Domain ID e1vovR1

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Ribosomal_S18
UID: 000274093
Type: Automatic domain
Parent: e2uubR1
Range: R:16-88
PDB: 1vov
PDB Description:
Hsap BLAST neighbor: Q9Y3D5
Species:

Structure of domain e1vovR1

Domains in the same chain:

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e1vovR1 R:16-88 HTH HTH tri-helical

Domains in the same PDB:

e1vova1 a:1-90 dsRBD-like Ribosome binding protein Y (YfiA homologue) Ribosome binding protein Y (YfiA homologue)
e1vovC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vovC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vovE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1vovE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1vovF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1vovG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vovH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vovH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vovJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vovK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vovL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vovN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vovO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vovP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1vovR1 R:16-88 HTH HTH tri-helical
e1vovT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1vovR1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vovF1 R:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol
e1vovK1 R:x,y,z->K:X,Y,Z Ribonuclease H-like Interaction Interface Pymol