Domain ID e2dyrD1

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  • A: extended segments
  • X: Mitochondrial cytochrome c oxidase subunit IV
  • H: Mitochondrial cytochrome c oxidase subunit IV
  • T: Mitochondrial cytochrome c oxidase subunit IV
  • F: COX4
UID: 000060829
Type: Automatic domain
Parent: e1v54D1
Range: D:4-147
Ligands: DMU PGV TGL
PDB: 2dyr
PDB Description: CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1
UniProt: P00423
Hsap BLAST neighbor: P13073
Species: Bos taurus

Structure of domain e2dyrD1

Domains in the same chain:

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e2dyrD1 D:4-147 Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV

Domains in the same PDB:

e2dyrA1 A:1-514 Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like
e2dyrB2 B:1-90 Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region
e2dyrB1 B:91-227 Cupredoxin-like Cupredoxin-related Cupredoxin-related
e2dyrC1 C:3-261 Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like
e2dyrD1 D:4-147 Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV
e2dyrE1 E:5-109 Repetitive alpha hairpins Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E
e2dyrF1 F:1-98 Rubredoxin-like Rubredoxin-related Cytochrome c oxidase Subunit F
e2dyrG1 G:1-84 Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa
e2dyrH1 H:7-85 Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h
e2dyrI1 I:1-73 Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc
e2dyrJ1 J:1-58 Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa
e2dyrK1 K:6-54 Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb
e2dyrL1 L:2-47 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e2dyrM1 M:1-43 Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
e2dyrN1 N:1-514 Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like
e2dyrO2 O:1-90 Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region
e2dyrO1 O:91-227 Cupredoxin-like Cupredoxin-related Cupredoxin-related
e2dyrP1 P:3-261 Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like
e2dyrQ1 Q:4-147 Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV
e2dyrR1 R:5-109 Repetitive alpha hairpins Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E
e2dyrS1 S:1-98 Rubredoxin-like Rubredoxin-related Cytochrome c oxidase Subunit F
e2dyrT1 T:1-84 Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa
e2dyrU1 U:7-85 Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h
e2dyrV1 V:1-73 Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc
e2dyrW1 W:1-58 Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa
e2dyrX1 X:6-54 Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb
e2dyrY1 Y:2-47 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e2dyrZ1 Z:1-43 Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)

Structural contacts of domain e2dyrD1 of H-group "Mitochondrial cytochrome c oxidase subunit IV":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2dyrK1 D:X,Y,Z->K:x,y,z Mitochondrial cytochrome c oxidase subunit VIIb Interaction Interface Pymol
e2dyrE1 D:X,Y,Z->E:x,y,z Cytochrome c oxidase subunit E Interaction Interface Pymol
e2dyrA1 D:x,y,z->A:X,Y,Z Cytochrome c oxidase subunit I-like Interaction Interface Pymol
e2dyrB1 D:x,y,z->B:X,Y,Z Cupredoxin-related Interaction Interface Pymol
e2dyrB2 D:x,y,z->B:X,Y,Z Cytochrome c oxidase subunit II-like, transmembrane region Interaction Interface Pymol
e2dyrI1 D:X,Y,Z->I:x,y,z Mitochondrial cytochrome c oxidase subunit VIc Interaction Interface Pymol
e2dyrB1 D:-X+1/2,-Y+3,Z-1/2->B:x,y,z Cupredoxin-related Interaction Interface Pymol
e2dyrM1 D:X,Y,Z->M:x,y,z Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Interaction Interface Pymol
e2dyrF1 D:X,Y,Z->F:x,y,z Rubredoxin-related Interaction Interface Pymol
e2dyrI1 D:-X+1/2,-Y+3,Z-1/2->I:x,y,z Mitochondrial cytochrome c oxidase subunit VIc Interaction Interface Pymol
e2dyrF1 D:x,y,z->F:-X+1/2,-Y+3,Z-1/2 Rubredoxin-related Interaction Interface Pymol