ECOD: domain e1vqnS1

Domain ID e1vqnS1

A: a+b two layers
X: Alpha-beta plaits
H: Ribosomal proteins S24e, L23 and L15e
T: Ribosomal proteins S24e, L23 and L15e
F: Ribosomal_L23

UID:	000064028
Type:	Automatic domain
Parent:	e1vqoS1
Range:	S:1-81
Ligands:	NA SR
PDB:	1vqn
PDB Description:	50S RIBOSOMAL PROTEIN L23P
UniProt:	P12732
Hsap BLAST neighbor:	P62750
Species:	Haloarcula marismortui

Domains in the same chain:

Download Pymol

e1vqnS1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e

Domains in the same PDB:

e1vqn11	1:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqn21	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e1vqn31	3:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqnA1	A:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vqnA2	A:91-237	SH3	SH3	SH3
e1vqnB1	B:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e1vqnC1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e1vqnD1	D:10-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e1vqnE1	E:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqnE2	E:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqnF1	F:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e1vqnG1	G:12-29,G:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e1vqnH1	H:1-163	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e1vqnI1	I:71-140	HTH	HTH	Ribosomal protein L11, C-terminal domain
e1vqnJ1	J:9-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e1vqnK1	K:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1vqnL1	L:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqnM1	M:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqnN1	N:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1vqnO1	O:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqnP1	P:1-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e1vqnP2	P:55-142	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e1vqnQ1	Q:1-95	SH3	SH3	SH3
e1vqnR1	R:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e1vqnS1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqnT1	T:1-119	SH3	SH3	SH3
e1vqnU1	U:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1vqnV1	V:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e1vqnW1	W:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e1vqnX1	X:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e1vqnY1	Y:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e1vqnZ1	Z:10-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e1vqnS1 of H-group "Ribosomal proteins S24e, L23 and L15e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vqnV1	S:X,Y,Z->V:x,y,z	Ribosomal protein L29 (L29p)	Interaction Interface Pymol
e1vqn21	S:X,Y,Z->2:x,y,z	Ribosomal protein L39e	Interaction Interface Pymol