| UID: | 001746102 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1twfA6 |
| Range: | D:778-948 |
| PDB: | 1ynn |
| PDB Description: | DNA-directed RNA polymerase beta' chain |
| UniProt: | Q9KWU6 |
| Species: | Thermus aquaticus |
Structure of domain e1ynnD5
Domains in the same chain:
Domains in the same PDB:
Structural contacts of domain e1ynnD5 of H-group "first helical domain in RNA-polymerase beta-prime subunit":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1ynnC9 | D:x,y,z->C:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e1ynnB2 | D:x,y,z->B:X,Y,Z | Insert subdomain of RNA polymerase alpha subunit | Interaction Interface Pymol |
| e1ynnB1 | D:x,y,z->B:X,Y,Z | RBP11-like subunits of RNA polymerase | Interaction Interface Pymol |
| e1ynnK1 | D:X,Y,Z->K:x,y,z | RPB6/omega subunit-like | Interaction Interface Pymol |
| e1ynnD7 | D:-X+1,-Y+1,Z-1/2->D:x,y,z | alpha/beta-Hammerhead/Barrel-sandwich hybrid | Interaction Interface Pymol |
| e1ynnA2 | D:x,y,z->A:-Y+1/2,X+1/2,Z+1/4 | Insert subdomain of RNA polymerase alpha subunit | Interaction Interface Pymol |
| e1ynnC2 | D:x,y,z->C:-Y+1/2,X+1/2,Z+1/4 | alpha/beta-Hammerhead/Barrel-sandwich hybrid | Interaction Interface Pymol |
| e1ynnA1 | D:x,y,z->A:X,Y,Z | RBP11-like subunits of RNA polymerase | Interaction Interface Pymol |
