Domain ID e1vxzO1

Download files:
  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 001319656
Type: Automatic domain
Parent: e2uubK1
Range: O:11-137
PDB: 1vxz
PDB Description:
Hsap BLAST neighbor: P62263
Species:

Structure of domain e1vxzO1

Domains in the same chain:

Download Pymol

e1vxzO1 O:11-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e1vxza1 a:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vxzb1 b:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vxzB2 B:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e1vxzB1 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e1vxzc1 c:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vxzd1 d:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vxzD1 D:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vxzD2 D:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vxzE3 E:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1vxzE2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vxzE1 E:176-261 SH3 SH3 SH3
e1vxzf1 f:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vxzF1 F:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vxzG1 G:1-226 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vxzH1 H:4-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e1vxzH2 H:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e1vxzI1 I:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vxzK1 K:1-96 HTH HTH winged
e1vxzM1 M:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e1vxzN1 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e1vxzN2 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vxzO1 O:11-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vxzT1 T:2-144 HTH HTH winged
e1vxzU1 U:15-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vxzW2 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vxzW1 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vxzX1 X:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vxzY1 Y:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vxzZ1 Z:36-105 HTH HTH winged

Structural contacts of domain e1vxzO1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vxza1 O:x,y,z->a:X,Y,Z LIM domain-like Interaction Interface Pymol
e1vxzB2 O:X,Y,Z->B:x,y,z 40S ribosomal protein S3A N-terminal domain Interaction Interface Pymol
e1vxzc1 O:x,y,z->c:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e1vxzF1 O:X,Y,Z->F:x,y,z Ribosomal protein S7 Interaction Interface Pymol