Domain ID e1ibkD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549878
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: MG ZN
PDB: 1ibk
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species: Thermus thermophilus

Structure of domain e1ibkD1

Domains in the same chain:

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e1ibkD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e1ibkB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1ibkC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1ibkC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1ibkD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1ibkE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1ibkE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibkF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1ibkG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1ibkH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1ibkH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1ibkI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibkJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1ibkK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1ibkL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibkM1 M:2-126 HhH/H2TH H2TH H2TH
e1ibkN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1ibkO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1ibkP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1ibkQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibkR1 R:16-88 HTH HTH tri-helical
e1ibkS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1ibkT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1ibkD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ibkE3 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1ibkE4 D:X,Y,Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e1ibkH2 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e1ibkH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol