Domain ID e1ogyA5

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Formate dehydrogenase/DMSO reductase, domains 2 and 3
  • T: Formate dehydrogenase/DMSO reductase, domains 2 and 3
  • F: Molybdopterin
UID: 001681431
Type: Manual and representative domain
Range: A:68-152,A:384-681
Ligands: MGD MO
PDB: 1ogy
PDB Description: PERIPLASMIC NITRATE REDUCTASE
UniProt: Q53176
Species: Rhodobacter sphaeroides

Structure of domain e1ogyA5

Domains in the same chain:

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e1ogyA3 A:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyA5 A:68-152,A:384-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyA4 A:153-383 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyA1 A:682-801 cradle loop barrel RIFT-related double psi

Domains in the same PDB:

e1ogyA3 A:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyA5 A:68-152,A:384-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyA4 A:153-383 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyA1 A:682-801 cradle loop barrel RIFT-related double psi
e1ogyB1 B:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif
e1ogyC4 C:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyC2 C:68-156,C:388-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyC3 C:153-387 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyC1 C:682-801 cradle loop barrel RIFT-related double psi
e1ogyD1 D:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif
e1ogyE4 E:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyE2 E:68-156,E:388-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyE3 E:153-387 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyE1 E:682-801 cradle loop barrel RIFT-related double psi
e1ogyF1 F:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif
e1ogyG4 G:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyG2 G:68-156,G:388-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyG3 G:153-387 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyG1 G:682-801 cradle loop barrel RIFT-related double psi
e1ogyH1 H:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif
e1ogyI4 I:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyI2 I:68-156,I:388-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyI3 I:153-387 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyI1 I:682-801 cradle loop barrel RIFT-related double psi
e1ogyJ1 J:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif
e1ogyK4 K:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyK2 K:68-156,K:388-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyK3 K:153-387 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyK1 K:682-801 cradle loop barrel RIFT-related double psi
e1ogyL1 L:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif
e1ogyM4 M:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyM2 M:68-156,M:388-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyM3 M:153-387 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyM1 M:682-801 cradle loop barrel RIFT-related double psi
e1ogyN1 N:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif
e1ogyO4 O:12-67 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e1ogyO2 O:68-156,O:388-681 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyO3 O:153-387 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1ogyO1 O:682-801 cradle loop barrel RIFT-related double psi
e1ogyP1 P:2-128 Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif

Structural contacts of domain e1ogyA5 of H-group "Formate dehydrogenase/DMSO reductase, domains 2 and 3":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ogyB1 A:X,Y,Z->B:x,y,z Di-heme elbow motif Interaction Interface Pymol
e1ogyC3 A:-X,Y-1/2,-Z+1->C:x,y,z Formate dehydrogenase/DMSO reductase, domains 2 and 3 Interaction Interface Pymol
e1ogyC2 A:-X,Y-1/2,-Z+1->C:x,y,z Formate dehydrogenase/DMSO reductase, domains 2 and 3 Interaction Interface Pymol
e1ogyK3 A:X,Y,Z-1->K:x,y,z Formate dehydrogenase/DMSO reductase, domains 2 and 3 Interaction Interface Pymol
e1ogyK2 A:X,Y,Z-1->K:x,y,z Formate dehydrogenase/DMSO reductase, domains 2 and 3 Interaction Interface Pymol