ECOD: domain e1jk8A2

Domain ID e1jk8A2

A: a+b two layers
X: MHC antigen-recognition domain
H: MHC antigen-recognition domain
T: MHC antigen-recognition domain
F: MHC_II_alpha

UID:	000075374
Type:	Automatic domain
Parent:	e1hdmA2
Range:	A:2-81
Ligands:	NAG
PDB:	1jk8
PDB Description:	MHC class II HLA-DQ8
UniProt:	P01909
Hsap BLAST neighbor:	P01909
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e1jk8A2	A:2-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e1jk8A1	A:85-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e1jk8A2	A:2-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e1jk8A1	A:85-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jk8B2	B:3-94	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e1jk8B3	B:93-192	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e1jk8A2 of H-group "MHC antigen-recognition domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1hdmA2	A:X,Y,Z->B:x,y,z	MHC antigen-recognition domain	Interaction Interface Pymol
e1jk8B3	A:X,Y,Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1jk8B3	A:-X+1,Y-1/2,-Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1jk8B3	A:-X+1,Y-1/2,-Z+1->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol