Domain ID e1xnrB1

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Ribosomal protein S2/SIS domain
  • T: Ribosomal protein S2/SIS domain
  • F: Ribosomal_S2
UID: 001551254
Type: Automatic domain
Parent: e4z8c1b1
Range: B:7-127,B:157-240
PDB: 1xnr
PDB Description: 16S Ribosomal protein S2
UniProt: P80371
Hsap BLAST neighbor: Q9Y399
Species: Thermus thermophilus

Structure of domain e1xnrB1

Domains in the same chain:

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e1xnrB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain

Domains in the same PDB:

e1xnrB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1xnrC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1xnrC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1xnrD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1xnrE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1xnrE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1xnrF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1xnrG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1xnrH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1xnrH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1xnrI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1xnrJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1xnrK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xnrL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xnrM1 M:2-126 HhH/H2TH H2TH H2TH
e1xnrN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1xnrO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1xnrP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1xnrQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xnrR1 R:19-88 HTH HTH tri-helical
e1xnrS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1xnrT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1xnrB1 of H-group "Ribosomal protein S2/SIS domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1xnrB1 B:x,y,z->B:Y,X,-Z Ribosomal protein S2/SIS domain Interaction Interface Pymol
e1xnrB1 B:Y,X,-Z->B:x,y,z Ribosomal protein S2/SIS domain Interaction Interface Pymol
e1xnrH2 B:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol