Domain ID e1xnrI1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S9
UID: 001551256
Type: Automatic domain
Parent: e4v4vAI1
Range: I:2-128
PDB: 1xnr
PDB Description: 16S Ribosomal protein S9
UniProt: P80374
Hsap BLAST neighbor: P82933
Species: Thermus thermophilus

Structure of domain e1xnrI1

Domains in the same chain:

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e1xnrI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e1xnrB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1xnrC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1xnrC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1xnrD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1xnrE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1xnrE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1xnrF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1xnrG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1xnrH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1xnrH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1xnrI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1xnrJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1xnrK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xnrL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xnrM1 M:2-126 HhH/H2TH H2TH H2TH
e1xnrN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1xnrO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1xnrP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1xnrQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xnrR1 R:19-88 HTH HTH tri-helical
e1xnrS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1xnrT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1xnrI1 of H-group "Ribosomal protein S5 domain 2-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1xnrG1 I:x,y,z->G:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol
e1xnrJ1 I:X,Y,Z->J:x,y,z Ribosomal protein S10 Interaction Interface Pymol
e1xnrN1 I:X,Y,Z->N:x,y,z LIM domain-like Interaction Interface Pymol
e1xnrM1 I:X,Y,Z->M:x,y,z H2TH Interaction Interface Pymol