

>KOG2839|consensus

Probab=99.49  E-value=1.1e-13  Score=84.58  Aligned_cols=66  Identities=30%  Similarity=0.458  Sum_probs=52.1

Q ss_pred             eeeeEEEEEEc-CCC--cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980          19 TMIGAGAVVLN-DKN--QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR   85 (124)
Q Consensus        19 ~~~~~~~~v~~-~~~--~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~   85 (124)
                      .+..++|+.+. .+.  ++||+..++ .+..|.+|+|++++|||..+||.||+.||.|+.-....++..+
T Consensus         8 ~r~vagCi~~r~~~~~ieVLlvsSs~-~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~   76 (145)
T KOG2839|consen    8 FRLVAGCICYRSDKEKIEVLLVSSSK-KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGF   76 (145)
T ss_pred             cEEEEEeeeeeecCcceEEEEEecCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccch
Confidence            44555566665 323  789998854 4689999999999999999999999999999988777655444

>KOG3069|consensus

Probab=99.29  E-value=1.8e-11  Score=80.40  Aligned_cols=92  Identities=17%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             cEEEEEecCC---CCCCeeccceeecCCC-CHHHHHHHHHHHHhccCcccceeEEEeecccCCcC-cccEEEEEEeccC-
Q psy9980          33 QVLVVKEFYR---KRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG-CSDIYFIVRLKPL-  106 (124)
Q Consensus        33 ~iLl~~r~~~---~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  106 (124)
                      .+||.||...   +.|.-.||||..|+.+ |-..+|.||+.||.|++.....+++.........+ ...-+..+..... 
T Consensus        59 ~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~  138 (246)
T KOG3069|consen   59 SVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKKI  138 (246)
T ss_pred             EEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecccc
Confidence            6888888433   8899999999999964 78899999999999999865555554332222211 1111222222221 


Q ss_pred             CccCCCCcccccceeecC
Q psy9980         107 TQEITKDDREITESKWMD  124 (124)
Q Consensus       107 ~~~~~~~~~e~~~~~W~~  124 (124)
                      -....++.+|+.++.|+|
T Consensus       139 l~~~~ln~gEv~~~F~VP  156 (246)
T KOG3069|consen  139 LPSLRLNSGEVESAFWVP  156 (246)
T ss_pred             cccccCCchheeeeeeee
Confidence            144566788999999986

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.26  E-value=9.4e-11  Score=70.36  Aligned_cols=53  Identities=23%  Similarity=0.177  Sum_probs=43.4

Q ss_pred             eeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhcc
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNI   74 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl   74 (124)
                      ..+++++.+ ++++||.||...  ++|+|+||+|.++.+++.+++..|++.++.++
T Consensus         4 ~~~~~ii~~-~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~   58 (118)
T cd03431           4 GIAVVVIRN-DGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL   58 (118)
T ss_pred             EEEEEEEec-CCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence            344555544 579999999654  89999999999999999999999999888764

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG3041|consensus

Probab=99.22  E-value=2.8e-10  Score=73.00  Aligned_cols=57  Identities=28%  Similarity=0.377  Sum_probs=42.6

Q ss_pred             eeEEEEEEc-CCCcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          21 IGAGAVVLN-DKNQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        21 ~~~~~~v~~-~~~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      +++.+++-. +.-.++|+++ +.+ ++=..++|+|-+|.||+++.||+||++||||+.-+
T Consensus        76 VaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk  135 (225)
T KOG3041|consen   76 VAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK  135 (225)
T ss_pred             EEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccce
Confidence            344444433 2226778877 443 55667899999999999999999999999999844

>PLN02839 nudix hydrolase

Probab=98.92  E-value=1.4e-08  Score=71.41  Aligned_cols=95  Identities=17%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             CCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcc---cceeEEEeecccCCc--CcccEEEE
Q psy9980          30 DKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTE---FHSVVAFRHTHKAAF--GCSDIYFI  100 (124)
Q Consensus        30 ~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~---~~~~~~~~~~~~~~~--~~~~~~~~  100 (124)
                      ++.++++.||...   ++|.|+. .+|.+..||++.++++||+.||.||...   ...-.+...+.....  -...+.|+
T Consensus       216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~  295 (372)
T PLN02839        216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFC  295 (372)
T ss_pred             CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEE
Confidence            4457889998433   8999984 6999999999999999999999999754   122222222221111  12335555


Q ss_pred             EEeccCCc-cCCCCcccccceeecC
Q psy9980         101 VRLKPLTQ-EITKDDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~-~~~~~~~e~~~~~W~~  124 (124)
                      |....... .+..+++|+.++.+++
T Consensus       296 YDLeLP~df~P~~qDGEVe~F~Lm~  320 (372)
T PLN02839        296 YDLELPQDFVPKNQDGEVESFKLIP  320 (372)
T ss_pred             eeeecCCccccCCCccceeEEEEec
Confidence            55544432 2355778888888764

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.83  E-value=1.1e-08  Score=61.36  Aligned_cols=54  Identities=15%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             EEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc
Q psy9980          25 AVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH   79 (124)
Q Consensus        25 ~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~   79 (124)
                      +++.+.+|++||.||...  ++|+|+||.-..+...+ .+.+.+.+.+..|+.+...
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~   57 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV   57 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-
T ss_pred             EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh
Confidence            566666689999999665  99999999988874334 5555666767888876543

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.69  E-value=3.8e-08  Score=59.13  Aligned_cols=58  Identities=29%  Similarity=0.337  Sum_probs=44.0

Q ss_pred             eeeEEEEEEc-CCC--cEEEEEecCC-----CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          20 MIGAGAVVLN-DKN--QVLVVKEFYR-----KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        20 ~~~~~~~v~~-~~~--~iLl~~r~~~-----~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      ..++.++++. ..|  .+||++--.+     ..|-|++|.|....||++..||+||+.||+||.+.
T Consensus         3 K~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd   68 (161)
T COG4119           3 KLSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD   68 (161)
T ss_pred             cccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence            3456666665 323  4555554222     35889999999999999999999999999999875

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=98.22  E-value=1.7e-05  Score=49.88  Aligned_cols=101  Identities=16%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             eEEEEEEcCCCcEEEEEecCC-----CCCCeec-cceeecCCC---CHHH----HHHHHHHHHhccCcc---cceeEEEe
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR-----KRPQWKL-PGGYVEMSE---DIGE----AAVREVFEETNIRTE---FHSVVAFR   85 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~-----~~~~w~~-PgG~~~~gE---s~~~----aa~RE~~EE~Gl~~~---~~~~~~~~   85 (124)
                      --++++.+. +++|+.+|-.+     ..|++++ .|||++.++   |..+    .+.||+.||+++.-.   ...+++..
T Consensus        63 IpYvvi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlI  141 (203)
T COG4112          63 IPYVVIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLI  141 (203)
T ss_pred             ccEEEEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeee
Confidence            345666666 59999999543     4677777 499999875   3322    478999999999843   45556554


Q ss_pred             ecccCCcCcccEEEEEEeccCCccCCCCcccccceeec
Q psy9980          86 HTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWM  123 (124)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~  123 (124)
                      ......-+..++-.++..............+.-.++|+
T Consensus       142 Ndd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwi  179 (203)
T COG4112         142 NDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWI  179 (203)
T ss_pred             cCCCcccceEEEEEEEEeeccccceeeeecceeeeeee
Confidence            33333333444555555544443333334455667776

>KOG4195|consensus

Probab=98.18  E-value=3.3e-06  Score=55.48  Aligned_cols=39  Identities=31%  Similarity=0.541  Sum_probs=34.4

Q ss_pred             cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhc
Q psy9980          33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETN   73 (124)
Q Consensus        33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~G   73 (124)
                      +++.+||.  ..+.|.+|||-+++||-.-.+.+||+.||.=
T Consensus       140 e~vavkr~--d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRP--DNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecC--CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            56777885  4799999999999999999999999999874

>KOG0142|consensus

Probab=98.06  E-value=9.6e-06  Score=52.59  Aligned_cols=106  Identities=18%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceee-------cC--CCCHHHHHHHHHHHHhccCccc-----c
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYV-------EM--SEDIGEAAVREVFEETNIRTEF-----H   79 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~-------~~--gEs~~~aa~RE~~EE~Gl~~~~-----~   79 (124)
                      .-+.+..+++++.++++||+||+..   +++.|.-- ++|.       +.  +.....||+|-+.-|+||....     .
T Consensus        50 lLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~  129 (225)
T KOG0142|consen   50 LLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF  129 (225)
T ss_pred             hhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence            3456889999998899999999655   78888632 2222       11  2357889999999999998652     3


Q ss_pred             eeEEEeecccCC---cCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          80 SVVAFRHTHKAA---FGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ++++..++....   .+.+.+.|+..... .-.+.++++|+.+++|++
T Consensus       130 ~~ltrihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs  176 (225)
T KOG0142|consen  130 NFLTRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVS  176 (225)
T ss_pred             ccceeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheec
Confidence            455544333222   22333443333332 223445668888888874

>KOG2937|consensus

Probab=97.60  E-value=8.9e-06  Score=56.39  Aligned_cols=57  Identities=30%  Similarity=0.551  Sum_probs=45.2

Q ss_pred             eeeeEEEEEEc-CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          19 TMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        19 ~~~~~~~~v~~-~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      ......+.++| ...++||++...  ...|.||-|++..+|+..+||+||+.||+|.+.+
T Consensus        81 ~iPv~ga~ild~~~sr~llv~g~q--a~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   81 RIPVRGAIILDEKRSRCLLVKGWQ--ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             CCCCchHhhhhhhhhhhheeecee--cccccccCccccccchhhhcchhcccchhhcCHH
Confidence            34455666777 334788887732  3459999999999999999999999999999886

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.46  E-value=0.0006  Score=44.21  Aligned_cols=41  Identities=29%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980          33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT   76 (124)
Q Consensus        33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~   76 (124)
                      .+||.|..   ...+.+|||.+.+||+..++.+|.+.+-+|..-
T Consensus        59 HvLLLq~~---~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   59 HVLLLQIG---NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             EEEEEEET---TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred             EEEEEecc---CccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence            68888873   458999999999999999999999999999764

...

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.95  E-value=0.0028  Score=45.22  Aligned_cols=48  Identities=15%  Similarity=0.094  Sum_probs=30.8

Q ss_pred             eeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccC
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR   75 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~   75 (124)
                      ....++++..++++|+.||...  ++|+|+||..  +. +   + ..++..|+.|+.
T Consensus       231 ~~~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~-~---~-~~~~~~~~~~~~  280 (350)
T PRK10880        231 RTGYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--AD-E---E-ELRQWLAQRGIA  280 (350)
T ss_pred             EEEEEEEEEECCEEEEEECCccChhhccccCCCC--cc-h---h-hHHHHHHhcCCc
Confidence            3444444444579999999654  9999999963  21 1   1 245566778875

>KOG4313|consensus

Probab=96.90  E-value=0.0024  Score=43.07  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=42.8

Q ss_pred             EEEEEEcCC-C--cEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          23 AGAVVLNDK-N--QVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        23 ~~~~v~~~~-~--~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      +-..+.++. +  ++.+.||+..   |+|.|+- .+|.+..|-+..++|++|..||..+...
T Consensus       136 ingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~  197 (306)
T KOG4313|consen  136 INGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSD  197 (306)
T ss_pred             eeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchh
Confidence            334455532 2  6778888433   9999984 6999999999999999999999999874

>KOG4432|consensus

Probab=96.71  E-value=0.0029  Score=43.79  Aligned_cols=70  Identities=21%  Similarity=0.370  Sum_probs=48.8

Q ss_pred             cceeeeEEEEEEcCC-CcEEEEEecCC----------------CCCCe-----------eccceeecCCCCHHHHHHHHH
Q psy9980          17 AHTMIGAGAVVLNDK-NQVLVVKEFYR----------------KRPQW-----------KLPGGYVEMSEDIGEAAVREV   68 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~-~~iLl~~r~~~----------------~~~~w-----------~~PgG~~~~gEs~~~aa~RE~   68 (124)
                      .+..-++.+++++.+ .++|++++-.+                ..-.|           ++.+|-++.+-|+.+-|..|+
T Consensus        23 ~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev  102 (405)
T KOG4432|consen   23 NQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEV  102 (405)
T ss_pred             HhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHH
Confidence            344456777777743 36777765211                11123           355899999999999999999


Q ss_pred             HHHhccCcccceeEEEee
Q psy9980          69 FEETNIRTEFHSVVAFRH   86 (124)
Q Consensus        69 ~EE~Gl~~~~~~~~~~~~   86 (124)
                      .||+|.++....+..+..
T Consensus       103 ~eecgy~v~~d~l~hv~~  120 (405)
T KOG4432|consen  103 AEECGYRVDPDDLIHVIT  120 (405)
T ss_pred             HHHhCCcCChhHceEEEE
Confidence            999999998766665543

>KOG1689|consensus

Probab=96.51  E-value=0.0087  Score=38.15  Aligned_cols=39  Identities=28%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhcc
Q psy9980          33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI   74 (124)
Q Consensus        33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl   74 (124)
                      .+||.|-   +.-.+.+|||.+++||+-.+...|-+.|-+|-
T Consensus        85 HvLLLQi---g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   85 HVLLLQI---GNTFFKLPGGRLRPGEDEADGLKRLLTESLGR  123 (221)
T ss_pred             eEEEEee---CCEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence            6788777   45678899999999999999999999999993

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=96.18  E-value=0.023  Score=39.35  Aligned_cols=30  Identities=17%  Similarity=0.014  Sum_probs=22.7

Q ss_pred             EEEEEEcCCCcEEEEEecCC--CCCCeeccce
Q psy9980          23 AGAVVLNDKNQVLVVKEFYR--KRPQWKLPGG   52 (124)
Q Consensus        23 ~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG   52 (124)
                      .++++.++++++|+.||...  ++|+|+||+.
T Consensus       230 ~~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~  261 (275)
T TIGR01084       230 YFLVLQNYDGEVLLEQRPEKGLWGGLYCFPQF  261 (275)
T ss_pred             EEEEEEeCCCeEEEEeCCCCchhhccccCCCC
Confidence            44444555689999999654  8999999974

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4548|consensus

Probab=96.07  E-value=0.039  Score=37.38  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             CcEEEEEecCCCCCCeeccceee-cCCCCHHHHHHHHHHHHhccCc
Q psy9980          32 NQVLVVKEFYRKRPQWKLPGGYV-EMSEDIGEAAVREVFEETNIRT   76 (124)
Q Consensus        32 ~~iLl~~r~~~~~~~w~~PgG~~-~~gEs~~~aa~RE~~EE~Gl~~   76 (124)
                      .-+||++|+-+..+.|.||.+.. +.+++...+|.|.|..-.|=..
T Consensus       139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~  184 (263)
T KOG4548|consen  139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK  184 (263)
T ss_pred             eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchh
Confidence            35788887655678999999999 8899999999999999888543

>KOG4432|consensus

Probab=95.34  E-value=0.17  Score=35.44  Aligned_cols=32  Identities=31%  Similarity=0.179  Sum_probs=26.5

Q ss_pred             ccceeecCCCCHHHHHHHHHHHHhccCcccce
Q psy9980          49 LPGGYVEMSEDIGEAAVREVFEETNIRTEFHS   80 (124)
Q Consensus        49 ~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~   80 (124)
                      +..|.++..-|..+-|.||..||+|.++...+
T Consensus       288 Lcag~Vd~p~s~~e~a~~e~veecGYdlp~~~  319 (405)
T KOG4432|consen  288 LCAGRVDDPFSDPEKAARESVEECGYDLPEDS  319 (405)
T ss_pred             eecccCCCCcccHHHHHHHHHHHhCCCCCHHH
Confidence            33678888788899999999999999998543

>PRK13910 DNA glycosylase MutY; Provisional

Probab=94.94  E-value=0.055  Score=37.78  Aligned_cols=31  Identities=19%  Similarity=0.064  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCcEEEEEecCC-CCCCeeccce
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGG   52 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG   52 (124)
                      ....+++.+ ++++||.||..+ ++|+|+||+.
T Consensus       187 ~~~~~~~~~-~~~~ll~kr~~~l~~gl~~fP~~  218 (289)
T PRK13910        187 ERYLGVVIQ-NNQIALEKIEQKLYLGMHHFPNL  218 (289)
T ss_pred             EEEEEEEEE-CCEEEEEECCCchhcccccCCCC
Confidence            334444444 468999998544 9999999963

>PF14443 DBC1: DBC1

Probab=93.82  E-value=0.6  Score=28.49  Aligned_cols=45  Identities=22%  Similarity=0.185  Sum_probs=33.3

Q ss_pred             cEEEEEecCC---CCCCeecc--ceeecCCC-CHHHHHHHHHHHHhccCcc
Q psy9980          33 QVLVVKEFYR---KRPQWKLP--GGYVEMSE-DIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        33 ~iLl~~r~~~---~~~~w~~P--gG~~~~gE-s~~~aa~RE~~EE~Gl~~~   77 (124)
                      ++|+.++...   -+|.|+.-  ||-...+- .+..+|+|=+++-||++++
T Consensus         9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS   59 (126)
T PF14443_consen    9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS   59 (126)
T ss_pred             eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence            4666666333   57888754  66666543 5789999999999999987

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=92.77  E-value=0.35  Score=34.52  Aligned_cols=42  Identities=21%  Similarity=0.127  Sum_probs=31.5

Q ss_pred             CCcceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecC
Q psy9980          15 NYAHTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEM   56 (124)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~   56 (124)
                      ...++....+.++.+.++.+++.+|...  +.|.|+||......
T Consensus       230 k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~  273 (342)
T COG1194         230 KKKLPRRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA  273 (342)
T ss_pred             ccccchheeeEEEEccCcchhhhhCcccCceecccccccccccc
Confidence            3344456677777777789999999655  89999999876554

>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []

Probab=88.70  E-value=0.49  Score=22.69  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=12.3

Q ss_pred             ceeecCCCCHHHHHHHHHHHHhc
Q psy9980          51 GGYVEMSEDIGEAAVREVFEETN   73 (124)
Q Consensus        51 gG~~~~gEs~~~aa~RE~~EE~G   73 (124)
                      ||-..+|--+...+.||+.||+-
T Consensus        15 ggLasPgPvp~~~alkELIeELv   37 (43)
T PF03487_consen   15 GGLASPGPVPSSTALKELIEELV   37 (43)
T ss_dssp             --------S-HHHHHHHHHHHHH
T ss_pred             cccCCCCCCCchHHHHHHHHHHH
Confidence            67777888788889999999974

It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.

>KOG2937|consensus

Probab=81.53  E-value=0.64  Score=33.00  Aligned_cols=67  Identities=22%  Similarity=0.504  Sum_probs=44.6

Q ss_pred             CCCCCCcceeeeEEEEEEc-CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          11 SRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        11 ~~~~~~~~~~~~~~~~v~~-~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      ++.+.....+.....+..+ ..+....++-...-+..|.||.|.+.-||...++++++..||+|+...
T Consensus       229 ak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~  296 (348)
T KOG2937|consen  229 AKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG  296 (348)
T ss_pred             hcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence            3444444444444444555 222233333322256788999999999999999999999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
3h95_A	199	Crystal Structure Of The Nudix Domain Of Nudt6 Leng		1e-21
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		6e-07
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		1e-06
2qjt_B	352	Crystal Structure Of A Bifunctional Nmn Adenylyltra		2e-06
3gg6_A	156	Crystal Structure Of The Nudix Domain Of Human Nudt		4e-05
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		4e-05
3dku_A	153	Crystal Structure Of Nudix Hydrolase Orf153, Ymfb,		8e-05
3o8s_A	206	Crystal Structure Of An Adp-Ribose Pyrophosphatase		4e-04
3cng_A	189	Crystal Structure Of Nudix Hydrolase From Nitrosomo		5e-04
4dyw_A	157	Crystal Structure Of Mutt Nudix Hydrolase From Burk		8e-04

>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6 Length = 199

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 17  AHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
           +H +  AGAV      ++LVV++  + +  WK PGG  E  EDIG+ AVREVFEET I++
Sbjct: 24  SHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKS 83
Query: 77  EFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           EF SV++ R  HT+  AFG SD+Y I RLKP +  I     E    +WMD
Sbjct: 84  EFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMD 133

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          +GAG VV N K +VL++++   +   W  P G+ E  E + EAAVREV+EET +R E
Sbjct: 3  LGAGGVVFNAKREVLLLRD---RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          +GAG VV N K +VL++++   +   W  P G+ E  E + EAAVREV+E+T +R E
Sbjct: 3  LGAGGVVFNAKREVLLLRD---RMGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56

>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED With Amp And Mn Ion From Francisella Tularensis Length = 352

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 14  PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETN 73
           PN+    +   A+V+ + + ++V ++ +  +  W LPGG++E  E I +A +RE+FEETN
Sbjct: 206 PNF----VTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETN 261
Query: 74  IR 75
           I 
Sbjct: 262 IN 263

>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18 Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 25  AVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
           AV L+++++VL+++E  R+ R  W LP G +E  E I EA  REV EE  +  E  ++++
Sbjct: 25  AVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLS 84
Query: 84  FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDRE 116
                    G S + F+   +P T  I K  +E
Sbjct: 85  VEER-----GPSWVRFVFLARP-TGGILKTSKE 111

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 23 AGAVVLNDKNQVLVVKE-----FYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
          AG V+LN++  +L+V+E        K   W +P G VE  E+  +AAVRE  EET +R 
Sbjct: 16 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRV 74

>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From Escherichia Coli K-1 Length = 153

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 25 AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          A V++ + + LVV+E    +  W  P G++E  E + EAA RE++EET I  +
Sbjct: 9  ACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61

>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase (Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A Resolution Length = 206

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 31  KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH-- 88
           ++++L+V+E       W LPGG+ ++ + + +  V+EV EE  +  E   VVA    H  
Sbjct: 80  EDKILLVQE---NDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKN 136
Query: 89  ---KAAFGCSDIYFIVRL 103
              K+A   + ++ + RL
Sbjct: 137 NPAKSAHRVTKVFILCRL 154

>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas Europaea Length = 189

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 31  KNQVLVVKE-FYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT---EFHSVVAFRH 86
           +N+VL+ K      R +W LP G+ E +E + + A RE  EE N R    E ++V +  H
Sbjct: 50  ENKVLLCKRAIAPYRGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYAVYSLPH 109
Query: 87  THKAAFGCSDIYFIVRLKPL 106
                   S +Y + R K L
Sbjct: 110 I-------SQVYXLFRAKLL 122

>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From Burkholderia Pseudomallei Length = 157

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 21  IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
           +G GA ++ D   +L+ ++   +   W LPGG V+  E +  A  RE+ EE  I  E  +
Sbjct: 30  VGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERAT 89
Query: 81  VVAFRHTHKAAFG 93
           ++       AA G
Sbjct: 90  LLCVVDHIDAANG 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	2e-39
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-27
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	4e-24
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	6e-24
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	9e-22
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	4e-21
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	5e-21
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	5e-19
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	1e-17
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	4e-17
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	6e-17
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	7e-17
3grn_A	153	MUTT related protein; structural genomics, hydrola	2e-16
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	2e-16
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	3e-16
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	5e-16
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	1e-15
3f13_A	163	Putative nudix hydrolase family member; structural	5e-15
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	9e-15
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	4e-14
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-13
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	1e-13
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	2e-13
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	4e-13
3exq_A	161	Nudix family hydrolase; protein structure initiati	3e-12
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	5e-12
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	5e-12
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	1e-11
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	1e-11
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	1e-11
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	5e-11
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	2e-10
2b06_A	155	MUTT/nudix family protein; structural genomics, P	3e-10
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	3e-10
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	4e-10
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	4e-10
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	3e-09
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	6e-09
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	3e-08
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	3e-08
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	9e-08
2fb1_A	226	Conserved hypothetical protein; structural genomic	1e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	1e-07
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	3e-07
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	3e-07
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	5e-07
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	6e-07
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	6e-07
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	6e-07
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	2e-06
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	2e-06
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	2e-06
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	3e-06
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	3e-06
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	6e-06
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	2e-05
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	3e-05
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	1e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	1e-04
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	5e-04
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	8e-04

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score =  130 bits (327), Expect = 2e-39
 Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 3/125 (2%)

Query: 3   KWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIG 61
             +   +E+         +G    V ++  + ++V +   K    WK PGG  E  EDIG
Sbjct: 9   SGVDLGTENLYFQSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIG 68

Query: 62  EAAVREVFEETNIRTEFHSVVAFRHTHK--AAFGCSDIYFIVRLKPLTQEITKDDREITE 119
           + AVREVFEET I++EF SV++ R  H    AFG SD+Y I RLKP +  I     E   
Sbjct: 69  DTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLR 128

Query: 120 SKWMD 124
            +WMD
Sbjct: 129 CEWMD 133

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 97.1 bits (242), Expect = 4e-27
 Identities = 23/100 (23%), Positives = 40/100 (40%)

Query: 25  AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84
           A V++ + + LVV+E    +  W  P G++E  E + EAA RE++EET I  +    +  
Sbjct: 9   ACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRM 68

Query: 85  RHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                        +               D +I   +W+ 
Sbjct: 69  HQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVS 108

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 89.1 bits (221), Expect = 4e-24
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 25  AVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
           A V+   ++ L+V+E  R    +   P G++E  E I +A  REV EET        +  
Sbjct: 12  AAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTG 71

Query: 84  FRHTHKAAFGCSDIYFIVRLKPLTQEIT-KDDREITESKWMD 124
             H   A+ G + + F    + ++ +   K D  I  + W  
Sbjct: 72  IYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFS 113

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 89.0 bits (221), Expect = 6e-24
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 16  YAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNI 74
             +      AV L+++++VL+++E  R+    W LP G +E  E I EA  REV EE  +
Sbjct: 16  RKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL 75

Query: 75  RTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKD---DREITESKWMD 124
             E  ++++           S + F+   +P    +      D E  ++ W  
Sbjct: 76  HCEPETLLSVEERGP-----SWVRFVFLARPTGGILKTSKEADAESLQAAWYP 123

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 83.3 bits (206), Expect = 9e-22
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 14  PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-----QWKLPGGYVEMSEDIGEAAVREV 68
            +    +  AG V+LN++  +L+V+E            W +P G VE  E+  +AAVRE 
Sbjct: 7   THVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREA 66

Query: 69  FEETNIRTEFHSVVA-FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            EET +R      +  +              ++   +P          EI E+ ++ 
Sbjct: 67  CEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVS 123

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 84.3 bits (208), Expect = 4e-21
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 1   MTKWLPDDSE--SRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMS 57
           + KW     E       Y   +   GA++L+    Q ++VK +      W  P G ++  
Sbjct: 80  LWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKAS-SGWGFPKGKIDKD 138

Query: 58  EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
           E   + A+REV+EET                        +Y I  +   T+  ++  +EI
Sbjct: 139 ESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEI 198

Query: 118 TESKWMD 124
           ++ +W +
Sbjct: 199 SKIEWHN 205

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 80.8 bits (200), Expect = 5e-21
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 12/107 (11%)

Query: 21  IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
           +GAG VV N K +VL+++    +   W  P G+ E  E + EAAVREV+EET +R E   
Sbjct: 3   LGAGGVVFNAKREVLLLR---DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59

Query: 81  VVA-FRHTHKAAFGCSDIYFIVR--LKPLTQEITKDDREITESKWMD 124
            +   R+ +         +F++R    P  +E       +T + W  
Sbjct: 60  PLYPTRYVNPKGVEREVHWFLMRGEGAPRLEE------GMTGAGWFS 100

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 72.5 bits (178), Expect = 1e-17
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 23  AGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
            GA + N + +++L+V+    +   W  P G +   E+  +  +REV EE       +  
Sbjct: 7   RGAAIFNENLSKILLVQG--TESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYID 64

Query: 82  VAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                          I+ I  +  +     +   EI + +W D
Sbjct: 65  DNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFD 107

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 71.5 bits (175), Expect = 4e-17
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 4   WLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSEDIGE 62
           +L  +  + +   +  ++    +V N + + L+ K   R  +  W +PGG V+  E +  
Sbjct: 3   FLRQEDFATVV-RSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEA 61

Query: 63  AAVREVFEETNIRTE---FHSVVAFRHTHKAAFGCSD-----IYFIVRLKPLTQEITKDD 114
           A  R    E  +R           ++H +   F  +D     +    R +   +E+   D
Sbjct: 62  AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPD 121

Query: 115 REITESKWMD 124
            +  + +W+ 
Sbjct: 122 EQHDDYRWLT 131

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 70.9 bits (174), Expect = 7e-17
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 11  SRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVR 66
             + +     +G GA ++ D  ++L++K   RKR      W LPGG V+  E +  A  R
Sbjct: 20  GSMQHTEQPRVGCGAAIVRD-GRILLIK---RKRAPEAGCWGLPGGKVDWLEPVERAVCR 75

Query: 67  EVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEIT-KDDREITESKW 122
           E+ EE  I  E  +++       AA G   +  +      + E    +        W
Sbjct: 76  EIEEELGIALERATLLCVVDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGW 132

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 20  MIGAGAVVLNDKNQVLVVKEFYRKRPQ---WKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
           +I   A++ N+K + L+++     R     W LPGG V   E + E   REV+EET I  
Sbjct: 8   IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITM 67

Query: 77  EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
               +    +          I F      +  ++     E  E  W+ 
Sbjct: 68  VPGDIAGQVNFELTEKKVIAIVFDGG--YVVADVKL-SYEHIEYSWVS 112

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 69.8 bits (171), Expect = 2e-16
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 20  MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
            +    +++ D  +VL+VK+    R  W LPGG VE  E + EA +RE+ EET +  +  
Sbjct: 23  QVRVTGILIED-EKVLLVKQKVANR-DWSLPGGRVENGETLEEAMIREMREETGLEVKIK 80

Query: 80  SVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            ++       A+     I F++    +  EIT    E   +   D
Sbjct: 81  KLLYVCDKPDASPSLLHITFLLER--IEGEITLPSNEFDHNPIHD 123

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 70.1 bits (172), Expect = 3e-16
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 15  NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
            Y    +   AVV  +  ++L VKE  +   +W LPGG+ ++     E A +EVFEET  
Sbjct: 63  GYQTPKVDIRAVVFQN-EKLLFVKE--KSDGKWALPGGWADVGYTPTEVAAKEVFEETGY 119

Query: 75  RTEFHSVVAF--RHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKW 122
             +   ++A   +  H+ +   + +Y I     +     K   E  E ++
Sbjct: 120 EVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEF 169

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 68.6 bits (168), Expect = 5e-16
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 22  GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
                V N+  + L+++        W  P G+VE  ED  E A+R   EE  I     ++
Sbjct: 19  CLIPKVDNNAIEFLLLQASDGIH-HWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI 77

Query: 82  VA-FRHTHKAAFGCSD---IYFIVRLKPLTQEITKDDREITESKWMD 124
           +  F+              IY++  +K    EI     E    +W+ 
Sbjct: 78  IEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLG 123

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 20/108 (18%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 21  IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE--- 77
           + A A+++ + +++LV     + + ++   GG ++++E   +A VREV EE  ++ +   
Sbjct: 20  VRATALIVQN-HKLLVT----KDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQ 74

Query: 78  -FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
               V         ++   + +++V L        ++D +    +W+D
Sbjct: 75  LAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWID 122

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 66.4 bits (162), Expect = 5e-15
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 5  LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAA 64
          L D    R+P+    +      ++   + VLV      +  ++ LPGG     E   +A 
Sbjct: 3  LEDRKNERLPS---DLARRATAIIEMPDGVLVTA---SRGGRYNLPGGKANRGELRSQAL 56

Query: 65 VREVFEETNIR---TEFHSVVAFRHTHKAAFGC 94
          +RE+ EET +R     +             + C
Sbjct: 57 IREIREETGLRINSMLYLFDHITPFNAHKVYLC 89

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 65.9 bits (161), Expect = 9e-15
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 19  TMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
           ++      ++ D +QVL+++   + R   W  PGG +E  E I E   RE +EET I  +
Sbjct: 2   SLQRVTNCIVVDHDQVLLLQ---KPRRGWWVAPGGKMEAGESILETVKREYWEETGITVK 58

Query: 78  ---FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                 + +     +       + F  +      E+ K   E  + +W  
Sbjct: 59  NPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPE-GKLEWKK 107

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 63.3 bits (154), Expect = 4e-14
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 18  HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
            T   A  +V   +N  +V+ +       + LPGG +E +E   EA  REV EE  I  E
Sbjct: 16  QTRYAAYIIVSKPENNTMVLVQ--APNGAYFLPGGEIEGTETKEEAIHREVLEELGISVE 73

Query: 78  -------FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                          H   A +     +++        E  +    +    W+ 
Sbjct: 74  IGCYLGEADEYFYSNHRQTAYYNPG-YFYVANTWRQLSEPLERTNTL---HWVA 123

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 16  YAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR 75
           Y    +   A +  +   +L           W LPGG+ ++ + + +  V+EV EE  + 
Sbjct: 66  YQTPKLDTRAAIFQEDKILL----VQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLD 121

Query: 76  TEFHSVVA-----FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKW 122
            E   VVA       +  K+A   + ++ + RL  L  E   +  E   S +
Sbjct: 122 VEAQRVVAILDKHKNNPAKSAHRVTKVFILCRL--LGGEFQPNS-ETVASGF 170

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 61.9 bits (151), Expect = 1e-13
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 15 NYAHTMIGAGAVVL----NDKNQVLVVKEFYRKRP--QWKLPGGYVEMSEDIGEAAVREV 68
          N    ++    ++      +   +++++   RK P     LPGG+VE+ E + EAA RE+
Sbjct: 4  NVKTPLLATDVIIRLWDGENFKGIVLIE---RKYPPVGLALPGGFVEVGERVEEAAAREM 60

Query: 69 FEETNIRTEFHSVVA 83
           EET +    H ++ 
Sbjct: 61 REETGLEVRLHKLMG 75

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 20  MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE-- 77
           MI    V++ +  +VL+VK   ++   +  PGG+VE +E   EA  RE  EET I  E  
Sbjct: 1   MIVTSGVLVEN-GKVLLVKH--KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57

Query: 78  --FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEI------TKDDREITESKWMD 124
              + ++      +          +   +             +   ++   +W+D
Sbjct: 58  GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWID 112

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 61.7 bits (150), Expect = 4e-13
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 25  AVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSEDIGEAAVREVFEETNIRTE---FHS 80
             +   +N+VL+ K         W LP G++E +E + + A RE  EE N R E    ++
Sbjct: 44  GCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYA 103

Query: 81  VVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           V +  H          +Y + R K L  +      E  E +   
Sbjct: 104 VYSLPHIS-------QVYMLFRAKLLDLDFFPGI-ESLEVRLFG 139

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 58.9 bits (143), Expect = 3e-12
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWK----LPGGYVEMSEDIGEAAVREVFEETN 73
            ++    V   +  +VLV     +    WK     PGG+VE+ E    AA+REVFEET 
Sbjct: 9  VELVTMVMVTDPETQRVLVED---KVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETG 65

Query: 74 IRTE 77
          +R  
Sbjct: 66 LRLS 69

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 59.7 bits (144), Expect = 5e-12
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 12  RIPNYAHTMIGAGAVVL-----NDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGE 62
            +P Y    +    V+L      D+ +VL+++   RK       W LPGG+V  +E   +
Sbjct: 31  ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQ---RKGHPFRNSWALPGGFVNRNESTED 87

Query: 63  AAVREVFEETNIRTEFHSVVAFR 85
           + +RE  EET +     ++    
Sbjct: 88  SVLRETKEETGVVISQENIEQLH 110

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 57.6 bits (140), Expect = 5e-12
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 23  AGAVVLNDKN---QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
           AG V+        + L+++  Y     W  P G+V+  ED  +AA+RE  EE NI  E  
Sbjct: 6   AGLVIYRKLAGKIEFLLLQASYPPH-HWTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 64

Query: 80  SVVAFRHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
           ++    H               Y++ +L     ++     E    KW +
Sbjct: 65  TIHEDCHETLFYEAKGKPKSVKYWLAKLNN-PDDVQ-LSHEHQNWKWCE 111

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 56.9 bits (137), Expect = 1e-11
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 13/109 (11%)

Query: 25  AVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIR-------- 75
            +      Q  V+    R     W+   G  E  E I E A RE  EE N+         
Sbjct: 13  FIKTEANYQFGVLH---RTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSL 69

Query: 76  TEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
               S+  F  +    +   +  F + L   + ++T    E +E +W+ 
Sbjct: 70  DSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVT-LSLEHSELRWVS 117

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 19/138 (13%), Positives = 54/138 (39%), Gaps = 17/138 (12%)

Query: 1   MTKWLPDDSESRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
             + L D  +    +     + + A  +N ++N+ L++         W   GG+ +  +D
Sbjct: 26  FLRCLNDFHDILTRDNTIAHLTSSAFAVNKERNKFLMIHH--NIYNSWAWTGGHSDNEKD 83

Query: 60  IGEAAVREVFEETNIRT-----------EFHSVVAF--RHTHKAAFGCSDIYFIVRLKPL 106
             + A++E+ EET ++            +  +V     R  + ++    ++ +++     
Sbjct: 84  QLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIEC-SE 142

Query: 107 TQEITKDDREITESKWMD 124
            + +   + E +   W+ 
Sbjct: 143 DETLMLKEDENSGVMWIP 160

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 3/116 (2%)

Query: 10  ESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREV 68
           ++R  +       A  +    +++  V+     + P +W +PGG +E  E+   AAVREV
Sbjct: 30  QTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREV 89

Query: 69  FEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            EE  ++     +V      +         +++ +  + ++         + +W  
Sbjct: 90  CEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFK 143

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 57.3 bits (138), Expect = 5e-11
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 2   TKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMS 57
             ++ +     +             ++   + +L+V+   RK       W LPGG++E  
Sbjct: 189 NNYVIEYKRLWLKAPFKPNFVTVDALVIVNDHILMVQ---RKAHPGKDLWALPGGFLECD 245

Query: 58  EDIGEAAVREVFEETNIRTE 77
           E I +A +RE+FEETNI   
Sbjct: 246 ETIAQAIIRELFEETNINLT 265

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 13/114 (11%)

Query: 21  IGAGAVVLNDKNQVLVVKEFYRKRP---QWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
                 ++ +    L+ K    +     QW L GG VE  E I EA  RE+ EE   +  
Sbjct: 28  RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLI 87

Query: 78  FHSVVAFRHTHKAAFGCSD---------IYFIVRLKPLTQEITKDDREITESKW 122
              +  +                     IY I       ++I  +D E  +  W
Sbjct: 88  LSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICIND-EFQDYAW 140

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 20 MIGAGAVVLNDKNQVLVVK--EFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          +     +   +  +V++        +   +  PGG+VE  E   E+ +RE++EET +  +
Sbjct: 9  LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQ 68

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 22/121 (18%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV 82
               ++   ++VL+     +K  +    GG++E++E   EA +RE  EE  +    ++ +
Sbjct: 9   VSVFIVCK-DKVLLHLH--KKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI 65

Query: 83  AFRHTHKAAFGCSDIY-------------------FIVRLKPLTQEITKDDREITESKWM 123
                         +                    F+      + E + +  E    KW 
Sbjct: 66  DINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWY 125

Query: 124 D 124
            
Sbjct: 126 S 126

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 11 SRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVR 66
           R  +   + +    +VL    +VL+     +KR     +W   GG V+  E I + A R
Sbjct: 16 PRGSHMGASRLYTLVLVLQP-QRVLLGM---KKRGFGAGRWNGFGGKVQEGETIEDGARR 71

Query: 67 EVFEETNIRTE 77
          E+ EE+ +  +
Sbjct: 72 ELQEESGLTVD 82

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 54.6 bits (131), Expect = 4e-10
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 14  PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVREVF 69
                        V+     VL+V+   R+         LPGG+++ +E + E  +RE+ 
Sbjct: 196 TAPYAPTFITTDAVVVQAGHVLMVR---RQAKPGLGLIALPGGFIKQNETLVEGMLRELK 252

Query: 70  EETNIRTEFHSVVAF 84
           EET ++     +   
Sbjct: 253 EETRLKVPLPVLRGS 267

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 33  QVLVVK--------EFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78
            +L++K        +   +  +W +PGG+V+ +E   +AA RE+ EET++    
Sbjct: 47  HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIP 100

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 51.4 bits (122), Expect = 6e-09
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 8  DSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVRE 67
           + S I N         A    D  +V +V     K   W  P G +E +E    AAVRE
Sbjct: 14 KAGSDIANDPAIASSKSAQEQLDSIEVCIVH--RPKYDDWSWPKGKLEQNETHRHAAVRE 71

Query: 68 VFEETNIRTEFHSV 81
          + EET    +    
Sbjct: 72 IGEETGSPVKLGPY 85

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 6  PDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDI 60
                 +P  +  +I     +L+  N+VL+ +   R   +     W+ PGG VE  E  
Sbjct: 15 QTQGPGSMPIKSSLLIVVACALLDQDNRVLLTQ---RPEGKSLAGLWEFPGGKVEQGETP 71

Query: 61 GEAAVREVFEETNIRT 76
            + +RE+ EE  +  
Sbjct: 72 EASLIRELEEELGVHV 87

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
          A  ++ N+ N++ + +   R          + PGG +EM E   +A VRE+ EE  I  +
Sbjct: 7  AVGIIRNENNEIFITR---RAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQ 63

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 46.5 bits (111), Expect = 9e-08
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETN 73
           ++   A +++   +VL+ +   R   +     W+ PGG +E  E    A VRE+ EE  
Sbjct: 7  ILLVTAAALIDPDGRVLLAQ---RPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELG 63

Query: 74 IRTE 77
          + T 
Sbjct: 64 VDTR 67

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 14 PNYAHTMIGAGAVVL---NDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVR 66
           +     +G   ++      +  +L++K   R       +W L GG+V+  E + +AA R
Sbjct: 7  SSNPTFYLGIDCIIFGFNEGEISLLLLK---RNFEPAMGEWSLMGGFVQKDESVDDAAKR 63

Query: 67 EVFEETNIRTEF 78
           + E T +   +
Sbjct: 64 VLAELTGLENVY 75

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQ-------WKLPGGYVEMSEDIGEAAVREVFEET 72
          MI   A ++    ++L+ +     RP        W+  GG VE  E   +A VRE+ EE 
Sbjct: 8  MIEVVAAIIERDGKILLAQ-----RPAQSDQAGLWEFAGGKVEPDESQRQALVRELREEL 62

Query: 73 NIRTE 77
           I   
Sbjct: 63 GIEAT 67

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-------WKLPGGYVEMSEDIGEAAVREVFEETNIR 75
            AV+     + L V+   R + +       ++ PGG VE  E + EA  RE+ EE +  
Sbjct: 9  VAAVIRLG-EKYLCVQ---RGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYV 64

Query: 76 TEFHSVVAFRH 86
           E    +   H
Sbjct: 65 IEVGEKLLTVH 75

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 22 GAGAVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
            G V+ N + QV+  +   R     W+ P G +   E   +A  RE+FEE  +  +
Sbjct: 10 NVGIVICNRQGQVMWAR---RFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRK 63

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 44.4 bits (106), Expect = 5e-07
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 22 GAGAVV-LNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEETNIR-- 75
           A  ++ +  + + +++++ +R        ++  G VE  ED+G AA RE+ EE      
Sbjct: 6  RAVFILPVTAQGEAVLIRQ-FRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAAS 64

Query: 76 -----TEFHSVVAF 84
                 F+   + 
Sbjct: 65 EWVPLPGFYPQPSI 78

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 22 GAGAVVLNDKNQVLVVKEFYRKRPQ--WKLPGGYVEMSEDIGEAAVREVFEETNIR 75
            G  ++N+  ++       R      W++P G ++  ED   AA+RE+ EET + 
Sbjct: 16 NVGICLMNNDKKIFAAS---RLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 22  GAGAVVLNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78
            A AV+   + ++L V++  R        ++P G +E  ED  EAA RE+ E+T +  + 
Sbjct: 35  PAVAVIALREGRMLFVRQ-MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDL 93

Query: 79  HSVVAFRHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
             + ++      + G +D    ++    LK +      D+ E  E  WM 
Sbjct: 94  TYLFSYF----VSPGFTDEKTHVFLAENLKEVEAH--PDEDEAIEVVWMR 137

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 25 AVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
          A  L    ++LV +   R         W+ PGG +E  E   EA  RE+ EE  I  E  
Sbjct: 26 AGFLRKDGKILVGQ---RPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVG 82

Query: 80 SVVAF 84
           +   
Sbjct: 83 ELKLA 87

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 14 PNYAHTMIGAGAVVL---NDKNQVLVVKEFYRKRP----QWKLPGGYVEMS--EDIGEAA 64
            +   ++   AV+    + + +VL+V+   R        W LPGG+++ +  E + +  
Sbjct: 16 KAFKAQLLTVDAVLFTYHDQQLKVLLVQ---RSNHPFLGLWGLPGGFIDETCDESLEQTV 72

Query: 65 VREVFEETNIRTEFHSVVAFRH 86
          +R++ E+T +   +   +    
Sbjct: 73 LRKLAEKTAVVPPYIEQLCTVG 94

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 5   LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIG 61
             +           T   A  +V    + +++++E Y       +     G ++  E + 
Sbjct: 33  FSNGVRRVYERMRPTNREAVMIVPIVDDHLILIRE-YAVGTESYELGFSKGLIDPGESVY 91

Query: 62  EAAVREVFEET 72
           EAA RE+ EE 
Sbjct: 92  EAANRELKEEV 102

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 22  GAGAVVLNDKNQVLVVKEFYRK---RPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTE 77
               V ++D   + +V + YR    R  W+LP G ++++ E     A RE+ EE  ++  
Sbjct: 45  AVAIVAMDDNGNIPMVYQ-YRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQAS 103

Query: 78  -FHSVVAFRHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
            +  +V        A G SD    +Y    L+ + +     +       W  
Sbjct: 104 TWQVLVDLD----TAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYP 151

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 23/116 (19%)

Query: 26  VVLNDKNQVLVVKEFYRKRPQ--WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV- 82
           +   D  +VL+++   R+     W+   G VE  E   +AA+REV EE  I      +  
Sbjct: 16  IYAQDTKRVLMLQ---RRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTL 72

Query: 83  -------------AFRHTH-KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                          RH +       ++ +F + L P  ++I     E    KW+D
Sbjct: 73  IDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLAL-PHERQIVF--TEHLAYKWLD 125

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 15/108 (13%)

Query: 26  VVLNDKNQVLVVKEFYRKRPQWKL--PG-------GYVEMSEDIGEAAVREVFEETNIRT 76
            + N + Q+ +      +R   K   P        G V+  E   EA  RE  EE N+  
Sbjct: 40  FLRNSQGQLWI-----PRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI 94

Query: 77  EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           +  S              S    +  L+        +  +I+  +W+ 
Sbjct: 95  DALSWRPLASFSPFQTTLSSFMCVYELR-SDATPIFNPNDISGGEWLT 141

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 22 GAGAVV-LNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEET 72
           A  V+ + ++   L+V++ YR    +   ++P G V+  E    AA RE+ EE 
Sbjct: 42 AASFVLPVTERGTALLVRQ-YRHPTGKFLLEVPAGKVDEGETPEAAARRELREEV 95

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 16/77 (20%)

Query: 14  PNYAHTMI-------GAGAVVLNDKN-----QVLVVKEFYRKRP-QWKLPGGYVEMSEDI 60
           PN+A   I        +G  +++  +     Q + +K   RK   +W +PGG V+  E I
Sbjct: 109 PNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIK---RKDCGEWAIPGGMVDPGEKI 165

Query: 61  GEAAVREVFEETNIRTE 77
                RE  EE     +
Sbjct: 166 SATLKREFGEEALNSLQ 182

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 26  VVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT---EFHSVV 82
           V +   + +L+ +    +     +  G+VE+ E + +A  REV EE+ I+     + +  
Sbjct: 145 VAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQ 204

Query: 83  AFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            +             Y        + +I  D +E+ E+ W  
Sbjct: 205 PWPFPQSLMTAFMAEY-------DSGDIVIDPKELLEANWYR 239

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 25/114 (21%)

Query: 27  VLNDKNQVLVVKEFYRKRPQWKL--PG-------GYVEMSEDIGEAAVREVFEETNIRTE 77
           + N K Q+LV      +R   K   PG       G+ ++ E   +A +R    E  +   
Sbjct: 39  LFNAKGQLLV-----TRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEIT 93

Query: 78  FHSVVAFRHTHKAAFGC-------SDIYFIVRLKPLTQEITKDDREITESKWMD 124
               +     ++A             ++       L      +D E+ + +W D
Sbjct: 94  PPESIYPDFRYRATDPSGIVENEVCPVFAARTTSAL----QINDDEVMDYQWCD 143

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 46  QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY-FIVRLK 104
           Q   PGG ++  E   +AA+RE  EE  +     +++          G   +   + R+ 
Sbjct: 65  QIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVG-FHVTPVLGRIA 123

Query: 105 PLTQEITKDDREITE 119
           P   +  +   E+ +
Sbjct: 124 PEALDTLRVTPEVAQ 138

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 29  NDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEET 72
                +++VK+ +R        + P G ++  E    AA+RE+ EET
Sbjct: 74  LHYECIVLVKQ-FRPPMGGYCIEFPAGLIDDGETPEAAALRELEEET 119

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 23/111 (20%)

Query: 26  VVLNDKNQVLVVKEFYRKRPQWKLP---------GGYVEMSEDIGEAAVREVFEETNIRT 76
           VV +   ++LV     ++R + K           GG V+  E + E+A RE  EE  I  
Sbjct: 43  VVHDGMGKILV-----QRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAG 97

Query: 77  ---EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                H    F   +   +G   ++  V   P        + E++E  W+ 
Sbjct: 98  VPFAEHGQFYFEDKNCRVWG--ALFSCVSHGPF----ALQEDEVSEVCWLT 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.92
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.91
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.9
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.9
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.9
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.9
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.9
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.9
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.89
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.89
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.89
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.89
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.89
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.89
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.88
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.88
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.88
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.88
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.88
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.88
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.88
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.87
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.87
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.87
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.87
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.87
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.87
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.87
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.87
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.87
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.87
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.87
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.86
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.86
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.86
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.86
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.86
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.85
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.85
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.85
3f13_A	163	Putative nudix hydrolase family member; structural	99.85
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.85
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.85
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.84
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.84
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.84
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.84
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.84
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.84
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.83
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.83
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.83
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.83
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.82
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.82
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.82
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.81
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.81
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.81
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.8
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.8
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.8
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.8
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.79
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.79
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.77
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.77
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.76
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.73
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.73
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.67
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.62
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.62
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.6
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.42
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.37
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.35

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.92  E-value=2e-24  Score=135.67  Aligned_cols=118  Identities=20%  Similarity=0.313  Sum_probs=81.6

Q ss_pred             CCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980           6 PDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF   84 (124)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~   84 (124)
                      ++..+..+....++++++.+++++ ++++||++|... ..+.|.||||++++||++.+||+||+.||||+++....++..
T Consensus        15 ~~~~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   93 (157)
T 4dyw_A           15 QTQGPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV   93 (157)
T ss_dssp             -----------CCCEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEE
T ss_pred             cCCCCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence            445556666667788889999998 489999999644 689999999999999999999999999999999987777776


Q ss_pred             eecccCCcCcccEEEEEEeccCCccCCC-CcccccceeecC
Q psy9980          85 RHTHKAAFGCSDIYFIVRLKPLTQEITK-DDREITESKWMD  124 (124)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~  124 (124)
                      ............+.++|.+....+.+.. .++|+.+++|++
T Consensus        94 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~  134 (157)
T 4dyw_A           94 VDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFA  134 (157)
T ss_dssp             EEEEETTTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEE
T ss_pred             EEeeccCCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEEC
Confidence            5544332333334455555444333332 457889999985

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.91  E-value=2.7e-24  Score=132.05  Aligned_cols=101  Identities=28%  Similarity=0.372  Sum_probs=72.5

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc--cc
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC--SD   96 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~--~~   96 (124)
                      ..++++++|+++ |++||++|+   .|.|.||||++++|||+.+||+||++||||+++....++....+.....+.  ..
T Consensus         3 ~~~aag~vv~~~-~~vLL~~r~---~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~   78 (134)
T 3i7u_A            3 KEFSAGGVLFKD-GEVLLIKTP---SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFK   78 (134)
T ss_dssp             EEEEEEEEEEET-TEEEEEECT---TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred             cEEEEEEEEEEC-CEEEEEEeC---CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEE
Confidence            456788888876 799999983   589999999999999999999999999999998876666654322222221  12


Q ss_pred             EEEEEEeccCCccCCCCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..++|.+....+.+.+ ++|+.+++|++
T Consensus        79 ~~~~f~~~~~~~~~~~-~~E~~~~~W~~  105 (134)
T 3i7u_A           79 TVKYYLMKYKEGEPRP-SWEVKDAKFFP  105 (134)
T ss_dssp             EEEEEEEEEEEECCCC-CTTSSEEEEEE
T ss_pred             EEEEEEEEEcCCcCcC-ChhheEEEEEE
Confidence            2233444444444443 47889999985

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.90  E-value=3.7e-23  Score=130.36  Aligned_cols=108  Identities=21%  Similarity=0.252  Sum_probs=81.2

Q ss_pred             CCcceeeeEEEEEEcCC-CcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc
Q psy9980          15 NYAHTMIGAGAVVLNDK-NQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF   92 (124)
Q Consensus        15 ~~~~~~~~~~~~v~~~~-~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~   92 (124)
                      ...++..++.+++.+++ +++||++|... +.|.|.||||++++|||+++||+||+.||||+++....++..........
T Consensus         5 r~~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   84 (161)
T 3exq_A            5 RTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDR   84 (161)
T ss_dssp             SCCCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSC
T ss_pred             ccCCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCC
Confidence            34566778888888865 69999999654 78889999999999999999999999999999998777777665443233


Q ss_pred             CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          93 GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....+.++|.+....+.  +...|..+++|++
T Consensus        85 ~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~  114 (161)
T 3exq_A           85 QHRKLGLLYRASNFTGT--LKASAEGQLSWLP  114 (161)
T ss_dssp             SSEEEEEEEEECCEESC--CCGGGTTTEEEEC
T ss_pred             CeEEEEEEEEEeccCCc--cCCCccceEEEee
Confidence            33345555555544433  3356778899986

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.90  E-value=1.4e-22  Score=127.17  Aligned_cols=108  Identities=18%  Similarity=0.295  Sum_probs=78.3

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc--cceeEEEeecc-cCC-
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE--FHSVVAFRHTH-KAA-   91 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~~-~~~-   91 (124)
                      .++.+++.+++++.++++||++|... ++|.|+||||++++||++.+||+||+.||||+++.  ...++....+. ... 
T Consensus        15 ~~~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   94 (160)
T 1rya_A           15 STPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF   94 (160)
T ss_dssp             HSCEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT
T ss_pred             CCcEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccc
Confidence            34567888899987789999999654 68999999999999999999999999999999964  44555544322 111 


Q ss_pred             c----CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          92 F----GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        92 ~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .    ....+.++|.+....+.+..+++|+.+++|++
T Consensus        95 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~  131 (160)
T 1rya_A           95 SGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLT  131 (160)
T ss_dssp             TBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEEC
T ss_pred             cCCCcCcEEEEEEEEEEcCccccccCCCccceEEEec
Confidence            0    11334455555544445555667889999986

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.90  E-value=5.4e-23  Score=133.75  Aligned_cols=110  Identities=42%  Similarity=0.750  Sum_probs=78.0

Q ss_pred             CCcceeeeEEEEEEc-CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--
Q psy9980          15 NYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA--   91 (124)
Q Consensus        15 ~~~~~~~~~~~~v~~-~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--   91 (124)
                      ...++.+++++++++ .++++||++|+.+..|.|.||||++++||++++||+||+.||||+++....++.+...+...  
T Consensus        21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~  100 (199)
T 3h95_A           21 QSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGA  100 (199)
T ss_dssp             -----CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-----
T ss_pred             ccCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCC
Confidence            355677788777777 45799999997656899999999999999999999999999999999877777754333222  


Q ss_pred             cCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          92 FGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .....+++++...........+++|+.+++|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~  133 (199)
T 3h95_A          101 FGKSDMYIICRLKPYSFTINFCQEECLRCEWMD  133 (199)
T ss_dssp             ----CEEEEEEEEESCCCCCCCTTTEEEEEEEE
T ss_pred             ceeEEEEEEEEEcCCCcccCCCccceeeeEEEe
Confidence            222345555555544445555678999999985

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.90  E-value=2.2e-22  Score=125.64  Aligned_cols=105  Identities=23%  Similarity=0.334  Sum_probs=79.1

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG   93 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   93 (124)
                      .+...++++++++.++++||++|...   ++|.|.||||++++||++.+||+||+.||||+.+....++........  .
T Consensus         5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~--~   82 (153)
T 3grn_A            5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELT--E   82 (153)
T ss_dssp             SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECS--S
T ss_pred             CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecC--C
Confidence            34677888899987789999999642   689999999999999999999999999999999987777766542221  2


Q ss_pred             cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .....++|.+....+.+.. .+|..+++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~  112 (153)
T 3grn_A           83 KKVIAIVFDGGYVVADVKL-SYEHIEYSWVS  112 (153)
T ss_dssp             CEEEEEEEEEEECCCCCCC-CTTEEEEEEEC
T ss_pred             ceEEEEEEEEEecCCcEec-CCCcceEEEEE
Confidence            2234445555444444433 47888999985

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.90  E-value=1.2e-22  Score=126.67  Aligned_cols=105  Identities=23%  Similarity=0.369  Sum_probs=77.9

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      ++++++++++.++ +++||++|....++.|.+|||++++|||+++||+||+.||||+++....++....... ......+
T Consensus         3 ~p~~~v~~ii~~~-~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-~~~~~~~   80 (153)
T 3shd_A            3 KPHVTVACVVHAE-GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIA-PDKTPFL   80 (153)
T ss_dssp             CCEEEEEEEEEET-TEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-TTSCCEE
T ss_pred             CCceEEEEEEEeC-CEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEec-CCCceEE
Confidence            4566777777664 7999999964467899999999999999999999999999999998877777653322 2233344


Q ss_pred             EEEEEeccCCcc-CCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQE-ITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~-~~~~~~e~~~~~W~~  124 (124)
                      .++|.+...... ....++|+.+++|++
T Consensus        81 ~~~f~~~~~~~~~~~~~~~E~~~~~W~~  108 (153)
T 3shd_A           81 RFLFAIELEQICPTQPHDSDIDCCRWVS  108 (153)
T ss_dssp             EEEEEEECSSCCCCCCCSTTCCEEEEEC
T ss_pred             EEEEEEEccccCcCCCCcccceeeEEec
Confidence            445555444332 345678899999986

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.90  E-value=2.6e-22  Score=125.80  Aligned_cols=108  Identities=27%  Similarity=0.354  Sum_probs=79.6

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecC----C-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFY----R-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA   90 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~----~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~   90 (124)
                      ....+.++++++++.++++||++|..    . .+|.|+||||++++||++.+||+||+.||||+++....++....+. .
T Consensus         9 ~~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~-~   87 (159)
T 1sjy_A            9 VPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR-F   87 (159)
T ss_dssp             CCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEE-C
T ss_pred             CCeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecc-c
Confidence            34556778888888778999999963    2 6799999999999999999999999999999999877666655432 1


Q ss_pred             CcCcccEEEEEEeccCCcc-CCC-CcccccceeecC
Q psy9980          91 AFGCSDIYFIVRLKPLTQE-ITK-DDREITESKWMD  124 (124)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~-~~~e~~~~~W~~  124 (124)
                      ..+.....++|.+....+. +.. .++|+.++.|++
T Consensus        88 ~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~  123 (159)
T 1sjy_A           88 PDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVS  123 (159)
T ss_dssp             TTSCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEEC
T ss_pred             CCCceEEEEEEEEEccCCCccccCCCCceeEEEEec
Confidence            2223334445555444433 444 567889999986

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.89  E-value=1.9e-22  Score=124.55  Aligned_cols=106  Identities=18%  Similarity=0.251  Sum_probs=74.3

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      .+....+++++++.++++||++|...  ++|.|.||||++++||++.+||+||+.||||+.+....+..+..........
T Consensus         5 ~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   84 (144)
T 3r03_A            5 LPILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTF   84 (144)
T ss_dssp             -CEEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSS
T ss_pred             CceeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCe
Confidence            44556677777887789999999644  7899999999999999999999999999999998866444332111111222


Q ss_pred             ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....++|.+....+.  ....|..+++|++
T Consensus        85 ~~~~~~~~~~~~~~~--~~~~e~~~~~W~~  112 (144)
T 3r03_A           85 HLLMPLYACRSWRGR--ATAREGQTLAWVR  112 (144)
T ss_dssp             EEEEEEEEECCCBSC--CCCCSSCEEEEEC
T ss_pred             EEEEEEEEEEecCCc--cCCCCcceEEEEe
Confidence            334445555444332  3356778899985

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.89  E-value=1.6e-22  Score=126.92  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=74.2

Q ss_pred             CCCCCcceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980          12 RIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK   89 (124)
Q Consensus        12 ~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~   89 (124)
                      +++...+....+++++++.++++||++|...  ++|.|.||||++++||++.+||+||+.||||+.+....+..+.....
T Consensus        21 ~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~  100 (158)
T 3hhj_A           21 SMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASH  100 (158)
T ss_dssp             ------CEEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEE
T ss_pred             cCCCCCceEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEee
Confidence            4444455666777778887789999999643  78999999999999999999999999999999988665433321111


Q ss_pred             CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .........++|.+....+  .....|..+++|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~W~~  133 (158)
T 3hhj_A          101 GYETFHLLMPLYFCSHYKG--VAQGREGQNLKWIF  133 (158)
T ss_dssp             ECSSCEEEEEEEEESCCBS--CCCCTTSCEEEEEE
T ss_pred             ccCCcEEEEEEEEEEECCC--ccCCccccceEEEc
Confidence            1122233444455544333  23356778899974

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.89  E-value=8.3e-23  Score=135.32  Aligned_cols=112  Identities=16%  Similarity=0.269  Sum_probs=79.8

Q ss_pred             CCCCcceeeeEEEEEE---cCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc
Q psy9980          13 IPNYAHTMIGAGAVVL---NDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH   88 (124)
Q Consensus        13 ~~~~~~~~~~~~~~v~---~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~   88 (124)
                      ++.+.++.+++.++|+   ++++++||++|... ..|.|.+|||++++|||+++||+||+.||||+++.....+......
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~   85 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI   85 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence            4456777888888888   55679999999654 6799999999999999999999999999999998866656554332


Q ss_pred             cCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          89 KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ........+.+.|.+..........++|+.++.|++
T Consensus        86 ~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~  121 (226)
T 2fb1_A           86 DRDPGERVVSIAYYALININEYDRELVQKHNAYWVN  121 (226)
T ss_dssp             TSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEE
T ss_pred             CcCCCceEEEEEEEEEecCcccccCCccccceEEEE
Confidence            222222334434444433333223456788999985

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.89  E-value=3e-22  Score=123.17  Aligned_cols=106  Identities=19%  Similarity=0.291  Sum_probs=74.3

Q ss_pred             CcceeeeEEEEEEc--CCCc--EEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980          16 YAHTMIGAGAVVLN--DKNQ--VLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA   91 (124)
Q Consensus        16 ~~~~~~~~~~~v~~--~~~~--iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~   91 (124)
                      +..+.+++.+++++  ++++  +||++|+.. ++.|+||||++++|||+++||+||+.||||+++....++.........
T Consensus         5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   83 (139)
T 2yyh_A            5 VKTPLLATDVIIRLWDGENFKGIVLIERKYP-PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERD   83 (139)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEECSS-SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSC
T ss_pred             ccCCeEEEEEEEEEEcCCCcEEEEEEEecCC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcC
Confidence            45566777777776  5677  999998643 344999999999999999999999999999998877777665432222


Q ss_pred             cCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          92 FGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .....+.++|.+.. .+.+. .++|+.+++|++
T Consensus        84 ~~~~~~~~~f~~~~-~~~~~-~~~e~~~~~W~~  114 (139)
T 2yyh_A           84 PRAHVVSVVWIGDA-QGEPK-AGSDAKKVKVYR  114 (139)
T ss_dssp             TTSCEEEEEEEEEE-ESCCC-CCTTEEEEEEEC
T ss_pred             CCceEEEEEEEEec-CCccC-CCCCcceEEEEE
Confidence            12223344444443 23333 467888999986

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=126.73  Aligned_cols=104  Identities=28%  Similarity=0.391  Sum_probs=75.7

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      .......+++++++.++++||++|... +.|.|+||||++++|||+++||+||++||||+++....++......   .  
T Consensus        16 ~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~--   90 (156)
T 3gg6_A           16 RKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---P--   90 (156)
T ss_dssp             CTTCEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---T--
T ss_pred             CCceEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---C--
Confidence            345556677788887789999999654 6899999999999999999999999999999999877777765321   1  


Q ss_pred             ccEEEEEEeccCCccCC---CCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEIT---KDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~---~~~~e~~~~~W~~  124 (124)
                      ..+.++|.+....+.+.   .+.+|+.+++|++
T Consensus        91 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~  123 (156)
T 3gg6_A           91 SWVRFVFLARPTGGILKTSKEADAESLQAAWYP  123 (156)
T ss_dssp             TEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEE
T ss_pred             CEEEEEEEEEeeCCeeccCCCCCcceeeeEEEc
Confidence            12333333332222222   2447888999985

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.88  E-value=6.1e-22  Score=124.05  Aligned_cols=101  Identities=25%  Similarity=0.368  Sum_probs=67.7

Q ss_pred             eEEEEEE---------cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc-cC-
Q psy9980          22 GAGAVVL---------NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH-KA-   90 (124)
Q Consensus        22 ~~~~~v~---------~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~-~~-   90 (124)
                      ++.++++         +++.++||+||++ ..+.|.||||++++|||+.+||+||++||||+++....++...... .. 
T Consensus         5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~-~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   83 (155)
T 3u53_A            5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYV   83 (155)
T ss_dssp             EEEEEEEEECCCSSSSSCSEEEEEEEESS-SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEE
T ss_pred             EeEEEEEccccccceeCCCcEEEEEEecC-CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecC
Confidence            5566666         3455899999965 4688999999999999999999999999999998866555433211 11 


Q ss_pred             CcCccc--EEEEEEeccCCccCCCCcccccceeecC
Q psy9980          91 AFGCSD--IYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        91 ~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ......  .++++........+. .++|+.+++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~  118 (155)
T 3u53_A           84 ARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLG  118 (155)
T ss_dssp             ETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEEC
T ss_pred             CCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeE
Confidence            111122  223333333222322 457899999986

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.88  E-value=5.5e-22  Score=124.62  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=74.8

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee------------
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH------------   86 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~------------   86 (124)
                      ...++++++++ ++++||++|+.  .|.|.+|||++++|||+++||+||++||||+++....++.+..            
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   81 (159)
T 3f6a_A            5 RHFTVSVFIVC-KDKVLLHLHKK--AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLL   81 (159)
T ss_dssp             SCEEEEEEEEE-TTEEEEEECSS--SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEE
T ss_pred             ceEEEEEEEEE-CCEEEEEEcCC--CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccccc
Confidence            35677777777 47999999963  6899999999999999999999999999999987655553210            


Q ss_pred             -------cccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          87 -------THKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        87 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                             ..........+.++|.+....+.+..+++|..+++|++
T Consensus        82 ~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~  126 (159)
T 3f6a_A           82 INPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYS  126 (159)
T ss_dssp             CCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEEC
T ss_pred             cCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEee
Confidence                   00111222344455666655555555678999999986

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.88  E-value=3.3e-22  Score=124.57  Aligned_cols=106  Identities=25%  Similarity=0.304  Sum_probs=73.4

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCCC-CCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCccc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSD   96 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~~-~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   96 (124)
                      +++.++.+++.++ +++||++|.... ++.|.||||++++||++.+||+||+.||||+++....++..............
T Consensus         6 ~~~~~v~~ii~~~-~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (153)
T 2b0v_A            6 KPNVTVAAVIEQD-DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY   84 (153)
T ss_dssp             CCEEEEEEECEET-TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             cCCEEEEEEEeeC-CEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEE
Confidence            4456666666654 799999996544 78999999999999999999999999999999887777665532211112223


Q ss_pred             EEEEEEeccCCccC-CCCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQEI-TKDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~~-~~~~~e~~~~~W~~  124 (124)
                      +.++|.+....... ....+|+.++.|++
T Consensus        85 ~~~~f~~~~~~~~~~~~~~~e~~~~~W~~  113 (153)
T 2b0v_A           85 LRFTFSGQVVSFDPDRKLDTGIVRAAWFS  113 (153)
T ss_dssp             EEEEEEEEEEEECTTSCCCTTEEEEEEEE
T ss_pred             EEEEEEEEeCCCCCCCCCCCCeeeEEEec
Confidence            33444443333222 33467888999985

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.88  E-value=7.8e-22  Score=124.56  Aligned_cols=106  Identities=24%  Similarity=0.287  Sum_probs=69.4

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee-----ccc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH-----THK   89 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~-----~~~   89 (124)
                      .....+++++++.++++||++|+..   ++|.|++|||++++||++++||+||+.||||+++....+..+..     .+.
T Consensus        25 ~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  104 (165)
T 3oga_A           25 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKT  104 (165)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEE
T ss_pred             cceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEe
Confidence            3344455555555589999999643   57999999999999999999999999999999988665554321     111


Q ss_pred             CCcCc----ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          90 AAFGC----SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .....    ..+++++.+....+.+.. ++|+.+++|++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~  142 (165)
T 3oga_A          105 YADGRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVK  142 (165)
T ss_dssp             C--CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEEC
T ss_pred             cCCCCceeEEEEEEEEEeeccCCCccC-CchheeeEEcc
Confidence            11111    123344445444444333 47888999985

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.88  E-value=7.1e-22  Score=125.39  Aligned_cols=104  Identities=18%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      ..++++++++.++++||++|...   ++|.|+ +|||++++|||+.+||+||++||||+++....+..+.....+.....
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~  113 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS  113 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence            56777888887789999998543   589998 99999999999999999999999999988644333322221222222


Q ss_pred             cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ...++|.+.. .+.+..+++|+.+++|++
T Consensus       114 ~~~~~f~~~~-~~~~~~~~~E~~~~~W~~  141 (171)
T 1q27_A          114 SFMCVYELRS-DATPIFNPNDISGGEWLT  141 (171)
T ss_dssp             SEEEEEEEEC-CCCCCSCTTTCSCCEEEC
T ss_pred             cEEEEEEEEE-CCccccCchhhheEEEec
Confidence            3555555544 444555667889999986

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.88  E-value=8.1e-22  Score=119.18  Aligned_cols=99  Identities=29%  Similarity=0.388  Sum_probs=71.2

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF   99 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   99 (124)
                      .+++++++++.++++||+||+.   |.|+||||++++|||+.+||+||+.||||+++....++....+...  .......
T Consensus         2 ~~~~~~vi~~~~~~vLl~~r~~---g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~~~   76 (126)
T 1vcd_A            2 ELGAGGVVFNAKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNP--KGVEREV   76 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECTT---SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECT--TSCEEEE
T ss_pred             eeEEEEEEEcCCCEEEEEEECC---CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecC--CceEEEE
Confidence            3578889998778999999953   8999999999999999999999999999999887666665432221  1222223


Q ss_pred             EEEeccCCccCCCCcccccceeecC
Q psy9980         100 IVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +|.+....+. ....+|+.+++|++
T Consensus        77 ~~~~~~~~~~-~~~~~e~~~~~w~~  100 (126)
T 1vcd_A           77 HWFLMRGEGA-PRLEEGMTGAGWFS  100 (126)
T ss_dssp             EEEEEEEESC-CCCCTTCCEEEEEC
T ss_pred             EEEEEEcCCC-CCCCcceeeeEEcC
Confidence            3333222222 23457788999986

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.88  E-value=8.5e-23  Score=130.95  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      ....++.+++++.++++||++|...  .+|.|+||||++++|||+++||+||+.||||+++....++......  .....
T Consensus        39 ~~~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~--~~~~~  116 (182)
T 2yvp_A           39 GPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQ--PSFTA  116 (182)
T ss_dssp             SSCEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSC--TTTBC
T ss_pred             ecCCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCC--CCccc
Confidence            3345778888887789999998533  5789999999999999999999999999999998765555433221  11122


Q ss_pred             cEEEEEEeccC--CccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPL--TQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~  124 (124)
                      ...++|.+...  ...+..+++|+.++.|++
T Consensus       117 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~  147 (182)
T 2yvp_A          117 VVFHPFLALKARVVTPPTLEEGELLESLELP  147 (182)
T ss_dssp             CEEEEEEECSCEECSCCCCCTTCCEEEEEEE
T ss_pred             cEEEEEEEeccccCCCCCCCCCceEEEEEEE
Confidence            34444444322  233444677889999985

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.87  E-value=1.2e-21  Score=125.23  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=71.8

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      ..++.++.+++ +.++++||++|+.. +.|.|.||||++++||++++||+||+.||||+++....++.............
T Consensus        22 ~~~~~~~~~vi-~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  100 (176)
T 3q93_A           22 GASRLYTLVLV-LQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL  100 (176)
T ss_dssp             -CEEEEEEEEE-ECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred             CCCcEEEEEEE-EeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence            34444444444 44589999998554 78999999999999999999999999999999998777776654332222223


Q ss_pred             cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ...++|.+....+.+  ...|..+++|++
T Consensus       101 ~~~~~f~~~~~~~~~--~~~e~~~~~W~~  127 (176)
T 3q93_A          101 MDVHVFCTDSIQGTP--VESDEMRPCWFQ  127 (176)
T ss_dssp             EEEEEEEESCEESCC--CCCSSEEEEEEE
T ss_pred             EEEEEEEEECCCCCc--CCCcceeeEEee
Confidence            344555554433333  234566778874

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.87  E-value=1.6e-22  Score=125.45  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             eeeEEEEEEcCCCcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      ..++.+++++.++++||+++ +.. .++.|+||||++++|||+++||+||++||||+++.....+.....  ........
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~--~~~~~~~~   82 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYP--QPSISGVV   82 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBS--CTTTCCCE
T ss_pred             CCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcC--CCCccCce
Confidence            45777888887789988765 333 456999999999999999999999999999998865444432211  11111122


Q ss_pred             EEEEEecc-CCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKP-LTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~-~~~~~~~~~~e~~~~~W~~  124 (124)
                      .++|.+.. ..+....+++|+.+++|++
T Consensus        83 ~~~f~~~~~~~~~~~~~~~E~~~~~w~~  110 (145)
T 2w4e_A           83 FYPLLALGVTLGAAQLEDTETIERVVLP  110 (145)
T ss_dssp             EEEEEEEEEEEC--------CEEEEEEE
T ss_pred             EEEEEEEecccCCCCCCCCCeEEEEEEe
Confidence            22333321 1223344667889999985

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.87  E-value=2.1e-21  Score=119.56  Aligned_cols=101  Identities=22%  Similarity=0.268  Sum_probs=70.2

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC----CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR----KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~----~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      +...+++++.+ ++++||++|...    ++|.|.||||++++||++++||+||+.||||+++....++........  ..
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~--~~   81 (140)
T 3gwy_A            5 SIEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYP--DF   81 (140)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCS--SC
T ss_pred             EEEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeC--Cc
Confidence            34455666666 589999999543    578999999999999999999999999999999987777766433222  22


Q ss_pred             ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....++|.+....+.+  ..+|..+++|++
T Consensus        82 ~~~~~~f~~~~~~~~~--~~~E~~~~~W~~  109 (140)
T 3gwy_A           82 EITMHAFLCHPVGQRY--VLKEHIAAQWLS  109 (140)
T ss_dssp             CEEEEEEEEEECCSCC--CCCSSCEEEEEC
T ss_pred             eEEEEEEEEEecCCcc--cccccceeEecc
Confidence            2344455554444332  346788999985

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.87  E-value=2e-21  Score=125.41  Aligned_cols=104  Identities=28%  Similarity=0.435  Sum_probs=76.7

Q ss_pred             CCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980          15 NYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG   93 (124)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   93 (124)
                      .+..+.+++.+++.+ ++++||++|... ..+.|.||||++++|||+++||+||++||||+++....++.+....    .
T Consensus        35 ~~~~~~~~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~----~  109 (189)
T 3cng_A           35 HYQNPKVIVGCIPEW-ENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP----H  109 (189)
T ss_dssp             ECCCCEEEEEEEEEE-TTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEG----G
T ss_pred             cCCCCceEEEEEEEe-CCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEecC----C
Confidence            345566788888888 579999999654 5789999999999999999999999999999998877666654321    1


Q ss_pred             cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ...+.++|.+......+. ..+|..+++|++
T Consensus       110 ~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~  139 (189)
T 3cng_A          110 ISQVYMLFRAKLLDLDFF-PGIESLEVRLFG  139 (189)
T ss_dssp             GTEEEEEEEEEECCSCCC-CCTTEEEEEEEC
T ss_pred             CcEEEEEEEEEeCCCccC-CCccceeEEEEC
Confidence            223444455444433333 367888999985

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.87  E-value=2.7e-21  Score=120.12  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=68.2

Q ss_pred             eeEEEEEE---cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEee----cccCC
Q psy9980          21 IGAGAVVL---NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRH----THKAA   91 (124)
Q Consensus        21 ~~~~~~v~---~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~----~~~~~   91 (124)
                      .++.++++   ++++++||++|..  .|.|.+|||++++|||+.+||+||++||||+++...  .+..+..    .+.+.
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   83 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFN   83 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS--SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSS
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC--CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccC
Confidence            45555554   4557899999964  499999999999999999999999999999998753  2222211    11111


Q ss_pred             cCcccEEEEEEeccC--CccCCCCcccccceeecC
Q psy9980          92 FGCSDIYFIVRLKPL--TQEITKDDREITESKWMD  124 (124)
Q Consensus        92 ~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~  124 (124)
                      .......++|.+...  .+.+.. ++|+.+++|++
T Consensus        84 ~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~  117 (149)
T 3son_A           84 KPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVS  117 (149)
T ss_dssp             SCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEEC
T ss_pred             CceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeC
Confidence            212233344544444  344444 58899999986

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.87  E-value=6.3e-22  Score=133.93  Aligned_cols=112  Identities=20%  Similarity=0.263  Sum_probs=82.3

Q ss_pred             CCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec
Q psy9980           8 DSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT   87 (124)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~   87 (124)
                      +..|....++++..++.+++.++ +++||++|+....|.|++|||++++|||+++||+||++||||+++....++.....
T Consensus       128 C~~C~~~~yp~~~~~viv~v~~~-~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~  206 (269)
T 1vk6_A          128 CSHCRERYYPQIAPCIIVAIRRD-DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW  206 (269)
T ss_dssp             ESSSSCEECCCCEEEEEEEEEET-TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred             CCCCCCEecCCCCcEEEEEEEeC-CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence            44566666777777666666665 79999999644579999999999999999999999999999999987766665432


Q ss_pred             ccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          88 HKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      . .  . ..++++|.+....+.+..+++|..+++|++
T Consensus       207 ~-~--~-~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~  239 (269)
T 1vk6_A          207 P-F--P-QSLMTAFMAEYDSGDIVIDPKELLEANWYR  239 (269)
T ss_dssp             E-T--T-EEEEEEEEEEEEECCCCCCTTTEEEEEEEE
T ss_pred             C-C--C-CEEEEEEEEEECCCCcCCCCcceEEEEEEE
Confidence            1 1  1 224444554444445555677899999985

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.87  E-value=1.8e-21  Score=119.31  Aligned_cols=104  Identities=26%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             eeeEEEEEEcC---CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeE-EEeecccCCc-Cc
Q psy9980          20 MIGAGAVVLND---KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV-AFRHTHKAAF-GC   94 (124)
Q Consensus        20 ~~~~~~~v~~~---~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~-~~~~~~~~~~-~~   94 (124)
                      ..++.+++++.   ++++||++|+. .+|.|.+|||++++|||+++||+||+.||||+++....+. .......+.. ..
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~-~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   81 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASY-PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGK   81 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESS-TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTE
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccC-CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCC
Confidence            45666667663   45899999963 4679999999999999999999999999999976654443 1111111111 22


Q ss_pred             ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....++|.+..........++|+.++.|++
T Consensus        82 ~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~  111 (138)
T 1ktg_A           82 PKSVKYWLAKLNNPDDVQLSHEHQNWKWCE  111 (138)
T ss_dssp             EEEEEEEEEEECSCCCCCCCTTEEEEEEEC
T ss_pred             ceEEEEEEEEecCCcccCCCchhcEeEecc
Confidence            233334444333322334567889999986

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.87  E-value=1.6e-21  Score=127.35  Aligned_cols=106  Identities=25%  Similarity=0.391  Sum_probs=77.0

Q ss_pred             CCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--c
Q psy9980          15 NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA--F   92 (124)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~   92 (124)
                      .+.++++++.++++++ +++||++|.  ..|.|.||||++++|||+.+||+||++||||+++....++.+.......  .
T Consensus        63 ~~~~~~~~v~~vv~~~-~~vLLv~r~--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~~  139 (205)
T 3q1p_A           63 GYQTPKVDIRAVVFQN-EKLLFVKEK--SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPSP  139 (205)
T ss_dssp             SSCCCEEEEEEEEEET-TEEEEEEC-----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSCCC
T ss_pred             CCCCCcceEEEEEEEC-CEEEEEEEc--CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCCCC
Confidence            3667788888888884 799999985  3689999999999999999999999999999999888887776543211  1


Q ss_pred             -CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          93 -GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        93 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                       ....+.+++.+....+.+.. ++|..++.|++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~  171 (205)
T 3q1p_A          140 SATHVYKIFIGCEIIGGEKKT-SIETEEVEFFG  171 (205)
T ss_dssp             CSSCEEEEEEEEEEEEECCCC-CTTSCCEEEEC
T ss_pred             CCceEEEEEEEEEecCCccCC-CCcceEEEEEe
Confidence             12233334444433344444 37889999986

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.87  E-value=2.3e-21  Score=123.00  Aligned_cols=104  Identities=26%  Similarity=0.400  Sum_probs=71.0

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCccc
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSD   96 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   96 (124)
                      ....+.+++++.++ +++||++|.. .+|.|.||||++++||++++||+||++||||+++....++...........  .
T Consensus        20 ~~~~~~v~~ii~~~-~~vLL~~r~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~--~   95 (171)
T 3id9_A           20 NIMQVRVTGILIED-EKVLLVKQKV-ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPS--L   95 (171)
T ss_dssp             --CEEEEEEEEEET-TEEEEEECSS-TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSC--E
T ss_pred             CceEEEEEEEEEEC-CEEEEEEEEC-CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCc--E
Confidence            34566777777775 7999999964 389999999999999999999999999999999987777776544332222  2


Q ss_pred             EEEEEEeccCCccCC-----CCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQEIT-----KDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~~~-----~~~~e~~~~~W~~  124 (124)
                      ..++|.+....+...     .+.+|..+++|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~  128 (171)
T 3id9_A           96 LHITFLLERIEGEITLPSNEFDHNPIHDVQMVP  128 (171)
T ss_dssp             EEEEEEEEEC-------------CCCCCEEEEE
T ss_pred             EEEEEEEEEcCCcccCCccCCCcCeeeeEEEEe
Confidence            222333333322222     2457888999985

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.87  E-value=4.7e-21  Score=122.50  Aligned_cols=103  Identities=18%  Similarity=0.138  Sum_probs=74.1

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      ...++++++++.++++||++|...   .+|.|+| |||++++||++.+||+||+.||||+++.....+.......  ...
T Consensus        36 ~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~--~~~  113 (180)
T 2fkb_A           36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFED--KNC  113 (180)
T ss_dssp             CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEE--TTE
T ss_pred             eeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecC--CCc
Confidence            345777888887789999998543   4789999 9999999999999999999999999877555554432211  112


Q ss_pred             ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....++|.+. ..+.+..+++|+.++.|++
T Consensus       114 ~~~~~~f~~~-~~~~~~~~~~E~~~~~W~~  142 (180)
T 2fkb_A          114 RVWGALFSCV-SHGPFALQEDEVSEVCWLT  142 (180)
T ss_dssp             EEEEEEEEEE-CCCCCCCCTTTEEEEEEEC
T ss_pred             eEEEEEEEEe-cCCCcCCChhHhheEEEec
Confidence            2233444444 3344455678889999986

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.86  E-value=2.7e-21  Score=120.26  Aligned_cols=101  Identities=22%  Similarity=0.262  Sum_probs=70.6

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      .+.+++++++.++++||++|...  ++|.|+||||++++||++.+||.||+.||||+++....++....+...  .....
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~   98 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYG--DVGIL   98 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEET--TEEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecC--CCeEE
Confidence            33445555555589999999653  789999999999999999999999999999999887666665332211  11223


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +++|.+....+.  ...+|..++.|++
T Consensus        99 ~~~~~~~~~~~~--~~~~e~~~~~W~~  123 (153)
T 3ees_A           99 ILFYEILYWKGE--PRAKHHMMLEWIH  123 (153)
T ss_dssp             EEEEEECEEESC--CCCSSSSEEEEEC
T ss_pred             EEEEEEEECCCC--cCCCccceEEEec
Confidence            344444433322  3457788899985

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.86  E-value=5.9e-22  Score=132.26  Aligned_cols=109  Identities=16%  Similarity=0.285  Sum_probs=75.7

Q ss_pred             CcceeeeEEEEEE---cCCCcEEEEEecCC-CCCCeeccceeecC--CCCHHHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980          16 YAHTMIGAGAVVL---NDKNQVLVVKEFYR-KRPQWKLPGGYVEM--SEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK   89 (124)
Q Consensus        16 ~~~~~~~~~~~v~---~~~~~iLl~~r~~~-~~~~w~~PgG~~~~--gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~   89 (124)
                      +.++.+++.++|+   ++++++||++|... ..|.|.+|||++++  |||+++||+||+.||||+++.....+.......
T Consensus        18 ~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~   97 (240)
T 3gz5_A           18 FKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNS   97 (240)
T ss_dssp             ---CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESS
T ss_pred             cCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCc
Confidence            4566677777777   44469999999654 68999999999999  999999999999999999988666665554432


Q ss_pred             CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .......+.+.|.+...........+|+.++.|++
T Consensus        98 r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~  132 (240)
T 3gz5_A           98 RDARGWSVTVCYTALMSYQACQIQIASVSDVKWWP  132 (240)
T ss_dssp             SSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEE
T ss_pred             cCCCceEEEEEEEEEecccccCCCCCcccceEEec
Confidence            22223334444444433333222457788999985

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.86  E-value=4.1e-21  Score=125.54  Aligned_cols=105  Identities=24%  Similarity=0.437  Sum_probs=75.7

Q ss_pred             CCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc--
Q psy9980          15 NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF--   92 (124)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--   92 (124)
                      .+.++++++.++++++ +++||++|.   .+.|.||||++++|||+.+||+||++||||+++....++..........  
T Consensus        65 ~y~~~~~~v~~vv~~~-~~vLLvrr~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  140 (206)
T 3o8s_A           65 GYQTPKLDTRAAIFQE-DKILLVQEN---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAK  140 (206)
T ss_dssp             ---CCEEEEEEEEEET-TEEEEEECT---TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC--
T ss_pred             CCCCCCccEEEEEEEC-CEEEEEEec---CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCCCC
Confidence            3566778888888886 899999995   7999999999999999999999999999999998877777764322211  


Q ss_pred             -CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          93 -GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        93 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                       ....+.+++.+....+.+.. ++|..+++|++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~  172 (206)
T 3o8s_A          141 SAHRVTKVFILCRLLGGEFQP-NSETVASGFFS  172 (206)
T ss_dssp             ---CEEEEEEEEEEEEECCCC-CSSCSEEEEEC
T ss_pred             CCceEEEEEEEEEecCCeecC-CCCceEEEEEe
Confidence             12223334444433344333 37889999986

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.86  E-value=6e-21  Score=123.46  Aligned_cols=104  Identities=17%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             eeeeEEEEEEcCCC--cEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980          19 TMIGAGAVVLNDKN--QVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG   93 (124)
Q Consensus        19 ~~~~~~~~v~~~~~--~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   93 (124)
                      .+.++.+++++.++  ++||++|...   ++|.|+||||++++||++++||+||++||||+++....++.......... 
T Consensus        33 ~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~-  111 (194)
T 1nqz_A           33 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPV-  111 (194)
T ss_dssp             CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETT-
T ss_pred             CceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCC-
Confidence            44555555557656  8999999642   68999999999999999999999999999999998777766553322211 


Q ss_pred             cccEEEEEEeccC-Ccc-CCCCcccccceeecC
Q psy9980          94 CSDIYFIVRLKPL-TQE-ITKDDREITESKWMD  124 (124)
Q Consensus        94 ~~~~~~~~~~~~~-~~~-~~~~~~e~~~~~W~~  124 (124)
                       ....++|.+... ... ...+.+|+.++.|++
T Consensus       112 -~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~  143 (194)
T 1nqz_A          112 -GFHVTPVLGRIAPEALDTLRVTPEVAQIITPT  143 (194)
T ss_dssp             -TEEEEEEEEEECGGGGGGCCCCTTEEEEECCB
T ss_pred             -CeEEEEEEEEecCCccccCCCccceeEEEEEE
Confidence             222333333332 222 345677889999985

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.86  E-value=6.6e-21  Score=120.96  Aligned_cols=103  Identities=21%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecC-C-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFY-R-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~-~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      ..+.++++++++ ++++||++|.. . .++.|+||||++++|||+++||+||+.||||+ +.....+.........  ..
T Consensus        32 ~~~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~--~~  107 (170)
T 1v8y_A           32 EHKPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGF--TD  107 (170)
T ss_dssp             EECCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTT--BC
T ss_pred             ecCCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCc--cc
Confidence            334577788888 68999998743 3 68899999999999999999999999999999 7665555544322111  12


Q ss_pred             cEEEEEEeccCC-ccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLT-QEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~  124 (124)
                      ...++|.+.... .....+++|+.++.|++
T Consensus       108 ~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~  137 (170)
T 1v8y_A          108 EKTHVFLAENLKEVEAHPDEDEAIEVVWMR  137 (170)
T ss_dssp             CEEEEEEEEEEEECC--------CEEEEEC
T ss_pred             cEEEEEEEEeccccCCCCCCCceEEEEEEE
Confidence            233333333222 23334567889999986

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.85  E-value=4.2e-21  Score=119.93  Aligned_cols=104  Identities=18%  Similarity=0.275  Sum_probs=71.7

Q ss_pred             CcceeeeEEEEEEcCCCc----EEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC
Q psy9980          16 YAHTMIGAGAVVLNDKNQ----VLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA   90 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~----iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~   90 (124)
                      ...++.++.+++.++ ++    +|+++|... ++| |.+|||++++|||+++||+||+.||||+++....++....... 
T Consensus         4 ~~~~~~~~~~ii~~~-~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-   80 (155)
T 2b06_A            4 SQLTILTNICLIEDL-ETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPL-   80 (155)
T ss_dssp             GGCEEEEEEEEEEET-TTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEEC-
T ss_pred             CcCcEEEEEEEEEEC-CCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeecc-
Confidence            345677788888875 56    888888544 666 9999999999999999999999999999998777776654332 


Q ss_pred             CcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          91 AFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+...+.++|.+....+.+  ...|..+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~  112 (155)
T 2b06_A           81 DTGGRYIVICYKATEFSGTL--QSSEEGEVSWVQ  112 (155)
T ss_dssp             TTSCEEEEEEEEECEEEECC--CCBTTBEEEEEE
T ss_pred             CCCceEEEEEEEEEecCCCC--CCCcceeeEEee
Confidence            22233344455544333322  336778899975

