Domain ID e1ibkB1

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Ribosomal protein S2/SIS domain
  • T: Ribosomal protein S2/SIS domain
  • F: Ribosomal_S2
UID: 001549877
Type: Automatic domain
Parent: e4z8c1b1
Range: B:7-127,B:157-240
PDB: 1ibk
PDB Description: 30S RIBOSOMAL PROTEIN S2
UniProt: P80371
Hsap BLAST neighbor: Q9Y399
Species: Thermus thermophilus

Structure of domain e1ibkB1

Domains in the same chain:

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e1ibkB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain

Domains in the same PDB:

e1ibkB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1ibkC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1ibkC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1ibkD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1ibkE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1ibkE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibkF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1ibkG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1ibkH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1ibkH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1ibkI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibkJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1ibkK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1ibkL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibkM1 M:2-126 HhH/H2TH H2TH H2TH
e1ibkN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1ibkO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1ibkP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1ibkQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibkR1 R:16-88 HTH HTH tri-helical
e1ibkS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1ibkT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1ibkB1 of H-group "Ribosomal protein S2/SIS domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ibkB1 B:x,y,z->B:Y,X,-Z Ribosomal protein S2/SIS domain Interaction Interface Pymol
e1ibkB1 B:Y,X,-Z->B:x,y,z Ribosomal protein S2/SIS domain Interaction Interface Pymol
e1ibkH2 B:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol