Domain ID e1hr0D1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549861
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: ZN
PDB: 1hr0
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species: Thermus thermophilus

Structure of domain e1hr0D1

Domains in the same chain:

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e1hr0D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e1hr0B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1hr0C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1hr0C1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1hr0D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1hr0E1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1hr0E2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1hr0F1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1hr0G1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1hr0H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1hr0H2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1hr0I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1hr0J1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1hr0K1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1hr0L1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1hr0M1 M:2-126 HhH/H2TH H2TH H2TH
e1hr0N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1hr0O1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1hr0P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1hr0Q1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1hr0R1 R:19-88 HTH HTH tri-helical
e1hr0S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1hr0T1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e1hr0W1 W:1-71 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e1hr0D1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1hr0E2 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1hr0H1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e1hr0C1 D:X,Y,Z->C:x,y,z Ribosomal protein S3-C Interaction Interface Pymol