ECOD: domain e2gh8A1

Domain ID e2gh8A1

A: beta sandwiches
X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Calici_coat

UID:	001693517
Type:	Manual and representative domain
Range:	A:160-359
PDB:	2gh8
PDB Description:	Capsid protein
UniProt:	P36285
Species:

Domains in the same chain:

Download Pymol

e2gh8A1	A:160-359	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8A2	A:360-419,A:590-703	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e2gh8A3	A:420-589	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain

Domains in the same PDB:

e2gh8A1	A:160-359	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8A2	A:360-419,A:590-703	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e2gh8A3	A:420-589	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e2gh8B2	B:163-359	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8B1	B:360-419,B:590-703	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e2gh8B3	B:420-589	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e2gh8C1	C:160-359	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8C2	C:360-419,C:590-703	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e2gh8C3	C:420-589	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain

Structural contacts of domain e2gh8A1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2gh8C1	A:X,Y,Z->C:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e2gh8B1	A:X,Y,Z->B:x,y,z	Capsid protein protrusion (P) domain	Interaction Interface Pymol
e2gh8B2	A:X,Y,Z->B:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e2gh8C1	A:-X,-Y,Z->C:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol