ECOD: domain e1vxzE2

Domain ID e1vxzE2

A: beta barrels
X: OB-fold
H: Nucleic acid-binding proteins
T: Nucleic acid-binding proteins
F: Ribosomal_S4e

UID:	001319643
Type:	Automatic domain
Parent:	e3kbgA7
Range:	E:117-175
PDB:	1vxz
PDB Description:
Hsap BLAST neighbor:	Q8TD47
Species:

Domains in the same chain:

Download Pymol

e1vxzE3	E:2-116	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e1vxzE2	E:117-175	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vxzE1	E:176-261	SH3	SH3	SH3

Domains in the same PDB:

e1vxza1	a:2-98	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1vxzb1	b:2-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vxzB2	B:20-113	Ribosomal protein L25-like	40S ribosomal protein S3A N-terminal domain	40S ribosomal protein S3A N-terminal domain
e1vxzB1	B:114-233	T-fold	40S ribosomal protein S3A C-terminal domain	40S ribosomal protein S3A C-terminal domain
e1vxzc1	c:5-67	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vxzd1	d:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1vxzD1	D:3-91	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e1vxzD2	D:92-225	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e1vxzE3	E:2-116	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e1vxzE2	E:117-175	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vxzE1	E:176-261	SH3	SH3	SH3
e1vxzf1	f:82-152	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vxzF1	F:20-225	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e1vxzG1	G:1-226	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like
e1vxzH1	H:4-105	Alpha-lytic protease prodomain-like	40S ribosomal protein S7-A	40S ribosomal protein S7-A
e1vxzH2	H:106-187	Alpha-lytic protease prodomain-like	40S ribosomal protein S7-A	40S ribosomal protein S7-A
e1vxzI1	I:2-200	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1vxzK1	K:1-96	HTH	HTH	winged
e1vxzM1	M:20-143	Bacillus chorismate mutase-like	L30e-like	L30e-like
e1vxzN1	N:2-82	HTH	40S ribosomal protein S13 N-terminal domain	40S ribosomal protein S13 N-terminal domain
e1vxzN2	N:83-151	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e1vxzO1	O:11-137	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1vxzT1	T:2-144	HTH	HTH	winged
e1vxzU1	U:15-121	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e1vxzW2	W:2-67	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e1vxzW1	W:68-130	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e1vxzX1	X:2-145	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vxzY1	Y:2-135	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vxzZ1	Z:36-105	HTH	HTH	winged

Structural contacts of domain e1vxzE2 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vxzG1	E:x,y,z->G:X,Y,Z	Ribosomal protein L25-like	Interaction Interface Pymol