Domain ID e1yl3E1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: Alanine racemase-C
  • F: Ribosomal_L3
UID: 001311619
Type: Automatic domain
Parent: e1vqoB1
Range: E:38-112,E:171-320
PDB: 1yl3
PDB Description:
Hsap BLAST neighbor: P39023
Species:

Structure of domain e1yl3E1

Domains in the same chain:

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e1yl3E1 E:38-112,E:171-320 cradle loop barrel RIFT-related Alanine racemase-C

Domains in the same PDB:

e1yl301 0:14-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e1yl311 1:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e1yl321 2:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e1yl331 3:2-87 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e1yl341 4:1-73 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e1yl351 5:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yl371 7:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e1yl381 8:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e1yl391 9:2-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e1yl3C1 C:5-63,C:159-227 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e1yl3C2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e1yl3D1 D:60-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1yl3D2 D:126-237 SH3 SH3 SH3
e1yl3E1 E:38-112,E:171-320 cradle loop barrel RIFT-related Alanine racemase-C
e1yl3F1 F:1-168,F:193-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1yl3G2 G:10-107,G:128-156 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1yl3H1 H:7-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yl3H2 H:82-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yl3I3 I:1-57 Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain
e1yl3I2 I:58-128 ClpS-like ClpS-related ClpS-related
e1yl3J3 J:1-57 Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain
e1yl3J2 J:58-128 ClpS-like ClpS-related ClpS-related
e1yl3K2 K:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e1yl3K1 K:56-149 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e1yl3L3 L:8-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e1yl3L4 L:72-140 HTH HTH Ribosomal protein L11, C-terminal domain
e1yl3M2 M:4-110,M:131-141 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1yl3N1 N:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1yl3O1 O:51-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yl3Q1 Q:9-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1yl3R1 R:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1yl3S1 S:2-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1yl3T1 T:1-78 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yl3U1 U:1-113 SH3 SH3 SH3
e1yl3V1 V:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1yl3V2 V:89-177 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e1yl3W1 W:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1yl3X1 X:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e1yl3E1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yl3N1 E:X,Y,Z->N:x,y,z Ribosomal protein L14-related Interaction Interface Pymol
e1yl3M2 E:X,Y,Z->M:x,y,z Ribosomal protein L13 and L16-A Interaction Interface Pymol