Domain ID e1e3pA6

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 000071330
Type: Automatic domain
Parent: e1e3hA6
Range: A:346-482
Ligands: SO4 WO4
PDB: 1e3p
PDB Description: Polyribonucleotide nucleotidyltransferase
UniProt: Q53597
Hsap BLAST neighbor: Q8TCS8
Species: Streptomyces antibioticus

Structure of domain e1e3pA6

Domains in the same chain:

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e1e3pA5 A:3-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA7 A:152-262 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA2 A:263-345 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e1e3pA6 A:346-482 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA3 A:483-578 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA8 A:579-634 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e1e3pA9 A:656-679,A:699-717 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e1e3pA5 A:3-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA7 A:152-262 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA2 A:263-345 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e1e3pA6 A:346-482 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA3 A:483-578 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA8 A:579-634 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e1e3pA9 A:656-679,A:699-717 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e1e3pA6 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1e3pA5 A:x,y,z->A:-Y,X-Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1e3pA9 A:x,y,z->A:Y-1/3,X+1/3,-Z+1/3 Nucleic acid-binding proteins Interaction Interface Pymol
e1e3pA9 A:Y-1/3,X+1/3,-Z+1/3->A:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol