Domain ID e1gqyB3

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  • A: a/b three-layered sandwiches
  • X: MurD-like peptide ligases, peptide-binding domain
  • H: MurD-like peptide ligases, peptide-binding domain
  • T: MurD-like peptide ligases, peptide-binding domain
  • F: Mur_ligase_C
UID: 000110171
Type: Automatic domain
Parent: e1e8cA2
Range: B:322-473
Ligands: ACP
PDB: 1gqy
PDB Description: UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
UniProt: P45066
Species: Haemophilus influenzae

Structure of domain e1gqyB3

Structural contacts of domain e1gqyB3 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gqyA1 B:x,y,z->A:X-1,Y,Z Rossmann-related Interaction Interface Pymol
e1gqyB2 B:x,y,z->B:-X+1,Y-1/2,-Z+2 P-loop domains-related Interaction Interface Pymol
e1gqyA2 B:x,y,z->A:-X+1,Y-1/2,-Z+1 P-loop domains-related Interaction Interface Pymol
e1gqyA3 B:x,y,z->A:X-1,Y,Z+1 MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol