ECOD: domain e1ldkC1

Domain ID e1ldkC1

A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: RING/U-box
F: zf-rbx1

UID:	000089425
Type:	Automatic domain
Parent:	e3dplR1
Range:	C:1019-1106
Ligands:	ZN
PDB:	1ldk
PDB Description:	ring-box protein 1
UniProt:	P62877
Hsap BLAST neighbor:	P62877
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e1ldkC1

Domains in the same chain:

Download Pymol

e1ldkC1	C:1019-1106	RING/U-box-like	RING/U-box-like	RING/U-box

Domains in the same PDB:

e1ldkA1	A:17-55,A:82-410	Repetitive alpha hairpins	ARM repeat	ARM repeat
e1ldkB3	B:411-504	Repetitive alpha hairpins	ARM repeat	ARM repeat
e1ldkB4	B:521-618	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins
e1ldkB2	B:603-685	HTH	HTH	winged
e1ldkB1	B:687-776	HTH	HTH	winged
e1ldkC1	C:1019-1106	RING/U-box-like	RING/U-box-like	RING/U-box
e1ldkD1	D:2002-2140	POZ domain	POZ domain	POZ domain
e1ldkE1	E:3109-3149	F-box domain	F-box domain	F-box domain

Structural contacts of domain e1ldkC1 of H-group "RING/U-box-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ldkB3	C:x,y,z->B:X,Y,Z	ARM repeat	Interaction Interface Pymol
e1ldkB1	C:x,y,z->B:X,Y,Z	HTH	Interaction Interface Pymol
e1ldkB4	C:x,y,z->B:X,Y,Z	a+b domain in cullin-like proteins	Interaction Interface Pymol
e1ldkB2	C:x,y,z->B:X,Y,Z	HTH	Interaction Interface Pymol
e1ldkC1	C:x,y,z->C:-X+1,-Y,Z	RING/U-box-like	Interaction Interface Pymol
e1ldkC1	C:-X+1,-Y,Z->C:x,y,z	RING/U-box-like	Interaction Interface Pymol
e1ldkB1	C:x,y,z->B:-X+1,-Y,Z	HTH	Interaction Interface Pymol
e1ldkB4	C:X,Y-1,Z->B:x,y,z	a+b domain in cullin-like proteins	Interaction Interface Pymol