ECOD: domain e2d5wB2

Domain ID e2d5wB2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: SBP_bac_5

UID:	001547077
Type:	Automatic domain
Parent:	e3lvuA1
Range:	B:297-553
PDB:	2d5w
PDB Description:	PEPTIDE ABC TRANSPORTER, PEPTIDE-BINDING PROTEIN
UniProt:	Q5SHU6
Species:

Domain
In chain context
In PDB context

Structure of domain e2d5wB2

Domains in the same chain:

Download Pymol

e2d5wB1	B:1-42,B:158-184,B:208-296,B:554-602	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e2d5wB3	B:43-157	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e2d5wB2	B:297-553	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e2d5wA3	A:1-42,A:158-296,A:554-602	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e2d5wA2	A:43-157	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e2d5wA1	A:297-553	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e2d5wB1	B:1-42,B:158-184,B:208-296,B:554-602	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e2d5wB3	B:43-157	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e2d5wB2	B:297-553	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e2d5wB2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2d5wA3	B:x,y,z->A:X,Y,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wA3	B:x,y,z->A:X-1/2,-Y+1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wA3	B:x,y,z->A:-X,-Y+1,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wA2	B:x,y,z->A:-X,-Y+1,Z	Oligo-peptide binding protein (OPPA) insertion domain	Interaction Interface Pymol
e2d5wB2	B:x,y,z->B:-X-1/2,Y-1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wB3	B:-X-1/2,Y-1/2,-Z->B:x,y,z	Oligo-peptide binding protein (OPPA) insertion domain	Interaction Interface Pymol
e2d5wB2	B:-X-1/2,Y-1/2,-Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wB2	B:x,y,z->B:X-1/2,-Y+1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wB2	B:X-1/2,-Y+1/2,-Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wB3	B:X-1/2,-Y+1/2,-Z->B:x,y,z	Oligo-peptide binding protein (OPPA) insertion domain	Interaction Interface Pymol
e2d5wB2	B:x,y,z->B:-X,-Y+1,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e2d5wB2	B:-X,-Y+1,Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol