ECOD: domain e1gqyB2

Domain ID e1gqyB2

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Mur_ligase_M

UID:	000102997
Type:	Automatic domain
Parent:	e1j6uA2
Range:	B:107-321
Ligands:	ACP MG
PDB:	1gqy
PDB Description:	UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
UniProt:	P45066
Species:	Haemophilus influenzae

Domain
In chain context
In PDB context

Structure of domain e1gqyB2

Domains in the same chain:

Download Pymol

e1gqyB1	B:11-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1gqyB2	B:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gqyB3	B:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e1gqyA1	A:11-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1gqyA2	A:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gqyA3	A:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e1gqyB1	B:11-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1gqyB2	B:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gqyB3	B:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e1gqyB2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1gqyA2	B:x,y,z->A:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e1gqyA1	B:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1gqyA3	B:X,Y,Z-1->A:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e1gqyA2	B:X,Y,Z-1->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e1gqyA3	B:x,y,z->A:-X+2,Y-1/2,-Z+1	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol