ECOD: domain e1vqk21

Domain ID e1vqk21

A: extended segments
X: Ribosomal protein L39e
H: Ribosomal protein L39e
T: Ribosomal protein L39e
F: Ribosomal_L39

UID:	000060768
Type:	Automatic domain
Parent:	e1vqo21
Range:	2:1-49
Ligands:	CL NA
PDB:	1vqk
PDB Description:	50S RIBOSOMAL PROTEIN L39E
UniProt:	P22452
Species:	Haloarcula marismortui

Domains in the same chain:

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e1vqk21	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e

Domains in the same PDB:

e1vqk11	1:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqk21	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e1vqk31	3:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqkA1	A:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vqkA2	A:91-237	SH3	SH3	SH3
e1vqkB1	B:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e1vqkC1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e1vqkD1	D:10-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e1vqkE1	E:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqkE2	E:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqkF1	F:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e1vqkG1	G:12-29,G:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e1vqkH1	H:1-163	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e1vqkI1	I:71-140	HTH	HTH	Ribosomal protein L11, C-terminal domain
e1vqkJ1	J:9-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e1vqkK1	K:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1vqkL1	L:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqkM1	M:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqkN1	N:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1vqkO1	O:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqkP1	P:1-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e1vqkP2	P:55-142	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e1vqkQ1	Q:1-95	SH3	SH3	SH3
e1vqkR1	R:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e1vqkS1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqkT1	T:1-119	SH3	SH3	SH3
e1vqkU1	U:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1vqkV1	V:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e1vqkW1	W:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e1vqkX1	X:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e1vqkY1	Y:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e1vqkZ1	Z:10-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e1vqk21 of H-group "Ribosomal protein L39e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vqkS1	2:x,y,z->S:X,Y,Z	Ribosomal proteins S24e, L23 and L15e	Interaction Interface Pymol
e1vqk11	2:x,y,z->1:X,Y,Z	Rubredoxin-related	Interaction Interface Pymol