ECOD: domain e1tkdA7

Domain ID e1tkdA7

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: RNase_H_2

UID:	001168779
Type:	Automatic domain
Parent:	e1x9mA4
Range:	A:1-210
Ligands:	1PE MES MG SO4
PDB:	1tkd
PDB Description:	DNA POLYMERASE
UniProt:	P00581
Species:	Enterobacteria phage T7

Domains in the same chain:

Download Pymol

e1tkdA7	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1tkdA6	A:211-450	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1tkdA8	A:451-478,A:592-704	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1tkdA1	A:479-591	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1tkdA7	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1tkdA6	A:211-450	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1tkdA8	A:451-478,A:592-704	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1tkdA1	A:479-591	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1tkdB1	B:3-107	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like

Structural contacts of domain e1tkdA7 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1tkdA8	A:X,Y,Z-1->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e1tkdA1	A:x,y,z->A:-X+1,-Y+2,Z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e1tkdA8	A:x,y,z->A:-X+1,-Y+2,Z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e1tkdA1	A:-X+1,-Y+2,Z->A:x,y,z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e1tkdA8	A:-X+1,-Y+2,Z->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e1tkdA6	A:x,y,z->A:X-1/2,-Y+3/2,-Z+2	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1tkdA6	A:x,y,z->A:X-1/2,-Y+3/2,-Z+1	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1tkdB1	A:x,y,z->B:X-1/2,-Y+3/2,-Z+1	Thioredoxin-like	Interaction Interface Pymol
e1tkdB1	A:x,y,z->B:X-1/2,-Y+3/2,-Z+2	Thioredoxin-like	Interaction Interface Pymol