Domain ID e1vqkC1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000109895
Type: Automatic domain
Parent: e1vqoC1
Range: C:1-246
Ligands: MG NA SR
PDB: 1vqk
PDB Description: 50S RIBOSOMAL PROTEIN L4E
UniProt: P12735
Hsap BLAST neighbor: P36578
Species: Haloarcula marismortui

Structure of domain e1vqkC1

Domains in the same chain:

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e1vqkC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e1vqk11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vqk21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1vqk31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vqkA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vqkA2 A:91-237 SH3 SH3 SH3
e1vqkB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1vqkC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vqkD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vqkE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqkE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqkF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1vqkG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1vqkH1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1vqkI1 I:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e1vqkJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vqkK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vqkL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqkM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqkN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vqkO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqkP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1vqkP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1vqkQ1 Q:1-95 SH3 SH3 SH3
e1vqkR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vqkS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqkT1 T:1-119 SH3 SH3 SH3
e1vqkU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vqkV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vqkW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vqkX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1vqkY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1vqkZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1vqkC1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vqkO1 C:X,Y,Z->O:x,y,z Ribosomal proteins L15p and L18e Interaction Interface Pymol
e1vqk11 C:X,Y,Z->1:x,y,z Rubredoxin-related Interaction Interface Pymol
e1vqkT1 C:X,Y,Z->T:x,y,z SH3 Interaction Interface Pymol