ECOD: domain e1ir1D2

Domain ID e1ir1D2

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: RuBisCO_large

UID:	000095567
Type:	Automatic domain
Parent:	e5rubA2
Range:	D:151-475
Ligands:	CAP MG
PDB:	1ir1
PDB Description:	LARGE SUBUNIT OF RUBISCO
UniProt:	P00875
Species:	Spinacia oleracea

Domain
In chain context
In PDB context

Structure of domain e1ir1D2

Domains in the same chain:

Download Pymol

e1ir1D1	D:12-147	Alpha-beta plaits	RuBisCO, large subunit, small (N-terminal) domain	RuBisCO, large subunit, small (N-terminal) domain
e1ir1D2	D:151-475	TIM beta/alpha-barrel	TIM barrels	TIM barrels

Domains in the same PDB:

e1ir1A1	A:12-147	Alpha-beta plaits	RuBisCO, large subunit, small (N-terminal) domain	RuBisCO, large subunit, small (N-terminal) domain
e1ir1A2	A:151-475	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ir1B1	B:12-147	Alpha-beta plaits	RuBisCO, large subunit, small (N-terminal) domain	RuBisCO, large subunit, small (N-terminal) domain
e1ir1B2	B:151-475	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ir1C1	C:12-147	Alpha-beta plaits	RuBisCO, large subunit, small (N-terminal) domain	RuBisCO, large subunit, small (N-terminal) domain
e1ir1C2	C:151-475	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ir1D1	D:12-147	Alpha-beta plaits	RuBisCO, large subunit, small (N-terminal) domain	RuBisCO, large subunit, small (N-terminal) domain
e1ir1D2	D:151-475	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ir1S1	S:1-123	Reverse ferredoxin	RuBisCO, small subunit	RuBisCO, small subunit
e1ir1T1	T:1-123	Reverse ferredoxin	RuBisCO, small subunit	RuBisCO, small subunit
e1ir1U1	U:1-123	Reverse ferredoxin	RuBisCO, small subunit	RuBisCO, small subunit
e1ir1V1	V:1-123	Reverse ferredoxin	RuBisCO, small subunit	RuBisCO, small subunit

Structural contacts of domain e1ir1D2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ir1D1	D:x,y,z->D:-X,Y,-Z+1/2	RuBisCO, large subunit, small (N-terminal) domain	Interaction Interface Pymol
e1ir1D2	D:x,y,z->D:-X,Y,-Z+1/2	TIM barrels	Interaction Interface Pymol
e1ir1D1	D:-X,Y,-Z+1/2->D:x,y,z	RuBisCO, large subunit, small (N-terminal) domain	Interaction Interface Pymol
e1ir1D2	D:-X,Y,-Z+1/2->D:x,y,z	TIM barrels	Interaction Interface Pymol
e1ir1V1	D:X,Y,Z->V:x,y,z	RuBisCO, small subunit	Interaction Interface Pymol
e1ir1U1	D:X,Y,Z->U:x,y,z	RuBisCO, small subunit	Interaction Interface Pymol
e1ir1C1	D:x,y,z->C:X,Y,Z	RuBisCO, large subunit, small (N-terminal) domain	Interaction Interface Pymol
e1ir1C2	D:x,y,z->C:X,Y,Z	TIM barrels	Interaction Interface Pymol
e1ir1A2	D:x,y,z->A:X,Y,Z	TIM barrels	Interaction Interface Pymol
e1ir1C1	D:x,y,z->C:-X,Y,-Z+1/2	RuBisCO, large subunit, small (N-terminal) domain	Interaction Interface Pymol
e1ir1D2	D:x,y,z->D:X,-Y,-Z	TIM barrels	Interaction Interface Pymol
e1ir1D2	D:X,-Y,-Z->D:x,y,z	TIM barrels	Interaction Interface Pymol