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.85  E-value=2.3e-21  Score=124.87  Aligned_cols=104  Identities=17%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             eeEEEEEEc--C-----CCcEEEEEec-------CC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980          21 IGAGAVVLN--D-----KNQVLVVKEF-------YR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR   85 (124)
Q Consensus        21 ~~~~~~v~~--~-----~~~iLl~~r~-------~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~   85 (124)
                      +++.++++.  +     ++++||++|.       .. ..|.|.+|||++++|||+++||+||++||||+++....++...
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~  107 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF  107 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence            555555544  3     3589999993       23 7899999999999999999999999999999998887777765


Q ss_pred             ecccCCcCcccEEEEEEeccCCc--cCCCCcccccceeecC
Q psy9980          86 HTHKAAFGCSDIYFIVRLKPLTQ--EITKDDREITESKWMD  124 (124)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~W~~  124 (124)
                      ...........+..++.+.....  ......+|+.+++|++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~  148 (187)
T 3i9x_A          108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFP  148 (187)
T ss_dssp             CCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEE
T ss_pred             cCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEe
Confidence            43322222222222333222211  1122457788899985

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.85  E-value=3.9e-21  Score=124.05  Aligned_cols=104  Identities=17%  Similarity=0.252  Sum_probs=72.6

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccc-eeEEEeecc-cCCcC
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFH-SVVAFRHTH-KAAFG   93 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~-~~~~~   93 (124)
                      ..++.+++++.++++||++|...   ++|.|++ |||++++|||+++||+||++||||+++... .++...... .....
T Consensus        32 ~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  111 (190)
T 1hzt_A           32 HLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSG  111 (190)
T ss_dssp             EECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTS
T ss_pred             EEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCC
Confidence            35778888887789999999543   5899999 999999999999999999999999998765 433322111 11111


Q ss_pred             --cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 --CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 --~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                        ...+.++|.+.. .+.+..+++|+.+++|++
T Consensus       112 ~~~~~~~~~f~~~~-~~~~~~~~~E~~~~~W~~  143 (190)
T 1hzt_A          112 IVENEVCPVFAART-TSALQINDDEVMDYQWCD  143 (190)
T ss_dssp             CEEEEECCEEEEEB-CSCCCCCTTTEEEEEEEC
T ss_pred             CcceEEEEEEEEec-CCCCcCCccceeeEEEec
Confidence              122333444433 234445677899999986

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.85  E-value=1.4e-20  Score=119.02  Aligned_cols=93  Identities=20%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI  100 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (124)
                      +.+++++++.++++||++|+   .|.|.+|||++++|||+.+||+||+.||||+++....++.....   ..   ...++
T Consensus        16 ~~~~~~ii~~~~~vLL~~r~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~---~~---~~~~~   86 (163)
T 3f13_A           16 ARRATAIIEMPDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHIT---PF---NAHKV   86 (163)
T ss_dssp             EEEEEEECEETTEEEEEECC------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEEC---SS---EEEEE
T ss_pred             eEEEEEEEEeCCEEEEEEEC---CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEec---CC---eEEEE
Confidence            34444444444789999984   58999999999999999999999999999999886666544321   11   33333


Q ss_pred             EEeccCCccCCCCcccccceeecC
Q psy9980         101 VRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      |.+. ..+.+.. .+|+.+++|++
T Consensus        87 f~~~-~~~~~~~-~~E~~~~~W~~  108 (163)
T 3f13_A           87 YLCI-AQGQPKP-QNEIERIALVS  108 (163)
T ss_dssp             EEEE-C-CCCCC-CTTCCEEEEES
T ss_pred             EEEE-ECCcCcc-CCCceEEEEEC
Confidence            4443 2344444 34888999985

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.85  E-value=8.5e-21  Score=123.15  Aligned_cols=107  Identities=14%  Similarity=0.225  Sum_probs=66.7

Q ss_pred             CcceeeeEEEEEEcCCC-cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccC-cccc--eeEEE--eeccc
Q psy9980          16 YAHTMIGAGAVVLNDKN-QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR-TEFH--SVVAF--RHTHK   89 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~-~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~-~~~~--~~~~~--~~~~~   89 (124)
                      ....++++++++++.++ ++||++|+  ..|.|.+|||++++|||+.+||+||+.||||++ +...  .+...  .....
T Consensus        41 ~~~~h~~~~~vv~~~~~~~vLL~~r~--~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  118 (197)
T 3fcm_A           41 NTIAHLTSSAFAVNKERNKFLMIHHN--IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNG  118 (197)
T ss_dssp             CSSEEEEEEEEEECTTSCEEEEEEET--TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECC
T ss_pred             CCCccEEEEEEEEECCCCEEEEEEec--CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecC
Confidence            44566788888888654 99999986  468999999999999999999999999999998 4421  11111  11111


Q ss_pred             CC------cCcccEEEEEEeccCC-ccCCCCcccccceeecC
Q psy9980          90 AA------FGCSDIYFIVRLKPLT-QEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~------~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~  124 (124)
                      ..      ....++.+.|.+.... .....+++|+.+++|++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~  160 (197)
T 3fcm_A          119 HIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIP  160 (197)
T ss_dssp             EEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEE
T ss_pred             ccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEcc
Confidence            00      1111222333333333 23455678999999985

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.85  E-value=2.1e-20  Score=115.81  Aligned_cols=104  Identities=23%  Similarity=0.229  Sum_probs=70.7

Q ss_pred             eeeeEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEeecc-------
Q psy9980          19 TMIGAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRHTH-------   88 (124)
Q Consensus        19 ~~~~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~~~-------   88 (124)
                      ...++.+++++. ++++||++|+.. +|.|++|||++++|||+.+||+||+.||||+++...  .++......       
T Consensus         8 ~~~~v~~~i~~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   86 (150)
T 2o1c_A            8 RPVSILVVIYAQDTKRVLMLQRRDD-PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSH   86 (150)
T ss_dssp             CSEEEEEEEEETTTCEEEEEECSSS-TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCGG
T ss_pred             CceEEEEEEEeCCCCEEEEEEecCC-CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeecc
Confidence            346788888875 489999999653 689999999999999999999999999999998753  344332111       


Q ss_pred             -c--CCcC-cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          89 -K--AAFG-CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        89 -~--~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                       .  .... .....++|.+....... ...+|+.+++|++
T Consensus        87 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~  125 (150)
T 2o1c_A           87 LRHRYAPGVTRNTESWFCLALPHERQ-IVFTEHLAYKWLD  125 (150)
T ss_dssp             GGGGBCTTCCEEEEEEEEEEESSCCC-CCCSSSSCEEEEE
T ss_pred             cccccCCCCcceEEEEEEEEcCCCCC-cChhHhhccEeec
Confidence             0  1111 12333444444333322 2347889999985

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.84  E-value=4.4e-20  Score=116.71  Aligned_cols=66  Identities=26%  Similarity=0.414  Sum_probs=57.5

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR   85 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~   85 (124)
                      ..+.++.+++++.++++||++|..  .+.|.+|||++++|||+++||.||+.||||+++....++...
T Consensus         6 ~~~~~v~~~i~~~~~~vLl~~r~~--~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~   71 (164)
T 2kdv_A            6 GYRPNVGIVICNRQGQVMWARRFG--QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILAST   71 (164)
T ss_dssp             SEEEEEEEEEECTTSEEEEEEETT--CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred             CCCcEEEEEEEccCCEEEEEEEcC--CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEe
Confidence            467788888998778999999853  689999999999999999999999999999998876666653

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.84  E-value=1.2e-20  Score=118.67  Aligned_cols=59  Identities=24%  Similarity=0.454  Sum_probs=52.2

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      ..+.++.+++++.++++||++|.. .+|.|++|||++++|||+++||+||++||||+++.
T Consensus        12 ~~~~~v~~~i~~~~~~vLl~~r~~-~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   70 (165)
T 1f3y_A           12 GYRRNVGICLMNNDKKIFAASRLD-IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA   70 (165)
T ss_dssp             SCCCEEEEEEECTTSCEEEEEETT-EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSE
T ss_pred             ceeeeEEEEEECCCCcEEEEecCC-CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChh
Confidence            456788888888878999999953 35899999999999999999999999999999874

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.84  E-value=1.6e-20  Score=116.24  Aligned_cols=105  Identities=21%  Similarity=0.181  Sum_probs=71.5

Q ss_pred             CcceeeeEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC--Cc
Q psy9980          16 YAHTMIGAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA--AF   92 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~   92 (124)
                      ....+.++++++.++ ++++||++|.   .|.|.||||++++||++++||+||+.||||+++....++.....+..  ..
T Consensus        14 ~~~~~~~~~~vi~~~~~~~vLl~~r~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   90 (148)
T 2azw_A           14 TYQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHR   90 (148)
T ss_dssp             CCEECCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTT
T ss_pred             ceeeeeEEEEEEECCCCCeEEEEEcC---CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCC
Confidence            445667777777775 6899999983   48999999999999999999999999999999887666654321111  11


Q ss_pred             C--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          93 G--CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        93 ~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .  .....++|.+....... ...+|+.++.|++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~  123 (148)
T 2azw_A           91 QTAYYNPGYFYVANTWRQLS-EPLERTNTLHWVA  123 (148)
T ss_dssp             TEEEEEEEEEEEEEEEEECS-SCC-CCSEEEEEC
T ss_pred             CcceEEEEEEEEEEcCcCCc-CCCCceeeEEEee
Confidence            1  11233444443332222 2346778999986

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.84  E-value=2e-20  Score=114.82  Aligned_cols=98  Identities=20%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             eEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF   99 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   99 (124)
                      .+++++ +.++++||++|...  ++|.|+||||++++||++++||+||+.||||+.+....++....+...  ......+
T Consensus        11 ~~~~ii-~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~~~   87 (140)
T 2rrk_A           11 VVAAII-ERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVS--GRIIHLH   87 (140)
T ss_dssp             EEEEEE-EETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEET--TEEEEEE
T ss_pred             EEEEEE-EcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecC--CcEEEEE
Confidence            334444 55579999999543  689999999999999999999999999999999876666655432211  1122233


Q ss_pred             EEEeccCCccCCCCcccccceeecC
Q psy9980         100 IVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +|.+......  ...+|+.++.|++
T Consensus        88 ~~~~~~~~~~--~~~~e~~~~~W~~  110 (140)
T 2rrk_A           88 AWHVPDFHGT--LQAHEHQALVWCS  110 (140)
T ss_dssp             EEEESEEEEC--CCCSSCSCEEEEC
T ss_pred             EEEEEeeCCC--cCCCccceeEEeC
Confidence            4444332222  2346778899985

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.84  E-value=5.7e-21  Score=124.90  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=66.4

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEec-CC-CCCCeeccceeec-CCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEF-YR-KRPQWKLPGGYVE-MSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~-~~-~~~~w~~PgG~~~-~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      ....++++++++.++++||++|. .. .++.|+||||+++ +|||+++||+||+.||||+++....++...+......  
T Consensus        41 ~~~~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~--  118 (207)
T 1mk1_A           41 EHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFS--  118 (207)
T ss_dssp             EECCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTB--
T ss_pred             eCCCEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCcc--
Confidence            33456777778877899999884 33 5789999999999 9999999999999999999988666555442222111  


Q ss_pred             ccEEEEEEeccCCccC---CCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEI---TKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~---~~~~~e~~~~~W~~  124 (124)
                      ...+++|.+.......   ..+++|+.++.|++
T Consensus       119 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~  151 (207)
T 1mk1_A          119 DESVRVYLATGLREVGRPEAHHEEADMTMGWYP  151 (207)
T ss_dssp             CCCEEEEEEEEEEECCC----------CEEEEE
T ss_pred             ccEEEEEEEEccccCCCCCCCCCCceEEEEEEE
Confidence            1122233332222111   13467888999985

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.84  E-value=2.4e-20  Score=120.30  Aligned_cols=100  Identities=24%  Similarity=0.323  Sum_probs=69.7

Q ss_pred             eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc---cE
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS---DI   97 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~---~~   97 (124)
                      ..+.+++.++ +++||++|.  ..|.|.+|||++++||++++||+||+.||||+++....++.............   .+
T Consensus         5 ~v~~~vi~~~-~~vLL~~r~--~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (188)
T 3fk9_A            5 RVTNCIVVDH-DQVLLLQKP--RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWM   81 (188)
T ss_dssp             EEEEEEEEET-TEEEEEECT--TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEC-CEEEEEEeC--CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEE
Confidence            3455555554 799999985  47999999999999999999999999999999998777766654332222111   14


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .++|.+....+.+.. ..+..+++|++
T Consensus        82 ~~~f~a~~~~~~~~~-~~e~~~~~W~~  107 (188)
T 3fk9_A           82 LFTFKATEHEGEMLK-QSPEGKLEWKK  107 (188)
T ss_dssp             EEEEEESCEESCCCS-EETTEEEEEEE
T ss_pred             EEEEEEECCCCCCcC-CCCCEeEEEEE
Confidence            455555544443332 34446888974

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.83  E-value=1.9e-20  Score=116.86  Aligned_cols=102  Identities=22%  Similarity=0.358  Sum_probs=70.4

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc--c
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC--S   95 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~--~   95 (124)
                      ..+.++++++.++ +++||++|    .|.|.||||++++||++++||+||+.||||+++....++............  .
T Consensus        17 ~~~~~~~~ii~~~-~~vLl~~r----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   91 (154)
T 2pqv_A           17 VFGVRATALIVQN-HKLLVTKD----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYH   91 (154)
T ss_dssp             EEEEEEEECCEET-TEEEEEEE----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEE
T ss_pred             eEeEEEEEEEEEC-CEEEEEec----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcce
Confidence            4456777777775 79999999    589999999999999999999999999999998876666554322111111  1


Q ss_pred             cEEEEEEeccCCccCC--CCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEIT--KDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~  124 (124)
                      .+.++|.+........  ..++|..+++|++
T Consensus        92 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~  122 (154)
T 2pqv_A           92 NIEFHYLVDLLEDAPLTMQEDEKRQPCEWID  122 (154)
T ss_dssp             EEEEEEEEEESSCCCSEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEecCCCCcccCCCCceeeEEEeE
Confidence            2333444443333221  1345678899975

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.83  E-value=6.4e-21  Score=118.02  Aligned_cols=56  Identities=25%  Similarity=0.436  Sum_probs=47.8

Q ss_pred             eeEEEEEEcCC-CcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980          21 IGAGAVVLNDK-NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF   78 (124)
Q Consensus        21 ~~~~~~v~~~~-~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~   78 (124)
                      ..+++++++.+ +++||++|.  ..|.|.+|||++++|||+.+||+||+.||||+++..
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   61 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGT--ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD   61 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCS--SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS
T ss_pred             EEEEEEEEeCCCCEEEEEEEc--CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH
Confidence            34566666754 899999885  368999999999999999999999999999998863

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.83  E-value=2.2e-19  Score=121.89  Aligned_cols=112  Identities=19%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             CCCCCcceeeeEEEEEEc--C---CCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980          12 RIPNYAHTMIGAGAVVLN--D---KNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR   85 (124)
Q Consensus        12 ~~~~~~~~~~~~~~~v~~--~---~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~   85 (124)
                      .++.+..+.+++.++|+.  +   ++++||++|... ..|.|.+|||++++||++++||+||+.||||+++....+..+.
T Consensus        31 ~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~  110 (273)
T 2fml_A           31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH  110 (273)
T ss_dssp             CCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEE
T ss_pred             hcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEE
Confidence            334567777787777775  2   348999999654 6799999999999999999999999999999876644333322


Q ss_pred             ecc-cCCc-CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          86 HTH-KAAF-GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        86 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ... .... ....+.++|.+...... ....+|..++.|++
T Consensus       111 ~~~~~~r~~~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~~  150 (273)
T 2fml_A          111 SFSRPDRDPRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFN  150 (273)
T ss_dssp             EECCTTSSTTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEE
T ss_pred             EEcCCCCCCCceEEEEEEEEEeCCCC-CCCCcceeeEEEEE
Confidence            111 1111 12233344444333322 33567888999985

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.83  E-value=5.9e-21  Score=115.65  Aligned_cols=97  Identities=21%  Similarity=0.291  Sum_probs=64.9

Q ss_pred             EEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980          24 GAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV  101 (124)
Q Consensus        24 ~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (124)
                      ++++.+.++++||++|...  ++|.|+||||++++||++.+||.||+.||||+.+....++....+. ... .....++|
T Consensus         8 ~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~-~~~-~~~~~~~~   85 (129)
T 1mut_A            8 VGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYE-FPD-RHITLWFW   85 (129)
T ss_dssp             CEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCC-CSS-CEEECCCE
T ss_pred             EEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEe-cCC-ceEEEEEE
Confidence            3444565689999999644  6899999999999999999999999999999998755544433211 111 11122233


Q ss_pred             EeccCCccCCCCcccccceeecC
Q psy9980         102 RLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       102 ~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .+......  ...+|..++.|++
T Consensus        86 ~~~~~~~~--~~~~e~~~~~W~~  106 (129)
T 1mut_A           86 LVERWEGE--PWGKEGQPGEWMS  106 (129)
T ss_dssp             EEEECSSC--CCCCSSCCCEEEE
T ss_pred             EEEccCCc--cCCcccceeEEeC
Confidence            33332222  2346778888974

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.82  E-value=5.6e-20  Score=119.18  Aligned_cols=66  Identities=29%  Similarity=0.450  Sum_probs=53.6

Q ss_pred             eeeEEEEEE--cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980          20 MIGAGAVVL--NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH   86 (124)
Q Consensus        20 ~~~~~~~v~--~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~   86 (124)
                      ...++++++  ++++++||++|.. .+|.|.||||++++||++++||+||++||||+++....++....
T Consensus        40 ~~~~~~vi~~~~~~~~vLLv~r~~-~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~  107 (194)
T 2fvv_A           40 KKRAACLCFRSESEEEVLLVSSSR-HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFE  107 (194)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSS-CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             cccEEEEEEEECCCCEEEEEEEeC-CCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEE
Confidence            344555555  3568999999853 35899999999999999999999999999999988776666654

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.82  E-value=6.9e-20  Score=119.09  Aligned_cols=101  Identities=19%  Similarity=0.198  Sum_probs=68.2

Q ss_pred             eeEEEEEEcCCCcEEEEEec-CC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEE
Q psy9980          21 IGAGAVVLNDKNQVLVVKEF-YR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY   98 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~-~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   98 (124)
                      .++++++++++ ++||++|. .+ .++.|+||||++++||++++||+||+.||||+++....++..........  ...+
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~--~~~~  126 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYF--SSKM  126 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTC--CCEE
T ss_pred             CEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCcc--CcEE
Confidence            35666667765 99999873 33 56789999999999999999999999999999988666655543222111  1223


Q ss_pred             EEEEeccCC-ccCCCCcccccceeecC
Q psy9980          99 FIVRLKPLT-QEITKDDREITESKWMD  124 (124)
Q Consensus        99 ~~~~~~~~~-~~~~~~~~e~~~~~W~~  124 (124)
                      .+|.+.... .....+++|..++.|++
T Consensus       127 ~~f~a~~~~~~~~~~~~~E~~~~~w~~  153 (198)
T 1vhz_A          127 NIVVAQDLYPESLEGDEPEPLPQVRWP  153 (198)
T ss_dssp             EEEEEEEEEECCCCCCCSSCCCEEEEE
T ss_pred             EEEEEEeCCcccCCCCCCceEEEEEEE
Confidence            333333222 22234567788889974

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.82  E-value=1.8e-19  Score=125.23  Aligned_cols=108  Identities=24%  Similarity=0.343  Sum_probs=68.9

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE----E-eeccc
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA----F-RHTHK   89 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~----~-~~~~~   89 (124)
                      ++++.+++.+++.++ +++||++|+.. .+|.|++|||++++|||+++||+||+.||||+++....+++    . .....
T Consensus       199 ~~~~~~~v~~vi~~~-~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  277 (341)
T 2qjo_A          199 YAPTFITTDAVVVQA-GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAP  277 (341)
T ss_dssp             SCCCEEEEEEEEEET-TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCT
T ss_pred             CCCCceEEEEEEEeC-CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCC
Confidence            566678888888864 79999999654 57999999999999999999999999999999987544321    1 11111


Q ss_pred             CCc-CcccEEEEEEeccCCccC-C-CCcccccceeecC
Q psy9980          90 AAF-GCSDIYFIVRLKPLTQEI-T-KDDREITESKWMD  124 (124)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~-~-~~~~e~~~~~W~~  124 (124)
                      ... ....+..+|.+....+.. . .+++|+.+++|++
T Consensus       278 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~  315 (341)
T 2qjo_A          278 GRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMS  315 (341)
T ss_dssp             TSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEE
T ss_pred             CCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEee
Confidence            111 112233334443333222 2 3567889999985

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.81  E-value=1.1e-19  Score=118.98  Aligned_cols=103  Identities=15%  Similarity=0.091  Sum_probs=65.9

Q ss_pred             eeeEEEEEEc-CCCcEEEEEe-cCC-C-----CCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980          20 MIGAGAVVLN-DKNQVLVVKE-FYR-K-----RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA   91 (124)
Q Consensus        20 ~~~~~~~v~~-~~~~iLl~~r-~~~-~-----~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~   91 (124)
                      ..++++++++ .++++||+++ +.+ .     ++.|++|||++++||++++||+||+.||||+++.....+......+..
T Consensus        57 ~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~  136 (209)
T 1g0s_A           57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG  136 (209)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred             CCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCc
Confidence            4577777777 5678999876 333 2     578999999999999999999999999999998765555543222211


Q ss_pred             cCcccEEEEEEecc-C---Cc-cCCCCcccccceeecC
Q psy9980          92 FGCSDIYFIVRLKP-L---TQ-EITKDDREITESKWMD  124 (124)
Q Consensus        92 ~~~~~~~~~~~~~~-~---~~-~~~~~~~e~~~~~W~~  124 (124)
                        ....+++|.+.. .   .+ ....+.+|..++.|++
T Consensus       137 --~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~  172 (209)
T 1g0s_A          137 --TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVS  172 (209)
T ss_dssp             --BCCEEEEEEEECCGGGCC--------CCSCEEEEEE
T ss_pred             --cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEE
Confidence              112233333332 1   11 1123556778899975

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.81  E-value=2e-19  Score=125.60  Aligned_cols=111  Identities=22%  Similarity=0.374  Sum_probs=73.7

Q ss_pred             CCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCccccee----EEEe-e
Q psy9980          13 IPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV----VAFR-H   86 (124)
Q Consensus        13 ~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~----~~~~-~   86 (124)
                      ...+++...++.+++.++ +++||++|+.. .+|.|++|||++++|||+++||+||++||||+++....+    .... .
T Consensus       201 ~~~~~~~~~~v~~vv~~~-~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~  279 (352)
T 2qjt_B          201 KAPFKPNFVTVDALVIVN-DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVF  279 (352)
T ss_dssp             SSSSCCEEEEEEEEEEET-TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEE
T ss_pred             ccCCCCCceEEEEEEEEC-CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEe
Confidence            344667778888888864 79999999654 569999999999999999999999999999999874332    1111 1


Q ss_pred             cccCCc-CcccEEEEEEeccCCcc--CC-CCcccccceeecC
Q psy9980          87 THKAAF-GCSDIYFIVRLKPLTQE--IT-KDDREITESKWMD  124 (124)
Q Consensus        87 ~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~e~~~~~W~~  124 (124)
                      .+.... ....+..+|.+....+.  +. ...+|+.+++|++
T Consensus       280 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~  321 (352)
T 2qjt_B          280 DYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWIS  321 (352)
T ss_dssp             CCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEE
T ss_pred             cCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEec
Confidence            111111 11123333333322222  22 2467889999985

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.81  E-value=2.1e-20  Score=122.14  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             eEEEEEEcCCCcEEEEEecCC-----CCCCeec-cceeecCCCC--H----HHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYR-----KRPQWKL-PGGYVEMSED--I----GEAAVREVFEETNIRTEFHSVVAFRHTHK   89 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~-----~~~~w~~-PgG~~~~gEs--~----~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~   89 (124)
                      ..++++.+ +|++|+++|...     ..|.|.+ |||++++|||  +    ++||+||++||||+++....++++.....
T Consensus        70 i~~~II~~-~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~  148 (211)
T 3e57_A           70 IPYVVIMD-GDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSST  148 (211)
T ss_dssp             EEEEEEEE-TTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCS
T ss_pred             EEEEEEEE-CCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccC
Confidence            34444444 589999999543     2378998 9999999998  5    99999999999999888777777654322


Q ss_pred             CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ......++.++|.+....+.  +..+|..+++|++
T Consensus       149 ~~~~~~~l~~~f~~~~~~g~--~~~~E~~~~~W~~  181 (211)
T 3e57_A          149 TEVSRVHLGALFLGRGKFFS--VKEKDLFEWELIK  181 (211)
T ss_dssp             SHHHHTEEEEEEEEEEEEEE--ESCTTTCEEEEEE
T ss_pred             CCCCeEEEEEEEEEEeCCce--eCCCCeEEEEEEE
Confidence            22222234344555433332  3456778899974

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.80  E-value=3.2e-19  Score=116.98  Aligned_cols=93  Identities=18%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             CcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEEEeccCCc-
Q psy9980          32 NQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQ-  108 (124)
Q Consensus        32 ~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  108 (124)
                      +++||+++ +.. .++.|+||||++++||++++||+||++||||+++....++...............+|++.+..... 
T Consensus        77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~  156 (212)
T 2dsc_A           77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAE  156 (212)
T ss_dssp             CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGG
T ss_pred             cEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccc
Confidence            47888876 333 467899999999999999999999999999999875555433222111111122223333222211 


Q ss_pred             ----cCCCCcccccceeecC
Q psy9980         109 ----EITKDDREITESKWMD  124 (124)
Q Consensus       109 ----~~~~~~~e~~~~~W~~  124 (124)
                          ....+++|+.++.|++
T Consensus       157 ~~~~~~~~~~~E~~~~~w~~  176 (212)
T 2dsc_A          157 NARPKPKPGDGEFVEVISLP  176 (212)
T ss_dssp             GSSCCCCCCTTCCCEEEEEE
T ss_pred             ccCCCCCCCCCceEEEEEEE
Confidence                2334567889999985

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.80  E-value=1.7e-19  Score=118.82  Aligned_cols=118  Identities=14%  Similarity=0.111  Sum_probs=63.8

Q ss_pred             cCCCCCCCCCCCCcceeeeEEEEEEc-CCCcEEEEEecC-C-C-------------------------------CCCeec
Q psy9980           4 WLPDDSESRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFY-R-K-------------------------------RPQWKL   49 (124)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~iLl~~r~~-~-~-------------------------------~~~w~~   49 (124)
                      ..+++...... ......++++++++ .++++||+++.. . .                               ++.|+|
T Consensus        21 ~~~~G~~~~~e-~v~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wel   99 (218)
T 3q91_A           21 QSMNGAQKSWD-FMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVEL   99 (218)
T ss_dssp             ---------------CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEEC
T ss_pred             ECCCCCEEEEE-EEEcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEEC
Confidence            34566554444 33335677778887 457899988632 1 2                               689999


Q ss_pred             cceeecC-CCCHHHHHHHHHHHHhccCc--ccceeEEEeecccCCcCcccEEEEEEeccC------CccCCCCcccccce
Q psy9980          50 PGGYVEM-SEDIGEAAVREVFEETNIRT--EFHSVVAFRHTHKAAFGCSDIYFIVRLKPL------TQEITKDDREITES  120 (124)
Q Consensus        50 PgG~~~~-gEs~~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~  120 (124)
                      |||++++ |||+++||+||+.||||+++  .....+.......... . ..+++|.+...      .+....+++|..++
T Consensus       100 PgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~-~-~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev  177 (218)
T 3q91_A          100 CAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLT-G-SRQTMFYTEVTDAQRSGPGGGLVEEGELIEV  177 (218)
T ss_dssp             EEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---C-C-EEEEEEEEEECGGGBCC---------CCEEE
T ss_pred             CcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEecCCCcc-c-eEEEEEEEEECCcccccCCCCCCCCCcEEEE
Confidence            9999999 99999999999999999998  4444444332211111 1 22223333221      12234456788999


Q ss_pred             eecC
Q psy9980         121 KWMD  124 (124)
Q Consensus       121 ~W~~  124 (124)
                      .|++
T Consensus       178 ~wv~  181 (218)
T 3q91_A          178 VHLP  181 (218)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.80  E-value=8e-20  Score=114.47  Aligned_cols=58  Identities=36%  Similarity=0.354  Sum_probs=50.0

Q ss_pred             eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccccee
Q psy9980          21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV   81 (124)
Q Consensus        21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~   81 (124)
                      +++++++++ ++++||++|+.  .|.|.+|||++++|||+++||+||+.||||+++....+
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~--~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~   59 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF   59 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC
T ss_pred             eEEEEEEEE-CCEEEEEEEcC--CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccc
Confidence            456777777 58999999863  68999999999999999999999999999999875444

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.80  E-value=4.9e-19  Score=114.44  Aligned_cols=101  Identities=13%  Similarity=0.099  Sum_probs=65.4

Q ss_pred             eeeEEEEEEc-CCCcEEEEEecCC--------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC
Q psy9980          20 MIGAGAVVLN-DKNQVLVVKEFYR--------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA   90 (124)
Q Consensus        20 ~~~~~~~v~~-~~~~iLl~~r~~~--------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~   90 (124)
                      ..++++++++ .++++||+++...        .++.|+||||+++ |||+++||+||+.||||+++.....+........
T Consensus        45 ~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~  123 (191)
T 3o6z_A           45 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG  123 (191)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTT
T ss_pred             CCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCC
Confidence            3466777777 4579999887421        4678999999999 9999999999999999999876665554432221


Q ss_pred             CcCcccEEEEEEeccCCcc-----CCCCcccccceeecC
Q psy9980          91 AFGCSDIYFIVRLKPLTQE-----ITKDDREITESKWMD  124 (124)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~W~~  124 (124)
                      .  ....+++|.+......     ... ++|..++.|++
T Consensus       124 ~--~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~  159 (191)
T 3o6z_A          124 G--VTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELP  159 (191)
T ss_dssp             T--BCCEEEEEEEECCTTCC---------CCSSEEEEEE
T ss_pred             c--cCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEE
Confidence            1  1223333333322111     122 67888999985

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.79  E-value=2.4e-19  Score=121.56  Aligned_cols=58  Identities=29%  Similarity=0.494  Sum_probs=49.4

Q ss_pred             eeeEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980          20 MIGAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF   78 (124)
Q Consensus        20 ~~~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~   78 (124)
                      ..++++++++. ++++||++|.. .+|.|.+|||++++|||+++||+||+.||||+++..
T Consensus       101 v~~v~avv~~~~~~~vLLv~r~~-~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~  159 (271)
T 2a6t_A          101 IPVRGAIMLDMSMQQCVLVKGWK-ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS  159 (271)
T ss_dssp             CCEEEEEEBCSSSSEEEEEEESS-TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEEECCCCEEEEEEEeC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcee
Confidence            34566777774 48999999954 468999999999999999999999999999998875

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.79  E-value=6.8e-19  Score=110.02  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             ceeeeEEEEEEcC---CCcEEEEEecCC--CCCCeeccceeecCCCCHH-HHHHHHHHHHhc-cCcccceeEEEeecccC
Q psy9980          18 HTMIGAGAVVLND---KNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIG-EAAVREVFEETN-IRTEFHSVVAFRHTHKA   90 (124)
Q Consensus        18 ~~~~~~~~~v~~~---~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~-~aa~RE~~EE~G-l~~~~~~~~~~~~~~~~   90 (124)
                      +.+..+++++.++   ++++||+||...  ++|.|+||||++++||++. +||+||+.|||| +.+.....+....   +
T Consensus        17 ~~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~---~   93 (155)
T 1x51_A           17 REESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVV---H   93 (155)
T ss_dssp             TEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBC---C
T ss_pred             CeEEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEE---E
Confidence            4455566666653   479999999543  7899999999999999996 999999999999 8776544433221   1


Q ss_pred             CcCcc-cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          91 AFGCS-DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        91 ~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .+... ..+.+|.+....+.+  ...|..++.|++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~  126 (155)
T 1x51_A           94 TFSHIKLTYQVYGLALEGQTP--VTTVPPGARWLT  126 (155)
T ss_dssp             BCSSCEEEEEEEEEECSSCCC--CCCCCTTEEEEE
T ss_pred             ecCCccEEEEEEEEEEcCCCC--CCCCCCccEEcc
Confidence            12121 223344444333322  234667888974

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.77  E-value=7.2e-18  Score=112.81  Aligned_cols=106  Identities=16%  Similarity=0.148  Sum_probs=73.3

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccc-eeecCC------CCH---HHHHHHHHHHHhccCccc-----c
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPG-GYVEMS------EDI---GEAAVREVFEETNIRTEF-----H   79 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~Pg-G~~~~g------Es~---~~aa~RE~~EE~Gl~~~~-----~   79 (124)
                      ..+.++.+++++.+|++||+||...   ++|.|++|+ |++++|      |++   ++||+||+.||||+.+..     .
T Consensus        68 ~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l  147 (246)
T 2pny_A           68 LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDI  147 (246)
T ss_dssp             CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGS
T ss_pred             cEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCcccc
Confidence            3456788888887789999999543   689999995 999999      887   999999999999998652     2


Q ss_pred             eeEEEeecc-cCCcC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          80 SVVAFRHTH-KAAFG--CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        80 ~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+....+. .....  ...+.++|.+.. ...+.++++|+.+++|++
T Consensus       148 ~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~  194 (246)
T 2pny_A          148 VFMTIYHHKAKSDRIWGEHEICYLLLVRK-NVTLNPDPSETKSILYLS  194 (246)
T ss_dssp             EEEEEEEEEEESSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEEC
T ss_pred             EEEEEEEEEecCCCceeeeEEEEEEEEEE-CCCCCCChHHeeEEEEEe
Confidence            333332211 11111  122444554443 334556778999999986

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.77  E-value=9.9e-18  Score=111.49  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=73.1

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCC------CC---HHHHHHHHHHHHhccCccc-----c
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMS------ED---IGEAAVREVFEETNIRTEF-----H   79 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~g------Es---~~~aa~RE~~EE~Gl~~~~-----~   79 (124)
                      ..+.++.+++++.+|++||+||...   ++|.|++| ||++++|      |+   +++||+||+.||||+.+..     .
T Consensus        57 ~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l  136 (235)
T 2dho_A           57 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEI  136 (235)
T ss_dssp             CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGS
T ss_pred             ceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhc
Confidence            3456788888887789999999543   68999999 5999999      87   4999999999999998652     2


Q ss_pred             eeEEEeecc-cCCcC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          80 SVVAFRHTH-KAAFG--CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        80 ~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+....+. .....  ...+.++|.+.. ...+.++++|+.+++|++
T Consensus       137 ~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~  183 (235)
T 2dho_A          137 NYLTRIHYKAQSDGIWGEHEIDYILLVRM-NVTLNPDPNEIKSYCYVS  183 (235)
T ss_dssp             EEEEEEEEEEECSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEEC
T ss_pred             EEEEEEEEeccCCCccceeEEEEEEEEEE-CCCCcCChHHEEEEEEEc
Confidence            333332211 11111  122444554443 334556778999999986

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.76  E-value=4.8e-19  Score=116.20  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=43.4

Q ss_pred             EcCCCcEEEEEecCCCCCCeeccceeecCCC-CHHHHHHHHHHHHhccCcccc
Q psy9980          28 LNDKNQVLVVKEFYRKRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEFH   79 (124)
Q Consensus        28 ~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~~   79 (124)
                      .+.++++||++|   .+|.|+||||++++|| |+++||+||+.||||+.+...
T Consensus        52 ~~~~~~vLl~~r---~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~  101 (212)
T 1u20_A           52 VPIRRVLLMMMR---FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV  101 (212)
T ss_dssp             EECCEEEEEEEE---TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred             EecCCEEEEEEe---CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcccc
Confidence            345568999888   5799999999999999 999999999999999998754

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.73  E-value=1.5e-17  Score=117.08  Aligned_cols=99  Identities=14%  Similarity=0.049  Sum_probs=68.5

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      +....+++++.+.+|++||+||...  ++|.|+||||++++| ++++|+.||+.||||+++....++....+....  ..
T Consensus       238 ~~~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h--~~  314 (369)
T 3fsp_A          238 KQVPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSH--LV  314 (369)
T ss_dssp             EEEEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSS--EE
T ss_pred             ceEEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcce--EE
Confidence            3445566777777789999999654  789999999999999 999999999999999998765554443222111  11


Q ss_pred             cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+.+|.+....+     ..|..+++|++
T Consensus       315 ~~~~~~~~~~~~~-----~~e~~~~~Wv~  338 (369)
T 3fsp_A          315 WQLTVFPGRLVHG-----GPVEEPYRLAP  338 (369)
T ss_dssp             EEEEEEEEEECCS-----SCCCTTEEEEE
T ss_pred             EEEEEEEEEEcCC-----CCCccccEEee
Confidence            2233333333222     35667888874

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.73  E-value=1.5e-17  Score=116.77  Aligned_cols=54  Identities=31%  Similarity=0.377  Sum_probs=46.6

Q ss_pred             CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980          30 DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR   85 (124)
Q Consensus        30 ~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~   85 (124)
                      ++.++||++|.  ..+.|.||||++++|||+++||+||++||||+++....++...
T Consensus        36 ~~~~vLLv~r~--~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~   89 (364)
T 3fjy_A           36 DSIEVCIVHRP--KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEV   89 (364)
T ss_dssp             TTEEEEEEEET--TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEE
T ss_pred             CceEEEEEEcC--CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceE
Confidence            33489999994  3599999999999999999999999999999998876666654

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.67  E-value=6.1e-16  Score=105.82  Aligned_cols=108  Identities=11%  Similarity=0.077  Sum_probs=72.8

Q ss_pred             cceeeeEEEEEEcCCC---cEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccc---eeEEEee
Q psy9980          17 AHTMIGAGAVVLNDKN---QVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFH---SVVAFRH   86 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~---~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~---~~~~~~~   86 (124)
                      .....++-+.+++.++   ++|++||+..   ++|.|+ .++|++++||++++||+||+.||+|+.....   ...+...
T Consensus       115 G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~  194 (300)
T 3dup_A          115 GVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAIT  194 (300)
T ss_dssp             TCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEE
T ss_pred             ceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEE
Confidence            3445667777777555   8999999533   899995 8999999999999999999999999987532   1222211


Q ss_pred             -cccCCcC-cccEEEEEEeccCC-ccCCCCcccccceeecC
Q psy9980          87 -THKAAFG-CSDIYFIVRLKPLT-QEITKDDREITESKWMD  124 (124)
Q Consensus        87 -~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~  124 (124)
                       .+....+ ...+.++|.+.... ..+.++++|+.+++|++
T Consensus       195 y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~  235 (300)
T 3dup_A          195 YCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWP  235 (300)
T ss_dssp             EEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEE
T ss_pred             EEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEEC
Confidence             1111111 22344555544332 23456789999999985

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.62  E-value=8.9e-16  Score=100.97  Aligned_cols=43  Identities=23%  Similarity=0.448  Sum_probs=38.3

Q ss_pred             cEEEEEecCCCCCCeeccceeecCCC-CHHHHHHHHHHHHhccCccc
Q psy9980          33 QVLVVKEFYRKRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEF   78 (124)
Q Consensus        33 ~iLl~~r~~~~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~   78 (124)
                      ++|++.|.   ++.|+||||++++|| ++++||+||++||||+++..
T Consensus        66 ~~ll~~r~---~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~  109 (217)
T 2xsq_A           66 AILMQMRF---DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAA  109 (217)
T ss_dssp             EEEEEEET---TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGG
T ss_pred             cEEEEEcc---CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCcc
Confidence            56777663   689999999999999 99999999999999998874

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.62  E-value=3e-15  Score=102.42  Aligned_cols=42  Identities=31%  Similarity=0.433  Sum_probs=38.5

Q ss_pred             cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980          33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT   76 (124)
Q Consensus        33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~   76 (124)
                      ++||++|..  .|.|.+|||++++||++.+||+||+.||||+.+
T Consensus       140 ~vLl~~r~~--~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNSL  181 (292)
T ss_dssp             EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGG
T ss_pred             EEEEEEecC--CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCcc
Confidence            599999964  489999999999999999999999999999983

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.60  E-value=6.8e-15  Score=97.51  Aligned_cols=61  Identities=28%  Similarity=0.314  Sum_probs=48.8

Q ss_pred             cceeeeEEEEEEcC--CC--cEEEEEecCC---CCCCeeccceeecCCCC--------------------HHHHHHHHHH
Q psy9980          17 AHTMIGAGAVVLND--KN--QVLVVKEFYR---KRPQWKLPGGYVEMSED--------------------IGEAAVREVF   69 (124)
Q Consensus        17 ~~~~~~~~~~v~~~--~~--~iLl~~r~~~---~~~~w~~PgG~~~~gEs--------------------~~~aa~RE~~   69 (124)
                      ..++.++.++++++  ++  ++||+||...   .+|.|.||||+++++|+                    +..||+||++
T Consensus         5 ~~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~   84 (232)
T 3qsj_A            5 TDIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETA   84 (232)
T ss_dssp             CCEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHH
Confidence            44566666666653  23  8999999654   48999999999999986                    5899999999


Q ss_pred             HHhccCcc
Q psy9980          70 EETNIRTE   77 (124)
Q Consensus        70 EE~Gl~~~   77 (124)
                      ||||+.+.
T Consensus        85 EE~Gl~l~   92 (232)
T 3qsj_A           85 EEIGWLLA   92 (232)
T ss_dssp             HHHSCCCS
T ss_pred             HHhCceec
Confidence            99999764

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=87.32  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=47.7

Q ss_pred             cceeeeEEEEEEcCC-C----------cEEEEEecCCCCCCeeccceeecCCC-CHHHHHHHHHHHHhcc-CcccceeEE
Q psy9980          17 AHTMIGAGAVVLNDK-N----------QVLVVKEFYRKRPQWKLPGGYVEMSE-DIGEAAVREVFEETNI-RTEFHSVVA   83 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~-~----------~iLl~~r~~~~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl-~~~~~~~~~   83 (124)
                      +..+.++-++++.++ +          .+|++.|   ..|.|+||||+||+|| |+++|+.||+.||+|+ .+....+..
T Consensus        18 ~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R---~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~   94 (214)
T 3kvh_A           18 PGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMR---FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLS   94 (214)
T ss_dssp             TTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEE---TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEE
T ss_pred             cCccEeeEEEEEcCCccccccccchhheEEEeee---eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEE
Confidence            345667777777643 2          2566666   6799999999999999 9999999999999997 566544443

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.37  E-value=4.2e-12  Score=87.72  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHh-ccCcccceeEEEeec
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEET-NIRTEFHSVVAFRHT   87 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~-Gl~~~~~~~~~~~~~   87 (124)
                      +++.+.+++.++ |+|||+ .   ..| |.+|||.++  ++..++|+||++||+ |+++....+++++..
T Consensus       182 p~~~vgaii~~~-g~vLL~-~---~~G-W~LPG~~~~--~~~~~~a~RE~~EEttGl~v~~~~L~~v~~~  243 (321)
T 3rh7_A          182 GEIRLGAVLEQQ-GAVFLA-G---NET-LSLPNCTVE--GGDPARTLAAYLEQLTGLNVTIGFLYSVYED  243 (321)
T ss_dssp             SCEEEEEEEESS-SCEEEB-C---SSE-EBCCEEEES--SSCHHHHHHHHHHHHHSSCEEEEEEEEEEEC
T ss_pred             CcceEEEEEEEC-CEEEEe-e---CCC-ccCCcccCC--CChhHHHHHHHHHHhcCCEEeeceEEEEEEc
Confidence            567778888876 799999 2   357 999988654  444459999999997 999999999988754

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.35  E-value=3.6e-12  Score=82.09  Aligned_cols=52  Identities=25%  Similarity=0.300  Sum_probs=41.7

Q ss_pred             eeeEEEEEE-cCCC--cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhcc
Q psy9980          20 MIGAGAVVL-NDKN--QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI   74 (124)
Q Consensus        20 ~~~~~~~v~-~~~~--~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl   74 (124)
                      +.+|.++++ +..+  ++||+|+   ..+.|.||||.+++||++++|+.||+.||+|+
T Consensus        58 R~sV~avil~~~~~~phVLLlq~---~~~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           58 RRTVEGVLIVHEHRLPHVLLLQL---GTTFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEE---ETTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             ceEEEEEEEEcCCCCcEEEEEEc---CCCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            445555444 3323  6999998   35699999999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-16
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	7e-16
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-15
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-14
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	6e-13
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	1e-12
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	2e-12
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-12
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	3e-12
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	9e-12
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-10
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-09
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	3e-09
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	4e-09
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	3e-08
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	5e-08
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	2e-07
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	3e-07
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	1e-06
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	1e-06
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-06
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	4e-06
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	6e-06
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-05
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	1e-04
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	5e-04

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 67.7 bits (165), Expect = 2e-16
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 21  IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
           +GAG VV N K +VL+++    +   W  P G+ E  E + EAAVREV+EET +R E   
Sbjct: 3   LGAGGVVFNAKREVLLLR---DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59

Query: 81  VVAFRHTHKAAFGCSDI-YFIVRLKPLTQEITKDDREITESKWMD 124
            +             ++ +F++R     +   + +  +T + W  
Sbjct: 60  PLYPTRYVNPKGVEREVHWFLMR----GEGAPRLEEGMTGAGWFS 100

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 67.1 bits (163), Expect = 7e-16
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 12  RIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFE 70
           RIP         GA++L+    Q ++VK  ++    W  P G ++  E   + A+REV+E
Sbjct: 1   RIPVR-------GAIMLDMSMQQCVLVKG-WKASSGWGFPKGKIDKDESDVDCAIREVYE 52

Query: 71  ETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           ET                        +Y I  +   T+  ++  +EI++ +W +
Sbjct: 53  ETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHN 106

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 66.7 bits (162), Expect = 1e-15
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 18  HTMIGAGAVVLNDKNQVLVVKEFYRK-----RPQWKLPGGYVEMSEDIGEAAVREVFEET 72
             +  AG V+LN++  +L+V+E            W +P G VE  E+  +AAVRE  EET
Sbjct: 10  VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEET 69

Query: 73  NIRTEFHSVVA-FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            +R      +  +              ++   +P          EI E+ ++ 
Sbjct: 70  GLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVS 122

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 63.7 bits (154), Expect = 1e-14
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 25  AVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
           A V+   ++ L+V+E  R    +   P G++E  E I +A  REV EET        +  
Sbjct: 7   AAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTG 66

Query: 84  FRHTHKAAFGCSDIYFIVRLKPLTQEIT-KDDREITESKWMD 124
             H   A+ G + + F    + ++ +   K D  I  + W  
Sbjct: 67  IYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFS 108

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 59.4 bits (143), Expect = 6e-13
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 18  HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
            T   A  +V   +N  +V+ +       + LPGG +E +E   EA  REV EE  I  E
Sbjct: 15  QTRYAAYIIVSKPENNTMVLVQ--APNGAYFLPGGEIEGTETKEEAIHREVLEELGISVE 72

Query: 78  FHSVVAFRHTHKAAFGCSDIYFIVR---LKPLTQEITKDDREITESKWMD 124
               +     +  +      Y+      +    +++++         W+ 
Sbjct: 73  IGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVA 122

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 59.5 bits (143), Expect = 1e-12
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 3   KWLPDDSESRIPNYAHTMIGAGAVVL-----NDKNQVLVVKEFYRKRP-QWKLPGGYVEM 56
           ++L    +  +P Y    +    V+L      D+ +VL+++         W LPGG+V  
Sbjct: 20  EFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNR 79

Query: 57  SEDIGEAAVREVFEETNIRTEFHSVVAFR-HTHKAAFGCSDIYFIVRLKPLTQEITKDDR 115
           +E   ++ +RE  EET +     ++      +         +  +  L  + +E      
Sbjct: 80  NESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGD 139

Query: 116 EITESKWMD 124
           +  E  W +
Sbjct: 140 DAKEVHWFN 148

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (139), Expect = 2e-12
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV 82
              V +   + +L+ +    +     +  G+VE+ E + +A  REV EE+ I+ +    V
Sbjct: 5   CIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYV 64

Query: 83  AFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
             +           +      +  + +I  D +E+ E+ W  
Sbjct: 65  TSQPWPF----PQSLMTAFMAEYDSGDIVIDPKELLEANWYR 102

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-12
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 25  AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84
             V N+  + L+++        W  P G+VE  ED  E A+R   EE  I     +++  
Sbjct: 22  PKVDNNAIEFLLLQASDGIH-HWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEG 80

Query: 85  RHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
                     +     IY++  +K    EI     E    +W+ 
Sbjct: 81  FKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLG 123

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 57.9 bits (139), Expect = 3e-12
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 10/130 (7%)

Query: 4   WLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGE 62
           +L  +  + +      ++    +V N + + L+ K   R     W +PGG V+  E +  
Sbjct: 3   FLRQEDFATVVRSTP-LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEA 61

Query: 63  AAVREVFEETNIR---TEFHSVVAFRHTHKAAFGCSD-----IYFIVRLKPLTQEITKDD 114
           A  R    E  +R   T       ++H +   F  +D     +    R +   +E+   D
Sbjct: 62  AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPD 121

Query: 115 REITESKWMD 124
            +  + +W+ 
Sbjct: 122 EQHDDYRWLT 131

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 9e-12
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 10  ESRIPNYAHTMIGAGAVVLNDKNQ---VLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVR 66
           ++R  +       A  +    +++   +LV     R   +W +PGG +E  E+   AAVR
Sbjct: 1   QTRTYDGDGYKKRAACLCFRSESEEEVLLVSS--SRHPDRWIVPGGGMEPEEEPSVAAVR 58

Query: 67  EVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           EV EE  ++     +V      +         +++ +  + ++         + +W  
Sbjct: 59  EVCEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFK 114

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 53.0 bits (126), Expect = 2e-10
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 13/115 (11%)

Query: 20  MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR---T 76
           MI    V++ +  +VL+VK   ++   +  PGG+VE +E   EA  RE  EET I     
Sbjct: 1   MIVTSGVLVEN-GKVLLVKH--KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57

Query: 77  EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQ-------EITKDDREITESKWMD 124
            F   +   +  +       +  +V+    T         + +   ++   +W+D
Sbjct: 58  GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWID 112

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 50.6 bits (120), Expect = 2e-09
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 22/124 (17%)

Query: 22  GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
             G  ++N+  ++            W++P G ++  ED   AA+RE+ EET + +     
Sbjct: 16  NVGICLMNNDKKIFAASRLDIPD-AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIA 74

Query: 82  VAFRHTH----------------KAAFGCSDIYFIVRLKPLTQEIT-----KDDREITES 120
                                      G +  +F+ +     QEI       +  E  E 
Sbjct: 75  EVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEW 134

Query: 121 KWMD 124
            W+ 
Sbjct: 135 SWVT 138

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 3e-09
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 25  AVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
            V++    +VL+  +       +W   GG V+  E I + A RE+ EE+ +     ++  
Sbjct: 9   LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL--TVDALHK 66

Query: 84  FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
                    G  ++  +      + + T  + +     W  
Sbjct: 67  VGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQ 107

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 49.3 bits (117), Expect = 4e-09
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 22  GAGAVVLNDKNQVLVVKEFY--RKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
            A AV+   + ++L V++          ++P G +E  ED  EAA RE+ E+T +  +  
Sbjct: 25  PAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLT 84

Query: 80  SVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            + ++  +       + ++    LK    E   D+ E  E  WM 
Sbjct: 85  YLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMR 127

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (110), Expect = 3e-08
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78
             + + N K Q+LV +    K+           G+ ++ E   +A +R    E  +    
Sbjct: 5   FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 64

Query: 79  HSVVAFRHTHKAAF---GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
              +     ++A        +    V     T  +  +D E+ + +W D
Sbjct: 65  PESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD 113

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 5e-08
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 23  AGAVVLNDKN-----QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
           +G  +++  +     Q + +K   +   +W +PGG V+  E I     RE  EE     +
Sbjct: 125 SGNKIMHPVSGKHILQFVAIKR--KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ 182

Query: 78  FHSVVAFRHTHK 89
             S        K
Sbjct: 183 KTSAEKREIEEK 194

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 3/122 (2%)

Query: 5   LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFY--RKRPQWKLPGGYVEMSEDIGE 62
             +           T   A  +V    + +++++E+    +  +     G ++  E + E
Sbjct: 32  FSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYE 91

Query: 63  AAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKW 122
           AA RE+ EE             + +   ++  S +  +V      + +  D+ E      
Sbjct: 92  AANRELKEEVGFGAN-DLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVR 150

Query: 123 MD 124
             
Sbjct: 151 WP 152

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 20  MIGAGAVVLNDKNQVLVVKEFYRKR--PQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
           +     +   +  +V++            +  PGG+VE  E   E+ +RE++EET +  +
Sbjct: 9   LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQ 68

Query: 78  FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
              +V          G   I    +    +  +     E  E  W+ 
Sbjct: 69  NPQLVGI-KNWPLDTGGRYIVICYKATEFSGTL--QSSEEGEVSWVQ 112

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 1e-06
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRP--QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
           A  ++ N+ N++ + +         + + PGG +EM E   +A VRE+ EE  I  +  S
Sbjct: 7   AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFS 66

Query: 81  VVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           +             +  +++V       E     +E    +WM 
Sbjct: 67  LFEKLEYEFPDRHITLWFWLVE----RWEGEPWGKEGQPGEWMS 106

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 14  PNYAHTMIGAGAVVL---NDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVF 69
            +     +G   ++      +  +L++K  +     +W L GG+V+  E + +AA R + 
Sbjct: 4   SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLA 63

Query: 70  EETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
           E T +   +   V          G   +           E  ++  +   + W++
Sbjct: 64  ELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVN 118

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.2 bits (98), Expect = 1e-06
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 23  AGAVVL---NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
           AG V+      K + L+++  Y     W  P G+V+  ED  +AA+RE  EE NI  E  
Sbjct: 5   AGLVIYRKLAGKIEFLLLQASYPPH-HWTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 63

Query: 80  SVVAFRHTHKAAFGCSDIYFI--VRLKPLTQEITKDDREITESKWMD 124
           ++    H             +     K    +  +   E    KW +
Sbjct: 64  TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCE 110

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.6 bits (97), Expect = 4e-06
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 8  DSESRIPNY---AHTMI-----GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
          +   ++  Y    H ++           +  +  +L++    R   +   PGG+V+  + 
Sbjct: 11 EESLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMM---RFDGRLGFPGGFVDTRDI 67

Query: 60 IGEAAV-REVFEETNIRTEFHSVVAFRH 86
            E  + RE+ EE         V    +
Sbjct: 68 SLEEGLKRELEEELGPALATVEVTEDDY 95

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 41.4 bits (96), Expect = 6e-06
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 8/122 (6%)

Query: 10  ESRIPNYAHTMIGAGAVVL-----NDKNQVLVVKEFYRKRP---QWKLPGGYVEMSEDIG 61
             R            A VL         +VL+            Q   PGG ++  E   
Sbjct: 18  SGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT 77

Query: 62  EAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESK 121
           +AA+RE  EE  +     +++          G      + R+ P   +  +   E+ +  
Sbjct: 78  QAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQII 137

Query: 122 WM 123
             
Sbjct: 138 TP 139

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 23  AGAVVLNDKNQVLVVKEFYRKRPQWKL----PGGYVEMSEDIGEAAVREVFEETNIRTEF 78
             A + N + Q+ + +    K           GG V+  E   EA  RE  EE N+  + 
Sbjct: 31  VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 90

Query: 79  HSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
            S      +          +  V           +  +I+  +W+ 
Sbjct: 91  LSWRPL-ASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLT 135

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 7/107 (6%)

Query: 22  GAGAVVLNDKNQVLVVK----EFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
               VV +   ++LV +    + +         GG V+  E + E+A RE  EE  I   
Sbjct: 32  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 91

Query: 78  FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
             +     +            F              + E++E  W+ 
Sbjct: 92  PFAEHGQFYFEDKNCRVWGALFSCVSH---GPFALQEDEVSEVCWLT 135

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 13/133 (9%)

Query: 5   LPDDSESRIPNYAHTMIGAGAVVL---NDKNQVLVVKEFY-------RKRPQWKLPGGYV 54
           L +   S          G  AV+L     +++V+++++               ++  G +
Sbjct: 40  LFNGQMSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMI 99

Query: 55  EMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLT---QEIT 111
           E  E + + A RE  EE  +  +    V                 +  +   T       
Sbjct: 100 EEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGL 159

Query: 112 KDDREITESKWMD 124
            D+ E      + 
Sbjct: 160 ADENEDIRVHVVS 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.92
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.92
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.92
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.92
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.91
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.91
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.91
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.9
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.9
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.89
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.89
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.89
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.89
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.89
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.89
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.88
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.86
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.86
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.86
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.86
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.84
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.84
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.83
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.82
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.74
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.71
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.64
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.58
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.57
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.48

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.92  E-value=1.9e-25  Score=137.30  Aligned_cols=106  Identities=25%  Similarity=0.304  Sum_probs=77.0

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCccc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSD   96 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   96 (124)
                      ++.++++++|.++ |++||++|... ..+.|.||||+++.|||+.+||+||++||||+++....++.+............
T Consensus         1 ~P~v~va~ii~~~-~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (146)
T d2b0va1           1 KPNVTVAAVIEQD-DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY   79 (146)
T ss_dssp             CCEEEEEEECEET-TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             CCeEEEEEEEEeC-CEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEE
Confidence            3566777777665 89999999655 678999999999999999999999999999999987777766554444443333


Q ss_pred             EEEEEEeccCCcc-CCCCcccccceeecC
Q psy9980          97 IYFIVRLKPLTQE-ITKDDREITESKWMD  124 (124)
Q Consensus        97 ~~~~~~~~~~~~~-~~~~~~e~~~~~W~~  124 (124)
                      +.++|.+...... ....++|+.+++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~  108 (146)
T d2b0va1          80 LRFTFSGQVVSFDPDRKLDTGIVRAAWFS  108 (146)
T ss_dssp             EEEEEEEEEEEECTTSCCCTTEEEEEEEE
T ss_pred             EEEEEEEEeecCCCCCCCCcceeEEEEee
Confidence            4444443332222 233467889999985

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.3e-25  Score=133.73  Aligned_cols=101  Identities=19%  Similarity=0.256  Sum_probs=75.4

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEE
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY   98 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   98 (124)
                      ...++.+++.++ +++||+||+...+|.|.+|||++++|||+++||.||++||||+++....+++......    ...+.
T Consensus         2 i~paViv~i~~~-~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~----~~~~~   76 (131)
T d1vk6a2           2 IAPCIIVAIRRD-DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF----PQSLM   76 (131)
T ss_dssp             CEEEEEEEEEET-TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET----TEEEE
T ss_pred             cccEEEEEEEeC-CEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCc----CceEE
Confidence            345666666665 7999999865467899999999999999999999999999999988766666543221    22344


Q ss_pred             EEEEeccCCccCCCCcccccceeecC
Q psy9980          99 FIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        99 ~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +.|.+....+.+..++.|+.+++|++
T Consensus        77 ~~f~~~~~~~~~~~~~~E~~~~~W~~  102 (131)
T d1vk6a2          77 TAFMAEYDSGDIVIDPKELLEANWYR  102 (131)
T ss_dssp             EEEEEEEEECCCCCCTTTEEEEEEEE
T ss_pred             EEEEEEEcCCcccCCCccEEEEEEEc
Confidence            44444444555666778999999984

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.1e-24  Score=133.78  Aligned_cols=107  Identities=19%  Similarity=0.335  Sum_probs=77.5

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEeec-cc----
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRHT-HK----   89 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~~-~~----   89 (124)
                      .+.+++.++|.+++|++||+||+.. ++|.|.+|||++++|||+.+||+||+.||||+++...  ........ +.    
T Consensus        16 ~p~~~v~~vi~~~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   95 (160)
T d1ryaa_          16 TPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   95 (160)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred             CCEEEEEEEEEeCCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEecccccc
Confidence            3467888999998889999999655 7899999999999999999999999999999987643  22322211 11    


Q ss_pred             -CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          90 -AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        90 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                       .....+.+.+++.+..........++|+.+++|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~  131 (160)
T d1ryaa_          96 GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLT  131 (160)
T ss_dssp             BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEEC
T ss_pred             CCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEE
Confidence             11112224455555555555555678899999985

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.92  E-value=8.5e-25  Score=134.79  Aligned_cols=111  Identities=16%  Similarity=0.272  Sum_probs=79.2

Q ss_pred             CCCcceeeeEEEEEEc---CCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980          14 PNYAHTMIGAGAVVLN---DKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK   89 (124)
Q Consensus        14 ~~~~~~~~~~~~~v~~---~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~   89 (124)
                      ...+++.++|.++|+.   ++.++||++|+.. ..|.|.+|||++++|||+++||+||+.||||+++....++..+....
T Consensus         4 ~~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   83 (147)
T d2fb1a2           4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAID   83 (147)
T ss_dssp             TTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTT
T ss_pred             CCCCCcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCc
Confidence            4457778888787763   3237999999654 67999999999999999999999999999999988777776654433


Q ss_pred             CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .......+.++|.+...........+|..+++|++
T Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~  118 (147)
T d2fb1a2          84 RDPGERVVSIAYYALININEYDRELVQKHNAYWVN  118 (147)
T ss_dssp             SSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEE
T ss_pred             ccCCCceEEEEEEEEecCCcccCCCcchhheEEec
Confidence            33333334444444433333333556788899974

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.91  E-value=9.9e-24  Score=131.10  Aligned_cols=108  Identities=27%  Similarity=0.327  Sum_probs=76.3

Q ss_pred             CcceeeeEEEEEEcCCCcEEEEEecCC-----CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC
Q psy9980          16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-----KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA   90 (124)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-----~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~   90 (124)
                      .+....++++++++.+|++||++|+..     ..|.|++|||++++||++.+||+||++||||+++....++...... .
T Consensus         8 ~p~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~-~   86 (158)
T d1sjya_           8 VPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR-F   86 (158)
T ss_dssp             CCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEE-C
T ss_pred             CCCceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEE-C
Confidence            344455788888888899999999532     4689999999999999999999999999999999877777654322 2


Q ss_pred             CcCcccEEEEEEeccCC--ccCCCCcccccceeecC
Q psy9980          91 AFGCSDIYFIVRLKPLT--QEITKDDREITESKWMD  124 (124)
Q Consensus        91 ~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~  124 (124)
                      ........++|.+....  .......+|+.+++|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~  122 (158)
T d1sjya_          87 PDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVS  122 (158)
T ss_dssp             TTSCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEEC
T ss_pred             CCCCEEEEEEEEEEEcCCcccCCCCCcceEEEEEEE
Confidence            22222333333333222  22223457899999985

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.1e-23  Score=126.69  Aligned_cols=99  Identities=29%  Similarity=0.410  Sum_probs=70.6

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF   99 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   99 (124)
                      .++++++++++++++|+++++   .|.|.+|||++++|||+.+||+||++||||+++.....+....+... .......+
T Consensus         2 ~v~agavv~~~~~~vLl~~~~---~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~-~~~~~~~~   77 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDR---MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNP-KGVEREVH   77 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECT---TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECT-TSCEEEEE
T ss_pred             EEEEEEEEEECCCEEEEEEcC---CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccC-CCeEEEEE
Confidence            578999999988999999874   58999999999999999999999999999999886655554332222 22222222


Q ss_pred             EEEeccCCccCCCCcccccceeecC
Q psy9980         100 IVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus       100 ~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +|.+... ..+. .++|+.+++|++
T Consensus        78 ~~~~~~~-~~~~-~~~e~~~~~W~~  100 (126)
T d1vcda1          78 WFLMRGE-GAPR-LEEGMTGAGWFS  100 (126)
T ss_dssp             EEEEEEE-SCCC-CCTTCCEEEEEC
T ss_pred             EEEEEEc-CCCC-CCccceEEEEEE
Confidence            2322221 2222 356788999986

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.3e-24  Score=132.94  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=74.8

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc--CCcC
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK--AAFG   93 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~--~~~~   93 (124)
                      +.++.++|+|++|++||+||+..   ++|.|++ |||++++|||+.+||+||+.||||+++.....+.....+.  ....
T Consensus         2 Hra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~   81 (153)
T d1hzta_           2 HLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSG   81 (153)
T ss_dssp             EECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTS
T ss_pred             ceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccccc
Confidence            45788999998899999999533   7899987 9999999999999999999999999987654443211111  1111


Q ss_pred             --cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          94 --CSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        94 --~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                        ...+++++... ....+.++++|+.+++|++
T Consensus        82 ~~~~~~~~~~~~~-~~~~~~~~~~Ev~~~~W~~  113 (153)
T d1hzta_          82 IVENEVCPVFAAR-TTSALQINDDEVMDYQWCD  113 (153)
T ss_dssp             CEEEEECCEEEEE-BCSCCCCCTTTEEEEEEEC
T ss_pred             ccceeEEEEEEEe-eCCCccCChhheeEEEEee
Confidence              12233333333 3445667778999999986

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.90  E-value=4.4e-23  Score=128.84  Aligned_cols=105  Identities=18%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC   94 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   94 (124)
                      .+.++.++++|++|++||++|...   ++|.|++| ||++++|||+.+||+||+.||||+++....+.............
T Consensus        27 ~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~  106 (162)
T d2o5fa1          27 RVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL  106 (162)
T ss_dssp             GSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSC
T ss_pred             eEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccc
Confidence            445788899998899999998533   78999887 99999999999999999999999999876666555443333334


Q ss_pred             ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+++++.+... +.+.++++|+.++.|++
T Consensus       107 ~~~~~~~~~~~~-~~~~~~~~Ev~~~~W~~  135 (162)
T d2o5fa1         107 SSFMCVYELRSD-ATPIFNPNDISGGEWLT  135 (162)
T ss_dssp             SSEEEEEEEECS-SCCCCCTTTCSEEEEEC
T ss_pred             eEEEEEEEEecC-CCccCChhHeeEEEEee
Confidence            445555555433 45566778999999986

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-23  Score=129.33  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             eeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          19 TMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        19 ~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      +++++.+++.++ +++||++|+.. ..|.|.+|||++++|||+.+||+||++||||+++....++...............
T Consensus         4 ~r~~~~v~i~~~-~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
T d1irya_           4 SRLYTLVLVLQP-QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMD   82 (156)
T ss_dssp             CEEEEEECEECS-SEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCEEE
T ss_pred             cEEEEEEEEEEC-CEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEEEE
Confidence            455666666665 89999999655 6799999999999999999999999999999998866666554333222222223


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ++++.+....+.  +...+..+++|++
T Consensus        83 ~~~~~~~~~~~~--~~~~ee~~~~W~~  107 (156)
T d1irya_          83 VHVFCTDSIQGT--PVESDEMRPCWFQ  107 (156)
T ss_dssp             EEEECCCCBCSC--CCCCSSEEEEEEE
T ss_pred             EEEEEEEeecCc--ccCCchhheEEeE
Confidence            333333333222  2233446678874

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.89  E-value=2.7e-23  Score=133.96  Aligned_cols=114  Identities=20%  Similarity=0.321  Sum_probs=78.1

Q ss_pred             CCCCCCCcceeeeEEEEEE--cCC-C--cEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE
Q psy9980          10 ESRIPNYAHTMIGAGAVVL--NDK-N--QVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA   83 (124)
Q Consensus        10 ~~~~~~~~~~~~~~~~~v~--~~~-~--~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~   83 (124)
                      ++.++.++++.+++.++|+  +.+ +  +|||+||+.. +.|.|.+|||++++|||+.+||+||++||||+.+....+..
T Consensus        27 ~~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~  106 (202)
T d2fmla2          27 QQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ  106 (202)
T ss_dssp             TSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred             cccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeee
Confidence            4445667777888777765  332 2  7999999655 78999999999999999999999999999999987655544


Q ss_pred             Eeecc-cCCc-CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          84 FRHTH-KAAF-GCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        84 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +.... .... ....+.+.+.+.... ......+|+.+++||+
T Consensus       107 ~~~~~~~~r~~~~~~i~~~~~~~~~~-~~~~~~~e~~~~~Wf~  148 (202)
T d2fmla2         107 LHSFSRPDRDPRGWVVTVSYLAFIGE-EPLIAGDDAKEVHWFN  148 (202)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCC-CCCCCCTTEEEEEEEE
T ss_pred             eeecccCCccccceEEEEEEEEEeCC-CCcCCCcceeeEEEEe
Confidence            43221 1111 222333344443333 3334567889999985

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.89  E-value=3.7e-23  Score=129.54  Aligned_cols=61  Identities=23%  Similarity=0.407  Sum_probs=54.3

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH   79 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~   79 (124)
                      ..+.+|+++|+|+++++||+||.. .+|.|.+|||+++.|||+++||+||++||||+++...
T Consensus        12 ~yR~~Vg~vI~n~~~~vLL~kR~~-~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~   72 (165)
T d1jkna_          12 GYRRNVGICLMNNDKKIFAASRLD-IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEV   72 (165)
T ss_dssp             SEEEEEEEEEECTTSCEEEEEESS-STTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEE
T ss_pred             CccccEEEEEEeCCCEEEEEEEcC-CCCcccCccceEcCCCChhHHHHHHHHHhhccccccc
Confidence            356788999999889999999964 4689999999999999999999999999999987643

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.3e-22  Score=126.60  Aligned_cols=102  Identities=19%  Similarity=0.136  Sum_probs=74.5

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      +.++.++++|++|++||++|...   ++|.|++| ||++++|||+++||+||++||||++......+......  .....
T Consensus        30 h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~--~~~~~  107 (161)
T d2fkba1          30 HRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFE--DKNCR  107 (161)
T ss_dssp             EEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEE--ETTEE
T ss_pred             EeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEee--cCCcE
Confidence            45788889998899999999543   78999886 89999999999999999999999987655444433211  11122


Q ss_pred             cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....+|.+. ..+.+.++++|+.+++|++
T Consensus       108 ~~~~~~~~~-~~~~~~~~~~Ev~~~~w~~  135 (161)
T d2fkba1         108 VWGALFSCV-SHGPFALQEDEVSEVCWLT  135 (161)
T ss_dssp             EEEEEEEEE-CCCCCCCCTTTEEEEEEEC
T ss_pred             EEEEEEEEE-ECCCCcCChhHeeEEEEEe
Confidence            233333333 3345566788999999986

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=5.2e-23  Score=127.64  Aligned_cols=103  Identities=19%  Similarity=0.344  Sum_probs=70.6

Q ss_pred             eeeeEEEEEEc-CCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          19 TMIGAGAVVLN-DKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        19 ~~~~~~~~v~~-~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      +.++..++|.+ +++++||++|...  ..|.|+||||++++|||+.+||+||++||||+++....++.+..... .....
T Consensus         7 ~~~~~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~-~~~~~   85 (155)
T d2b06a1           7 TILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPL-DTGGR   85 (155)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEEC-TTSCE
T ss_pred             EEEEEEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeec-CCCCe
Confidence            34444455555 6568999888543  34679999999999999999999999999999998877777654332 23333


Q ss_pred             cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .+.++|.+....+.  +.+.|..+++|++
T Consensus        86 ~~~~~~~~~~~~~~--~~~~e~~~~~W~~  112 (155)
T d2b06a1          86 YIVICYKATEFSGT--LQSSEEGEVSWVQ  112 (155)
T ss_dssp             EEEEEEEECEEEEC--CCCBTTBEEEEEE
T ss_pred             EEEEEEEEEecCCc--cCCCchheEEEEE
Confidence            44455555433333  3356778899974

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.1e-23  Score=125.76  Aligned_cols=100  Identities=21%  Similarity=0.310  Sum_probs=71.0

Q ss_pred             eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      .+++ +++.+.++++||+||...  .+|.|+||||+++.|||+.+||.||++||||+++....++....+...  .....
T Consensus         5 ~vav-~ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~--~~~~~   81 (129)
T d1puna_           5 QIAV-GIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFP--DRHIT   81 (129)
T ss_dssp             EEEE-EECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECS--SEEEE
T ss_pred             EEEE-EEEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeeccc--cccee
Confidence            3443 456666689999999544  689999999999999999999999999999999986665554432211  12233


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      .++|.+....+.+  ...|+.+++|++
T Consensus        82 ~~~~~~~~~~~~~--~~~E~~~~~W~~  106 (129)
T d1puna_          82 LWFWLVERWEGEP--WGKEGQPGEWMS  106 (129)
T ss_dssp             EEEEECCCCSSCC--CTTSSSCCEEEC
T ss_pred             EEEEEEeeccCcC--CCCccceEEEEE
Confidence            4445554444433  346778899985

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.89  E-value=1.3e-22  Score=129.31  Aligned_cols=122  Identities=16%  Similarity=0.171  Sum_probs=74.3

Q ss_pred             ccCCCCCCCCCCCCcceeeeEEEEEEc-CCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980           3 KWLPDDSESRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF   78 (124)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~   78 (124)
                      .|+..............+.++.+++.+ ++.++||.||+..   .+|.|+||||+++.||++.+||+||++||||++...
T Consensus        15 ~~l~~~~~~~~~~~~~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~   94 (187)
T d1nqza_          15 LWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAA   94 (187)
T ss_dssp             CCBCC----------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGG
T ss_pred             hhcccCccccccCCCCCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccce
Confidence            455555554444222223344444553 4457999999644   689999999999999999999999999999999988


Q ss_pred             ceeEEEeecccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          79 HSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ..+++....+....+.....+++............++|+.++.|++
T Consensus        95 ~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~~~~~~~~EV~~v~~vp  140 (187)
T d1nqza_          95 VTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPT  140 (187)
T ss_dssp             CEEEEECCCEEETTTEEEEEEEEEECGGGGGGCCCCTTEEEEECCB
T ss_pred             eEEeecccceeeccccEEEEEEEEECCccccccccCCcceEEEecc
Confidence            7777765433222222212234444333333344567889999975

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.88  E-value=3.4e-23  Score=128.01  Aligned_cols=101  Identities=22%  Similarity=0.331  Sum_probs=62.0

Q ss_pred             eEEEEEEcCC-CcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980          22 GAGAVVLNDK-NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI  100 (124)
Q Consensus        22 ~~~~~v~~~~-~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (124)
                      .+.+++++.+ +++||+|+.. .++.|.||||+++.|||+.+||+||+.||||+++................ ....+++
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~-~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~-~~~~~~~   81 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWK-ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRG-QNVRLYI   81 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESS-TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETT-EEEEEEE
T ss_pred             EEEEEEEECCCCEEEEEEEeC-CCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecccC-ceEEEEE
Confidence            4566777743 6899999853 57899999999999999999999999999999886432221111111111 1222333


Q ss_pred             EEeccCCccC-CCCcccccceeecC
Q psy9980         101 VRLKPLTQEI-TKDDREITESKWMD  124 (124)
Q Consensus       101 ~~~~~~~~~~-~~~~~e~~~~~W~~  124 (124)
                      +......... ..+.+|+.++.|++
T Consensus        82 ~~~~~~~~~~~~~~~~Ei~~~~W~~  106 (151)
T d2a6ta2          82 IPGISLDTRFESRTRKEISKIEWHN  106 (151)
T ss_dssp             ECCCCTTCCCC------EEEEEEEE
T ss_pred             EEEeccCCcccccCCCccceEEEEE
Confidence            3222222222 23567899999984

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=3.5e-21  Score=116.69  Aligned_cols=102  Identities=27%  Similarity=0.308  Sum_probs=65.7

Q ss_pred             eeEEEEEEc---CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc-C-CcCcc
Q psy9980          21 IGAGAVVLN---DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK-A-AFGCS   95 (124)
Q Consensus        21 ~~~~~~v~~---~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-~-~~~~~   95 (124)
                      .++++++++   ++.++||++|+. .+|.|.+|||++++|||+.+||+||++||||+++............. . .....
T Consensus         3 raag~vv~~~~~~~~~~Ll~~r~~-~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T d1ktga_           3 KAAGLVIYRKLAGKIEFLLLQASY-PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKP   81 (137)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS-TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEcC-CCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCcce
Confidence            345555554   223689998864 46899999999999999999999999999999987655444322211 1 11112


Q ss_pred             cEEEEEEecc-CCccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKP-LTQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~~~~e~~~~~W~~  124 (124)
                      ....++.... ...... ..+|+.+++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~  110 (137)
T d1ktga_          82 KSVKYWLAKLNNPDDVQ-LSHEHQNWKWCE  110 (137)
T ss_dssp             EEEEEEEEEECSCCCCC-CCTTEEEEEEEC
T ss_pred             EEEEEEEEEecCCCCcC-CCcceEEEEEEE
Confidence            2222232222 222333 356889999986

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.3e-21  Score=120.53  Aligned_cols=103  Identities=21%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             ceeeeEEEEEEcCCCcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980          18 HTMIGAGAVVLNDKNQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS   95 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   95 (124)
                      ....+++++++++ +++||+++ +++ ....|+||||++|+||++++||+||+.||||+.++...+..........+.  
T Consensus        22 ~~~~aV~vl~~~~-~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~l~~~~~~~g~~~~--   98 (158)
T d1v8ya_          22 EHKPAVAVIALRE-GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSYFVSPGFTDE--   98 (158)
T ss_dssp             EECCEEEEEEEET-TEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEESCTTTBCC--
T ss_pred             ecCCEEEEEEEEC-CEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceeeeecceecCCCcceE--
Confidence            3345677777765 79999987 444 678999999999999999999999999999998765555544322222222  


Q ss_pred             cEEEEEEeccC-CccCCCCcccccceeecC
Q psy9980          96 DIYFIVRLKPL-TQEITKDDREITESKWMD  124 (124)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~e~~~~~W~~  124 (124)
                      .+ ++|.+... ......+++|..++.|++
T Consensus        99 ~~-~~f~a~~~~~~~~~~d~~E~~ev~w~~  127 (158)
T d1v8ya_          99 KT-HVFLAENLKEVEAHPDEDEAIEVVWMR  127 (158)
T ss_dssp             EE-EEEEEEEEEECC--------CEEEEEC
T ss_pred             EE-EEEEEccccccccCCCCCeeEEEEEEE
Confidence            22 22222221 223344566888999986

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.3e-22  Score=120.79  Aligned_cols=102  Identities=20%  Similarity=0.346  Sum_probs=67.7

Q ss_pred             eeeEEEEEEc--CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980          20 MIGAGAVVLN--DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI   97 (124)
Q Consensus        20 ~~~~~~~v~~--~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   97 (124)
                      +..+++++++  +++.+||++++. .+|.|.+|||++++|||+++||+||++||||+.+....+........ .. ....
T Consensus        11 r~~a~~vv~~~~~~~~~lL~~~~~-~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~-~~~~   87 (135)
T d2fvva1          11 KKRAACLCFRSESEEEVLLVSSSR-HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE-RK-HRTY   87 (135)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSS-CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT-TT-EEEE
T ss_pred             ceEEEEEEEEecCCCEEEEEEEeC-CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-CC-ccEE
Confidence            4445556655  445667776643 57899999999999999999999999999999988777766553322 12 2222


Q ss_pred             EEEEEeccCCccCCCCcccccceeecC
Q psy9980          98 YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ++.+.+...........+|+.+++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~e~~~~~W~~  114 (135)
T d2fvva1          88 VYVLIVTEVLEDWEDSVNIGRKREWFK  114 (135)
T ss_dssp             EEEEEEEEECSSCHHHHHHCCCEEEEE
T ss_pred             EEEEEEEeecCCCCCCCCceeEEEEEE
Confidence            233333332223233456778899985

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.86  E-value=1.5e-21  Score=119.78  Aligned_cols=105  Identities=21%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             cceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc--
Q psy9980          17 AHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC--   94 (124)
Q Consensus        17 ~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~--   94 (124)
                      .+.+.+++++|.++++++||..++  ..|.|.||||++++|||+.+||+||+.||||+++....++............  
T Consensus        14 y~~r~~~~~vi~~~~~~~lll~~~--~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   91 (147)
T d2azwa1          14 YQTRYAAYIIVSKPENNTMVLVQA--PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT   91 (147)
T ss_dssp             CEECCEEEEECEEGGGTEEEEEEC--TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTE
T ss_pred             cCCCCeEEEEEEECCCCEEEEEEc--CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccCCc
Confidence            345667888888865665555553  3589999999999999999999999999999998876666554332221111  


Q ss_pred             --ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          95 --SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        95 --~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                        ..+.+++.+...... ....+|+.+++|++
T Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~  122 (147)
T d2azwa1          92 AYYNPGYFYVANTWRQL-SEPLERTNTLHWVA  122 (147)
T ss_dssp             EEEEEEEEEEEEEEEEC-SSCC-CCSEEEEEC
T ss_pred             eEEEEEEEEEEEecccc-CCCCccceEEEEEE
Confidence              123334444333333 23456788999985

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.4e-21  Score=122.58  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=71.5

Q ss_pred             CCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeE
Q psy9980           5 LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV   82 (124)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~   82 (124)
                      +|++....+.........+++++-..+++++|+++ +++ ....|+||||++|+||++++||+||+.||||+++....++
T Consensus        32 ~p~G~~~~~~~~~~~~~~~v~vi~~~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l  111 (186)
T d1vhza_          32 FSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFL  111 (186)
T ss_dssp             CTTSCEEEEEEECCCCCCEEEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEE
T ss_pred             cCCCCEEEEEEEEeCCCcEEEEEEccCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceec
Confidence            45554433332222222233333233468888876 444 5677999999999999999999999999999998876666


Q ss_pred             EEeecccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          83 AFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +..+......+....+++.. .........+.+|..+..|+|
T Consensus       112 ~~~~~~~g~~~~~~~~~~a~-~~~~~~~~~de~E~~~~~~~~  152 (186)
T d1vhza_         112 KKLSMAPSYFSSKMNIVVAQ-DLYPESLEGDEPEPLPQVRWP  152 (186)
T ss_dssp             EEEECCTTTCCCEEEEEEEE-EEEECCCCCCCSSCCCEEEEE
T ss_pred             ceeeccccccceEEEEEEEE-ecccccCCCCCCcEEEEEEEe
Confidence            65433322222222222221 112223344556778888874

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=4.3e-21  Score=123.47  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=69.7

Q ss_pred             CCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEe-cCC-CCCCeeccceeec-CCCCHHHHHHHHHHHHhccCccccee
Q psy9980           5 LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKE-FYR-KRPQWKLPGGYVE-MSEDIGEAAVREVFEETNIRTEFHSV   81 (124)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r-~~~-~~~~w~~PgG~~~-~gEs~~~aa~RE~~EE~Gl~~~~~~~   81 (124)
                      +|++....+. ......+++++++++++++||+++ +++ ....|+||+|.++ +||++++||+||+.||||+.+.....
T Consensus        24 ~pdG~~~~~~-~v~~~~~V~vl~~~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~  102 (202)
T d1mqea_          24 MPGGGIVTRE-VVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQV  102 (202)
T ss_dssp             -----CEEEE-EEEECCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEE
T ss_pred             CCCCCEEEEE-EEEcCCeEEEEEECCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceE
Confidence            4555444433 233445677777788889999987 554 5557999999999 79999999999999999999876666


Q ss_pred             EEEeecccCCcCcccEEEEEEeccCCccCCC-CcccccceeecC
Q psy9980          82 VAFRHTHKAAFGCSDIYFIVRLKPLTQEITK-DDREITESKWMD  124 (124)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~  124 (124)
                      +..............++|+............ ..+|..++.|+|
T Consensus       103 l~~~~~~~g~~~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~  146 (202)
T d1mqea_         103 LVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYP  146 (202)
T ss_dssp             EEEECSCTTTBCCCEEEEEEEEEEECCC----------CEEEEE
T ss_pred             eeeeeccCccCCcEEEEEEEEeccccCCCCCCCccceEEEEEEE
Confidence            6654333222222223223222222222222 334456788875

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=1.6e-21  Score=120.03  Aligned_cols=58  Identities=34%  Similarity=0.365  Sum_probs=47.8

Q ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeE
Q psy9980          22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV   82 (124)
Q Consensus        22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~   82 (124)
                      .++++|+++ |++||++|+  ..|.|.+|||++++||++.+||+||++||||+++......
T Consensus         3 ~a~~vi~~d-~kvLl~~r~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~   60 (152)
T d1k2ea_           3 VTSGVLVEN-GKVLLVKHK--RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT   60 (152)
T ss_dssp             EEEEECEET-TEEEEEECT--TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCC
T ss_pred             EEEEEEEEC-CEEEEEEEc--CCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEE
Confidence            344555554 799999985  4689999999999999999999999999999998754443

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.5e-20  Score=113.15  Aligned_cols=102  Identities=24%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             eeEEEEEE---------cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe---ecc
Q psy9980          21 IGAGAVVL---------NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR---HTH   88 (124)
Q Consensus        21 ~~~~~~v~---------~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~---~~~   88 (124)
                      .++.++++         +++.++||.++.. ..+.|.+|||++++|||+.+||+||++||||+.+....+....   ..+
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~-~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~   87 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNY   87 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESS-TTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEE
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecC-CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeecc
Confidence            44677776         3556999999865 4578999999999999999999999999999988754433321   111


Q ss_pred             cCCcCc-ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980          89 KAAFGC-SDIYFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      ...... ...++++........+. ..+|+.+++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~  123 (153)
T d1xsba_          88 VARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLG  123 (153)
T ss_dssp             ESSSCEEEEEEEEEEESCTTCCCC-CCTTEEEEEEEC
T ss_pred             cccCceeEEEEEEEEEeecccccC-CCcceeEEEEEE
Confidence            111111 12233333333333333 357889999986

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.74  E-value=6e-18  Score=101.35  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=45.7

Q ss_pred             EEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980          23 AGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF   84 (124)
Q Consensus        23 ~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~   84 (124)
                      +++++.+++|++|+.||...  ++|+|+||+|.++.+++ .+++.||+.||+|+++.....+..
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~   69 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVS   69 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEE
T ss_pred             EEEEEEECCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEecccccc
Confidence            45556677789999999654  89999999999997777 788999999999999886554443

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5.3e-17  Score=104.60  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=50.4

Q ss_pred             eeeEEEEEEc-CCCcEEEEEe-cCC------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980          20 MIGAGAVVLN-DKNQVLVVKE-FYR------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR   85 (124)
Q Consensus        20 ~~~~~~~v~~-~~~~iLl~~r-~~~------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~   85 (124)
                      ..++++++++ ..++++|+++ +.+      ..-.|++|+|.+|+||++++||+||+.||||+++.....++..
T Consensus        57 ~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~  130 (209)
T d1g0sa_          57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSF  130 (209)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_pred             CCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeecccc
Confidence            4566666666 4467888877 332      1125799999999999999999999999999998766655544

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.64  E-value=2.8e-16  Score=100.03  Aligned_cols=62  Identities=19%  Similarity=0.218  Sum_probs=47.5

Q ss_pred             ceeeeEEEEEEcCCC-----------cEEEEEecCCCCCCeeccceeecCCCC-HHHHHHHHHHHHhccCcccceeE
Q psy9980          18 HTMIGAGAVVLNDKN-----------QVLVVKEFYRKRPQWKLPGGYVEMSED-IGEAAVREVFEETNIRTEFHSVV   82 (124)
Q Consensus        18 ~~~~~~~~~v~~~~~-----------~iLl~~r~~~~~~~w~~PgG~~~~gEs-~~~aa~RE~~EE~Gl~~~~~~~~   82 (124)
                      ..+.++.++++.+++           .+|+++|   ..|.|.||||++++||+ .++||.||+.||||+.+...++.
T Consensus        18 g~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r---~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~   91 (196)
T d1u20a1          18 GYKHACHALLHAPSQAKLFDRVPIRRVLLMMMR---FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVT   91 (196)
T ss_dssp             SCEEEEEEEEEEECCCEETTTEECCEEEEEEEE---TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCC
T ss_pred             CcceEEEEEEEcCCCceEEEEecCCcEEEEEEe---cCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEE
Confidence            345566767765333           3566666   46999999999999995 78999999999999988765543

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.8e-15  Score=99.19  Aligned_cols=43  Identities=30%  Similarity=0.461  Sum_probs=39.3

Q ss_pred             cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980          33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE   77 (124)
Q Consensus        33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~   77 (124)
                      ++|+++|+  ..+.|.||||++++||++.+||+||+.||||+.+.
T Consensus       140 qvLlIkR~--d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~  182 (292)
T d1q33a_         140 QFVAIKRK--DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ  182 (292)
T ss_dssp             EEEEEECT--TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGG
T ss_pred             EEEEEEec--CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccc
Confidence            48999986  36899999999999999999999999999999875

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.3e-14  Score=90.85  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=59.0

Q ss_pred             eeEEEEEEc-CCCcEEEEEe-cCC-------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980          21 IGAGAVVLN-DKNQVLVVKE-FYR-------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA   91 (124)
Q Consensus        21 ~~~~~~v~~-~~~~iLl~~r-~~~-------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~   91 (124)
                      -++++++++ .+++++|+++ +.+       ..-.|.+|+|-++ ||++++||+||+.||||+.+.....++..+..+..
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG~  122 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  122 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTT
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCccc
Confidence            467777776 4578888877 322       2234568899887 66789999999999999998866666544322222


Q ss_pred             cCcccEEEEEEecc--CCc--cCCCCcccccceeecC
Q psy9980          92 FGCSDIYFIVRLKP--LTQ--EITKDDREITESKWMD  124 (124)
Q Consensus        92 ~~~~~~~~~~~~~~--~~~--~~~~~~~e~~~~~W~~  124 (124)
                      .+  ..+++|.+..  ...  ......+|..++.|+|
T Consensus       123 ~~--e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~  157 (189)
T d1viua_         123 VT--ELIHFFIAEYSDNQRANAGGGVEDEDIEVLELP  157 (189)
T ss_dssp             BC--CEEEEEEEECCTTCC---------CCEEEEEEE
T ss_pred             cC--ceEEEEEEEECCcccccCCCCCCCccEEEEEEE
Confidence            22  2222333322  111  1122345667788874

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-13  Score=81.95  Aligned_cols=105  Identities=15%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             cceeeeEEEEEEc---CCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980          17 AHTMIGAGAVVLN---DKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA   91 (124)
Q Consensus        17 ~~~~~~~~~~v~~---~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~   91 (124)
                      .+....+++++.+   .++++||.||...  ++|+|+||+|.++.+|+..+++.|+..+|.+..+........ ..+.+.
T Consensus         9 ~~~~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~-~~v~H~   87 (142)
T d1x51a1           9 PREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHL-GEVVHT   87 (142)
T ss_dssp             TTEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEEC-CCBCCB
T ss_pred             CCEEEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeee-ccceec
Confidence            3445555566655   3579999999544  899999999999999999888877766666654443222211 122233


Q ss_pred             cCcccE-EEEEEeccCCccCCCCcccccceeecC
Q psy9980          92 FGCSDI-YFIVRLKPLTQEITKDDREITESKWMD  124 (124)
Q Consensus        92 ~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~W~~  124 (124)
                      +.+..+ +.++.+......+.  ..+..+++|++
T Consensus        88 fsH~~~~~~v~~~~~~~~~~~--~~~~~~~~W~~  119 (142)
T d1x51a1          88 FSHIKLTYQVYGLALEGQTPV--TTVPPGARWLT  119 (142)
T ss_dssp             CSSCEEEEEEEEEECSSCCCC--CCCCTTEEEEE
T ss_pred             cCCcceEEEEEEEEEeCCCcc--cccCccCEEee
Confidence            333332 23344443333322  24567788874