ECOD: domain e1vqqA1

Domain ID e1vqqA1

A: alpha complex topology
X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
F: Transpeptidase

UID:	000004881
Type:	Manual and representative domain
Range:	A:400-525
PDB:	1vqq
PDB Description:	PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
UniProt:	Q2PF50
Species:	Staphylococcus aureus

Domains in the same chain:

Download Pymol

e1vqqA3	A:27-138	Cystatin-like	NTF2-like	NTF2-like
e1vqqA5	A:139-167,A:239-327	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain
e1vqqA6	A:168-238	ClpS-like	Penicillin binding protein ClpS-like domain	Penicillin binding protein ClpS-like domain
e1vqqA4	A:328-399,A:526-668	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e1vqqA1	A:400-525	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins

Domains in the same PDB:

e1vqqA3	A:27-138	Cystatin-like	NTF2-like	NTF2-like
e1vqqA5	A:139-167,A:239-327	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain
e1vqqA6	A:168-238	ClpS-like	Penicillin binding protein ClpS-like domain	Penicillin binding protein ClpS-like domain
e1vqqA4	A:328-399,A:526-668	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e1vqqA1	A:400-525	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e1vqqB5	B:27-138	Cystatin-like	NTF2-like	NTF2-like
e1vqqB3	B:139-167,B:239-327	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain
e1vqqB4	B:168-238	ClpS-like	Penicillin binding protein ClpS-like domain	Penicillin binding protein ClpS-like domain
e1vqqB2	B:328-399,B:526-668	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e1vqqB1	B:400-525	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins

Structural contacts of domain e1vqqA1 of H-group "alpha-helical domain in beta-lactamase/transpeptidase-like proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vqqB4	A:x,y,z->B:-X,Y-1/2,-Z+1/2	Penicillin binding protein ClpS-like domain	Interaction Interface Pymol
e1vqqB2	A:X-1/2,-Y+1/2,-Z+1->B:x,y,z	a+b domain in beta-lactamase/transpeptidase-like proteins	Interaction Interface Pymol
e1vqqB1	A:X-1/2,-Y+1/2,-Z+1->B:x,y,z	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	Interaction Interface Pymol
e1vqqB5	A:x,y,z->B:-X+1,Y-1/2,-Z+1/2	NTF2-like	Interaction Interface Pymol
e1vqqA4	A:X-1/2,-Y+1/2,-Z+1->A:x,y,z	a+b domain in beta-lactamase/transpeptidase-like proteins	Interaction Interface Pymol