ECOD: domain e1vvsF1

Domain ID e1vvsF1

A: a/b three-layered sandwiches
X: Ribosomal protein L4
H: Ribosomal protein L4
T: Ribosomal protein L4
F: Ribosomal_L4

UID:	001318911
Type:	Automatic domain
Parent:	e1dmgA1
Range:	F:6-207
Ligands:	MG
PDB:	1vvs
PDB Description:
Hsap BLAST neighbor:	Q9BYD3
Species:

Domains in the same chain:

Download Pymol

e1vvsF1	F:6-207	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4

Domains in the same PDB:

e1vvs01	0:2-83	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e1vvs11	1:2-98	Ribosomal protein bL28-related	Ribosomal protein bL28-related	Ribosomal protein L28
e1vvs21	2:4-72	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e1vvs31	3:2-60	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e1vvs41	4:1-50	Ribosomal protein L31p	Ribosomal protein L31p	Ribosomal protein L31p
e1vvs51	5:2-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vvs71	7:1-49	50S ribosomal protein L34	50S ribosomal protein L34	50S ribosomal protein L34
e1vvs81	8:2-65	Ribosomal protein L35p	Ribosomal protein L35p	Ribosomal protein L35p
e1vvs91	9:1-37	Ribosomal protein L36	Ribosomal protein L36	Ribosomal protein L36
e1vvsD2	D:2-126	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vvsD1	D:127-273	SH3	SH3	SH3
e1vvsF1	F:6-207	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e1vvsG1	G:2-182	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e1vvsH2	H:2-82	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vvsH1	H:83-171	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vvsI1	I:1-53	L9 N-domain-like	L9 N-domain-like	L9 N-domain-like
e1vvsI2	I:54-146	Ribosomal protein L9 C-domain	Ribosomal protein L9 C-domain	Ribosomal protein L9 C-domain
e1vvsN1	N:1-138	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e1vvsO1	O:1-122	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1vvsR1	R:1-118	Enolase-N/ribosomal protein	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17
e1vvsU1	U:2-118	PABP domain-like	Ribosomal protein L20	Ribosomal protein L20
e1vvsV1	V:1-101	Ribosomal protein L21p	Ribosomal protein L21p	Ribosomal protein L21p
e1vvsW1	W:1-113	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e1vvsX1	X:3-94	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vvsY1	Y:2-103	SH3	SH3	SH3
e1vvsZ1	Z:1-92	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like
e1vvsZ2	Z:93-183	Ribosomal protein TL5/L25 C-terminal domain-like	Ribosomal protein TL5/L25 C-terminal domain-related	Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e1vvsF1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1dmgA1	F:X,Y,Z->P:x,y,z	Ribosomal protein L4	Interaction Interface Pymol