ECOD: domain e1jk8A1

Domain ID e1jk8A1

A: beta sandwiches
X: Immunoglobulin-like beta-sandwich
H: Immunoglobulin-related
T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
F: C1-set

UID:	000038768
Type:	Automatic domain
Parent:	e1k5nB1
Range:	A:85-180
PDB:	1jk8
PDB Description:	MHC class II HLA-DQ8
UniProt:	P01909
Hsap BLAST neighbor:	P01906
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e1jk8A1

Domains in the same chain:

Download Pymol

e1jk8A2	A:2-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e1jk8A1	A:85-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e1jk8A2	A:2-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e1jk8A1	A:85-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jk8B2	B:3-94	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e1jk8B3	B:93-192	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e1jk8A1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1jk8B3	A:X,Y,Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1jk8B3	A:X,Y,Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1jk8B3	A:-X,Y-1/2,-Z+1->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol