Domain ID e1vqmB1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: Alanine racemase-C
  • F: Ribosomal_L3
UID: 000021744
Type: Automatic domain
Parent: e1vqoB1
Range: B:1-337
Ligands: CL MG NA SR
PDB: 1vqm
PDB Description: 50S ribosomal protein L3P
UniProt: P20279
Hsap BLAST neighbor: P39023
Species: Haloarcula marismortui

Structure of domain e1vqmB1

Domains in the same chain:

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e1vqmB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C

Domains in the same PDB:

e1vqm11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vqm21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1vqm31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vqmA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vqmA2 A:91-237 SH3 SH3 SH3
e1vqmB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1vqmC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vqmD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vqmE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqmE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqmF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1vqmG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1vqmH1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1vqmI1 I:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e1vqmJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vqmK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vqmL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqmM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqmN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vqmO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqmP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1vqmP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1vqmQ1 Q:1-95 SH3 SH3 SH3
e1vqmR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vqmS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqmT1 T:1-119 SH3 SH3 SH3
e1vqmU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vqmV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vqmW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vqmX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1vqmY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1vqmZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1vqmB1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vqmK1 B:X,Y,Z->K:x,y,z Ribosomal protein L14-related Interaction Interface Pymol
e1vqmJ1 B:X,Y,Z->J:x,y,z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e1vqmU1 B:X,Y,Z->U:x,y,z LIM domain-like Interaction Interface Pymol
e1vqmD1 B:-X+1/2,Y-1/2,-Z+1/2->D:x,y,z Ribosomal protein L5 Interaction Interface Pymol