ECOD: domain e1p3dA3

Domain ID e1p3dA3

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	000010629
Type:	Manual and representative domain
Range:	A:322-473
Ligands:	ANP UMA
PDB:	1p3d
PDB Description:	UDP-N-ACETYLMURAMATE--ALANINE LIGASE
UniProt:	P45066
Species:	Haemophilus influenzae

Domain
In chain context
In PDB context

Structure of domain e1p3dA3

Domains in the same chain:

Download Pymol

e1p3dA1	A:11-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1p3dA2	A:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1p3dA3	A:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e1p3dA1	A:11-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1p3dA2	A:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1p3dA3	A:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e1p3dB1	B:14-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1p3dB2	B:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1p3dB3	B:322-473	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e1p3dA3 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1p3dA2	A:x,y,z->A:-X+1,Y-1/2,-Z+1	P-loop domains-related	Interaction Interface Pymol
e1p3dB2	A:x,y,z->B:X,Y-1,Z-1	P-loop domains-related	Interaction Interface Pymol
e1p3dB1	A:X-1,Y+1,Z->B:x,y,z	Rossmann-related	Interaction Interface Pymol