Domain ID e1vovO1

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  • A: alpha arrays
  • X: S15/NS1 RNA-binding domain
  • H: S15/NS1 RNA-binding domain
  • T: S15/NS1 RNA-binding domain
  • F: Ribosomal_S15
UID: 000274090
Type: Automatic domain
Parent: e3j6vO1
Range: O:2-89
PDB: 1vov
PDB Description:
Hsap BLAST neighbor: P82914
Species:

Structure of domain e1vovO1

Domains in the same chain:

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e1vovO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain

Domains in the same PDB:

e1vova1 a:1-90 dsRBD-like Ribosome binding protein Y (YfiA homologue) Ribosome binding protein Y (YfiA homologue)
e1vovC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vovC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vovE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1vovE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1vovF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1vovG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vovH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vovH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vovJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vovK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vovL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vovN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vovO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vovP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1vovR1 R:16-88 HTH HTH tri-helical
e1vovT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1vovO1 of H-group "S15/NS1 RNA-binding domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vovF1 O:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol