ECOD: domain e1yq2E5

Domain ID e1yq2E5

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: Glyco_hydro_2_C

UID:	000094686
Type:	Automatic domain
Parent:	e1jz8A5
Range:	E:313-609
Ligands:	MG NA PEG SO4
PDB:	1yq2
PDB Description:	beta-galactosidase
UniProt:	Q8KRF6
Hsap BLAST neighbor:	P08236
Species:	Arthrobacter sp. C2-2

Domain
In chain context
In PDB context

Structure of domain e1yq2E5

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e1yq2A1	A:9-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1yq2A3	A:220-312	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2A5	A:313-609	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1yq2A2	A:610-721	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2A4	A:722-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1yq2B1	B:9-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1yq2B3	B:220-312	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2B5	B:313-609	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1yq2B2	B:610-721	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2B4	B:722-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1yq2C1	C:9-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1yq2C3	C:220-312	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2C5	C:313-609	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1yq2C2	C:610-721	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2C4	C:722-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1yq2D1	D:9-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1yq2D3	D:220-312	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2D5	D:313-609	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1yq2D2	D:610-721	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2D4	D:722-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1yq2E1	E:9-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1yq2E3	E:220-312	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2E5	E:313-609	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1yq2E2	E:610-721	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2E4	E:722-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1yq2F1	F:9-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1yq2F3	F:220-312	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2F5	F:313-609	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1yq2F2	F:610-721	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yq2F4	F:722-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich

Structural contacts of domain e1yq2E5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1yq2B4	E:x,y,z->B:X,Y,Z	supersandwich	Interaction Interface Pymol
e1yq2F4	E:X,Y,Z->F:x,y,z	supersandwich	Interaction Interface Pymol
e1yq2B3	E:-X+1,Y-1/2,-Z+1->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol