Domain ID e1y8rE2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001878288
Type: Automatic domain
Parent: e1y8qB1
Range: E:4-167,E:383-444
Ligands: ATP MG ZN
PDB: 1y8r
PDB Description: Ubiquitin-like 2 activating enzyme E1B
UniProt: Q9UBT2
Hsap BLAST neighbor: Q9UBT2
Species: Homo sapiens

Structure of domain e1y8rE2

Domains in the same chain:

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e1y8rE2 E:4-167,E:383-444 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1y8rE3 E:168-218,E:240-382 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8rE1 E:445-550 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e1y8rA2 A:9-179,A:203-345 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1y8rB1 B:4-167,B:383-444 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1y8rB3 B:168-218,B:240-382 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8rB2 B:445-550 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1y8rC1 C:21-92 beta-Grasp Ubiquitin-related Ubiquitin-like
e1y8rD1 D:9-177,D:204-345 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1y8rE2 E:4-167,E:383-444 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1y8rE3 E:168-218,E:240-382 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8rE1 E:445-550 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1y8rF1 F:21-92 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e1y8rE2 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1y8rD1 E:x,y,z->D:X,Y,Z Rossmann-related Interaction Interface Pymol
e1y8rF1 E:X,Y,Z->F:x,y,z Ubiquitin-related Interaction Interface Pymol
e1y8rD1 E:X-1/2,-Y+1/2,-Z->D:x,y,z Rossmann-related Interaction Interface Pymol
e1y8rA2 E:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol