Domain ID e1e3pA7

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  • A: a+b two layers
  • X: Ribonuclease PH domain 2-like
  • H: Ribonuclease PH domain 2
  • T: Ribonuclease PH domain 2
  • F: RNase_PH_C
UID: 000131952
Type: Automatic domain
Parent: e1e3hA2
Range: A:152-262
Ligands: SO4
PDB: 1e3p
PDB Description: Polyribonucleotide nucleotidyltransferase
UniProt: Q53597
Species: Streptomyces antibioticus

Structure of domain e1e3pA7

Domains in the same chain:

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e1e3pA5 A:3-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA7 A:152-262 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA2 A:263-345 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e1e3pA6 A:346-482 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA3 A:483-578 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA8 A:579-634 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e1e3pA9 A:656-679,A:699-717 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e1e3pA5 A:3-151 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA7 A:152-262 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA2 A:263-345 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e1e3pA6 A:346-482 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1e3pA3 A:483-578 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1e3pA8 A:579-634 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e1e3pA9 A:656-679,A:699-717 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e1e3pA7 of H-group "Ribonuclease PH domain 2":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1e3pA2 A:x,y,z->A:Y,X,-Z Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Interaction Interface Pymol
e1e3pA2 A:Y,X,-Z->A:x,y,z Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Interaction Interface Pymol
e1e3pA7 A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+1/3 Ribonuclease PH domain 2 Interaction Interface Pymol
e1e3pA5 A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+1/3 Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1e3pA5 A:-X+2/3,-X+Y+1/3,-Z+1/3->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1e3pA7 A:-X+2/3,-X+Y+1/3,-Z+1/3->A:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol