Domain ID e2afiM1

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: Fer4_NifH
UID: 000287158
Type: Automatic domain
Parent: e2afhE1
Range: M:4-271
Ligands: ADP MG SF4
PDB: 2afi
PDB Description: Nitrogenase iron protein 1
UniProt: P00459
Species: Azotobacter vinelandii

Structure of domain e2afiM1

Domains in the same chain:

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e2afiM1 M:4-271 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e2afiA3 A:5-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiA1 A:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiA2 A:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiB3 B:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiB1 B:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiB2 B:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiC1 C:5-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiC2 C:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiC3 C:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiD3 D:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiD2 D:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiD1 D:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiE1 E:1-271 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2afiF1 F:1-275 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2afiG1 G:1-263 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2afiH1 H:2-270 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2afiI2 I:5-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiI3 I:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiI1 I:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiJ1 J:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiJ3 J:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiJ2 J:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiK2 K:5-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiK1 K:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiK3 K:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiL2 L:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiL3 L:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiL1 L:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e2afiM1 M:4-271 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2afiN1 N:4-273 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2afiO1 O:2-263 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2afiP1 P:6-272 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e2afiM1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2afiN1 M:X,Y,Z->N:x,y,z P-loop domains-related Interaction Interface Pymol
e2afiN1 M:x,y,z->J:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2afiN1 M:X-1,Y+1,Z->K:x,y,z P-loop domains-related Interaction Interface Pymol
e2afiN1 M:x,y,z->L:X,Y-1,Z P-loop domains-related Interaction Interface Pymol
e2afiN1 M:x,y,z->I:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2afiE1 M:x,y,z->E:X,Y-1,Z P-loop domains-related Interaction Interface Pymol
e2afiO1 M:X-1,Y+1,Z->O:x,y,z P-loop domains-related Interaction Interface Pymol
e2afiF1 M:x,y,z->F:X,Y-1,Z P-loop domains-related Interaction Interface Pymol