ECOD: domain e1p3dA1

Domain ID e1p3dA1

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: MurCD/PglD N-terminal domain-like
F: Mur_ligase

UID:	000009454
Type:	Manual and representative domain
Range:	A:11-106
Ligands:	UMA
PDB:	1p3d
PDB Description:	UDP-N-ACETYLMURAMATE--ALANINE LIGASE
UniProt:	P45066
Species:	Haemophilus influenzae

Domain
In chain context
In PDB context

Structure of domain e1p3dA1

Domains in the same chain:

Download Pymol

e1p3dA1	A:11-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1p3dA2	A:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1p3dA3	A:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e1p3dA1	A:11-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1p3dA2	A:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1p3dA3	A:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e1p3dB1	B:14-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1p3dB2	B:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1p3dB3	B:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e1p3dA1 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1p3dB2	A:x,y,z->B:X,Y-1,Z	P-loop domains-related	Interaction Interface Pymol
e1p3dB1	A:X-1,Y+1,Z->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e1p3dB3	A:X-1,Y+1,Z->B:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol