ECOD: domain e2bdpA3

Domain ID e2bdpA3

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_A

UID:	000066089
Type:	Automatic domain
Parent:	e2hhvA3
Range:	A:643-667,A:792-875
Ligands:	MG SO4
PDB:	2bdp
PDB Description:	PROTEIN (DNA POLYMERASE I)
UniProt:	P52026
Hsap BLAST neighbor:	O75417
Species:	Geobacillus stearothermophilus

Domains in the same chain:

Download Pymol

e2bdpA4	A:298-468	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2bdpA2	A:469-642	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e2bdpA3	A:643-667,A:792-875	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2bdpA1	A:668-791	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e2bdpA4	A:298-468	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2bdpA2	A:469-642	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e2bdpA3	A:643-667,A:792-875	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2bdpA1	A:668-791	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e2bdpA3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2bdpA4	A:-X,Y-1/2,-Z+1/2->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e2bdpA1	A:-X,Y-1/2,-Z+1/2->A:x,y,z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e2bdpA2	A:x,y,z->A:-X+1/2,-Y+1,Z-1/2	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e2bdpA1	A:x,y,z->A:-X+1/2,-Y+1,Z-1/2	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol