Domain ID e1vqn21

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  • A: extended segments
  • X: Ribosomal protein L39e
  • H: Ribosomal protein L39e
  • T: Ribosomal protein L39e
  • F: Ribosomal_L39
UID: 000060793
Type: Automatic domain
Parent: e1vqo21
Range: 2:1-49
Ligands: CL NA
PDB: 1vqn
PDB Description: 50S RIBOSOMAL PROTEIN L39E
UniProt: P22452
Species: Haloarcula marismortui

Structure of domain e1vqn21

Domains in the same chain:

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e1vqn21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e

Domains in the same PDB:

e1vqn11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vqn21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1vqn31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vqnA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vqnA2 A:91-237 SH3 SH3 SH3
e1vqnB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1vqnC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vqnD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vqnE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqnE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqnF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1vqnG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1vqnH1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1vqnI1 I:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e1vqnJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vqnK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vqnL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqnM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqnN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vqnO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqnP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1vqnP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1vqnQ1 Q:1-95 SH3 SH3 SH3
e1vqnR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vqnS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqnT1 T:1-119 SH3 SH3 SH3
e1vqnU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vqnV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vqnW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vqnX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1vqnY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1vqnZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1vqn21 of H-group "Ribosomal protein L39e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vqnS1 2:x,y,z->S:X,Y,Z Ribosomal proteins S24e, L23 and L15e Interaction Interface Pymol
e1vqn11 2:x,y,z->1:X,Y,Z Rubredoxin-related Interaction Interface Pymol