Domain ID e1yq2A4

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  • A: beta sandwiches
  • X: Glycosyl hydrolase domain-like
  • H: supersandwich
  • T: supersandwich
  • F: Bgal_small_N
UID: 000002014
Type: Manual and representative domain
Range: A:722-1023
Ligands: CL
PDB: 1yq2
PDB Description: beta-galactosidase
UniProt: Q8KRF6
Species: Arthrobacter sp. C2-2

Structure of domain e1yq2A4

Domains in the same chain:

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e1yq2A1 A:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1yq2A3 A:220-312 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2A5 A:313-609 TIM beta/alpha-barrel TIM barrels TIM barrels
e1yq2A2 A:610-721 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2A4 A:722-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e1yq2A1 A:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1yq2A3 A:220-312 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2A5 A:313-609 TIM beta/alpha-barrel TIM barrels TIM barrels
e1yq2A2 A:610-721 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2A4 A:722-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1yq2B1 B:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1yq2B3 B:220-312 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2B5 B:313-609 TIM beta/alpha-barrel TIM barrels TIM barrels
e1yq2B2 B:610-721 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2B4 B:722-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1yq2C1 C:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1yq2C3 C:220-312 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2C5 C:313-609 TIM beta/alpha-barrel TIM barrels TIM barrels
e1yq2C2 C:610-721 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2C4 C:722-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1yq2D1 D:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1yq2D3 D:220-312 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2D5 D:313-609 TIM beta/alpha-barrel TIM barrels TIM barrels
e1yq2D2 D:610-721 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2D4 D:722-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1yq2E1 E:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1yq2E3 E:220-312 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2E5 E:313-609 TIM beta/alpha-barrel TIM barrels TIM barrels
e1yq2E2 E:610-721 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2E4 E:722-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1yq2F1 F:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1yq2F3 F:220-312 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2F5 F:313-609 TIM beta/alpha-barrel TIM barrels TIM barrels
e1yq2F2 F:610-721 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2F4 F:722-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e1yq2A4 of H-group "supersandwich":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yq2F5 A:X,Y,Z->F:x,y,z TIM barrels Interaction Interface Pymol
e1yq2F1 A:X,Y,Z->F:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e1yq2C5 A:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e1yq2C3 A:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1yq2F2 A:x,y,z->F:-X,Y-1/2,-Z Immunoglobulin-related Interaction Interface Pymol