Domain ID e2b9p51

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000088915
Type: Automatic domain
Parent: e2j0151
Range: 5:2-59
PDB: 2b9p
PDB Description:
Species:

Structure of domain e2b9p51

Domains in the same chain:

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e2b9p51 5:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e2b9p01 0:2-87 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2b9p21 2:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2b9p31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2b9p41 4:1-73 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e2b9p51 5:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2b9p71 7:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2b9p81 8:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2b9p91 9:2-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2b9pD1 D:60-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2b9pD2 D:126-237 SH3 SH3 SH3
e2b9pE1 E:38-112,E:171-320 cradle loop barrel RIFT-related Alanine racemase-C
e2b9pF1 F:1-168,F:193-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2b9pG3 G:10-107,G:128-156 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2b9pH1 H:7-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2b9pH2 H:82-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2b9pI2 I:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2b9pI1 I:56-149 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e2b9pK3 K:8-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e2b9pK4 K:72-140 HTH HTH Ribosomal protein L11, C-terminal domain
e2b9pN2 N:4-110,N:131-141 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2b9pO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2b9pP1 P:51-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2b9pR1 R:14-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2b9pS1 S:9-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2b9pT1 T:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2b9pU1 U:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2b9pV1 V:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2b9pW1 W:2-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2b9pX1 X:1-78 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2b9pY1 Y:1-113 SH3 SH3 SH3
e2b9pZ1 Z:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2b9pZ2 Z:89-177 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e2b9p51 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2b9pW1 5:x,y,z->W:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e2b9pR1 5:x,y,z->R:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol