Domain ID e2dyrB2

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  • A: extended segments
  • X: Cytochrome c oxidase subunit II-like, transmembrane region
  • H: Cytochrome c oxidase subunit II-like, transmembrane region
  • T: Cytochrome c oxidase subunit II-like, transmembrane region
  • F: COX2_TM
UID: 000061170
Type: Automatic domain
Parent: e1v54B2
Range: B:1-90
Ligands: CDL CHD HEA PEK PSC TGL
PDB: 2dyr
PDB Description: CYTOCHROME C OXIDASE SUBUNIT 2
UniProt: P68530
Hsap BLAST neighbor: P00403
Species: Bos taurus

Structure of domain e2dyrB2

Domains in the same chain:

e2dyrB2 B:1-90 Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region
e2dyrB1 B:91-227 Cupredoxin-like Cupredoxin-related Cupredoxin-related

Domains in the same PDB:

e2dyrA1 A:1-514 Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like
e2dyrB2 B:1-90 Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region
e2dyrB1 B:91-227 Cupredoxin-like Cupredoxin-related Cupredoxin-related
e2dyrC1 C:3-261 Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like
e2dyrD1 D:4-147 Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV
e2dyrE1 E:5-109 Repetitive alpha hairpins Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E
e2dyrF1 F:1-98 Rubredoxin-like Rubredoxin-related Cytochrome c oxidase Subunit F
e2dyrG1 G:1-84 Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa
e2dyrH1 H:7-85 Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h
e2dyrI1 I:1-73 Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc
e2dyrJ1 J:1-58 Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa
e2dyrK1 K:6-54 Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb
e2dyrL1 L:2-47 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e2dyrM1 M:1-43 Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
e2dyrN1 N:1-514 Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like
e2dyrO2 O:1-90 Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region
e2dyrO1 O:91-227 Cupredoxin-like Cupredoxin-related Cupredoxin-related
e2dyrP1 P:3-261 Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like
e2dyrQ1 Q:4-147 Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV
e2dyrR1 R:5-109 Repetitive alpha hairpins Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E
e2dyrS1 S:1-98 Rubredoxin-like Rubredoxin-related Cytochrome c oxidase Subunit F
e2dyrT1 T:1-84 Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa
e2dyrU1 U:7-85 Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h
e2dyrV1 V:1-73 Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc
e2dyrW1 W:1-58 Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa
e2dyrX1 X:6-54 Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb
e2dyrY1 Y:2-47 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e2dyrZ1 Z:1-43 Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)

Structural contacts of domain e2dyrB2 of H-group "Cytochrome c oxidase subunit II-like, transmembrane region":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2dyrA1 B:x,y,z->A:X,Y,Z Cytochrome c oxidase subunit I-like Interaction Interface Pymol
e2dyrI1 B:X,Y,Z->I:x,y,z Mitochondrial cytochrome c oxidase subunit VIc Interaction Interface Pymol
e2dyrH1 B:X,Y,Z->H:x,y,z Cytochrome c oxidase subunit h Interaction Interface Pymol
e2dyrD1 B:X,Y,Z->D:x,y,z Mitochondrial cytochrome c oxidase subunit IV Interaction Interface Pymol
e2dyrE1 B:X,Y,Z->E:x,y,z Cytochrome c oxidase subunit E Interaction Interface Pymol
e2dyrK1 B:X,Y,Z->K:x,y,z Mitochondrial cytochrome c oxidase subunit VIIb Interaction Interface Pymol