Domain ID e1n33E1

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 000070080
Type: Automatic domain
Parent: e1pkpA1
Range: E:5-72
PDB: 1n33
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species: Thermus thermophilus

Structure of domain e1n33E1

Domains in the same chain:

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e1n33E1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1n33E2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e1n33B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1n33C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1n33C1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1n33D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1n33E1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1n33E2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1n33F1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1n33G1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1n33H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1n33H2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1n33I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1n33J1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1n33K1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1n33L1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1n33M1 M:2-119 HhH/H2TH H2TH H2TH
e1n33N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1n33O1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1n33P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1n33Q1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1n33R1 R:19-88 HTH HTH tri-helical
e1n33S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1n33T1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1n33E1 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1n33C1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol
e1n33B1 E:x,y,z->B:Y,X,-Z Ribosomal protein S2/SIS domain Interaction Interface Pymol