ECOD: domain e1y8rC1

Domain ID e1y8rC1

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: Rad60-SLD

UID:	000072192
Type:	Automatic domain
Parent:	e1wm3A1
Range:	C:21-92
PDB:	1y8r
PDB Description:	Ubiquitin-like protein SMT3C
UniProt:	P63165
Hsap BLAST neighbor:	P63165
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e1y8rC1

Domains in the same chain:

Download Pymol

e1y8rC1	C:21-92	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e1y8rA2	A:9-179,A:203-345	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8rB1	B:4-167,B:383-444	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8rB3	B:168-218,B:240-382	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8rB2	B:445-550	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e1y8rC1	C:21-92	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1y8rD1	D:9-177,D:204-345	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8rE2	E:4-167,E:383-444	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8rE3	E:168-218,E:240-382	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8rE1	E:445-550	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e1y8rF1	F:21-92	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e1y8rC1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1y8rB1	C:x,y,z->B:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1y8rD1	C:x,y,z->D:X,Y,Z	Rossmann-related	Interaction Interface Pymol