Domain ID e2ba1D2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 000071411
Type: Automatic domain
Parent: e2je6B2
Range: D:10-153
PDB: 2ba1
PDB Description: Archaeal exosome complex exonuclease RRP41
UniProt: O29757
Hsap BLAST neighbor: Q9NPD3
Species: Archaeoglobus fulgidus

Structure of domain e2ba1D2

Domains in the same chain:

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e2ba1D2 D:10-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba1D1 D:154-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e2ba1A2 A:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2ba1A1 A:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ba1B2 B:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2ba1B1 B:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ba1C2 C:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2ba1C1 C:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ba1D2 D:10-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba1D1 D:154-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba1E2 E:10-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba1E1 E:154-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba1F2 F:10-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba1F1 F:154-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba1G2 G:3-178 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba1G1 G:179-257 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba1H2 H:3-178 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba1H1 H:179-257 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba1I2 I:3-178 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba1I1 I:179-257 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e2ba1D2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ba1G2 D:X,Y,Z->G:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2ba1G1 D:X,Y,Z->G:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e2ba1I1 D:X,Y,Z->I:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e2ba1I2 D:X,Y,Z->I:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2ba1A2 D:x,y,z->A:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2ba1A1 D:x,y,z->A:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e2ba1E2 D:-Y,X,Z-1/4->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2ba1B1 D:x,y,z->B:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol