ECOD: domain e1vqmC1

Domain ID e1vqmC1

A: a/b three-layered sandwiches
X: Ribosomal protein L4
H: Ribosomal protein L4
T: Ribosomal protein L4
F: Ribosomal_L4

UID:	000109886
Type:	Automatic domain
Parent:	e1vqoC1
Range:	C:1-246
Ligands:	MG NA
PDB:	1vqm
PDB Description:	50S ribosomal protein L4E
UniProt:	P12735
Hsap BLAST neighbor:	P36578
Species:	Haloarcula marismortui

Domains in the same chain:

Download Pymol

e1vqmC1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4

Domains in the same PDB:

e1vqm11	1:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqm21	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e1vqm31	3:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqmA1	A:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vqmA2	A:91-237	SH3	SH3	SH3
e1vqmB1	B:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e1vqmC1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e1vqmD1	D:10-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e1vqmE1	E:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqmE2	E:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqmF1	F:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e1vqmG1	G:12-29,G:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e1vqmH1	H:1-163	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e1vqmI1	I:71-140	HTH	HTH	Ribosomal protein L11, C-terminal domain
e1vqmJ1	J:9-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e1vqmK1	K:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1vqmL1	L:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqmM1	M:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqmN1	N:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1vqmO1	O:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqmP1	P:1-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e1vqmP2	P:55-142	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e1vqmQ1	Q:1-95	SH3	SH3	SH3
e1vqmR1	R:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e1vqmS1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqmT1	T:1-119	SH3	SH3	SH3
e1vqmU1	U:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1vqmV1	V:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e1vqmW1	W:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e1vqmX1	X:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e1vqmY1	Y:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e1vqmZ1	Z:10-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e1vqmC1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vqmO1	C:X,Y,Z->O:x,y,z	Ribosomal proteins L15p and L18e	Interaction Interface Pymol
e1vqm11	C:X,Y,Z->1:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e1vqmT1	C:X,Y,Z->T:x,y,z	SH3	Interaction Interface Pymol